Multiple sequence alignment - TraesCS3B01G137500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G137500 chr3B 100.000 7391 0 0 1 7391 123032077 123024687 0.000000e+00 13649.0
1 TraesCS3B01G137500 chr3B 79.966 584 74 30 128 704 19363552 19364099 2.500000e-104 390.0
2 TraesCS3B01G137500 chr3B 96.992 133 4 0 4519 4651 207301294 207301426 2.680000e-54 224.0
3 TraesCS3B01G137500 chr3B 93.793 145 7 2 4506 4649 536903788 536903645 4.490000e-52 217.0
4 TraesCS3B01G137500 chr3A 95.652 4416 141 26 118 4524 90305394 90301021 0.000000e+00 7044.0
5 TraesCS3B01G137500 chr3A 96.520 2069 54 8 4915 6979 90300920 90298866 0.000000e+00 3406.0
6 TraesCS3B01G137500 chr3A 94.712 416 15 4 6976 7390 90298711 90298302 2.250000e-179 640.0
7 TraesCS3B01G137500 chr3A 95.327 107 3 1 4647 4753 90301023 90300919 1.280000e-37 169.0
8 TraesCS3B01G137500 chr3A 72.667 450 97 22 268 710 724042520 724042950 7.780000e-25 126.0
9 TraesCS3B01G137500 chr3D 94.201 2483 97 12 4915 7387 75954487 75952042 0.000000e+00 3744.0
10 TraesCS3B01G137500 chr3D 96.112 2032 60 8 824 2842 75958692 75956667 0.000000e+00 3297.0
11 TraesCS3B01G137500 chr3D 98.334 1681 28 0 2844 4524 75956270 75954590 0.000000e+00 2950.0
12 TraesCS3B01G137500 chr3D 85.235 1341 133 43 1 1323 75960708 75959415 0.000000e+00 1319.0
13 TraesCS3B01G137500 chr3D 88.942 208 20 3 271 476 75960577 75960371 3.420000e-63 254.0
14 TraesCS3B01G137500 chr3D 74.917 602 94 36 43 634 112325240 112324686 9.650000e-54 222.0
15 TraesCS3B01G137500 chr3D 80.969 289 41 12 264 545 94738242 94737961 4.490000e-52 217.0
16 TraesCS3B01G137500 chr3D 81.362 279 38 9 115 390 112324901 112324634 1.620000e-51 215.0
17 TraesCS3B01G137500 chr3D 77.049 366 69 12 115 478 587614336 587613984 5.850000e-46 196.0
18 TraesCS3B01G137500 chr3D 97.196 107 3 0 4647 4753 75954592 75954486 1.640000e-41 182.0
19 TraesCS3B01G137500 chr3D 76.966 356 50 17 270 624 606725099 606724775 2.740000e-39 174.0
20 TraesCS3B01G137500 chr3D 73.846 390 65 21 265 624 129262019 129261637 3.620000e-23 121.0
21 TraesCS3B01G137500 chr7D 78.683 638 86 36 8 624 403802523 403803131 5.410000e-101 379.0
22 TraesCS3B01G137500 chr7D 77.451 612 96 33 119 718 577256358 577255777 1.990000e-85 327.0
23 TraesCS3B01G137500 chr7D 78.530 517 71 31 119 624 625555710 625556197 3.350000e-78 303.0
24 TraesCS3B01G137500 chr7D 97.590 166 4 0 4752 4917 312574128 312574293 1.210000e-72 285.0
25 TraesCS3B01G137500 chr7D 97.024 168 5 0 4749 4916 363148830 363148997 4.370000e-72 283.0
26 TraesCS3B01G137500 chr7D 79.941 339 46 19 150 478 25854069 25853743 5.770000e-56 230.0
27 TraesCS3B01G137500 chr7D 90.968 155 12 2 4501 4655 142882761 142882609 2.700000e-49 207.0
28 TraesCS3B01G137500 chr7D 80.383 209 34 5 495 703 151408494 151408293 1.280000e-32 152.0
29 TraesCS3B01G137500 chr7D 79.048 210 29 11 12 212 153126137 153125934 6.020000e-26 130.0
30 TraesCS3B01G137500 chr4D 79.883 512 71 23 118 621 4146417 4145930 5.490000e-91 346.0
31 TraesCS3B01G137500 chr4D 95.930 172 7 0 4752 4923 423909746 423909575 5.650000e-71 279.0
32 TraesCS3B01G137500 chr4D 84.889 225 30 4 264 486 441258659 441258437 2.680000e-54 224.0
33 TraesCS3B01G137500 chr4D 78.747 367 51 21 265 624 424166024 424165678 3.470000e-53 220.0
34 TraesCS3B01G137500 chr4D 78.320 369 57 16 264 624 34069891 34070244 4.490000e-52 217.0
35 TraesCS3B01G137500 chr4D 78.873 355 44 20 278 628 65104830 65104503 2.090000e-50 211.0
36 TraesCS3B01G137500 chr4D 82.648 219 30 8 263 478 500411701 500411914 3.520000e-43 187.0
37 TraesCS3B01G137500 chr4D 75.439 456 62 31 181 633 481204870 481205278 7.620000e-40 176.0
38 TraesCS3B01G137500 chr4D 80.973 226 25 13 401 624 424192657 424192448 5.930000e-36 163.0
39 TraesCS3B01G137500 chr4D 80.263 228 25 13 401 624 424166031 424165820 3.570000e-33 154.0
40 TraesCS3B01G137500 chr4D 80.455 220 28 12 405 623 424462362 424462157 3.570000e-33 154.0
41 TraesCS3B01G137500 chr4D 80.000 130 14 7 495 612 447755241 447755112 1.320000e-12 86.1
42 TraesCS3B01G137500 chr4D 86.842 76 6 4 119 194 340081784 340081855 1.710000e-11 82.4
43 TraesCS3B01G137500 chr6D 81.628 430 61 16 2 425 456943455 456943872 2.550000e-89 340.0
44 TraesCS3B01G137500 chr6D 78.345 411 63 22 133 530 354063763 354064160 7.410000e-60 243.0
45 TraesCS3B01G137500 chr6D 80.097 206 27 11 427 631 380707663 380707471 2.780000e-29 141.0
46 TraesCS3B01G137500 chr6D 78.440 218 36 10 1 212 43952609 43952397 1.670000e-26 132.0
47 TraesCS3B01G137500 chr6D 75.820 244 49 8 117 354 13585182 13585421 1.690000e-21 115.0
48 TraesCS3B01G137500 chr6D 90.909 66 5 1 565 630 456943583 456943647 3.670000e-13 87.9
49 TraesCS3B01G137500 chr4A 79.608 510 77 19 120 624 714401903 714402390 2.550000e-89 340.0
50 TraesCS3B01G137500 chr4A 77.747 364 41 23 264 624 155595353 155595679 3.520000e-43 187.0
51 TraesCS3B01G137500 chr7A 80.043 466 76 13 3995 4449 36646186 36646645 5.530000e-86 329.0
52 TraesCS3B01G137500 chr7A 97.024 168 5 0 4752 4919 643187054 643186887 4.370000e-72 283.0
53 TraesCS3B01G137500 chr7A 78.212 358 60 16 18 367 83700002 83699655 5.810000e-51 213.0
54 TraesCS3B01G137500 chr7A 84.906 106 12 4 1 103 20733226 20733330 3.650000e-18 104.0
55 TraesCS3B01G137500 chr4B 77.430 607 101 28 118 703 444361507 444360916 5.530000e-86 329.0
56 TraesCS3B01G137500 chr2B 77.504 609 93 27 118 719 464902215 464901644 7.150000e-85 326.0
57 TraesCS3B01G137500 chr2B 97.024 168 5 0 4752 4919 519598861 519599028 4.370000e-72 283.0
58 TraesCS3B01G137500 chr2B 94.054 185 9 2 4735 4918 385568891 385568708 5.650000e-71 279.0
59 TraesCS3B01G137500 chr2B 93.956 182 10 1 4736 4916 121512032 121512213 2.630000e-69 274.0
60 TraesCS3B01G137500 chr2B 89.506 162 13 4 4518 4677 658452476 658452317 1.260000e-47 202.0
61 TraesCS3B01G137500 chr7B 78.887 521 75 27 118 630 725401687 725402180 3.330000e-83 320.0
62 TraesCS3B01G137500 chr1A 77.778 567 85 32 76 624 112991191 112990648 2.000000e-80 311.0
63 TraesCS3B01G137500 chr1A 97.692 130 3 0 4521 4650 481651102 481650973 2.680000e-54 224.0
64 TraesCS3B01G137500 chr1A 97.015 134 3 1 4522 4654 486045773 486045906 2.680000e-54 224.0
65 TraesCS3B01G137500 chr1A 82.243 107 14 4 3 104 460949969 460950075 3.670000e-13 87.9
