Multiple sequence alignment - TraesCS3B01G136300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G136300 chr3B 100.000 8881 0 0 1 8881 119082380 119091260 0.000000e+00 16401.0
1 TraesCS3B01G136300 chr3B 98.694 5284 60 8 1218 6493 136490132 136484850 0.000000e+00 9367.0
2 TraesCS3B01G136300 chr3B 79.272 1457 245 43 2004 3420 68403990 68402551 0.000000e+00 965.0
3 TraesCS3B01G136300 chr3B 97.834 277 3 1 394 667 201537776 201538052 8.070000e-130 475.0
4 TraesCS3B01G136300 chr3B 81.546 401 69 5 7526 7922 68399121 68398722 8.600000e-85 326.0
5 TraesCS3B01G136300 chr3D 91.085 3937 284 38 3674 7586 73761005 73764898 0.000000e+00 5264.0
6 TraesCS3B01G136300 chr3D 93.274 2245 122 12 1190 3428 73758785 73761006 0.000000e+00 3282.0
7 TraesCS3B01G136300 chr3D 92.189 1357 84 15 7531 8878 73764897 73766240 0.000000e+00 1899.0
8 TraesCS3B01G136300 chr3D 78.821 1544 258 49 1922 3420 43781238 43782757 0.000000e+00 976.0
9 TraesCS3B01G136300 chr3D 92.330 339 21 3 20 354 73758110 73758447 2.240000e-130 477.0
10 TraesCS3B01G136300 chr3D 90.559 286 12 5 863 1142 73758511 73758787 1.820000e-96 364.0
11 TraesCS3B01G136300 chr3D 84.046 351 52 4 7562 7909 43786270 43786619 1.430000e-87 335.0
12 TraesCS3B01G136300 chr3D 87.008 254 28 3 3428 3676 170773307 170773054 1.890000e-71 281.0
13 TraesCS3B01G136300 chr3D 85.714 252 36 0 3424 3675 609606585 609606836 5.290000e-67 267.0
14 TraesCS3B01G136300 chr3D 93.443 61 4 0 793 853 576747449 576747389 3.410000e-14 91.6
15 TraesCS3B01G136300 chr3A 89.949 3502 288 35 4102 7586 86626618 86630072 0.000000e+00 4458.0
16 TraesCS3B01G136300 chr3A 93.193 2233 138 7 1199 3428 86624011 86626232 0.000000e+00 3269.0
17 TraesCS3B01G136300 chr3A 93.063 1355 83 9 7531 8878 86630071 86631421 0.000000e+00 1971.0
18 TraesCS3B01G136300 chr3A 79.783 1380 228 38 2076 3420 55563414 55562051 0.000000e+00 955.0
19 TraesCS3B01G136300 chr3A 93.333 390 24 2 3674 4061 86626231 86626620 7.730000e-160 575.0
20 TraesCS3B01G136300 chr3A 98.195 277 2 1 394 667 593312943 593313219 1.730000e-131 481.0
21 TraesCS3B01G136300 chr3A 93.333 300 9 7 854 1142 86623708 86624007 4.920000e-117 433.0
22 TraesCS3B01G136300 chr3A 92.713 247 13 4 5 248 86623092 86623336 1.420000e-92 351.0
23 TraesCS3B01G136300 chr3A 83.333 360 58 2 7562 7919 55558531 55558172 1.850000e-86 331.0
24 TraesCS3B01G136300 chr3A 89.712 243 24 1 5158 5399 75031410 75031652 8.660000e-80 309.0
25 TraesCS3B01G136300 chr3A 86.100 259 31 4 3423 3679 657040047 657040302 3.160000e-69 274.0
26 TraesCS3B01G136300 chr3A 100.000 128 0 0 667 794 672876547 672876674 4.140000e-58 237.0
27 TraesCS3B01G136300 chr7B 97.834 277 3 1 394 667 662724659 662724935 8.070000e-130 475.0
28 TraesCS3B01G136300 chr7B 96.540 289 7 1 394 679 663101170 663100882 8.070000e-130 475.0
29 TraesCS3B01G136300 chr7B 94.915 59 3 0 795 853 604782632 604782690 9.490000e-15 93.5
30 TraesCS3B01G136300 chr5D 97.834 277 3 1 394 667 503243527 503243803 8.070000e-130 475.0
31 TraesCS3B01G136300 chr5D 96.540 289 6 2 394 679 503267047 503266760 8.070000e-130 475.0
32 TraesCS3B01G136300 chr5D 74.797 246 53 9 1462 1702 391058971 391058730 1.580000e-17 102.0
33 TraesCS3B01G136300 chr5D 92.683 41 2 1 8513 8553 417372021 417372060 3.460000e-04 58.4
34 TraesCS3B01G136300 chr2A 97.834 277 3 1 394 667 335845567 335845843 8.070000e-130 475.0
35 TraesCS3B01G136300 chr2A 96.540 289 7 1 394 679 726908200 726907912 8.070000e-130 475.0
36 TraesCS3B01G136300 chr2A 86.056 251 35 0 3425 3675 398651764 398652014 4.090000e-68 270.0
37 TraesCS3B01G136300 chr1D 96.540 289 7 1 394 679 254383766 254383478 8.070000e-130 475.0
38 TraesCS3B01G136300 chr1D 93.443 61 4 0 793 853 251295178 251295238 3.410000e-14 91.6
39 TraesCS3B01G136300 chrUn 81.565 575 92 12 2678 3247 471930996 471931561 6.280000e-126 462.0
40 TraesCS3B01G136300 chrUn 83.243 370 58 4 7554 7919 381219413 381219782 3.970000e-88 337.0
41 TraesCS3B01G136300 chrUn 100.000 128 0 0 667 794 371050335 371050208 4.140000e-58 237.0
42 TraesCS3B01G136300 chrUn 100.000 128 0 0 667 794 449932210 449932083 4.140000e-58 237.0
43 TraesCS3B01G136300 chr6A 91.358 243 20 1 5157 5398 601961128 601961370 1.850000e-86 331.0
44 TraesCS3B01G136300 chr2D 89.712 243 23 2 5157 5398 620601550 620601791 8.660000e-80 309.0
45 TraesCS3B01G136300 chr2D 100.000 128 0 0 667 794 33935698 33935571 4.140000e-58 237.0
46 TraesCS3B01G136300 chr2D 100.000 128 0 0 667 794 630272174 630272047 4.140000e-58 237.0
47 TraesCS3B01G136300 chr2D 74.790 238 52 8 1464 1697 589493914 589494147 5.670000e-17 100.0
48 TraesCS3B01G136300 chr2D 93.443 61 4 0 793 853 591362800 591362860 3.410000e-14 91.6
49 TraesCS3B01G136300 chr2D 73.707 232 48 12 1464 1691 524330359 524330581 2.660000e-10 78.7
50 TraesCS3B01G136300 chr5B 89.407 236 21 4 5151 5384 447009725 447009492 2.420000e-75 294.0
51 TraesCS3B01G136300 chr5B 99.219 128 1 0 667 794 413609325 413609198 1.930000e-56 231.0
52 TraesCS3B01G136300 chr2B 87.645 259 24 5 3427 3679 785033483 785033227 2.420000e-75 294.0
53 TraesCS3B01G136300 chr2B 73.684 247 55 8 1464 1705 782184825 782184584 4.420000e-13 87.9
54 TraesCS3B01G136300 chr6B 87.649 251 29 1 3427 3675 130963021 130963271 3.140000e-74 291.0
55 TraesCS3B01G136300 chr6B 87.008 254 27 4 3427 3675 647171861 647172113 1.890000e-71 281.0
56 TraesCS3B01G136300 chr7D 88.017 242 27 2 5158 5398 64691313 64691073 1.460000e-72 285.0
