Multiple sequence alignment - TraesCS3B01G138000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G138000 chr3B 100.000 3740 0 0 853 4592 123473232 123469493 0.000000e+00 6907.0
1 TraesCS3B01G138000 chr3B 100.000 420 0 0 1 420 123474084 123473665 0.000000e+00 776.0
2 TraesCS3B01G138000 chr3B 84.694 98 15 0 1761 1858 123472216 123472119 1.050000e-16 99.0
3 TraesCS3B01G138000 chr3B 84.694 98 15 0 1869 1966 123472324 123472227 1.050000e-16 99.0
4 TraesCS3B01G138000 chr3A 94.792 2861 102 32 1752 4592 91024242 91021409 0.000000e+00 4414.0
5 TraesCS3B01G138000 chr3A 92.260 1137 64 9 853 1966 91025208 91024073 0.000000e+00 1591.0
6 TraesCS3B01G138000 chr3A 91.383 441 13 9 1 420 91025653 91025217 8.560000e-162 580.0
7 TraesCS3B01G138000 chr3A 84.821 112 15 2 1749 1858 91024130 91024019 1.350000e-20 111.0
8 TraesCS3B01G138000 chr3D 94.064 2864 113 25 1761 4592 76932699 76929861 0.000000e+00 4294.0
9 TraesCS3B01G138000 chr3D 92.547 1127 48 15 853 1966 76933707 76932604 0.000000e+00 1583.0
10 TraesCS3B01G138000 chr3D 90.802 424 6 11 22 420 76934128 76933713 1.880000e-148 536.0
11 TraesCS3B01G138000 chr3D 83.784 222 25 5 1752 1966 76932769 76932552 2.800000e-47 200.0
12 TraesCS3B01G138000 chr3D 91.358 81 5 2 1752 1832 76932602 76932524 4.860000e-20 110.0
13 TraesCS3B01G138000 chr4A 84.758 866 81 24 2702 3553 531100691 531101519 0.000000e+00 821.0
14 TraesCS3B01G138000 chr5D 100.000 31 0 0 1295 1325 553746597 553746567 1.780000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G138000 chr3B 123469493 123474084 4591 True 1970.25 6907 92.347 1 4592 4 chr3B.!!$R1 4591
1 TraesCS3B01G138000 chr3A 91021409 91025653 4244 True 1674.00 4414 90.814 1 4592 4 chr3A.!!$R1 4591
2 TraesCS3B01G138000 chr3D 76929861 76934128 4267 True 1344.60 4294 90.511 22 4592 5 chr3D.!!$R1 4570
3 TraesCS3B01G138000 chr4A 531100691 531101519 828 False 821.00 821 84.758 2702 3553 1 chr4A.!!$F1 851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.237235 GATAGACCTCAGCTCGCTCG 59.763 60.0 0.00 0.00 0.00 5.03 F
184 185 0.618458 TGCGGAAAGATAAGCTGGGT 59.382 50.0 0.00 0.00 0.00 4.51 F
190 191 0.618458 AAGATAAGCTGGGTCGGCAA 59.382 50.0 1.41 0.00 38.37 4.52 F
251 271 0.760945 GTCCGTCTCATCCCATCCCT 60.761 60.0 0.00 0.00 0.00 4.20 F
2025 2191 0.941936 TGCGTCGCGACAAGAATTCA 60.942 50.0 35.71 18.48 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1787 0.040058 TACCGCAGTCTTGTCCCCTA 59.960 55.0 0.00 0.0 0.00 3.53 R