66 TraesCS3B01G137500 chr5D 78.685 502 73 26 128 625 67016594 67016123 3.350000e-78 303.0
67 TraesCS3B01G137500 chr5D 81.717 361 48 15 119 472 426504969 426505318 1.210000e-72 285.0
68 TraesCS3B01G137500 chr5D 81.884 276 39 10 259 530 421372651 421372919 9.650000e-54 222.0
69 TraesCS3B01G137500 chr5D 76.299 308 50 15 405 709 337188742 337188455 7.730000e-30 143.0
70 TraesCS3B01G137500 chr5D 89.623 106 9 2 447 552 241675070 241675173 4.650000e-27 134.0
71 TraesCS3B01G137500 chr5D 79.452 146 19 9 488 624 259096019 259096162 7.900000e-15 93.5
72 TraesCS3B01G137500 chr5D 91.935 62 5 0 563 624 264620949 264620888 3.670000e-13 87.9
73 TraesCS3B01G137500 chr6A 79.821 446 65 17 70 500 513355663 513356098 1.210000e-77 302.0
74 TraesCS3B01G137500 chr6A 81.364 220 28 9 3 212 504887167 504887383 4.590000e-37 167.0
75 TraesCS3B01G137500 chr2D 81.132 371 58 10 120 486 400493755 400494117 3.370000e-73 287.0
76 TraesCS3B01G137500 chr2D 79.673 428 59 24 73 486 6157063 6157476 4.370000e-72 283.0
77 TraesCS3B01G137500 chr2D 97.024 168 5 0 4752 4919 593801596 593801763 4.370000e-72 283.0
78 TraesCS3B01G137500 chr2D 73.256 344 54 27 299 630 6156868 6157185 2.840000e-14 91.6
79 TraesCS3B01G137500 chr2D 78.169 142 23 6 495 630 24314837 24314698 4.750000e-12 84.2
80 TraesCS3B01G137500 chr1D 97.605 167 4 0 4750 4916 356185771 356185937 3.370000e-73 287.0
81 TraesCS3B01G137500 chr1D 79.679 374 52 18 260 632 257509864 257510214 1.590000e-61 248.0
82 TraesCS3B01G137500 chr1D 81.724 290 41 11 264 548 17147226 17147508 1.600000e-56 231.0
83 TraesCS3B01G137500 chr1D 74.576 531 101 26 8 524 106512552 106513062 1.260000e-47 202.0
84 TraesCS3B01G137500 chr1D 76.471 357 56 17 273 624 465704188 465704521 1.280000e-37 169.0
85 TraesCS3B01G137500 chr1D 72.921 517 114 23 119 624 422858185 422858686 9.930000e-34 156.0
86 TraesCS3B01G137500 chr1D 76.712 292 44 14 131 400 255502593 255502304 2.780000e-29 141.0
87 TraesCS3B01G137500 chr1D 74.564 401 63 30 13 390 45493599 45493983 1.000000e-28 139.0
88 TraesCS3B01G137500 chr1D 77.876 226 42 7 264 484 34950073 34949851 4.650000e-27 134.0
89 TraesCS3B01G137500 chr1D 75.546 229 43 11 134 357 257510133 257510353 4.720000e-17 100.0
90 TraesCS3B01G137500 chr1D 86.905 84 8 3 130 210 453709828 453709745 2.840000e-14 91.6
91 TraesCS3B01G137500 chr1D 76.571 175 34 7 554 727 33737592 33737760 1.020000e-13 89.8
92 TraesCS3B01G137500 chr1D 85.057 87 12 1 118 203 257510259 257510345 3.670000e-13 87.9
93 TraesCS3B01G137500 chr1D 91.667 60 5 0 565 624 257509873 257509932 4.750000e-12 84.2
94 TraesCS3B01G137500 chr1D 91.667 60 4 1 565 624 463462508 463462450 1.710000e-11 82.4
95 TraesCS3B01G137500 chr1D 86.765 68 5 4 565 631 308489382 308489446 1.030000e-08 73.1
96 TraesCS3B01G137500 chr1D 83.750 80 5 7 136 211 486903628 486903553 1.330000e-07 69.4
97 TraesCS3B01G137500 chrUn 76.630 552 93 27 3 543 335647149 335647675 9.450000e-69 272.0
98 TraesCS3B01G137500 chrUn 73.906 640 115 34 9 624 100227652 100228263 7.510000e-50 209.0
99 TraesCS3B01G137500 chrUn 78.909 275 44 13 118 390 100228057 100228319 2.740000e-39 174.0
100 TraesCS3B01G137500 chrUn 75.597 377 64 23 264 627 438426704 438426343 2.130000e-35 161.0
101 TraesCS3B01G137500 chrUn 78.151 238 39 9 119 355 9986234 9986009 1.000000e-28 139.0
102 TraesCS3B01G137500 chrUn 74.590 366 64 20 1 357 96185200 96184855 4.650000e-27 134.0
103 TraesCS3B01G137500 chrUn 79.167 216 26 14 401 613 335647256 335647455 1.670000e-26 132.0
104 TraesCS3B01G137500 chrUn 80.124 161 21 10 67 222 42065347 42065193 7.840000e-20 110.0
105 TraesCS3B01G137500 chrUn 83.471 121 11 5 264 383 100227681 100227793 3.650000e-18 104.0
106 TraesCS3B01G137500 chrUn 91.549 71 5 1 410 480 96184943 96184874 6.100000e-16 97.1
107 TraesCS3B01G137500 chrUn 93.103 58 4 0 567 624 392944039 392944096 1.320000e-12 86.1
108 TraesCS3B01G137500 chrUn 87.500 64 6 2 563 624 471371769 471371832 1.030000e-08 73.1
109 TraesCS3B01G137500 chrUn 92.683 41 3 0 584 624 363767648 363767688 8.010000e-05 60.2
110 TraesCS3B01G137500 chr1B 97.015 134 4 0 4522 4655 332086458 332086325 7.460000e-55 226.0
111 TraesCS3B01G137500 chr6B 97.692 130 3 0 4522 4651 207511027 207510898 2.680000e-54 224.0
112 TraesCS3B01G137500 chr6B 95.035 141 6 1 4508 4648 171052241 171052380 3.470000e-53 220.0
113 TraesCS3B01G137500 chr5A 81.188 202 28 7 1 195 580407931 580408129 3.570000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G137500 chr3B 123024687 123032077 7390 True 13649.000000 13649 100.000000 1 7391 1 chr3B.!!$R1 7390
1 TraesCS3B01G137500 chr3B 19363552 19364099 547 False 390.000000 390 79.966000 128 704 1 chr3B.!!$F1 576
2 TraesCS3B01G137500 chr3A 90298302 90305394 7092 True 2814.750000 7044 95.552750 118 7390 4 chr3A.!!$R1 7272
3 TraesCS3B01G137500 chr3D 75952042 75960708 8666 True 1957.666667 3744 93.336667 1 7387 6 chr3D.!!$R5 7386
4 TraesCS3B01G137500 chr3D 112324634 112325240 606 True 218.500000 222 78.139500 43 634 2 chr3D.!!$R6 591
5 TraesCS3B01G137500 chr7D 403802523 403803131 608 False 379.000000 379 78.683000 8 624 1 chr7D.!!$F3 616
6 TraesCS3B01G137500 chr7D 577255777 577256358 581 True 327.000000 327 77.451000 119 718 1 chr7D.!!$R5 599
7 TraesCS3B01G137500 chr4B 444360916 444361507 591 True 329.000000 329 77.430000 118 703 1 chr4B.!!$R1 585
8 TraesCS3B01G137500 chr2B 464901644 464902215 571 True 326.000000 326 77.504000 118 719 1 chr2B.!!$R2 601
9 TraesCS3B01G137500 chr1A 112990648 112991191 543 True 311.000000 311 77.778000 76 624 1 chr1A.!!$R1 548
10 TraesCS3B01G137500 chr1D 106512552 106513062 510 False 202.000000 202 74.576000 8 524 1 chr1D.!!$F4 516
11 TraesCS3B01G137500 chrUn 335647149 335647675 526 False 202.000000 272 77.898500 3 613 2 chrUn.!!$F5 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 1396 1.944024 CGAGATATAGGGGCGCTCTAG 59.056 57.143 7.48 0.00 0.00 2.43 F
1202 2993 0.914644 CTCTGCCCCAGGATTTCAGA 59.085 55.000 0.00 0.00 33.35 3.27 F
1540 3331 1.136891 CGGGATTTGAGAATTTGCCCC 59.863 52.381 0.00 0.00 0.00 5.80 F
2103 3905 1.009389 GCCGCCGATCCGATTCTTAG 61.009 60.000 0.00 0.00 0.00 2.18 F
2842 4644 2.093890 TGCCATGTTACCTTCATGCAG 58.906 47.619 0.00 0.00 40.63 4.41 F
4535 6733 0.536687 TATGCTACTCCCTCCGTCGG 60.537 60.000 4.39 4.39 0.00 4.79 F