57 TraesCS3B01G136300 chr7D 100.000 128 0 0 667 794 231585559 231585432 4.140000e-58 237.0
58 TraesCS3B01G136300 chr7D 93.443 61 4 0 793 853 579751338 579751278 3.410000e-14 91.6
59 TraesCS3B01G136300 chr4A 86.822 258 25 8 3427 3675 491873711 491873454 6.790000e-71 279.0
60 TraesCS3B01G136300 chr4A 95.082 61 3 0 793 853 464687354 464687294 7.340000e-16 97.1
61 TraesCS3B01G136300 chr5A 87.295 244 29 2 5157 5399 479460107 479459865 2.440000e-70 278.0
62 TraesCS3B01G136300 chr4B 100.000 128 0 0 667 794 158 31 4.140000e-58 237.0
63 TraesCS3B01G136300 chr4B 94.828 58 3 0 796 853 16799219 16799162 3.410000e-14 91.6
64 TraesCS3B01G136300 chr4B 94.444 36 1 1 1675 1710 647647121 647647155 4.000000e-03 54.7
65 TraesCS3B01G136300 chr1A 98.438 128 2 0 667 794 371923022 371922895 8.970000e-55 226.0
66 TraesCS3B01G136300 chr4D 77.725 211 42 5 1498 1705 76023316 76023524 3.370000e-24 124.0
67 TraesCS3B01G136300 chr1B 75.304 247 46 14 1464 1703 94236442 94236204 4.390000e-18 104.0
68 TraesCS3B01G136300 chr1B 95.082 61 3 0 793 853 322104557 322104617 7.340000e-16 97.1
69 TraesCS3B01G136300 chr7A 94.915 59 3 0 795 853 580665286 580665344 9.490000e-15 93.5
70 TraesCS3B01G136300 chr7A 91.667 48 3 1 1645 1692 384088150 384088104 2.070000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G136300 chr3B 119082380 119091260 8880 False 16401.000000 16401 100.000000 1 8881 1 chr3B.!!$F1 8880
1 TraesCS3B01G136300 chr3B 136484850 136490132 5282 True 9367.000000 9367 98.694000 1218 6493 1 chr3B.!!$R1 5275
2 TraesCS3B01G136300 chr3B 68398722 68403990 5268 True 645.500000 965 80.409000 2004 7922 2 chr3B.!!$R2 5918
3 TraesCS3B01G136300 chr3D 73758110 73766240 8130 False 2257.200000 5264 91.887400 20 8878 5 chr3D.!!$F3 8858
4 TraesCS3B01G136300 chr3D 43781238 43786619 5381 False 655.500000 976 81.433500 1922 7909 2 chr3D.!!$F2 5987
5 TraesCS3B01G136300 chr3A 86623092 86631421 8329 False 1842.833333 4458 92.597333 5 8878 6 chr3A.!!$F5 8873
6 TraesCS3B01G136300 chr3A 55558172 55563414 5242 True 643.000000 955 81.558000 2076 7919 2 chr3A.!!$R1 5843
7 TraesCS3B01G136300 chrUn 471930996 471931561 565 False 462.000000 462 81.565000 2678 3247 1 chrUn.!!$F2 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 824 0.038526 AGTGCTGTAGCTAACGCGTT 60.039 50.0 29.27 29.27 42.32 4.84 F
1174 1455 0.385849 ATGTTTGCATGCACACGTCG 60.386 50.0 26.93 0.00 33.37 5.12 F
1188 1469 1.331214 ACGTCGGGTGAAAGGAAGTA 58.669 50.0 0.00 0.00 0.00 2.24 F
2067 2358 1.299541 AACCAAGAGTTGCACACGAG 58.700 50.0 0.00 0.00 37.29 4.18 F
3436 3759 2.576191 CCTTCACCAATTACTCCCTCCA 59.424 50.0 0.00 0.00 0.00 3.86 F
4992 5472 0.107897 TGGTAGCATACAGGTTGCGG 60.108 55.0 0.00 0.00 45.43 5.69 F
7259 8069 0.698238 AACTGGACTAAGCATGCCCA 59.302 50.0 15.66 13.19 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 2095 3.980134 CACAAAAACGTTGCATAGCATCA 59.020 39.130 0.00 0.0 38.76 3.07 R
2039 2330 7.023575 GTGTGCAACTCTTGGTTTTATGATAG 58.976 38.462 0.00 0.0 38.04 2.08 R
4313 4747 2.787473 TCCCACCTGCATTTCACTAG 57.213 50.000 0.00 0.0 0.00 2.57 R
4992 5472 1.035139 CCAATGCATAGGGCTGGAAC 58.965 55.000 8.43 0.0 45.15 3.62 R
6285 6813 0.264359 AGCCCTATGAGCTCCTCTGT 59.736 55.000 12.15 0.0 34.91 3.41 R
7297 8107 0.268869 TCATGGCCCCCACTCTCTAT 59.731 55.000 0.00 0.0 35.80 1.98 R
8125 9018 1.629043 GGTAGGACCACACACAGAGA 58.371 55.000 0.00 0.0 38.42 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 9.187996 ACCAAGTTCCAATGAATCAAAATTTTT 57.812 25.926 0.00 0.00 31.98 1.94
229 233 5.445964 AGGAGAGAGAAGAATCTAGACCAC 58.554 45.833 0.00 0.00 35.54 4.16
241 245 0.107508 TAGACCACGTACTCCTCCCG 60.108 60.000 0.00 0.00 0.00 5.14
242 246 1.377725 GACCACGTACTCCTCCCGA 60.378 63.158 0.00 0.00 0.00 5.14
263 270 1.919956 GCATGTGTGAGGCTGTGAGC 61.920 60.000 0.00 0.00 41.46 4.26
284 291 0.476338 TGTTGTAGCAGGCCCAGAAA 59.524 50.000 0.00 0.00 0.00 2.52
298 305 6.431234 CAGGCCCAGAAACTAATCCATTATAC 59.569 42.308 0.00 0.00 0.00 1.47
300 307 6.655425 GGCCCAGAAACTAATCCATTATACTC 59.345 42.308 0.00 0.00 0.00 2.59
326 567 0.390860 CTCTTTGCTCCGGATCCGAT 59.609 55.000 35.42 0.00 42.83 4.18
354 612 7.662258 TGATTTATAAACGTTGAACCCTGAGAA 59.338 33.333 0.00 0.00 0.00 2.87
373 632 7.392494 TGAGAATTGATACGTACAAGACTCT 57.608 36.000 24.59 19.58 36.01 3.24
376 635 9.953697 GAGAATTGATACGTACAAGACTCTATT 57.046 33.333 21.57 14.38 34.30 1.73
387 646 9.500864 CGTACAAGACTCTATTTTACTACTTCC 57.499 37.037 0.00 0.00 0.00 3.46
390 649 8.751242 ACAAGACTCTATTTTACTACTTCCTCC 58.249 37.037 0.00 0.00 0.00 4.30
391 650 7.571080 AGACTCTATTTTACTACTTCCTCCG 57.429 40.000 0.00 0.00 0.00 4.63
392 651 7.118060 AGACTCTATTTTACTACTTCCTCCGT 58.882 38.462 0.00 0.00 0.00 4.69
393 652 8.270744 AGACTCTATTTTACTACTTCCTCCGTA 58.729 37.037 0.00 0.00 0.00 4.02
394 653 8.993404 ACTCTATTTTACTACTTCCTCCGTAT 57.007 34.615 0.00 0.00 0.00 3.06
395 654 9.418839 ACTCTATTTTACTACTTCCTCCGTATT 57.581 33.333 0.00 0.00 0.00 1.89
396 655 9.680315 CTCTATTTTACTACTTCCTCCGTATTG 57.320 37.037 0.00 0.00 0.00 1.90
397 656 9.412460 TCTATTTTACTACTTCCTCCGTATTGA 57.588 33.333 0.00 0.00 0.00 2.57
398 657 9.680315 CTATTTTACTACTTCCTCCGTATTGAG 57.320 37.037 0.00 0.00 0.00 3.02
399 658 7.707624 TTTTACTACTTCCTCCGTATTGAGA 57.292 36.000 0.00 0.00 34.11 3.27
400 659 7.893124 TTTACTACTTCCTCCGTATTGAGAT 57.107 36.000 0.00 0.00 34.11 2.75
401 660 7.507733 TTACTACTTCCTCCGTATTGAGATC 57.492 40.000 0.00 0.00 34.11 2.75
402 661 3.992260 ACTTCCTCCGTATTGAGATCG 57.008 47.619 0.00 0.00 34.11 3.69