1934 2100 0.179111 CACACGGCGATGTGGATACT 60.179 55.0 24.85 0.0 45.21 2.12 R
1955 2121 0.676466 CCTTGCCCGCTGAACATACA 60.676 55.0 0.00 0.0 0.00 2.29 R
2144 2310 0.865111 TTTGTCGCACTGAACATCCG 59.135 50.0 0.00 0.0 0.00 4.18 R
3694 3885 0.104934 ACACAACTCTGGGGAGGACT 60.105 55.0 0.00 0.0 43.46 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.862602 CTGGTTTTACCGTGCCCTGC 61.863 60.000 0.00 0.00 42.58 4.85
74 75 2.032924 GCTGCAGACCGTAACAAAAACT 59.967 45.455 20.43 0.00 0.00 2.66
155 156 0.237235 GATAGACCTCAGCTCGCTCG 59.763 60.000 0.00 0.00 0.00 5.03
156 157 1.791103 ATAGACCTCAGCTCGCTCGC 61.791 60.000 0.00 0.00 0.00 5.03
157 158 2.878089 TAGACCTCAGCTCGCTCGCT 62.878 60.000 0.00 0.00 41.90 4.93
158 159 3.749735 GACCTCAGCTCGCTCGCTC 62.750 68.421 0.00 0.00 38.41 5.03
184 185 0.618458 TGCGGAAAGATAAGCTGGGT 59.382 50.000 0.00 0.00 0.00 4.51
185 186 1.300481 GCGGAAAGATAAGCTGGGTC 58.700 55.000 0.00 0.00 0.00 4.46
189 190 0.618458 AAAGATAAGCTGGGTCGGCA 59.382 50.000 1.41 0.00 38.37 5.69
190 191 0.618458 AAGATAAGCTGGGTCGGCAA 59.382 50.000 1.41 0.00 38.37 4.52
251 271 0.760945 GTCCGTCTCATCCCATCCCT 60.761 60.000 0.00 0.00 0.00 4.20
253 273 1.662608 CGTCTCATCCCATCCCTCG 59.337 63.158 0.00 0.00 0.00 4.63
995 1028 2.365105 CCCGGGCAAGGTAGGAGA 60.365 66.667 8.08 0.00 0.00 3.71
998 1031 1.677637 CCGGGCAAGGTAGGAGAGAC 61.678 65.000 0.00 0.00 0.00 3.36
1143 1176 2.615288 AAGGGAGGGAAGCAGGGG 60.615 66.667 0.00 0.00 0.00 4.79
1380 1414 5.222254 GGAGGTCTATCTCTCTCCCTGTTAT 60.222 48.000 0.00 0.00 39.75 1.89
1404 1438 2.065512 CGCCCCTGTTTATTTGTTTGC 58.934 47.619 0.00 0.00 0.00 3.68
1441 1475 6.910433 TCTGTTTATTTTGCTTGAGACGAAAC 59.090 34.615 0.00 0.00 0.00 2.78
1622 1662 1.600636 AATGTGTGCCCAGTGGACG 60.601 57.895 11.95 0.00 0.00 4.79
1638 1678 2.896685 TGGACGATTGGGCTTTGAATTT 59.103 40.909 0.00 0.00 0.00 1.82
1721 1767 1.969208 TGGTGTCCGTATTGGTGTGTA 59.031 47.619 0.00 0.00 39.52 2.90
1735 1781 4.274147 TGGTGTGTACTTGTTTGGTTGAT 58.726 39.130 0.00 0.00 0.00 2.57
1741 1787 5.067283 GTGTACTTGTTTGGTTGATTGAGGT 59.933 40.000 0.00 0.00 0.00 3.85
1759 1805 1.229082 TAGGGGACAAGACTGCGGT 60.229 57.895 0.00 0.00 0.00 5.68
1788 1834 4.274214 TGATAACGGTATCTCGATCGTTGT 59.726 41.667 20.68 8.79 44.07 3.32
1792 1838 3.242543 ACGGTATCTCGATCGTTGTGTAC 60.243 47.826 15.94 14.47 31.38 2.90
1810 1913 2.743636 ACCGTATGTTCAGTGACTGG 57.256 50.000 13.33 0.00 31.51 4.00