5165 7363 0.107831 GACTTGCCACCAGTGTACCA 59.892 55.000 0.00 0.00 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 3692 0.681243 ATTCCTTCTTGAAGGCGGCC 60.681 55.000 21.16 12.11 39.80 6.13 R
2021 3823 1.299541 GTCCATTGCGGTCTATGTGG 58.700 55.000 0.00 0.00 35.57 4.17 R
2854 5051 2.203401 GCACAGACATGCATCTCTCTC 58.797 52.381 0.90 0.00 45.39 3.20 R
3888 6085 0.179026 CTGCATCATCAGGACCAGGG 60.179 60.000 0.00 0.00 0.00 4.45 R
4631 6829 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30 R
5407 7607 1.820519 GAAATGCCTGTGCCTCAATGA 59.179 47.619 0.00 0.00 36.33 2.57 R
6676 8883 0.972471 GATGGCCAGGTGGGGAAAAG 60.972 60.000 13.05 0.00 37.04 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 256 9.912634 AAACACATGGTCAACATTTTTCTATAG 57.087 29.630 0.00 0.00 37.84 1.31
350 890 9.993881 CATTTTTCGAATACTTGTTCAACATTC 57.006 29.630 0.00 0.00 0.00 2.67
625 1176 8.674263 TTCCAAATGCTTGTTCAACATTTTAT 57.326 26.923 15.80 0.00 40.94 1.40
626 1177 8.674263 TCCAAATGCTTGTTCAACATTTTATT 57.326 26.923 15.80 0.00 40.94 1.40
798 1368 2.123640 GAGCCGCCCTAGGTCTCT 60.124 66.667 8.29 0.00 34.14 3.10
826 1396 1.944024 CGAGATATAGGGGCGCTCTAG 59.056 57.143 7.48 0.00 0.00 2.43
900 2691 2.301505 CGCAGCGGATACTTCAAGG 58.698 57.895 7.00 0.00 0.00 3.61
1202 2993 0.914644 CTCTGCCCCAGGATTTCAGA 59.085 55.000 0.00 0.00 33.35 3.27
1223 3014 2.280628 CCGTTTGCCTCCTATTCTCAC 58.719 52.381 0.00 0.00 0.00 3.51
1233 3024 1.611491 CCTATTCTCACTCCGAGGCTC 59.389 57.143 3.87 3.87 42.55 4.70
1287 3078 3.438017 TTTGTGCTTTGCGGGTGCC 62.438 57.895 0.00 0.00 41.78 5.01
1303 3094 2.750888 GCCCGCAGTGAAATCGTCC 61.751 63.158 0.00 0.00 0.00 4.79
1309 3100 3.490249 CCGCAGTGAAATCGTCCATACTA 60.490 47.826 0.00 0.00 0.00 1.82
1540 3331 1.136891 CGGGATTTGAGAATTTGCCCC 59.863 52.381 0.00 0.00 0.00 5.80
1541 3332 2.187100 GGGATTTGAGAATTTGCCCCA 58.813 47.619 0.00 0.00 29.88 4.96
1671 3462 3.746751 GCAGAATGGATGCAGGACATAGT 60.747 47.826 0.00 0.00 43.31 2.12
1678 3469 5.263599 TGGATGCAGGACATAGTTTTGATT 58.736 37.500 0.00 0.00 39.84 2.57
1679 3470 6.422333 TGGATGCAGGACATAGTTTTGATTA 58.578 36.000 0.00 0.00 39.84 1.75
1725 3516 4.247380 CCCTCGGCCTCTGCATCC 62.247 72.222 0.00 0.00 40.13 3.51
1785 3578 8.811378 CAGCTTACAAAGAGGAAAAAGAAAAAG 58.189 33.333 0.00 0.00 0.00 2.27
1983 3785 2.200092 GGGTTGCCCTTCCCAACA 59.800 61.111 6.60 0.00 43.24 3.33
2021 3823 4.704833 TGCCTCGGCCTTCAGTGC 62.705 66.667 0.00 0.92 41.09 4.40
2103 3905 1.009389 GCCGCCGATCCGATTCTTAG 61.009 60.000 0.00 0.00 0.00 2.18
2329 4131 7.269316 TGTTGATGCTATTTCCGATTACACTA 58.731 34.615 0.00 0.00 0.00 2.74
2472 4274 3.119708 GCCAGCTTTTGAGTCTGTTATGG 60.120 47.826 0.00 0.00 0.00 2.74
2562 4364 2.919772 TCTGTGATCCCAGTCCACTA 57.080 50.000 5.05 0.00 34.02 2.74
2842 4644 2.093890 TGCCATGTTACCTTCATGCAG 58.906 47.619 0.00 0.00 40.63 4.41
2848 5045 6.128172 GCCATGTTACCTTCATGCAGATATAC 60.128 42.308 0.00 0.00 40.63 1.47
3581 5778 6.018751 CAGGATGTTTGTATGTGTTATCTCGG 60.019 42.308 0.00 0.00 0.00 4.63
3737 5934 3.743521 TCAGGTCTGACTTGTTTCATGG 58.256 45.455 17.89 0.00 34.14 3.66
3943 6140 4.154015 TCAATGACATGCTTTTACCTGACG 59.846 41.667 0.00 0.00 0.00 4.35
3957 6154 3.693807 ACCTGACGACTACTGTTATCCA 58.306 45.455 0.00 0.00 0.00 3.41
3966 6163 5.867174 CGACTACTGTTATCCACATGTTTGA 59.133 40.000 0.00 0.00 33.76 2.69
4079 6277 8.770438 TCCATGCTATTTAACCAATGAAAAAC 57.230 30.769 0.00 0.00 0.00 2.43
4511 6709 1.200948 GCCACTCTCCTTTCATGTTGC 59.799 52.381 0.00 0.00 0.00 4.17
4533 6731 5.000012 CATATTATGCTACTCCCTCCGTC 58.000 47.826 0.00 0.00 0.00 4.79
4534 6732 1.315690 TTATGCTACTCCCTCCGTCG 58.684 55.000 0.00 0.00 0.00 5.12
4535 6733 0.536687 TATGCTACTCCCTCCGTCGG 60.537 60.000 4.39 4.39 0.00 4.79
4536 6734 3.217743 GCTACTCCCTCCGTCGGG 61.218 72.222 12.29 1.87 46.13 5.14
4545 6743 1.935933 CCTCCGTCGGGAAATACTTG 58.064 55.000 12.29 0.00 43.27 3.16
4546 6744 1.206371 CCTCCGTCGGGAAATACTTGT 59.794 52.381 12.29 0.00 43.27 3.16
4547 6745 2.537401 CTCCGTCGGGAAATACTTGTC 58.463 52.381 12.29 0.00 43.27 3.18
4548 6746 1.894466 TCCGTCGGGAAATACTTGTCA 59.106 47.619 12.29 0.00 40.15 3.58
4549 6747 2.498481 TCCGTCGGGAAATACTTGTCAT 59.502 45.455 12.29 0.00 40.15 3.06
4550 6748 2.864343 CCGTCGGGAAATACTTGTCATC 59.136 50.000 2.34 0.00 34.06 2.92
4551 6749 3.517602 CGTCGGGAAATACTTGTCATCA 58.482 45.455 0.00 0.00 0.00 3.07
4552 6750 3.930229 CGTCGGGAAATACTTGTCATCAA 59.070 43.478 0.00 0.00 0.00 2.57
4553 6751 4.390603 CGTCGGGAAATACTTGTCATCAAA 59.609 41.667 0.00 0.00 32.87 2.69
4554 6752 5.106869 CGTCGGGAAATACTTGTCATCAAAA 60.107 40.000 0.00 0.00 32.87 2.44
4555 6753 6.403200 CGTCGGGAAATACTTGTCATCAAAAT 60.403 38.462 0.00 0.00 32.87 1.82
4556 6754 6.747280 GTCGGGAAATACTTGTCATCAAAATG 59.253 38.462 0.00 0.00 32.87 2.32
4557 6755 6.035843 CGGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
4558 6756 6.127758 CGGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
4559 6757 7.416664 CGGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
4560 6758 8.912988 GGGAAATACTTGTCATCAAAATGGATA 58.087 33.333 0.00 0.00 33.42 2.59
4566 6764 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
4567 6765 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
4568 6766 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
4569 6767 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
4570 6768 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
4571 6769 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
4572 6770 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
4573 6771 8.873144 CATCAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
4574 6772 8.477419 TCAAAATGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
4575 6773 8.288812 TCAAAATGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
4576 6774 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
4577 6775 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
4578 6776 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
4579 6777 7.554959 TGGATAAAAGGGGATGTATCTAGAC 57.445 40.000 0.00 0.00 0.00 2.59
4580 6778 6.210784 TGGATAAAAGGGGATGTATCTAGACG 59.789 42.308 0.00 0.00 0.00 4.18
4581 6779 6.210984 GGATAAAAGGGGATGTATCTAGACGT 59.789 42.308 0.00 0.00 0.00 4.34
4582 6780 7.395489 GGATAAAAGGGGATGTATCTAGACGTA 59.605 40.741 0.00 0.00 0.00 3.57
4583 6781 8.896722 ATAAAAGGGGATGTATCTAGACGTAT 57.103 34.615 0.00 0.00 0.00 3.06