403 662 2.623889 ACTTCCTCCGTATTGAGATCGG 59.376 50.000 0.00 0.00 44.76 4.18
411 670 4.430007 CCGTATTGAGATCGGAAAGAACA 58.570 43.478 0.00 0.00 46.05 3.18
412 671 4.267928 CCGTATTGAGATCGGAAAGAACAC 59.732 45.833 0.00 0.00 46.05 3.32
413 672 4.267928 CGTATTGAGATCGGAAAGAACACC 59.732 45.833 0.00 0.00 0.00 4.16
414 673 3.762407 TTGAGATCGGAAAGAACACCA 57.238 42.857 0.00 0.00 0.00 4.17
415 674 3.762407 TGAGATCGGAAAGAACACCAA 57.238 42.857 0.00 0.00 0.00 3.67
416 675 3.399330 TGAGATCGGAAAGAACACCAAC 58.601 45.455 0.00 0.00 0.00 3.77
417 676 2.412089 GAGATCGGAAAGAACACCAACG 59.588 50.000 0.00 0.00 0.00 4.10
418 677 1.463444 GATCGGAAAGAACACCAACGG 59.537 52.381 0.00 0.00 0.00 4.44
419 678 1.161563 TCGGAAAGAACACCAACGGC 61.162 55.000 0.00 0.00 0.00 5.68
420 679 1.281656 GGAAAGAACACCAACGGCG 59.718 57.895 4.80 4.80 0.00 6.46
421 680 1.161563 GGAAAGAACACCAACGGCGA 61.162 55.000 16.62 0.00 0.00 5.54
422 681 0.658897 GAAAGAACACCAACGGCGAA 59.341 50.000 16.62 0.00 0.00 4.70
423 682 1.064357 GAAAGAACACCAACGGCGAAA 59.936 47.619 16.62 0.00 0.00 3.46
424 683 0.661020 AAGAACACCAACGGCGAAAG 59.339 50.000 16.62 3.23 0.00 2.62
437 696 2.755929 CGAAAGCACTCTACTGGGC 58.244 57.895 0.00 0.00 0.00 5.36
438 697 0.741221 CGAAAGCACTCTACTGGGCC 60.741 60.000 0.00 0.00 0.00 5.80
439 698 0.741221 GAAAGCACTCTACTGGGCCG 60.741 60.000 0.00 0.00 0.00 6.13
440 699 1.192146 AAAGCACTCTACTGGGCCGA 61.192 55.000 0.00 0.00 0.00 5.54
441 700 1.889530 AAGCACTCTACTGGGCCGAC 61.890 60.000 0.00 0.00 0.00 4.79
442 701 2.646175 GCACTCTACTGGGCCGACA 61.646 63.158 0.00 0.00 0.00 4.35
443 702 1.215647 CACTCTACTGGGCCGACAC 59.784 63.158 0.00 0.00 0.00 3.67
444 703 1.076906 ACTCTACTGGGCCGACACT 59.923 57.895 0.00 0.00 0.00 3.55
445 704 1.251527 ACTCTACTGGGCCGACACTG 61.252 60.000 0.00 0.00 0.00 3.66
446 705 0.965866 CTCTACTGGGCCGACACTGA 60.966 60.000 0.00 0.00 0.00 3.41
447 706 1.215647 CTACTGGGCCGACACTGAC 59.784 63.158 0.00 0.00 0.00 3.51
448 707 1.532078 TACTGGGCCGACACTGACA 60.532 57.895 0.00 0.00 0.00 3.58
449 708 1.812686 TACTGGGCCGACACTGACAC 61.813 60.000 0.00 0.00 0.00 3.67
450 709 2.842462 TGGGCCGACACTGACACT 60.842 61.111 0.00 0.00 0.00 3.55
451 710 2.357517 GGGCCGACACTGACACTG 60.358 66.667 0.00 0.00 0.00 3.66
452 711 2.734591 GGCCGACACTGACACTGA 59.265 61.111 0.00 0.00 0.00 3.41
453 712 1.373497 GGCCGACACTGACACTGAG 60.373 63.158 0.00 0.00 0.00 3.35
454 713 1.660355 GCCGACACTGACACTGAGA 59.340 57.895 0.00 0.00 0.00 3.27
455 714 0.387878 GCCGACACTGACACTGAGAG 60.388 60.000 0.00 0.00 0.00 3.20
456 715 1.239347 CCGACACTGACACTGAGAGA 58.761 55.000 0.00 0.00 0.00 3.10
457 716 1.068885 CCGACACTGACACTGAGAGAC 60.069 57.143 0.00 0.00 0.00 3.36
458 717 1.399087 CGACACTGACACTGAGAGACG 60.399 57.143 0.00 0.00 0.00 4.18
459 718 1.874231 GACACTGACACTGAGAGACGA 59.126 52.381 0.00 0.00 0.00 4.20
460 719 2.290916 GACACTGACACTGAGAGACGAA 59.709 50.000 0.00 0.00 0.00 3.85
461 720 2.688446 ACACTGACACTGAGAGACGAAA 59.312 45.455 0.00 0.00 0.00 3.46
462 721 3.243234 ACACTGACACTGAGAGACGAAAG 60.243 47.826 0.00 0.00 0.00 2.62
463 722 2.287909 ACTGACACTGAGAGACGAAAGC 60.288 50.000 0.00 0.00 0.00 3.51
464 723 1.957177 TGACACTGAGAGACGAAAGCT 59.043 47.619 0.00 0.00 0.00 3.74
465 724 3.146847 TGACACTGAGAGACGAAAGCTA 58.853 45.455 0.00 0.00 0.00 3.32
466 725 3.189495 TGACACTGAGAGACGAAAGCTAG 59.811 47.826 0.00 0.00 0.00 3.42
467 726 2.490115 ACACTGAGAGACGAAAGCTAGG 59.510 50.000 0.00 0.00 0.00 3.02
468 727 2.096248 ACTGAGAGACGAAAGCTAGGG 58.904 52.381 0.00 0.00 0.00 3.53
469 728 1.407258 CTGAGAGACGAAAGCTAGGGG 59.593 57.143 0.00 0.00 0.00 4.79
470 729 1.005569 TGAGAGACGAAAGCTAGGGGA 59.994 52.381 0.00 0.00 0.00 4.81
471 730 1.679153 GAGAGACGAAAGCTAGGGGAG 59.321 57.143 0.00 0.00 0.00 4.30
484 743 4.026356 CTAGGGGAGCAAATGGGATTAG 57.974 50.000 0.00 0.00 0.00 1.73
485 744 2.502745 AGGGGAGCAAATGGGATTAGA 58.497 47.619 0.00 0.00 0.00 2.10
486 745 2.444766 AGGGGAGCAAATGGGATTAGAG 59.555 50.000 0.00 0.00 0.00 2.43
487 746 2.443255 GGGGAGCAAATGGGATTAGAGA 59.557 50.000 0.00 0.00 0.00 3.10
488 747 3.481453 GGGAGCAAATGGGATTAGAGAC 58.519 50.000 0.00 0.00 0.00 3.36
489 748 3.481453 GGAGCAAATGGGATTAGAGACC 58.519 50.000 0.00 0.00 0.00 3.85
490 749 3.481453 GAGCAAATGGGATTAGAGACCC 58.519 50.000 0.00 0.00 45.74 4.46
491 750 2.175715 AGCAAATGGGATTAGAGACCCC 59.824 50.000 0.00 0.00 45.01 4.95
496 755 3.330126 TGGGATTAGAGACCCCAGTAG 57.670 52.381 0.00 0.00 44.67 2.57
497 756 2.590611 TGGGATTAGAGACCCCAGTAGT 59.409 50.000 0.00 0.00 44.67 2.73
498 757 3.232662 GGGATTAGAGACCCCAGTAGTC 58.767 54.545 0.00 0.00 40.19 2.59
499 758 3.232662 GGATTAGAGACCCCAGTAGTCC 58.767 54.545 0.00 0.00 34.67 3.85
500 759 3.117054 GGATTAGAGACCCCAGTAGTCCT 60.117 52.174 0.00 0.00 34.67 3.85
501 760 4.106019 GGATTAGAGACCCCAGTAGTCCTA 59.894 50.000 0.00 0.00 34.67 2.94
502 761 4.792513 TTAGAGACCCCAGTAGTCCTAG 57.207 50.000 0.00 0.00 34.67 3.02
503 762 1.215924 AGAGACCCCAGTAGTCCTAGC 59.784 57.143 0.00 0.00 34.67 3.42
504 763 0.262285 AGACCCCAGTAGTCCTAGCC 59.738 60.000 0.00 0.00 34.67 3.93
505 764 1.076192 ACCCCAGTAGTCCTAGCCG 60.076 63.158 0.00 0.00 0.00 5.52
506 765 1.076192 CCCCAGTAGTCCTAGCCGT 60.076 63.158 0.00 0.00 0.00 5.68
507 766 0.184451 CCCCAGTAGTCCTAGCCGTA 59.816 60.000 0.00 0.00 0.00 4.02
508 767 1.410648 CCCCAGTAGTCCTAGCCGTAA 60.411 57.143 0.00 0.00 0.00 3.18
509 768 2.381911 CCCAGTAGTCCTAGCCGTAAA 58.618 52.381 0.00 0.00 0.00 2.01
510 769 2.100418 CCCAGTAGTCCTAGCCGTAAAC 59.900 54.545 0.00 0.00 0.00 2.01