1832 1935 5.788533 TGGGGGATTATTGATAACGGTATCT 59.211 40.000 20.68 4.82 37.58 1.98
1833 1936 6.273730 TGGGGGATTATTGATAACGGTATCTT 59.726 38.462 20.68 11.08 37.58 2.40
1834 1937 6.598064 GGGGGATTATTGATAACGGTATCTTG 59.402 42.308 20.68 0.00 37.58 3.02
1879 2045 7.730084 TCAGTGACTCTGGGATTATTGATAAG 58.270 38.462 4.76 0.00 43.76 1.73
1885 2051 6.505344 ACTCTGGGATTATTGATAAGGGCATA 59.495 38.462 0.00 0.00 0.00 3.14
1886 2052 7.185304 ACTCTGGGATTATTGATAAGGGCATAT 59.815 37.037 0.00 0.00 0.00 1.78
1893 2059 3.266510 TGATAAGGGCATATCCATCGC 57.733 47.619 6.97 0.00 36.21 4.58
1934 2100 5.431731 AGTGACTGGGGGATTATTGATAACA 59.568 40.000 0.00 0.00 0.00 2.41
1941 2107 6.564539 TGGGGGATTATTGATAACAGTATCCA 59.435 38.462 0.00 0.00 36.08 3.41
1949 2115 2.502213 TAACAGTATCCACATCGCCG 57.498 50.000 0.00 0.00 0.00 6.46
2025 2191 0.941936 TGCGTCGCGACAAGAATTCA 60.942 50.000 35.71 18.48 0.00 2.57
2034 2200 4.143115 CGCGACAAGAATTCATACACTGTT 60.143 41.667 0.00 0.00 0.00 3.16
2144 2310 4.132336 GGTATCCCCTGTTATTTCGGAAC 58.868 47.826 0.00 0.00 0.00 3.62
2181 2347 5.447279 CGACAAATGGGTTATAAGTGAGTGC 60.447 44.000 0.00 0.00 0.00 4.40
2249 2415 6.993786 TTTGCGTTGATGTGATATTCCTTA 57.006 33.333 0.00 0.00 0.00 2.69
2304 2470 4.740922 TGGCAAGTGTAGGCATGG 57.259 55.556 0.00 0.00 36.56 3.66
2337 2503 4.451096 ACGTTGTAGCATTTCCTGTACTTG 59.549 41.667 0.00 0.00 0.00 3.16
2354 2520 6.163476 TGTACTTGTCACTCATTGATGTACC 58.837 40.000 0.00 0.00 37.41 3.34
2502 2670 9.941664 CTTATTCTTTATTGATGATGTCACACC 57.058 33.333 0.00 0.00 36.32 4.16
2521 2689 5.287513 CACACCGTTCTTTTGGTAGTTTTTG 59.712 40.000 0.00 0.00 36.50 2.44
2541 2709 4.963276 TGTGGAAAGTTGTTGAGAGTTG 57.037 40.909 0.00 0.00 0.00 3.16
2593 2761 1.696314 GGGAGAGGTTATGGCCCCA 60.696 63.158 0.00 0.00 34.10 4.96
2710 2878 5.955959 TGTCTAGGCAAGTCATAAGGAACTA 59.044 40.000 0.00 0.00 38.49 2.24
3019 3191 6.758416 CCAAAAAGGAGTTGAAAAAGAAGGAG 59.242 38.462 0.00 0.00 41.22 3.69
3082 3254 0.661187 AAAACACAAGCGATGCTGCG 60.661 50.000 0.00 0.00 39.62 5.18
3187 3364 9.299465 AGGACTAATAAAGCTGAGTACCTATAC 57.701 37.037 0.00 0.00 0.00 1.47
3305 3485 3.133365 AAGACGCACCTGCCCCTTT 62.133 57.895 0.00 0.00 37.91 3.11
3626 3812 1.203287 GCCCAAGTTTTGAGATGCTCC 59.797 52.381 0.00 0.00 0.00 4.70
3690 3881 3.304794 CGTCGCAATAAACTTTTTCCCCA 60.305 43.478 0.00 0.00 0.00 4.96
3694 3885 4.322349 CGCAATAAACTTTTTCCCCATCCA 60.322 41.667 0.00 0.00 0.00 3.41