4584 6782 7.613551 AAAAGGGGATGTATCTAGACGTATT 57.386 36.000 0.00 0.00 0.00 1.89
4585 6783 7.613551 AAAGGGGATGTATCTAGACGTATTT 57.386 36.000 0.00 0.00 0.00 1.40
4586 6784 7.613551 AAGGGGATGTATCTAGACGTATTTT 57.386 36.000 0.00 0.00 0.00 1.82
4587 6785 8.716674 AAGGGGATGTATCTAGACGTATTTTA 57.283 34.615 0.00 0.00 0.00 1.52
4588 6786 8.350852 AGGGGATGTATCTAGACGTATTTTAG 57.649 38.462 0.00 0.00 0.00 1.85
4589 6787 7.949006 AGGGGATGTATCTAGACGTATTTTAGT 59.051 37.037 0.00 0.00 0.00 2.24
4590 6788 8.583296 GGGGATGTATCTAGACGTATTTTAGTT 58.417 37.037 0.00 0.00 0.00 2.24
4591 6789 9.623350 GGGATGTATCTAGACGTATTTTAGTTC 57.377 37.037 0.00 0.00 0.00 3.01
4627 6825 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
4634 6832 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4635 6833 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4636 6834 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4637 6835 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4638 6836 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4639 6837 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
4640 6838 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
4641 6839 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
4642 6840 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4643 6841 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4644 6842 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
4645 6843 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
4723 6921 1.352352 AGTCTCCATGGTGACCTTTGG 59.648 52.381 33.10 15.36 38.83 3.28
4748 6946 6.407299 GCCAACCACCATCAATTTCTATGAAT 60.407 38.462 0.00 0.00 0.00 2.57
4751 6949 7.722949 ACCACCATCAATTTCTATGAATGTT 57.277 32.000 0.00 0.00 0.00 2.71
4752 6950 8.821686 ACCACCATCAATTTCTATGAATGTTA 57.178 30.769 0.00 0.00 0.00 2.41
4753 6951 8.686334 ACCACCATCAATTTCTATGAATGTTAC 58.314 33.333 0.00 0.00 0.00 2.50
4754 6952 8.906867 CCACCATCAATTTCTATGAATGTTACT 58.093 33.333 0.00 0.00 0.00 2.24
4755 6953 9.941664 CACCATCAATTTCTATGAATGTTACTC 57.058 33.333 0.00 0.00 0.00 2.59
4756 6954 9.125026 ACCATCAATTTCTATGAATGTTACTCC 57.875 33.333 0.00 0.00 0.00 3.85
4757 6955 8.571336 CCATCAATTTCTATGAATGTTACTCCC 58.429 37.037 0.00 0.00 0.00 4.30
4758 6956 9.347240 CATCAATTTCTATGAATGTTACTCCCT 57.653 33.333 0.00 0.00 0.00 4.20
4759 6957 8.964476 TCAATTTCTATGAATGTTACTCCCTC 57.036 34.615 0.00 0.00 0.00 4.30
4760 6958 7.993183 TCAATTTCTATGAATGTTACTCCCTCC 59.007 37.037 0.00 0.00 0.00 4.30
4761 6959 5.531122 TTCTATGAATGTTACTCCCTCCG 57.469 43.478 0.00 0.00 0.00 4.63
4762 6960 4.543689 TCTATGAATGTTACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
4763 6961 4.960469 TCTATGAATGTTACTCCCTCCGTT 59.040 41.667 0.00 0.00 0.00 4.44
4764 6962 3.604875 TGAATGTTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
4765 6963 2.235402 TGAATGTTACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
4766 6964 2.249309 ATGTTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
4767 6965 2.905415 TGTTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
4768 6966 3.173953 TGTTACTCCCTCCGTTCCTAA 57.826 47.619 0.00 0.00 0.00 2.69
4769 6967 3.509442 TGTTACTCCCTCCGTTCCTAAA 58.491 45.455 0.00 0.00 0.00 1.85
4770 6968 4.098894 TGTTACTCCCTCCGTTCCTAAAT 58.901 43.478 0.00 0.00 0.00 1.40
4771 6969 5.271598 TGTTACTCCCTCCGTTCCTAAATA 58.728 41.667 0.00 0.00 0.00 1.40
4772 6970 5.901276 TGTTACTCCCTCCGTTCCTAAATAT 59.099 40.000 0.00 0.00 0.00 1.28
4773 6971 7.068702 TGTTACTCCCTCCGTTCCTAAATATA 58.931 38.462 0.00 0.00 0.00 0.86
4774 6972 7.564660 TGTTACTCCCTCCGTTCCTAAATATAA 59.435 37.037 0.00 0.00 0.00 0.98
4775 6973 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4776 6974 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4777 6975 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4778 6976 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4779 6977 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4780 6978 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4781 6979 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4782 6980 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4799 6997 9.750125 AAGTCTTTTTAGACATTTCAAATGGTC 57.250 29.630 14.70 9.26 41.02 4.02
4800 6998 9.136323 AGTCTTTTTAGACATTTCAAATGGTCT 57.864 29.630 14.70 15.05 42.76 3.85
4805 7003 9.959749 TTTTAGACATTTCAAATGGTCTACAAC 57.040 29.630 14.70 0.00 41.21 3.32
4806 7004 8.684386 TTAGACATTTCAAATGGTCTACAACA 57.316 30.769 14.70 2.66 41.21 3.33
4807 7005 7.765695 AGACATTTCAAATGGTCTACAACAT 57.234 32.000 14.70 0.00 38.74 2.71
4808 7006 8.862325 AGACATTTCAAATGGTCTACAACATA 57.138 30.769 14.70 0.00 38.74 2.29
4809 7007 8.730680 AGACATTTCAAATGGTCTACAACATAC 58.269 33.333 14.70 0.00 38.74 2.39
4810 7008 7.526608 ACATTTCAAATGGTCTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
4811 7009 6.489127 TTTCAAATGGTCTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
4812 7010 5.408880 TCAAATGGTCTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
4813 7011 5.984725 TCAAATGGTCTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
4814 7012 5.815222 TCAAATGGTCTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
4816 7014 6.474140 AATGGTCTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
4817 7015 6.665992 ATGGTCTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
4843 7041 9.817809 TGTAGACATATTTTAGAGTGTGGATTC 57.182 33.333 0.00 0.00 0.00 2.52
4844 7042 9.817809 GTAGACATATTTTAGAGTGTGGATTCA 57.182 33.333 0.00 0.00 0.00 2.57
4845 7043 8.723942 AGACATATTTTAGAGTGTGGATTCAC 57.276 34.615 0.00 0.00 43.87 3.18
4854 7052 4.510038 AGTGTGGATTCACTCATTTTGC 57.490 40.909 5.55 0.00 44.07 3.68
4855 7053 4.147321 AGTGTGGATTCACTCATTTTGCT 58.853 39.130 5.55 0.00 44.07 3.91
4856 7054 4.586001 AGTGTGGATTCACTCATTTTGCTT 59.414 37.500 5.55 0.00 44.07 3.91
4857 7055 4.919754 GTGTGGATTCACTCATTTTGCTTC 59.080 41.667 5.55 0.00 43.94 3.86
4858 7056 4.161333 GTGGATTCACTCATTTTGCTTCG 58.839 43.478 0.00 0.00 40.58 3.79
4859 7057 3.820467 TGGATTCACTCATTTTGCTTCGT 59.180 39.130 0.00 0.00 0.00 3.85
4860 7058 5.000591 TGGATTCACTCATTTTGCTTCGTA 58.999 37.500 0.00 0.00 0.00 3.43
4861 7059 5.647658 TGGATTCACTCATTTTGCTTCGTAT 59.352 36.000 0.00 0.00 0.00 3.06
4862 7060 5.967674 GGATTCACTCATTTTGCTTCGTATG 59.032 40.000 0.00 0.00 0.00 2.39