511 770 2.223433 CCAGTAGTCCTAGCCGTAAACG 60.223 54.545 0.00 0.00 39.44 3.60
512 771 2.679837 CAGTAGTCCTAGCCGTAAACGA 59.320 50.000 3.65 0.00 43.02 3.85
513 772 3.314635 CAGTAGTCCTAGCCGTAAACGAT 59.685 47.826 3.65 0.00 43.02 3.73
514 773 2.865343 AGTCCTAGCCGTAAACGATG 57.135 50.000 3.65 0.00 43.02 3.84
515 774 1.407979 AGTCCTAGCCGTAAACGATGG 59.592 52.381 3.65 1.05 43.02 3.51
516 775 1.406539 GTCCTAGCCGTAAACGATGGA 59.593 52.381 3.65 3.33 43.02 3.41
517 776 2.035576 GTCCTAGCCGTAAACGATGGAT 59.964 50.000 3.65 0.00 43.02 3.41
518 777 3.254166 GTCCTAGCCGTAAACGATGGATA 59.746 47.826 3.65 0.00 43.02 2.59
519 778 3.254166 TCCTAGCCGTAAACGATGGATAC 59.746 47.826 3.65 0.00 43.02 2.24
520 779 3.255149 CCTAGCCGTAAACGATGGATACT 59.745 47.826 3.65 0.00 43.02 2.12
521 780 4.456911 CCTAGCCGTAAACGATGGATACTA 59.543 45.833 3.65 0.00 43.02 1.82
522 781 4.500603 AGCCGTAAACGATGGATACTAG 57.499 45.455 3.65 0.00 43.02 2.57
523 782 3.255149 AGCCGTAAACGATGGATACTAGG 59.745 47.826 3.65 0.00 43.02 3.02
524 783 3.005155 GCCGTAAACGATGGATACTAGGT 59.995 47.826 3.65 0.00 43.02 3.08
525 784 4.543692 CCGTAAACGATGGATACTAGGTG 58.456 47.826 3.65 0.00 43.02 4.00
526 785 3.979495 CGTAAACGATGGATACTAGGTGC 59.021 47.826 0.00 0.00 43.02 5.01
527 786 4.261489 CGTAAACGATGGATACTAGGTGCT 60.261 45.833 0.00 0.00 43.02 4.40
528 787 3.735237 AACGATGGATACTAGGTGCTG 57.265 47.619 0.00 0.00 37.61 4.41
529 788 2.667470 ACGATGGATACTAGGTGCTGT 58.333 47.619 0.00 0.00 37.61 4.40
530 789 2.362397 ACGATGGATACTAGGTGCTGTG 59.638 50.000 0.00 0.00 37.61 3.66
531 790 2.760374 GATGGATACTAGGTGCTGTGC 58.240 52.381 0.00 0.00 37.61 4.57
532 791 0.459899 TGGATACTAGGTGCTGTGCG 59.540 55.000 0.00 0.00 37.61 5.34
533 792 0.744874 GGATACTAGGTGCTGTGCGA 59.255 55.000 0.00 0.00 0.00 5.10
534 793 1.536284 GGATACTAGGTGCTGTGCGAC 60.536 57.143 0.00 0.00 0.00 5.19
535 794 1.405821 GATACTAGGTGCTGTGCGACT 59.594 52.381 0.00 0.00 0.00 4.18
536 795 0.809385 TACTAGGTGCTGTGCGACTC 59.191 55.000 0.00 0.00 0.00 3.36
537 796 1.515088 CTAGGTGCTGTGCGACTCG 60.515 63.158 0.00 0.00 0.00 4.18
538 797 1.923227 CTAGGTGCTGTGCGACTCGA 61.923 60.000 1.63 0.00 0.00 4.04
539 798 2.196382 TAGGTGCTGTGCGACTCGAC 62.196 60.000 1.63 0.00 0.00 4.20
540 799 3.106407 GTGCTGTGCGACTCGACC 61.106 66.667 1.63 0.00 0.00 4.79
541 800 4.357947 TGCTGTGCGACTCGACCC 62.358 66.667 1.63 0.00 0.00 4.46
543 802 4.039357 CTGTGCGACTCGACCCGT 62.039 66.667 1.63 0.00 0.00 5.28
544 803 4.337060 TGTGCGACTCGACCCGTG 62.337 66.667 1.63 0.00 0.00 4.94
548 807 4.039357 CGACTCGACCCGTGCAGT 62.039 66.667 0.00 0.00 0.00 4.40
549 808 2.430921 GACTCGACCCGTGCAGTG 60.431 66.667 0.00 0.00 0.00 3.66
550 809 4.664677 ACTCGACCCGTGCAGTGC 62.665 66.667 8.58 8.58 0.00 4.40
551 810 4.363990 CTCGACCCGTGCAGTGCT 62.364 66.667 17.60 0.00 0.00 4.40
552 811 4.662961 TCGACCCGTGCAGTGCTG 62.663 66.667 17.60 8.80 0.00 4.41
553 812 4.969196 CGACCCGTGCAGTGCTGT 62.969 66.667 17.60 8.20 0.00 4.40
554 813 2.342279 GACCCGTGCAGTGCTGTA 59.658 61.111 17.60 0.00 0.00 2.74
555 814 1.738099 GACCCGTGCAGTGCTGTAG 60.738 63.158 17.60 5.49 0.00 2.74
556 815 3.121030 CCCGTGCAGTGCTGTAGC 61.121 66.667 17.60 0.00 42.50 3.58
557 816 2.047844 CCGTGCAGTGCTGTAGCT 60.048 61.111 17.60 0.00 42.66 3.32
558 817 1.215382 CCGTGCAGTGCTGTAGCTA 59.785 57.895 17.60 0.00 42.66 3.32
559 818 0.389817 CCGTGCAGTGCTGTAGCTAA 60.390 55.000 17.60 0.00 42.66 3.09
560 819 0.716108 CGTGCAGTGCTGTAGCTAAC 59.284 55.000 17.60 2.13 42.66 2.34
561 820 0.716108 GTGCAGTGCTGTAGCTAACG 59.284 55.000 17.60 0.00 42.66 3.18
562 821 1.014044 TGCAGTGCTGTAGCTAACGC 61.014 55.000 17.60 1.39 42.66 4.84
563 822 1.991430 CAGTGCTGTAGCTAACGCG 59.009 57.895 3.53 3.53 42.32 6.01
564 823 0.732880 CAGTGCTGTAGCTAACGCGT 60.733 55.000 5.58 5.58 42.32 6.01
565 824 0.038526 AGTGCTGTAGCTAACGCGTT 60.039 50.000 29.27 29.27 42.32 4.84
566 825 1.200716 AGTGCTGTAGCTAACGCGTTA 59.799 47.619 28.34 28.34 42.32 3.18
567 826 1.987770 GTGCTGTAGCTAACGCGTTAA 59.012 47.619 29.58 14.79 42.32 2.01
568 827 2.027688 GTGCTGTAGCTAACGCGTTAAG 59.972 50.000 29.58 23.68 42.32 1.85
569 828 2.257034 GCTGTAGCTAACGCGTTAAGT 58.743 47.619 29.58 21.68 42.32 2.24
570 829 3.119884 TGCTGTAGCTAACGCGTTAAGTA 60.120 43.478 29.58 20.43 42.32 2.24
571 830 4.040376 GCTGTAGCTAACGCGTTAAGTAT 58.960 43.478 29.58 18.24 42.32 2.12
572 831 4.146100 GCTGTAGCTAACGCGTTAAGTATC 59.854 45.833 29.58 19.02 42.32 2.24
573 832 4.601019 TGTAGCTAACGCGTTAAGTATCC 58.399 43.478 29.58 16.54 42.32 2.59
574 833 3.089573 AGCTAACGCGTTAAGTATCCC 57.910 47.619 29.58 13.21 42.32 3.85
575 834 1.783140 GCTAACGCGTTAAGTATCCCG 59.217 52.381 29.58 17.42 0.00 5.14
576 835 1.783140 CTAACGCGTTAAGTATCCCGC 59.217 52.381 29.58 0.00 42.53 6.13
577 836 0.807275 AACGCGTTAAGTATCCCGCC 60.807 55.000 25.38 0.00 42.99 6.13
578 837 1.066918 CGCGTTAAGTATCCCGCCT 59.933 57.895 0.00 0.00 42.99 5.52
579 838 1.213094 CGCGTTAAGTATCCCGCCTG 61.213 60.000 0.00 0.00 42.99 4.85
580 839 0.878961 GCGTTAAGTATCCCGCCTGG 60.879 60.000 0.00 0.00 40.25 4.45
609 868 4.488126 CGCAAGAATGAAACTCAAAGGA 57.512 40.909 0.00 0.00 43.02 3.36
610 869 4.858935 CGCAAGAATGAAACTCAAAGGAA 58.141 39.130 0.00 0.00 43.02 3.36
611 870 5.464168 CGCAAGAATGAAACTCAAAGGAAT 58.536 37.500 0.00 0.00 43.02 3.01
612 871 5.922544 CGCAAGAATGAAACTCAAAGGAATT 59.077 36.000 0.00 0.00 43.02 2.17
613 872 6.129009 CGCAAGAATGAAACTCAAAGGAATTG 60.129 38.462 0.00 0.00 39.32 2.32