3876 4067 1.075536 CAGGGCCTCTTGGGTACTTTT 59.924 52.381 0.95 0.00 37.43 2.27
3877 4068 1.354705 AGGGCCTCTTGGGTACTTTTC 59.645 52.381 0.00 0.00 37.43 2.29
3881 4072 2.306219 GCCTCTTGGGTACTTTTCCTCT 59.694 50.000 0.00 0.00 37.43 3.69
3888 4079 2.417515 GGGTACTTTTCCTCTCGCTCTG 60.418 54.545 0.00 0.00 0.00 3.35
3890 4081 2.447244 ACTTTTCCTCTCGCTCTGTG 57.553 50.000 0.00 0.00 0.00 3.66
3967 4171 7.170393 AGGAGTATCTTTGTTATTTTTGCCC 57.830 36.000 0.00 0.00 33.73 5.36
3968 4172 6.954102 AGGAGTATCTTTGTTATTTTTGCCCT 59.046 34.615 0.00 0.00 33.73 5.19
3969 4173 7.122799 AGGAGTATCTTTGTTATTTTTGCCCTC 59.877 37.037 0.00 0.00 33.73 4.30
3970 4174 7.122799 GGAGTATCTTTGTTATTTTTGCCCTCT 59.877 37.037 0.00 0.00 33.73 3.69
3971 4175 7.830739 AGTATCTTTGTTATTTTTGCCCTCTG 58.169 34.615 0.00 0.00 0.00 3.35
4014 4220 2.014128 CTGGTAGGCCATTTTGTACGG 58.986 52.381 5.01 0.00 45.05 4.02
4017 4223 2.285977 GTAGGCCATTTTGTACGGGAG 58.714 52.381 5.01 0.00 0.00 4.30
4030 4236 1.187087 ACGGGAGAGAGAAGCGAAAT 58.813 50.000 0.00 0.00 0.00 2.17
4034 4240 4.141914 ACGGGAGAGAGAAGCGAAATAATT 60.142 41.667 0.00 0.00 0.00 1.40
4114 4320 1.739466 GAAGACAAATCATCTGCGGCA 59.261 47.619 1.29 1.29 0.00 5.69
4183 4389 2.203126 CAAGCATCTCTCCCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
4202 4408 0.178992 CCCATCTCTCTCTCTCGGCT 60.179 60.000 0.00 0.00 0.00 5.52
4237 4443 1.411612 GACTACTATTCCACCCACCCG 59.588 57.143 0.00 0.00 0.00 5.28
4251 4457 0.905357 CACCCGTCCCATCTCTCTTT 59.095 55.000 0.00 0.00 0.00 2.52
4536 4749 3.934962 GCCCTGATCGGCTCCCTC 61.935 72.222 4.50 0.00 46.10 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.899534 GCAGGGCACGGTAAAACCA 60.900 57.895 0.00 0.00 38.47 3.67
26 27 1.585521 GTGTACTCCGTCCGATGCG 60.586 63.158 0.00 0.00 0.00 4.73
184 185 4.704833 GCTCCTGCAGGTTGCCGA 62.705 66.667 31.58 11.07 44.23 5.54
251 271 1.337071 CTGGTTTATAGAGCGAGGCGA 59.663 52.381 0.00 0.00 0.00 5.54
253 273 1.202533 TGCTGGTTTATAGAGCGAGGC 60.203 52.381 0.00 0.00 35.36 4.70
345 373 3.307904 GGATTAGGGTTTTGAGACGGGAA 60.308 47.826 0.00 0.00 0.00 3.97
995 1028 1.762460 CCTCCGCCCACCATAGTCT 60.762 63.158 0.00 0.00 0.00 3.24
998 1031 3.466791 CTGCCTCCGCCCACCATAG 62.467 68.421 0.00 0.00 0.00 2.23
1380 1414 0.600557 CAAATAAACAGGGGCGTGCA 59.399 50.000 0.00 0.00 0.00 4.57
1404 1438 6.237384 GCAAAATAAACAGATCATGAACAGCG 60.237 38.462 0.00 0.00 0.00 5.18