4863 7061 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
4864 7062 7.201609 GGATTCACTCATTTTGCTTCGTATGTA 60.202 37.037 0.00 0.00 0.00 2.29
4865 7063 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
4866 7064 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
4867 7065 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
4868 7066 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
4869 7067 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
4870 7068 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
4871 7069 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
4872 7070 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
4873 7071 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
4874 7072 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
4875 7073 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
4876 7074 4.091509 GCTTCGTATGTAGTCACTTGTTGG 59.908 45.833 0.00 0.00 0.00 3.77
4877 7075 5.456548 TTCGTATGTAGTCACTTGTTGGA 57.543 39.130 0.00 0.00 0.00 3.53
4878 7076 5.456548 TCGTATGTAGTCACTTGTTGGAA 57.543 39.130 0.00 0.00 0.00 3.53
4879 7077 6.032956 TCGTATGTAGTCACTTGTTGGAAT 57.967 37.500 0.00 0.00 0.00 3.01
4880 7078 6.097356 TCGTATGTAGTCACTTGTTGGAATC 58.903 40.000 0.00 0.00 0.00 2.52
4881 7079 6.071560 TCGTATGTAGTCACTTGTTGGAATCT 60.072 38.462 0.00 0.00 0.00 2.40
4882 7080 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
4883 7081 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
4884 7082 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
4885 7083 7.297936 TGTAGTCACTTGTTGGAATCTCTAA 57.702 36.000 0.00 0.00 0.00 2.10
4886 7084 7.732025 TGTAGTCACTTGTTGGAATCTCTAAA 58.268 34.615 0.00 0.00 0.00 1.85
4887 7085 8.208224 TGTAGTCACTTGTTGGAATCTCTAAAA 58.792 33.333 0.00 0.00 0.00 1.52
4888 7086 9.052759 GTAGTCACTTGTTGGAATCTCTAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
4889 7087 8.159344 AGTCACTTGTTGGAATCTCTAAAAAG 57.841 34.615 2.17 2.17 37.94 2.27
4890 7088 7.993183 AGTCACTTGTTGGAATCTCTAAAAAGA 59.007 33.333 9.03 0.00 35.06 2.52
4891 7089 8.070769 GTCACTTGTTGGAATCTCTAAAAAGAC 58.929 37.037 9.03 0.00 35.06 3.01
4892 7090 7.993183 TCACTTGTTGGAATCTCTAAAAAGACT 59.007 33.333 9.03 0.00 35.06 3.24
4893 7091 8.624776 CACTTGTTGGAATCTCTAAAAAGACTT 58.375 33.333 9.03 0.00 35.06 3.01
4894 7092 9.847224 ACTTGTTGGAATCTCTAAAAAGACTTA 57.153 29.630 9.03 0.00 35.06 2.24
4907 7105 9.169592 TCTAAAAAGACTTATATTTGGGAACGG 57.830 33.333 0.00 0.00 0.00 4.44
4908 7106 9.169592 CTAAAAAGACTTATATTTGGGAACGGA 57.830 33.333 0.00 0.00 0.00 4.69
4909 7107 7.625828 AAAAGACTTATATTTGGGAACGGAG 57.374 36.000 0.00 0.00 0.00 4.63
4910 7108 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
4911 7109 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
4912 7110 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
4913 7111 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
5093 7291 6.636454 TTTGTAATCAGAGGGAGTACCAAT 57.364 37.500 0.00 0.00 44.40 3.16
5165 7363 0.107831 GACTTGCCACCAGTGTACCA 59.892 55.000 0.00 0.00 0.00 3.25
5237 7435 7.542890 AGATATCTCTATACGATTGCAACAGG 58.457 38.462 0.00 0.00 0.00 4.00
5238 7436 5.537300 ATCTCTATACGATTGCAACAGGT 57.463 39.130 0.00 2.41 0.00 4.00
5239 7437 6.650427 ATCTCTATACGATTGCAACAGGTA 57.350 37.500 0.00 4.86 0.00 3.08
5240 7438 6.073327 TCTCTATACGATTGCAACAGGTAG 57.927 41.667 0.00 6.35 0.00 3.18
5241 7439 5.826208 TCTCTATACGATTGCAACAGGTAGA 59.174 40.000 0.00 9.94 0.00 2.59
5242 7440 6.490381 TCTCTATACGATTGCAACAGGTAGAT 59.510 38.462 0.00 0.00 0.00 1.98
5243 7441 6.678878 TCTATACGATTGCAACAGGTAGATC 58.321 40.000 0.00 0.00 0.00 2.75
5244 7442 2.906354 ACGATTGCAACAGGTAGATCC 58.094 47.619 0.00 0.00 0.00 3.36
5301 7499 5.306937 TGGTCTACCAATATCCATACTGTGG 59.693 44.000 0.00 0.00 45.98 4.17
5387 7585 3.067040 GGTTTAGTTTTCCGAACTTGCCA 59.933 43.478 0.00 0.00 0.00 4.92
5397 7595 3.004315 TCCGAACTTGCCAGATTTTTCAC 59.996 43.478 0.00 0.00 0.00 3.18
5407 7607 4.082026 GCCAGATTTTTCACCAGTGCTATT 60.082 41.667 0.00 0.00 0.00 1.73
5480 7680 5.836821 TGCCAACTGAGACTACTGTATAG 57.163 43.478 0.00 0.00 0.00 1.31
5525 7725 8.988934 CGTATACTACAAACTATGGCATTCATT 58.011 33.333 4.78 0.00 37.30 2.57
6068 8268 9.277783 ACCTTCTGCTGTATAAATATCATCAAC 57.722 33.333 0.00 0.00 0.00 3.18
6102 8302 3.577649 TGTTTCCTGACTCTAGCTTCG 57.422 47.619 0.00 0.00 0.00 3.79
6115 8317 5.990386 ACTCTAGCTTCGATGAATACGTCTA 59.010 40.000 1.89 0.00 0.00 2.59
6149 8351 7.332926 ACTTGTTGAACATGCACAAAACATAAA 59.667 29.630 10.66 0.00 0.00 1.40
6402 8607 8.840321 GCATTAGAAAGCTAATATTGAAGGTGA 58.160 33.333 0.00 0.00 43.67 4.02
6557 8762 2.823924 TGCAAGCATGACAAAGCAAT 57.176 40.000 0.00 0.00 0.00 3.56
6560 8765 3.259064 GCAAGCATGACAAAGCAATGAT 58.741 40.909 0.00 0.00 0.00 2.45
6676 8883 6.074142 CGTAGTGTTTGTTACTTGTTAGGGTC 60.074 42.308 0.00 0.00 0.00 4.46
6857 9064 7.391833 AGTTCAGACCTATTGCTTTCTAAAAGG 59.608 37.037 1.96 0.00 0.00 3.11
6974 9339 1.880027 CCACTCTGCACAAACCCTTAC 59.120 52.381 0.00 0.00 0.00 2.34
7019 9384 6.012337 TGTTGGCCTCCTGATCAAATTATA 57.988 37.500 3.32 0.00 0.00 0.98
7083 9449 0.320697 AGTGGCGAGTCCAGTTAACC 59.679 55.000 0.88 0.00 46.28 2.85
7124 9490 1.338973 CACATGCACTTGTTGGCTTCT 59.661 47.619 0.00 0.00 0.00 2.85
7165 9531 4.455877 CGTTGAGAGCTTAAAGGGTTGAAT 59.544 41.667 0.00 0.00 0.00 2.57
7205 9571 1.010580 TTCGATTGTGTGTGTTGCGT 58.989 45.000 0.00 0.00 0.00 5.24
7206 9572 1.010580 TCGATTGTGTGTGTTGCGTT 58.989 45.000 0.00 0.00 0.00 4.84
7207 9573 1.111667 CGATTGTGTGTGTTGCGTTG 58.888 50.000 0.00 0.00 0.00 4.10
7208 9574 0.845768 GATTGTGTGTGTTGCGTTGC 59.154 50.000 0.00 0.00 0.00 4.17
7209 9575 0.865218 ATTGTGTGTGTTGCGTTGCG 60.865 50.000 0.00 0.00 0.00 4.85
7210 9576 2.099446 GTGTGTGTTGCGTTGCGT 59.901 55.556 0.00 0.00 0.00 5.24
7268 9634 5.241506 TCCATTTCTAGTTTTTGGAGCACAG 59.758 40.000 0.00 0.00 32.80 3.66
7327 9696 1.666311 GCTATCTACCATCGTCCGTGC 60.666 57.143 0.00 0.00 0.00 5.34
7349 9718 2.588877 CCAATCCTAGCCGCCACG 60.589 66.667 0.00 0.00 0.00 4.94
7366 9735 1.821332 CGGAAGGCCTTCTCCATGC 60.821 63.158 37.72 22.48 39.45 4.06
7367 9736 1.821332 GGAAGGCCTTCTCCATGCG 60.821 63.158 37.72 0.00 39.45 4.73
7390 9759 0.539518 GCCTTGGTCCTCCTCTCTTC 59.460 60.000 0.00 0.00 34.23 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 8.706035 CAAGGATTTGAGAAAATGTTTGATGTC 58.294 33.333 0.00 0.00 36.36 3.06