614 873 6.925165 GCAAGAATGAAACTCAAAGGAATTGA 59.075 34.615 0.00 0.00 45.71 2.57
615 874 7.095899 GCAAGAATGAAACTCAAAGGAATTGAC 60.096 37.037 0.00 0.00 43.08 3.18
616 875 6.672147 AGAATGAAACTCAAAGGAATTGACG 58.328 36.000 0.00 0.00 43.08 4.35
617 876 4.829064 TGAAACTCAAAGGAATTGACGG 57.171 40.909 0.00 0.00 43.08 4.79
618 877 3.568007 TGAAACTCAAAGGAATTGACGGG 59.432 43.478 0.00 0.00 43.08 5.28
619 878 2.200373 ACTCAAAGGAATTGACGGGG 57.800 50.000 0.00 0.00 43.08 5.73
620 879 1.271926 ACTCAAAGGAATTGACGGGGG 60.272 52.381 0.00 0.00 43.08 5.40
621 880 0.610785 TCAAAGGAATTGACGGGGGC 60.611 55.000 0.00 0.00 43.08 5.80
622 881 1.304962 AAAGGAATTGACGGGGGCC 60.305 57.895 0.00 0.00 0.00 5.80
623 882 2.798445 AAAGGAATTGACGGGGGCCC 62.798 60.000 15.76 15.76 0.00 5.80
642 901 2.872557 CACAAGCGGTGGAGCATG 59.127 61.111 0.00 0.00 44.04 4.06
643 902 2.431683 ACAAGCGGTGGAGCATGT 59.568 55.556 0.00 0.00 43.12 3.21
644 903 1.968017 ACAAGCGGTGGAGCATGTG 60.968 57.895 0.00 0.00 45.64 3.21
645 904 2.360350 AAGCGGTGGAGCATGTGG 60.360 61.111 0.00 0.00 40.15 4.17
646 905 3.196207 AAGCGGTGGAGCATGTGGT 62.196 57.895 0.00 0.00 40.15 4.16
647 906 2.672996 GCGGTGGAGCATGTGGTT 60.673 61.111 0.00 0.00 37.05 3.67
648 907 2.268076 GCGGTGGAGCATGTGGTTT 61.268 57.895 0.00 0.00 37.05 3.27
649 908 0.958382 GCGGTGGAGCATGTGGTTTA 60.958 55.000 0.00 0.00 37.05 2.01
650 909 1.529226 CGGTGGAGCATGTGGTTTAA 58.471 50.000 0.00 0.00 0.00 1.52
651 910 2.091541 CGGTGGAGCATGTGGTTTAAT 58.908 47.619 0.00 0.00 0.00 1.40
652 911 2.491693 CGGTGGAGCATGTGGTTTAATT 59.508 45.455 0.00 0.00 0.00 1.40
653 912 3.427503 CGGTGGAGCATGTGGTTTAATTC 60.428 47.826 0.00 0.00 0.00 2.17
654 913 3.427503 GGTGGAGCATGTGGTTTAATTCG 60.428 47.826 0.00 0.00 0.00 3.34
655 914 3.438781 GTGGAGCATGTGGTTTAATTCGA 59.561 43.478 0.00 0.00 0.00 3.71
656 915 4.096382 GTGGAGCATGTGGTTTAATTCGAT 59.904 41.667 0.00 0.00 0.00 3.59
657 916 4.096231 TGGAGCATGTGGTTTAATTCGATG 59.904 41.667 0.00 0.00 0.00 3.84
658 917 4.032703 AGCATGTGGTTTAATTCGATGC 57.967 40.909 0.00 0.00 35.93 3.91
659 918 3.443329 AGCATGTGGTTTAATTCGATGCA 59.557 39.130 0.00 0.00 37.72 3.96
660 919 4.082300 AGCATGTGGTTTAATTCGATGCAA 60.082 37.500 0.00 0.00 37.72 4.08
661 920 4.624882 GCATGTGGTTTAATTCGATGCAAA 59.375 37.500 0.00 0.00 35.79 3.68
662 921 5.220265 GCATGTGGTTTAATTCGATGCAAAG 60.220 40.000 0.00 0.00 35.79 2.77
663 922 4.233789 TGTGGTTTAATTCGATGCAAAGC 58.766 39.130 0.00 7.83 0.00 3.51
664 923 3.300590 GTGGTTTAATTCGATGCAAAGCG 59.699 43.478 0.00 0.00 32.49 4.68
665 924 3.189495 TGGTTTAATTCGATGCAAAGCGA 59.811 39.130 5.71 5.71 32.49 4.93
672 931 3.281341 TCGATGCAAAGCGAAAAATGT 57.719 38.095 7.14 0.00 33.04 2.71
673 932 3.637432 TCGATGCAAAGCGAAAAATGTT 58.363 36.364 7.14 0.00 33.04 2.71
674 933 4.788690 TCGATGCAAAGCGAAAAATGTTA 58.211 34.783 7.14 0.00 33.04 2.41
675 934 4.615121 TCGATGCAAAGCGAAAAATGTTAC 59.385 37.500 7.14 0.00 33.04 2.50
676 935 4.487004 CGATGCAAAGCGAAAAATGTTACG 60.487 41.667 0.00 0.00 0.00 3.18
677 936 3.953766 TGCAAAGCGAAAAATGTTACGA 58.046 36.364 0.00 0.00 0.00 3.43
678 937 3.971871 TGCAAAGCGAAAAATGTTACGAG 59.028 39.130 0.00 0.00 0.00 4.18
679 938 4.215965 GCAAAGCGAAAAATGTTACGAGA 58.784 39.130 0.00 0.00 0.00 4.04
680 939 4.851558 GCAAAGCGAAAAATGTTACGAGAT 59.148 37.500 0.00 0.00 0.00 2.75
681 940 5.342259 GCAAAGCGAAAAATGTTACGAGATT 59.658 36.000 0.00 0.00 0.00 2.40
682 941 6.129194 GCAAAGCGAAAAATGTTACGAGATTT 60.129 34.615 0.00 0.00 30.72 2.17
683 942 7.060174 GCAAAGCGAAAAATGTTACGAGATTTA 59.940 33.333 0.00 0.00 29.48 1.40
684 943 8.567221 CAAAGCGAAAAATGTTACGAGATTTAG 58.433 33.333 0.00 0.00 29.48 1.85
685 944 7.591006 AGCGAAAAATGTTACGAGATTTAGA 57.409 32.000 0.00 0.00 29.48 2.10
686 945 8.197988 AGCGAAAAATGTTACGAGATTTAGAT 57.802 30.769 0.00 0.00 29.48 1.98
687 946 8.665685 AGCGAAAAATGTTACGAGATTTAGATT 58.334 29.630 0.00 0.00 29.48 2.40
688 947 9.910511 GCGAAAAATGTTACGAGATTTAGATTA 57.089 29.630 0.00 0.00 29.48 1.75
729 988 9.810545 AAGTTCAAGACATATTAGAGCTCTAAC 57.189 33.333 33.09 21.57 40.81 2.34
730 989 8.417884 AGTTCAAGACATATTAGAGCTCTAACC 58.582 37.037 33.09 20.35 40.81 2.85
731 990 7.898014 TCAAGACATATTAGAGCTCTAACCA 57.102 36.000 33.09 24.68 40.81 3.67
732 991 8.484214 TCAAGACATATTAGAGCTCTAACCAT 57.516 34.615 33.09 25.58 40.81 3.55
733 992 8.363390 TCAAGACATATTAGAGCTCTAACCATG 58.637 37.037 33.44 33.44 40.81 3.66
734 993 7.847711 AGACATATTAGAGCTCTAACCATGT 57.152 36.000 36.92 36.92 43.14 3.21
735 994 8.256356 AGACATATTAGAGCTCTAACCATGTT 57.744 34.615 36.74 29.24 41.96 2.71
736 995 8.709308 AGACATATTAGAGCTCTAACCATGTTT 58.291 33.333 36.74 32.83 41.96 2.83
737 996 8.894768 ACATATTAGAGCTCTAACCATGTTTC 57.105 34.615 34.26 6.28 40.64 2.78
738 997 7.653713 ACATATTAGAGCTCTAACCATGTTTCG 59.346 37.037 34.26 22.64 40.64 3.46
739 998 3.252974 AGAGCTCTAACCATGTTTCGG 57.747 47.619 16.50 0.00 0.00 4.30
740 999 1.666189 GAGCTCTAACCATGTTTCGGC 59.334 52.381 6.43 0.00 0.00 5.54
741 1000 1.279271 AGCTCTAACCATGTTTCGGCT 59.721 47.619 0.00 0.00 0.00 5.52
742 1001 2.084546 GCTCTAACCATGTTTCGGCTT 58.915 47.619 0.00 0.00 0.00 4.35
743 1002 2.159517 GCTCTAACCATGTTTCGGCTTG 60.160 50.000 0.00 0.00 0.00 4.01
744 1003 3.074412 CTCTAACCATGTTTCGGCTTGT 58.926 45.455 0.00 0.00 0.00 3.16
745 1004 2.811431 TCTAACCATGTTTCGGCTTGTG 59.189 45.455 0.00 0.00 0.00 3.33
746 1005 1.686355 AACCATGTTTCGGCTTGTGA 58.314 45.000 0.00 0.00 0.00 3.58
747 1006 1.909700 ACCATGTTTCGGCTTGTGAT 58.090 45.000 0.00 0.00 0.00 3.06
748 1007 1.812571 ACCATGTTTCGGCTTGTGATC 59.187 47.619 0.00 0.00 0.00 2.92