1441 1475 1.933997 CGTTGCACAACAGCACACG 60.934 57.895 13.52 0.00 45.61 4.49
1488 1527 2.866156 CTGCATATCAACACTACCACGG 59.134 50.000 0.00 0.00 0.00 4.94
1489 1528 3.780902 TCTGCATATCAACACTACCACG 58.219 45.455 0.00 0.00 0.00 4.94
1550 1589 1.339438 CCAGCAGGCATCAGTACACTT 60.339 52.381 0.00 0.00 0.00 3.16
1622 1662 8.470002 ACTACAGATAAAATTCAAAGCCCAATC 58.530 33.333 0.00 0.00 0.00 2.67
1721 1767 4.827284 CCTACCTCAATCAACCAAACAAGT 59.173 41.667 0.00 0.00 0.00 3.16
1735 1781 2.257207 CAGTCTTGTCCCCTACCTCAA 58.743 52.381 0.00 0.00 0.00 3.02
1741 1787 0.040058 TACCGCAGTCTTGTCCCCTA 59.960 55.000 0.00 0.00 0.00 3.53
1759 1805 8.886719 ACGATCGAGATACCGTTATCAATAATA 58.113 33.333 24.34 0.00 37.20 0.98
1788 1834 3.057104 CCAGTCACTGAACATACGGTACA 60.057 47.826 6.30 0.00 32.44 2.90
1792 1838 1.405526 CCCCAGTCACTGAACATACGG 60.406 57.143 6.30 0.00 32.44 4.02
1810 1913 7.391620 TCAAGATACCGTTATCAATAATCCCC 58.608 38.462 2.62 0.00 37.20 4.81
1832 1935 2.881513 ACATACGCCACACAACAATCAA 59.118 40.909 0.00 0.00 0.00 2.57
1833 1936 2.499197 ACATACGCCACACAACAATCA 58.501 42.857 0.00 0.00 0.00 2.57
1834 1937 3.058570 TGAACATACGCCACACAACAATC 60.059 43.478 0.00 0.00 0.00 2.67
1879 2045 0.250467 ACACAGCGATGGATATGCCC 60.250 55.000 5.32 0.00 34.97 5.36
1885 2051 3.181479 ACATACGTTACACAGCGATGGAT 60.181 43.478 5.32 0.00 32.08 3.41
1886 2052 2.164827 ACATACGTTACACAGCGATGGA 59.835 45.455 5.32 0.00 32.08 3.41
1893 2059 5.117135 CAGTCACTGAACATACGTTACACAG 59.883 44.000 0.00 0.47 34.75 3.66
1934 2100 0.179111 CACACGGCGATGTGGATACT 60.179 55.000 24.85 0.00 45.21 2.12
1949 2115 1.665679 CCCGCTGAACATACATCACAC 59.334 52.381 0.00 0.00 0.00 3.82
1955 2121 0.676466 CCTTGCCCGCTGAACATACA 60.676 55.000 0.00 0.00 0.00 2.29
2025 2191 3.186283 TCCCACCATACCAACAGTGTAT 58.814 45.455 0.00 0.00 0.00 2.29
2034 2200 1.906574 GACAACTCTCCCACCATACCA 59.093 52.381 0.00 0.00 0.00 3.25
2144 2310 0.865111 TTTGTCGCACTGAACATCCG 59.135 50.000 0.00 0.00 0.00 4.18
2181 2347 3.574614 CACCAAAAGGCGGAAGTAAATG 58.425 45.455 0.00 0.00 0.00 2.32
2304 2470 6.413818 GGAAATGCTACAACGTTAATGCATAC 59.586 38.462 24.17 20.82 39.76 2.39
2337 2503 4.569943 ACACTGGTACATCAATGAGTGAC 58.430 43.478 13.45 0.00 39.72 3.67
2354 2520 4.869215 TGTGCAACATGGATAAAACACTG 58.131 39.130 0.00 0.00 45.67 3.66
2491 2659 2.616376 CCAAAAGAACGGTGTGACATCA 59.384 45.455 0.00 0.00 0.00 3.07
2502 2670 5.642686 TCCACAAAAACTACCAAAAGAACG 58.357 37.500 0.00 0.00 0.00 3.95