721 1282 0.962855 GAGCCCACAGCCTCTTTTCC 60.963 60.000 0.00 0.00 45.47 3.13
761 1330 1.676967 CTGAAGGGCAGGCCAAGAC 60.677 63.158 16.94 0.00 41.07 3.01
798 1368 2.808919 CCCCTATATCTCGCCTTCAGA 58.191 52.381 0.00 0.00 0.00 3.27
1186 2977 1.691219 GGTCTGAAATCCTGGGGCA 59.309 57.895 0.00 0.00 0.00 5.36
1202 2993 1.906574 TGAGAATAGGAGGCAAACGGT 59.093 47.619 0.00 0.00 0.00 4.83
1223 3014 0.319383 CATGAATCGGAGCCTCGGAG 60.319 60.000 8.04 0.00 0.00 4.63
1233 3024 2.420022 GTGAGAACCAACCATGAATCGG 59.580 50.000 0.00 0.00 0.00 4.18
1287 3078 1.593006 GTATGGACGATTTCACTGCGG 59.407 52.381 0.00 0.00 0.00 5.69
1303 3094 1.281960 CGCGTCCCGGTCTAGTATG 59.718 63.158 0.00 0.00 0.00 2.39
1540 3331 5.063204 TCAACACCCAAGACTTAAGACATG 58.937 41.667 10.09 6.33 0.00 3.21
1541 3332 5.304686 TCAACACCCAAGACTTAAGACAT 57.695 39.130 10.09 0.00 0.00 3.06
1638 3429 4.807304 GCATCCATTCTGCAAATTACCAAG 59.193 41.667 0.00 0.00 39.46 3.61
1687 3478 3.502595 GGTCTTCCCCTCTTTTCGAAAAG 59.497 47.826 34.61 34.61 45.17 2.27
1689 3480 3.136009 GGTCTTCCCCTCTTTTCGAAA 57.864 47.619 6.47 6.47 0.00 3.46
1690 3481 2.853235 GGTCTTCCCCTCTTTTCGAA 57.147 50.000 0.00 0.00 0.00 3.71
1725 3516 4.614306 CGTTATTGGCCATATGCATCACTG 60.614 45.833 6.09 0.00 43.89 3.66
1737 3528 1.880271 TTGTTCGACGTTATTGGCCA 58.120 45.000 0.00 0.00 0.00 5.36
1785 3578 7.159372 TCCTATGTGGACAGTCTTAACTTTTC 58.841 38.462 0.00 0.00 40.56 2.29
1882 3684 1.852157 TTGAAGGCGGCCTCTTGGAT 61.852 55.000 24.08 4.92 30.89 3.41
1890 3692 0.681243 ATTCCTTCTTGAAGGCGGCC 60.681 55.000 21.16 12.11 39.80 6.13
1911 3713 0.981183 TTAGACCAGCCAACATCGGT 59.019 50.000 0.00 0.00 0.00 4.69
1983 3785 4.250305 AAGTCCACGCCGGCTGTT 62.250 61.111 26.68 5.42 33.14 3.16
2021 3823 1.299541 GTCCATTGCGGTCTATGTGG 58.700 55.000 0.00 0.00 35.57 4.17
2070 3872 1.521681 GCGGCGCTTCCATCTAACT 60.522 57.895 26.86 0.00 34.01 2.24
2103 3905 5.948992 AAAACACTAAGCTCCATCAACTC 57.051 39.130 0.00 0.00 0.00 3.01
2472 4274 4.936891 ACCTCACAACTTTCATTTTCAGC 58.063 39.130 0.00 0.00 0.00 4.26
2848 5045 7.030768 CACAGACATGCATCTCTCTCTATATG 58.969 42.308 0.90 0.00 0.00 1.78
2854 5051 2.203401 GCACAGACATGCATCTCTCTC 58.797 52.381 0.90 0.00 45.39 3.20
3032 5229 4.641989 AGGAAAGCGATGCACTTATTTGAT 59.358 37.500 0.00 0.00 0.00 2.57
3581 5778 4.342665 CCAACTTCTCCATAGTCTACTCCC 59.657 50.000 0.00 0.00 0.00 4.30
3762 5959 2.225491 TCTTCGATTGGGAAAGCAAACG 59.775 45.455 0.00 0.00 0.00 3.60
3888 6085 0.179026 CTGCATCATCAGGACCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
3943 6140 7.849804 ATCAAACATGTGGATAACAGTAGTC 57.150 36.000 10.63 0.00 43.64 2.59
3957 6154 5.813672 GGATATTGCAGCAAATCAAACATGT 59.186 36.000 12.97 0.00 0.00 3.21
3966 6163 8.514330 AAATGAAATTGGATATTGCAGCAAAT 57.486 26.923 12.97 7.19 36.10 2.32
4079 6277 6.149142 GCTCATTCCTAATCCTATTGCAGAAG 59.851 42.308 0.00 0.00 0.00 2.85
4480 6678 3.928754 AGGAGAGTGGCATCACCTAATA 58.071 45.455 11.89 0.00 44.64 0.98
4511 6709 4.438880 CGACGGAGGGAGTAGCATAATATG 60.439 50.000 0.00 0.00 0.00 1.78
4526 6724 1.206371 ACAAGTATTTCCCGACGGAGG 59.794 52.381 17.49 0.00 40.10 4.30
4527 6725 2.094390 TGACAAGTATTTCCCGACGGAG 60.094 50.000 17.49 5.68 40.10 4.63
4528 6726 1.894466 TGACAAGTATTTCCCGACGGA 59.106 47.619 17.49 0.00 35.88 4.69
4529 6727 2.373540 TGACAAGTATTTCCCGACGG 57.626 50.000 6.99 6.99 0.00 4.79
4530 6728 3.517602 TGATGACAAGTATTTCCCGACG 58.482 45.455 0.00 0.00 0.00 5.12
4531 6729 5.873179 TTTGATGACAAGTATTTCCCGAC 57.127 39.130 0.00 0.00 37.32 4.79
4532 6730 6.127758 CCATTTTGATGACAAGTATTTCCCGA 60.128 38.462 0.00 0.00 37.32 5.14
4533 6731 6.035843 CCATTTTGATGACAAGTATTTCCCG 58.964 40.000 0.00 0.00 37.32 5.14
4534 6732 7.169158 TCCATTTTGATGACAAGTATTTCCC 57.831 36.000 0.00 0.00 37.32 3.97
4540 6738 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
4541 6739 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
4542 6740 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
4543 6741 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
4544 6742 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
4545 6743 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
4546 6744 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
4547 6745 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
4548 6746 9.093458 GATACATCCCCTTTTATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
4549 6747 8.288812 AGATACATCCCCTTTTATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
4550 6748 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
4551 6749 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
4552 6750 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
4553 6751 8.606830 GTCTAGATACATCCCCTTTTATCCATT 58.393 37.037 0.00 0.00 0.00 3.16
4554 6752 7.093289 CGTCTAGATACATCCCCTTTTATCCAT 60.093 40.741 0.00 0.00 0.00 3.41
4555 6753 6.210784 CGTCTAGATACATCCCCTTTTATCCA 59.789 42.308 0.00 0.00 0.00 3.41
4556 6754 6.210984 ACGTCTAGATACATCCCCTTTTATCC 59.789 42.308 0.00 0.00 0.00 2.59
4557 6755 7.229581 ACGTCTAGATACATCCCCTTTTATC 57.770 40.000 0.00 0.00 0.00 1.75
4558 6756 8.896722 ATACGTCTAGATACATCCCCTTTTAT 57.103 34.615 0.00 0.00 0.00 1.40
4559 6757 8.716674 AATACGTCTAGATACATCCCCTTTTA 57.283 34.615 0.00 0.00 0.00 1.52
4560 6758 7.613551 AATACGTCTAGATACATCCCCTTTT 57.386 36.000 0.00 0.00 0.00 2.27
4561 6759 7.613551 AAATACGTCTAGATACATCCCCTTT 57.386 36.000 0.00 0.00 0.00 3.11
4562 6760 7.613551 AAAATACGTCTAGATACATCCCCTT 57.386 36.000 0.00 0.00 0.00 3.95
4563 6761 7.949006 ACTAAAATACGTCTAGATACATCCCCT 59.051 37.037 0.00 0.00 0.00 4.79
4564 6762 8.120140 ACTAAAATACGTCTAGATACATCCCC 57.880 38.462 0.00 0.00 0.00 4.81
4565 6763 9.623350 GAACTAAAATACGTCTAGATACATCCC 57.377 37.037 0.00 0.00 0.00 3.85
4601 6799 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
4609 6807 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
4610 6808 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4611 6809 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4612 6810 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4613 6811 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4614 6812 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4615 6813 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4616 6814 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4617 6815 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4618 6816 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