749 1008 1.811965 CCATGTTTCGGCTTGTGATCA 59.188 47.619 0.00 0.00 0.00 2.92
750 1009 2.228582 CCATGTTTCGGCTTGTGATCAA 59.771 45.455 0.00 0.00 0.00 2.57
751 1010 3.119388 CCATGTTTCGGCTTGTGATCAAT 60.119 43.478 0.00 0.00 32.82 2.57
752 1011 3.829886 TGTTTCGGCTTGTGATCAATC 57.170 42.857 0.00 0.00 32.82 2.67
753 1012 2.487762 TGTTTCGGCTTGTGATCAATCC 59.512 45.455 0.00 0.00 36.74 3.01
754 1013 2.487762 GTTTCGGCTTGTGATCAATCCA 59.512 45.455 0.00 0.00 39.11 3.41
755 1014 2.715749 TCGGCTTGTGATCAATCCAT 57.284 45.000 0.00 0.00 39.11 3.41
756 1015 3.836365 TCGGCTTGTGATCAATCCATA 57.164 42.857 0.00 0.00 39.11 2.74
757 1016 3.732212 TCGGCTTGTGATCAATCCATAG 58.268 45.455 0.00 0.00 39.11 2.23
758 1017 3.387699 TCGGCTTGTGATCAATCCATAGA 59.612 43.478 0.00 0.00 39.11 1.98
759 1018 4.040829 TCGGCTTGTGATCAATCCATAGAT 59.959 41.667 0.00 0.00 39.11 1.98
760 1019 5.245977 TCGGCTTGTGATCAATCCATAGATA 59.754 40.000 0.00 0.00 39.11 1.98
761 1020 5.349817 CGGCTTGTGATCAATCCATAGATAC 59.650 44.000 0.00 0.00 39.11 2.24
762 1021 5.645497 GGCTTGTGATCAATCCATAGATACC 59.355 44.000 0.00 0.00 39.02 2.73
763 1022 6.233434 GCTTGTGATCAATCCATAGATACCA 58.767 40.000 0.00 0.00 32.82 3.25
764 1023 6.712095 GCTTGTGATCAATCCATAGATACCAA 59.288 38.462 0.00 0.00 32.82 3.67
765 1024 7.392673 GCTTGTGATCAATCCATAGATACCAAT 59.607 37.037 0.00 0.00 32.82 3.16
766 1025 8.853077 TTGTGATCAATCCATAGATACCAATC 57.147 34.615 0.00 0.00 30.42 2.67
767 1026 7.099120 TGTGATCAATCCATAGATACCAATCG 58.901 38.462 0.00 0.00 37.19 3.34
768 1027 7.039082 TGTGATCAATCCATAGATACCAATCGA 60.039 37.037 0.00 0.00 37.19 3.59
769 1028 7.819415 GTGATCAATCCATAGATACCAATCGAA 59.181 37.037 0.00 0.00 37.19 3.71
770 1029 8.374743 TGATCAATCCATAGATACCAATCGAAA 58.625 33.333 0.00 0.00 37.19 3.46
771 1030 9.219603 GATCAATCCATAGATACCAATCGAAAA 57.780 33.333 0.00 0.00 37.19 2.29
772 1031 9.745018 ATCAATCCATAGATACCAATCGAAAAT 57.255 29.630 0.00 0.00 37.19 1.82
785 1044 8.786826 ACCAATCGAAAATAAATAGACACTCA 57.213 30.769 0.00 0.00 0.00 3.41
786 1045 9.226606 ACCAATCGAAAATAAATAGACACTCAA 57.773 29.630 0.00 0.00 0.00 3.02
812 1071 8.575649 AAAAAGTCCCATGATATAAGACGTTT 57.424 30.769 0.00 0.00 39.63 3.60
813 1072 8.575649 AAAAGTCCCATGATATAAGACGTTTT 57.424 30.769 0.00 0.00 36.28 2.43
814 1073 8.575649 AAAGTCCCATGATATAAGACGTTTTT 57.424 30.769 0.00 0.00 32.70 1.94
984 1260 5.163814 CCTCTCATTTTGTTCTCCGAATCAC 60.164 44.000 0.00 0.00 0.00 3.06
1142 1423 9.469807 ACTGTACATACTCGTAGTACTACATAC 57.530 37.037 28.03 17.83 39.02 2.39
1143 1424 8.818141 TGTACATACTCGTAGTACTACATACC 57.182 38.462 28.03 5.73 39.02 2.73
1144 1425 8.642432 TGTACATACTCGTAGTACTACATACCT 58.358 37.037 28.03 10.32 39.02 3.08
1145 1426 7.959689 ACATACTCGTAGTACTACATACCTG 57.040 40.000 28.03 20.80 32.84 4.00
1146 1427 7.730084 ACATACTCGTAGTACTACATACCTGA 58.270 38.462 28.03 16.62 32.84 3.86
1147 1428 7.871973 ACATACTCGTAGTACTACATACCTGAG 59.128 40.741 28.03 24.54 32.84 3.35
1148 1429 6.477053 ACTCGTAGTACTACATACCTGAGA 57.523 41.667 28.03 15.43 35.87 3.27
1149 1430 7.065120 ACTCGTAGTACTACATACCTGAGAT 57.935 40.000 28.03 14.30 35.87 2.75
1150 1431 8.187913 ACTCGTAGTACTACATACCTGAGATA 57.812 38.462 28.03 0.00 35.87 1.98
1151 1432 8.646004 ACTCGTAGTACTACATACCTGAGATAA 58.354 37.037 28.03 0.00 35.87 1.75
1152 1433 9.656040 CTCGTAGTACTACATACCTGAGATAAT 57.344 37.037 28.03 0.00 35.87 1.28
1153 1434 9.433153 TCGTAGTACTACATACCTGAGATAATG 57.567 37.037 28.03 9.66 35.87 1.90
1154 1435 8.176365 CGTAGTACTACATACCTGAGATAATGC 58.824 40.741 28.03 0.07 35.87 3.56
1155 1436 9.011095 GTAGTACTACATACCTGAGATAATGCA 57.989 37.037 25.02 0.00 36.15 3.96
1156 1437 8.657387 AGTACTACATACCTGAGATAATGCAT 57.343 34.615 0.00 0.00 33.85 3.96
1157 1438 8.526978 AGTACTACATACCTGAGATAATGCATG 58.473 37.037 0.00 0.00 33.85 4.06
1158 1439 7.308450 ACTACATACCTGAGATAATGCATGT 57.692 36.000 0.00 0.00 0.00 3.21
1159 1440 7.739825 ACTACATACCTGAGATAATGCATGTT 58.260 34.615 0.00 0.00 0.00 2.71
1160 1441 8.213679 ACTACATACCTGAGATAATGCATGTTT 58.786 33.333 0.00 0.00 0.00 2.83
1161 1442 7.268199 ACATACCTGAGATAATGCATGTTTG 57.732 36.000 0.00 0.00 0.00 2.93
1172 1453 3.182538 CATGTTTGCATGCACACGT 57.817 47.368 26.93 24.97 44.87 4.49
1173 1454 1.054574 CATGTTTGCATGCACACGTC 58.945 50.000 25.10 12.64 44.87 4.34
1174 1455 0.385849 ATGTTTGCATGCACACGTCG 60.386 50.000 26.93 0.00 33.37 5.12
1175 1456 1.725625 GTTTGCATGCACACGTCGG 60.726 57.895 22.58 0.00 0.00 4.79
1176 1457 2.902419 TTTGCATGCACACGTCGGG 61.902 57.895 22.58 0.00 0.00 5.14
1177 1458 4.617520 TGCATGCACACGTCGGGT 62.618 61.111 18.46 0.00 0.00 5.28
1187 1468 2.130512 ACGTCGGGTGAAAGGAAGT 58.869 52.632 0.00 0.00 0.00 3.01
1188 1469 1.331214 ACGTCGGGTGAAAGGAAGTA 58.669 50.000 0.00 0.00 0.00 2.24
1189 1470 1.688197 ACGTCGGGTGAAAGGAAGTAA 59.312 47.619 0.00 0.00 0.00 2.24
1190 1471 2.301009 ACGTCGGGTGAAAGGAAGTAAT 59.699 45.455 0.00 0.00 0.00 1.89
1191 1472 3.244318 ACGTCGGGTGAAAGGAAGTAATT 60.244 43.478 0.00 0.00 0.00 1.40
1697 1980 2.431782 CCTAATAAACCCGGACGAAGGA 59.568 50.000 0.73 0.00 0.00 3.36
2039 2330 5.582689 ATTTGTAAATCAGCCAAGTAGCC 57.417 39.130 0.00 0.00 0.00 3.93
2067 2358 1.299541 AACCAAGAGTTGCACACGAG 58.700 50.000 0.00 0.00 37.29 4.18
2914 3236 5.865085 TGTGTAGAGGAAGTGTATTTTGCT 58.135 37.500 0.00 0.00 0.00 3.91
3067 3389 7.793927 ACTTCTTTTCTGTGAGGAGTTAAAG 57.206 36.000 0.00 0.00 26.90 1.85
3137 3459 7.724305 AGTCTACAATGCGTTCTTTTTCTTA 57.276 32.000 0.00 0.00 0.00 2.10