2521 2689 4.965119 ACAACTCTCAACAACTTTCCAC 57.035 40.909 0.00 0.00 0.00 4.02
2593 2761 7.203218 GGTGCTTGAACTCAAAAAGAATTACT 58.797 34.615 0.00 0.00 35.15 2.24
2710 2878 6.718522 GGTAGAAATCTAGCAAGTAGAGGT 57.281 41.667 13.31 0.00 44.09 3.85
3019 3191 0.170561 CAGCATCAAGTTCAGCCAGC 59.829 55.000 0.00 0.00 0.00 4.85
3082 3254 3.993920 ACCATTGTTGTTTCCATCTTGC 58.006 40.909 0.00 0.00 0.00 4.01
3187 3364 6.092748 AGTTTATAAAAGCAATGAAGCCACG 58.907 36.000 0.00 0.00 34.23 4.94
3626 3812 6.148480 GGGGATCATTCATTATCGAAACTCAG 59.852 42.308 0.00 0.00 0.00 3.35
3690 3881 0.419459 AACTCTGGGGAGGACTGGAT 59.581 55.000 0.00 0.00 43.46 3.41
3694 3885 0.104934 ACACAACTCTGGGGAGGACT 60.105 55.000 0.00 0.00 43.46 3.85
3876 4067 0.250945 ACAGACACAGAGCGAGAGGA 60.251 55.000 0.00 0.00 0.00 3.71
3877 4068 0.109365 CACAGACACAGAGCGAGAGG 60.109 60.000 0.00 0.00 0.00 3.69
3881 4072 0.244721 CATCCACAGACACAGAGCGA 59.755 55.000 0.00 0.00 0.00 4.93
3888 4079 2.703416 TGAAGCATCATCCACAGACAC 58.297 47.619 0.00 0.00 0.00 3.67
3890 4081 2.617308 CCATGAAGCATCATCCACAGAC 59.383 50.000 0.43 0.00 44.53 3.51
3963 4167 3.511146 GGAATGAATGTTTTCAGAGGGCA 59.489 43.478 0.00 0.00 44.75 5.36
3964 4168 3.511146 TGGAATGAATGTTTTCAGAGGGC 59.489 43.478 0.00 0.00 44.75 5.19
3967 4171 7.648112 CAGCATATGGAATGAATGTTTTCAGAG 59.352 37.037 4.56 0.00 44.75 3.35
3968 4172 7.485810 CAGCATATGGAATGAATGTTTTCAGA 58.514 34.615 4.56 0.00 44.75 3.27
3969 4173 6.200286 GCAGCATATGGAATGAATGTTTTCAG 59.800 38.462 4.56 0.00 44.75 3.02
3970 4174 6.044046 GCAGCATATGGAATGAATGTTTTCA 58.956 36.000 4.56 0.00 45.57 2.69
3971 4175 6.200286 CAGCAGCATATGGAATGAATGTTTTC 59.800 38.462 4.56 0.00 0.00 2.29
4014 4220 6.220201 AGCTAATTATTTCGCTTCTCTCTCC 58.780 40.000 0.00 0.00 30.23 3.71
4017 4223 7.223777 AGACAAGCTAATTATTTCGCTTCTCTC 59.776 37.037 6.69 3.66 40.68 3.20
4030 4236 4.630069 GCGAAAGACCAGACAAGCTAATTA 59.370 41.667 0.00 0.00 0.00 1.40
4034 4240 1.618837 AGCGAAAGACCAGACAAGCTA 59.381 47.619 0.00 0.00 31.38 3.32
4044 4250 3.896648 TTGTGATGAAAGCGAAAGACC 57.103 42.857 0.00 0.00 0.00 3.85
4114 4320 4.051237 GTGCTCGCTTCTTTTTGGATTTT 58.949 39.130 0.00 0.00 0.00 1.82
4183 4389 0.178992 AGCCGAGAGAGAGAGATGGG 60.179 60.000 0.00 0.00 0.00 4.00
4225 4431 4.902258 TGGGACGGGTGGGTGGAA 62.902 66.667 0.00 0.00 0.00 3.53
4237 4443 1.410882 CGGGAGAAAGAGAGATGGGAC 59.589 57.143 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.