4619 6817 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
4620 6818 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
4621 6819 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4622 6820 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4623 6821 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4624 6822 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
4625 6823 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
4626 6824 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4627 6825 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
4628 6826 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
4629 6827 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
4630 6828 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
4631 6829 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
4632 6830 0.750546 CATGTACTCCCTCCGTCCGA 60.751 60.000 0.00 0.00 0.00 4.55
4633 6831 1.035932 ACATGTACTCCCTCCGTCCG 61.036 60.000 0.00 0.00 0.00 4.79
4634 6832 1.192428 AACATGTACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
4635 6833 4.341520 AGAATAACATGTACTCCCTCCGTC 59.658 45.833 0.00 0.00 0.00 4.79
4636 6834 4.287552 AGAATAACATGTACTCCCTCCGT 58.712 43.478 0.00 0.00 0.00 4.69
4637 6835 4.585162 AGAGAATAACATGTACTCCCTCCG 59.415 45.833 0.00 0.00 0.00 4.63
4638 6836 5.598830 TCAGAGAATAACATGTACTCCCTCC 59.401 44.000 0.00 0.00 0.00 4.30
4639 6837 6.716934 TCAGAGAATAACATGTACTCCCTC 57.283 41.667 0.00 3.09 0.00 4.30
4640 6838 7.202047 GGAATCAGAGAATAACATGTACTCCCT 60.202 40.741 0.00 0.00 0.00 4.20
4641 6839 6.931840 GGAATCAGAGAATAACATGTACTCCC 59.068 42.308 0.00 0.00 0.00 4.30
4642 6840 7.500992 TGGAATCAGAGAATAACATGTACTCC 58.499 38.462 0.00 0.00 0.00 3.85
4643 6841 8.948631 TTGGAATCAGAGAATAACATGTACTC 57.051 34.615 0.00 6.48 0.00 2.59
4644 6842 9.911788 ATTTGGAATCAGAGAATAACATGTACT 57.088 29.630 0.00 0.00 0.00 2.73
4645 6843 9.941664 CATTTGGAATCAGAGAATAACATGTAC 57.058 33.333 0.00 0.00 0.00 2.90
4723 6921 4.402155 TCATAGAAATTGATGGTGGTTGGC 59.598 41.667 0.00 0.00 0.00 4.52
4748 6946 2.905415 TAGGAACGGAGGGAGTAACA 57.095 50.000 0.00 0.00 0.00 2.41
4751 6949 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4752 6950 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4753 6951 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4754 6952 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4755 6953 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4756 6954 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4773 6971 9.750125 GACCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
4774 6972 9.136323 AGACCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 2.38 39.41 3.24
4779 6977 9.959749 GTTGTAGACCATTTGAAATGTCTAAAA 57.040 29.630 20.91 19.69 0.00 1.52
4780 6978 9.126151 TGTTGTAGACCATTTGAAATGTCTAAA 57.874 29.630 20.91 16.73 0.00 1.85
4781 6979 8.684386 TGTTGTAGACCATTTGAAATGTCTAA 57.316 30.769 20.91 12.44 0.00 2.10
4782 6980 8.862325 ATGTTGTAGACCATTTGAAATGTCTA 57.138 30.769 15.93 17.14 0.00 2.59
4783 6981 7.765695 ATGTTGTAGACCATTTGAAATGTCT 57.234 32.000 15.93 17.95 0.00 3.41
4784 6982 7.692291 CGTATGTTGTAGACCATTTGAAATGTC 59.308 37.037 15.93 12.82 0.00 3.06
4785 6983 7.361713 CCGTATGTTGTAGACCATTTGAAATGT 60.362 37.037 15.93 5.15 0.00 2.71
4786 6984 6.966632 CCGTATGTTGTAGACCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
4787 6985 6.882140 TCCGTATGTTGTAGACCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
4788 6986 6.231951 TCCGTATGTTGTAGACCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
4789 6987 5.795972 TCCGTATGTTGTAGACCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
4790 6988 5.408880 TCCGTATGTTGTAGACCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
4791 6989 5.584649 ACATCCGTATGTTGTAGACCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
4792 6990 5.741011 ACATCCGTATGTTGTAGACCATTT 58.259 37.500 0.00 0.00 44.07 2.32
4793 6991 5.353394 ACATCCGTATGTTGTAGACCATT 57.647 39.130 0.00 0.00 44.07 3.16
4794 6992 6.455647 CATACATCCGTATGTTGTAGACCAT 58.544 40.000 0.00 0.00 46.70 3.55
4795 6993 5.838529 CATACATCCGTATGTTGTAGACCA 58.161 41.667 0.00 0.00 46.70 4.02
4817 7015 9.817809 GAATCCACACTCTAAAATATGTCTACA 57.182 33.333 0.00 0.00 0.00 2.74
4818 7016 9.817809 TGAATCCACACTCTAAAATATGTCTAC 57.182 33.333 0.00 0.00 0.00 2.59
4819 7017 9.817809 GTGAATCCACACTCTAAAATATGTCTA 57.182 33.333 0.00 0.00 42.72 2.59
4820 7018 8.543774 AGTGAATCCACACTCTAAAATATGTCT 58.456 33.333 0.00 0.00 46.36 3.41
4821 7019 8.723942 AGTGAATCCACACTCTAAAATATGTC 57.276 34.615 0.00 0.00 46.36 3.06
4834 7032 4.510038 AGCAAAATGAGTGAATCCACAC 57.490 40.909 0.00 0.00 45.54 3.82
4835 7033 4.320421 CGAAGCAAAATGAGTGAATCCACA 60.320 41.667 0.00 0.00 45.54 4.17
4836 7034 4.161333 CGAAGCAAAATGAGTGAATCCAC 58.839 43.478 0.00 0.00 43.50 4.02
4837 7035 3.820467 ACGAAGCAAAATGAGTGAATCCA 59.180 39.130 0.00 0.00 0.00 3.41
4838 7036 4.425577 ACGAAGCAAAATGAGTGAATCC 57.574 40.909 0.00 0.00 0.00 3.01
4839 7037 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
4840 7038 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
4841 7039 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
4842 7040 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
4843 7041 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
4844 7042 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
4845 7043 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
4846 7044 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
4847 7045 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
4848 7046 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
4849 7047 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
4850 7048 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
4851 7049 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
4852 7050 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
4853 7051 4.091509 CCAACAAGTGACTACATACGAAGC 59.908 45.833 0.00 0.00 0.00 3.86
4854 7052 5.466819 TCCAACAAGTGACTACATACGAAG 58.533 41.667 0.00 0.00 0.00 3.79
4855 7053 5.456548 TCCAACAAGTGACTACATACGAA 57.543 39.130 0.00 0.00 0.00 3.85