3436 3759 2.576191 CCTTCACCAATTACTCCCTCCA 59.424 50.000 0.00 0.00 0.00 3.86
4373 4807 5.008415 GTGCTTCCAGAATACATGAAGGATG 59.992 44.000 0.00 1.28 37.48 3.51
4992 5472 0.107897 TGGTAGCATACAGGTTGCGG 60.108 55.000 0.00 0.00 45.43 5.69
5435 5920 4.340097 TCCACTGAACTCTTTGACTCGTAA 59.660 41.667 0.00 0.00 0.00 3.18
5665 6168 3.904800 TCAACAAGTGTGGTCTCTTCA 57.095 42.857 0.00 0.00 0.00 3.02
5926 6441 5.629079 AGGCCTTCAATTTAGAAAAGTCG 57.371 39.130 0.00 0.00 0.00 4.18
6285 6813 6.942005 TCTCAAGATTTGTTGGCTTAATCTCA 59.058 34.615 0.00 0.00 37.58 3.27
6531 7066 1.283613 TCCACTCCCCGCAAATGTAAT 59.716 47.619 0.00 0.00 0.00 1.89
6606 7370 9.264719 GATGGACAATGGATAATTTCAATTTCC 57.735 33.333 0.00 0.00 31.81 3.13
6848 7635 5.599732 GTTGGCATGGATAACATAAATGCA 58.400 37.500 8.07 0.00 44.26 3.96
6851 7638 5.009911 TGGCATGGATAACATAAATGCAGAC 59.990 40.000 8.07 0.00 44.26 3.51
6917 7704 4.394439 TGCTATATTTGTACGGCTCACA 57.606 40.909 0.00 0.00 0.00 3.58
6936 7723 2.287547 ACAAACGACATGGCATCAACAC 60.288 45.455 0.00 0.00 0.00 3.32
6990 7785 9.602568 ACTTCAAATGAATATTTTGCATGCATA 57.397 25.926 23.37 14.80 34.34 3.14
7051 7854 9.555727 TTGTCTGTGTTTAAAGAAGTAGCTATT 57.444 29.630 0.00 0.00 0.00 1.73
7114 7918 7.116075 AGGCACATATGTATCTTTTTGCATT 57.884 32.000 8.32 0.00 0.00 3.56
7146 7950 5.339990 GTGATAACCACATGTTGTTATGGC 58.660 41.667 29.87 20.26 45.03 4.40
7176 7980 9.926751 GCTAGAATATTTAAACTTTAACGGACC 57.073 33.333 0.00 0.00 0.00 4.46
7215 8024 7.285401 GGAAGCTATAACCATTTCCAATCTTGA 59.715 37.037 0.00 0.00 37.75 3.02
7226 8035 6.704289 TTTCCAATCTTGATTAGCTCATGG 57.296 37.500 0.00 0.00 33.37 3.66
7227 8036 5.378230 TCCAATCTTGATTAGCTCATGGT 57.622 39.130 0.00 0.00 33.68 3.55
7259 8069 0.698238 AACTGGACTAAGCATGCCCA 59.302 50.000 15.66 13.19 0.00 5.36
7277 8087 2.173356 CCCAACCTAGGCATGAGATGAA 59.827 50.000 9.30 0.00 0.00 2.57
7297 8107 4.343814 TGAAGAATACGATGGCATAGGTCA 59.656 41.667 12.31 0.00 0.00 4.02
7345 8155 9.405587 CATGTGTGTCATGTGTAATATATACGA 57.594 33.333 0.00 0.00 46.18 3.43
7367 8188 2.610479 CGGCTGCTATGTAGGTATGGTG 60.610 54.545 0.00 0.00 0.00 4.17
7370 8191 3.322254 GCTGCTATGTAGGTATGGTGACT 59.678 47.826 0.00 0.00 0.00 3.41
7380 8201 6.499350 TGTAGGTATGGTGACTAGTTTCCTTT 59.501 38.462 15.14 7.98 0.00 3.11
7443 8267 5.514500 AAGAAAGGTGAAACATAGCCCTA 57.486 39.130 0.00 0.00 39.98 3.53
7452 8276 6.599638 GGTGAAACATAGCCCTATCCATTATC 59.400 42.308 0.00 0.00 39.98 1.75
7775 8667 6.092748 GGTTGTGCCACAAATTATACTTGAG 58.907 40.000 12.63 0.00 40.15 3.02
7830 8722 7.420184 CATACCGATGCATACACTAATTCAA 57.580 36.000 0.00 0.00 0.00 2.69
7881 8773 7.180051 TGCTTTTTATTGACCCAATGGAATAGT 59.820 33.333 0.00 0.00 35.54 2.12
7899 8791 1.066215 AGTTGTACGAGGCATGCATCA 60.066 47.619 29.58 10.64 0.00 3.07
7922 8814 2.945668 CAGGGGATACAAAAGTAGCAGC 59.054 50.000 0.00 0.00 39.74 5.25
7980 8872 5.559770 TGTTAGAATGGTGATCAAGAGCAA 58.440 37.500 0.00 0.00 0.00 3.91
8065 8957 4.712476 GCTTCTGGGAATGTATGAGTGAT 58.288 43.478 0.00 0.00 0.00 3.06
8067 8959 5.698545 GCTTCTGGGAATGTATGAGTGATAC 59.301 44.000 0.00 0.00 37.96 2.24
8174 9067 5.277876 CCATTGTGCAAGCATAGAGATTCTC 60.278 44.000 5.49 5.49 0.00 2.87
8226 9119 5.095490 CGTCAAAACTTATCCAATCAAGGC 58.905 41.667 0.00 0.00 0.00 4.35
8227 9120 5.335583 CGTCAAAACTTATCCAATCAAGGCA 60.336 40.000 0.00 0.00 0.00 4.75
8261 9156 3.055530 TCAAAGCCAAAAAGGTTGCTTGA 60.056 39.130 0.00 0.00 42.85 3.02
8348 9244 6.680378 GCCAACATTGTGATAATACAAGTCCC 60.680 42.308 0.00 0.00 43.14 4.46
8367 9263 2.249413 CTGCATCTTGCTCCTCCCGT 62.249 60.000 0.75 0.00 45.31 5.28
8474 9370 7.665690 AGTAATAGGAATGTCATACTCAGCAG 58.334 38.462 0.00 0.00 0.00 4.24
8475 9371 6.491714 AATAGGAATGTCATACTCAGCAGT 57.508 37.500 0.00 0.00 36.55 4.40
8484 9380 4.985409 GTCATACTCAGCAGTAGTATTGGC 59.015 45.833 3.63 0.00 38.56 4.52
8536 9432 1.346395 AGTCATCAACCCGTGCAACTA 59.654 47.619 0.00 0.00 31.75 2.24
8564 9460 4.635765 TGGCTAGCAATTAATGAGACACAC 59.364 41.667 18.24 0.00 0.00 3.82
8782 9683 1.661463 AGGATCAACAAGGAGGCTCA 58.339 50.000 17.69 0.00 0.00 4.26
8836 9738 9.454859 AAGGTATAAAGATTCCAACTTCAGAAG 57.545 33.333 8.77 8.77 0.00 2.85
8846 9748 3.308688 CCAACTTCAGAAGGATCCCACAT 60.309 47.826 14.90 0.00 0.00 3.21
8867 9769 5.461737 ACATGTTTGTGGCAAAACTAAATCG 59.538 36.000 18.93 8.93 40.11 3.34
8878 9780 6.469275 GGCAAAACTAAATCGCTATCAGTTTC 59.531 38.462 9.80 2.32 38.21 2.78
8879 9781 7.244192 GCAAAACTAAATCGCTATCAGTTTCT 58.756 34.615 9.80 2.09 38.21 2.52
8880 9782 7.750903 GCAAAACTAAATCGCTATCAGTTTCTT 59.249 33.333 9.80 0.00 38.21 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
229 233 2.478890 ATGCGTCGGGAGGAGTACG 61.479 63.158 0.00 0.00 38.34 3.67
241 245 1.669115 ACAGCCTCACACATGCGTC 60.669 57.895 0.00 0.00 0.00 5.19
242 246 1.962822 CACAGCCTCACACATGCGT 60.963 57.895 0.00 0.00 0.00 5.24
298 305 2.999355 CCGGAGCAAAGAGAGAAAAGAG 59.001 50.000 0.00 0.00 0.00 2.85
300 307 3.045601 TCCGGAGCAAAGAGAGAAAAG 57.954 47.619 0.00 0.00 0.00 2.27
326 567 8.167605 TCAGGGTTCAACGTTTATAAATCAAA 57.832 30.769 0.00 0.00 0.00 2.69
373 632 9.412460 TCTCAATACGGAGGAAGTAGTAAAATA 57.588 33.333 0.00 0.00 35.58 1.40
376 635 7.255035 CGATCTCAATACGGAGGAAGTAGTAAA 60.255 40.741 0.00 0.00 35.58 2.01
382 641 3.992260 CGATCTCAATACGGAGGAAGT 57.008 47.619 0.00 0.00 35.58 3.01
389 648 4.267928 GTGTTCTTTCCGATCTCAATACGG 59.732 45.833 0.00 0.00 46.71 4.02
390 649 4.267928 GGTGTTCTTTCCGATCTCAATACG 59.732 45.833 0.00 0.00 0.00 3.06
391 650 5.175859 TGGTGTTCTTTCCGATCTCAATAC 58.824 41.667 0.00 0.00 0.00 1.89