4856 7054 5.456548 TTCCAACAAGTGACTACATACGA 57.543 39.130 0.00 0.00 0.00 3.43
4857 7055 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
4858 7056 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
4859 7057 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
4860 7058 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
4861 7059 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
4862 7060 8.603242 TTTTAGAGATTCCAACAAGTGACTAC 57.397 34.615 0.00 0.00 0.00 2.73
4863 7061 9.273016 CTTTTTAGAGATTCCAACAAGTGACTA 57.727 33.333 0.00 0.00 0.00 2.59
4864 7062 7.993183 TCTTTTTAGAGATTCCAACAAGTGACT 59.007 33.333 0.00 0.00 0.00 3.41
4865 7063 8.070769 GTCTTTTTAGAGATTCCAACAAGTGAC 58.929 37.037 0.00 0.00 0.00 3.67
4866 7064 7.993183 AGTCTTTTTAGAGATTCCAACAAGTGA 59.007 33.333 0.00 0.00 0.00 3.41
4867 7065 8.159344 AGTCTTTTTAGAGATTCCAACAAGTG 57.841 34.615 0.00 0.00 0.00 3.16
4868 7066 8.753497 AAGTCTTTTTAGAGATTCCAACAAGT 57.247 30.769 0.00 0.00 0.00 3.16
4881 7079 9.169592 CCGTTCCCAAATATAAGTCTTTTTAGA 57.830 33.333 0.00 0.00 0.00 2.10
4882 7080 9.169592 TCCGTTCCCAAATATAAGTCTTTTTAG 57.830 33.333 0.00 0.00 0.00 1.85
4883 7081 9.169592 CTCCGTTCCCAAATATAAGTCTTTTTA 57.830 33.333 0.00 0.00 0.00 1.52
4884 7082 7.122204 CCTCCGTTCCCAAATATAAGTCTTTTT 59.878 37.037 0.00 0.00 0.00 1.94
4885 7083 6.602009 CCTCCGTTCCCAAATATAAGTCTTTT 59.398 38.462 0.00 0.00 0.00 2.27
4886 7084 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
4887 7085 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
4888 7086 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
4889 7087 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
4890 7088 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
4891 7089 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
4892 7090 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
4893 7091 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
4894 7092 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
4895 7093 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4896 7094 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
4897 7095 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
4898 7096 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
4899 7097 0.115745 AACTACTCCCTCCGTTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
4900 7098 0.535797 CAACTACTCCCTCCGTTCCC 59.464 60.000 0.00 0.00 0.00 3.97
4901 7099 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
4902 7100 0.896226 AGCAACTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
4903 7101 1.275573 GAAGCAACTACTCCCTCCGTT 59.724 52.381 0.00 0.00 0.00 4.44
4904 7102 0.896226 GAAGCAACTACTCCCTCCGT 59.104 55.000 0.00 0.00 0.00 4.69
4905 7103 0.895530 TGAAGCAACTACTCCCTCCG 59.104 55.000 0.00 0.00 0.00 4.63
4906 7104 4.965200 ATATGAAGCAACTACTCCCTCC 57.035 45.455 0.00 0.00 0.00 4.30
4907 7105 8.732746 TTTTTATATGAAGCAACTACTCCCTC 57.267 34.615 0.00 0.00 0.00 4.30
5093 7291 3.701542 AGAGTCACACTGAGAACAACTGA 59.298 43.478 0.00 0.00 0.00 3.41
5223 7421 3.490249 CGGATCTACCTGTTGCAATCGTA 60.490 47.826 0.59 2.83 36.31 3.43
5226 7424 2.906354 ACGGATCTACCTGTTGCAATC 58.094 47.619 0.59 0.00 36.31 2.67
5237 7435 4.076394 AGCCTCTTCATCTACGGATCTAC 58.924 47.826 0.00 0.00 0.00 2.59
5238 7436 4.374689 AGCCTCTTCATCTACGGATCTA 57.625 45.455 0.00 0.00 0.00 1.98
5239 7437 3.237268 AGCCTCTTCATCTACGGATCT 57.763 47.619 0.00 0.00 0.00 2.75
5240 7438 5.455056 TTAAGCCTCTTCATCTACGGATC 57.545 43.478 0.00 0.00 0.00 3.36
5241 7439 7.015292 TGTTATTAAGCCTCTTCATCTACGGAT 59.985 37.037 0.00 0.00 0.00 4.18
5242 7440 6.322969 TGTTATTAAGCCTCTTCATCTACGGA 59.677 38.462 0.00 0.00 0.00 4.69
5243 7441 6.513180 TGTTATTAAGCCTCTTCATCTACGG 58.487 40.000 0.00 0.00 0.00 4.02
5244 7442 8.594881 ATTGTTATTAAGCCTCTTCATCTACG 57.405 34.615 0.00 0.00 0.00 3.51
5301 7499 2.494059 TGCCAGCTAAGAACACAGTTC 58.506 47.619 1.77 1.77 0.00 3.01
5371 7569 3.643159 AATCTGGCAAGTTCGGAAAAC 57.357 42.857 0.00 0.00 0.00 2.43
5387 7585 7.177216 TCAATGAATAGCACTGGTGAAAAATCT 59.823 33.333 4.79 0.00 0.00 2.40
5397 7595 2.646930 TGCCTCAATGAATAGCACTGG 58.353 47.619 0.00 0.00 0.00 4.00
5407 7607 1.820519 GAAATGCCTGTGCCTCAATGA 59.179 47.619 0.00 0.00 36.33 2.57
5525 7725 9.398538 TGTCTTGATCATGAAATGTCAATATGA 57.601 29.630 12.50 2.69 46.80 2.15
5555 7755 2.023673 TGGCAAGTCCACAAAGTTCAG 58.976 47.619 0.00 0.00 40.72 3.02
5777 7977 6.791303 TGGTTAATTTCTGAACAGTCAACAC 58.209 36.000 1.73 0.00 31.88 3.32
6068 8268 2.965147 AGGAAACATTTCAAGGTGTGGG 59.035 45.455 6.68 0.00 38.92 4.61
6115 8317 8.560355 TGTGCATGTTCAACAAGTATATTAGT 57.440 30.769 0.00 0.00 0.00 2.24
6519 8724 3.243670 TGCAAATTCGCTTCCATGAAACA 60.244 39.130 0.00 0.00 0.00 2.83
6557 8762 4.146564 CAGCACCAATTCCATGGATATCA 58.853 43.478 17.06 0.00 43.54 2.15
6560 8765 3.668141 ACAGCACCAATTCCATGGATA 57.332 42.857 17.06 7.19 43.54 2.59
6676 8883 0.972471 GATGGCCAGGTGGGGAAAAG 60.972 60.000 13.05 0.00 37.04 2.27
6825 9032 8.568794 AGAAAGCAATAGGTCTGAACTAAAAAC 58.431 33.333 6.51 0.00 0.00 2.43
6834 9041 6.779860 ACCTTTTAGAAAGCAATAGGTCTGA 58.220 36.000 0.00 0.00 33.63 3.27
6889 9096 7.281841 TCCTGTGCATTTGATATAACTGATCA 58.718 34.615 0.00 0.00 0.00 2.92
6974 9339 9.878599 CAACAAGTAAAGATTTGTGGTACTAAG 57.121 33.333 0.00 0.00 35.82 2.18
7070 9436 5.181433 GGTTTTGAGATGGTTAACTGGACTC 59.819 44.000 5.42 9.79 0.00 3.36
7083 9449 3.501828 TGTCGATGGTTGGTTTTGAGATG 59.498 43.478 0.00 0.00 0.00 2.90
7124 9490 8.523523 TCTCAACGAGTACATAATTTCGAAAA 57.476 30.769 15.66 0.00 36.89 2.29
7165 9531 6.429692 TCGAAAAGGTAAAAGATGATGCTTCA 59.570 34.615 4.57 4.57 36.00 3.02
7208 9574 8.646414 TGTGCTCACAAGAATGGAATTCAACG 62.646 42.308 7.93 0.00 45.34 4.10
7209 9575 5.507817 TGTGCTCACAAGAATGGAATTCAAC 60.508 40.000 7.93 0.00 45.34 3.18
7210 9576 4.583907 TGTGCTCACAAGAATGGAATTCAA 59.416 37.500 7.93 0.00 45.34 2.69
7268 9634 5.689068 GCTATGCAATTAACTCCAGATTTGC 59.311 40.000 0.00 0.00 0.00 3.68
7327 9696 3.151906 CGGCTAGGATTGGGAGGG 58.848 66.667 0.00 0.00 0.00 4.30
7349 9718 1.821332 CGCATGGAGAAGGCCTTCC 60.821 63.158 36.59 26.51 40.33 3.46
7366 9735 4.452733 GGAGGACCAAGGCGACCG 62.453 72.222 0.00 0.00 35.97 4.79
7367 9736 3.003763 AGGAGGACCAAGGCGACC 61.004 66.667 0.00 0.00 38.94 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.