392 651 5.414789 TGGTGTTCTTTCCGATCTCAATA 57.585 39.130 0.00 0.00 0.00 1.90
393 652 4.286297 TGGTGTTCTTTCCGATCTCAAT 57.714 40.909 0.00 0.00 0.00 2.57
394 653 3.762407 TGGTGTTCTTTCCGATCTCAA 57.238 42.857 0.00 0.00 0.00 3.02
395 654 3.399330 GTTGGTGTTCTTTCCGATCTCA 58.601 45.455 0.00 0.00 0.00 3.27
396 655 2.412089 CGTTGGTGTTCTTTCCGATCTC 59.588 50.000 0.00 0.00 0.00 2.75
397 656 2.413837 CGTTGGTGTTCTTTCCGATCT 58.586 47.619 0.00 0.00 0.00 2.75
398 657 1.463444 CCGTTGGTGTTCTTTCCGATC 59.537 52.381 0.00 0.00 0.00 3.69
399 658 1.519408 CCGTTGGTGTTCTTTCCGAT 58.481 50.000 0.00 0.00 0.00 4.18
400 659 1.161563 GCCGTTGGTGTTCTTTCCGA 61.162 55.000 0.00 0.00 0.00 4.55
401 660 1.281656 GCCGTTGGTGTTCTTTCCG 59.718 57.895 0.00 0.00 0.00 4.30
402 661 1.161563 TCGCCGTTGGTGTTCTTTCC 61.162 55.000 0.00 0.00 34.40 3.13
403 662 0.658897 TTCGCCGTTGGTGTTCTTTC 59.341 50.000 0.00 0.00 34.40 2.62
404 663 1.064952 CTTTCGCCGTTGGTGTTCTTT 59.935 47.619 0.00 0.00 34.40 2.52
405 664 0.661020 CTTTCGCCGTTGGTGTTCTT 59.339 50.000 0.00 0.00 34.40 2.52
406 665 1.782028 GCTTTCGCCGTTGGTGTTCT 61.782 55.000 0.00 0.00 34.40 3.01
407 666 1.370051 GCTTTCGCCGTTGGTGTTC 60.370 57.895 0.00 0.00 34.40 3.18
408 667 2.115911 TGCTTTCGCCGTTGGTGTT 61.116 52.632 0.00 0.00 34.40 3.32
409 668 2.515057 TGCTTTCGCCGTTGGTGT 60.515 55.556 0.00 0.00 34.40 4.16
410 669 2.051345 GTGCTTTCGCCGTTGGTG 60.051 61.111 0.00 0.00 34.43 4.17
411 670 2.203153 AGTGCTTTCGCCGTTGGT 60.203 55.556 0.00 0.00 34.43 3.67
412 671 0.669318 TAGAGTGCTTTCGCCGTTGG 60.669 55.000 0.00 0.00 34.43 3.77
413 672 0.438830 GTAGAGTGCTTTCGCCGTTG 59.561 55.000 0.00 0.00 34.43 4.10
414 673 0.317479 AGTAGAGTGCTTTCGCCGTT 59.683 50.000 0.00 0.00 34.43 4.44
415 674 0.388649 CAGTAGAGTGCTTTCGCCGT 60.389 55.000 0.00 0.00 34.43 5.68
416 675 1.078759 CCAGTAGAGTGCTTTCGCCG 61.079 60.000 0.00 0.00 34.43 6.46
417 676 0.741221 CCCAGTAGAGTGCTTTCGCC 60.741 60.000 0.00 0.00 34.43 5.54
418 677 1.362406 GCCCAGTAGAGTGCTTTCGC 61.362 60.000 0.00 0.00 0.00 4.70
419 678 0.741221 GGCCCAGTAGAGTGCTTTCG 60.741 60.000 0.00 0.00 0.00 3.46
420 679 0.741221 CGGCCCAGTAGAGTGCTTTC 60.741 60.000 0.00 0.00 0.00 2.62
421 680 1.192146 TCGGCCCAGTAGAGTGCTTT 61.192 55.000 0.00 0.00 0.00 3.51
422 681 1.609501 TCGGCCCAGTAGAGTGCTT 60.610 57.895 0.00 0.00 0.00 3.91
423 682 2.037367 TCGGCCCAGTAGAGTGCT 59.963 61.111 0.00 0.00 0.00 4.40
424 683 2.184579 GTCGGCCCAGTAGAGTGC 59.815 66.667 0.00 0.00 0.00 4.40
425 684 1.215647 GTGTCGGCCCAGTAGAGTG 59.784 63.158 0.00 0.00 0.00 3.51
426 685 1.076906 AGTGTCGGCCCAGTAGAGT 59.923 57.895 0.00 0.00 0.00 3.24
427 686 0.965866 TCAGTGTCGGCCCAGTAGAG 60.966 60.000 0.00 0.00 0.00 2.43
428 687 1.076014 TCAGTGTCGGCCCAGTAGA 59.924 57.895 0.00 0.00 0.00 2.59
429 688 1.215647 GTCAGTGTCGGCCCAGTAG 59.784 63.158 0.00 0.00 0.00 2.57
430 689 1.532078 TGTCAGTGTCGGCCCAGTA 60.532 57.895 0.00 0.00 0.00 2.74
431 690 2.842462 TGTCAGTGTCGGCCCAGT 60.842 61.111 0.00 0.00 0.00 4.00
432 691 2.357517 GTGTCAGTGTCGGCCCAG 60.358 66.667 0.00 0.00 0.00 4.45
433 692 2.842462 AGTGTCAGTGTCGGCCCA 60.842 61.111 0.00 0.00 0.00 5.36
434 693 2.357517 CAGTGTCAGTGTCGGCCC 60.358 66.667 0.00 0.00 0.00 5.80
435 694 1.373497 CTCAGTGTCAGTGTCGGCC 60.373 63.158 7.54 0.00 0.00 6.13
436 695 0.387878 CTCTCAGTGTCAGTGTCGGC 60.388 60.000 7.54 0.00 0.00 5.54
437 696 1.068885 GTCTCTCAGTGTCAGTGTCGG 60.069 57.143 7.54 0.75 0.00 4.79
438 697 1.399087 CGTCTCTCAGTGTCAGTGTCG 60.399 57.143 7.54 1.26 0.00 4.35
439 698 1.874231 TCGTCTCTCAGTGTCAGTGTC 59.126 52.381 7.54 0.00 0.00 3.67
440 699 1.968704 TCGTCTCTCAGTGTCAGTGT 58.031 50.000 7.54 0.00 0.00 3.55
441 700 3.304257 CTTTCGTCTCTCAGTGTCAGTG 58.696 50.000 0.78 0.78 0.00 3.66
442 701 2.287909 GCTTTCGTCTCTCAGTGTCAGT 60.288 50.000 0.00 0.00 0.00 3.41
443 702 2.030363 AGCTTTCGTCTCTCAGTGTCAG 60.030 50.000 0.00 0.00 0.00 3.51
444 703 1.957177 AGCTTTCGTCTCTCAGTGTCA 59.043 47.619 0.00 0.00 0.00 3.58
445 704 2.715737 AGCTTTCGTCTCTCAGTGTC 57.284 50.000 0.00 0.00 0.00 3.67
446 705 2.490115 CCTAGCTTTCGTCTCTCAGTGT 59.510 50.000 0.00 0.00 0.00 3.55
447 706 2.159310 CCCTAGCTTTCGTCTCTCAGTG 60.159 54.545 0.00 0.00 0.00 3.66
448 707 2.096248 CCCTAGCTTTCGTCTCTCAGT 58.904 52.381 0.00 0.00 0.00 3.41
449 708 1.407258 CCCCTAGCTTTCGTCTCTCAG 59.593 57.143 0.00 0.00 0.00 3.35
450 709 1.005569 TCCCCTAGCTTTCGTCTCTCA 59.994 52.381 0.00 0.00 0.00 3.27
451 710 1.679153 CTCCCCTAGCTTTCGTCTCTC 59.321 57.143 0.00 0.00 0.00 3.20
452 711 1.770294 CTCCCCTAGCTTTCGTCTCT 58.230 55.000 0.00 0.00 0.00 3.10
463 722 3.652869 TCTAATCCCATTTGCTCCCCTAG 59.347 47.826 0.00 0.00 0.00 3.02
464 723 3.652869 CTCTAATCCCATTTGCTCCCCTA 59.347 47.826 0.00 0.00 0.00 3.53
465 724 2.444766 CTCTAATCCCATTTGCTCCCCT 59.555 50.000 0.00 0.00 0.00 4.79
466 725 2.443255 TCTCTAATCCCATTTGCTCCCC 59.557 50.000 0.00 0.00 0.00 4.81
467 726 3.481453 GTCTCTAATCCCATTTGCTCCC 58.519 50.000 0.00 0.00 0.00 4.30
468 727 3.481453 GGTCTCTAATCCCATTTGCTCC 58.519 50.000 0.00 0.00 0.00 4.70
469 728 3.481453 GGGTCTCTAATCCCATTTGCTC 58.519 50.000 0.00 0.00 42.95 4.26
470 729 2.175715 GGGGTCTCTAATCCCATTTGCT 59.824 50.000 2.64 0.00 45.06 3.91
471 730 2.091885 TGGGGTCTCTAATCCCATTTGC 60.092 50.000 0.00 0.00 45.04 3.68
472 731 3.951563 TGGGGTCTCTAATCCCATTTG 57.048 47.619 0.00 0.00 45.04 2.32
477 736 3.232662 GACTACTGGGGTCTCTAATCCC 58.767 54.545 0.00 0.00 42.73 3.85
478 737 3.117054 AGGACTACTGGGGTCTCTAATCC 60.117 52.174 0.00 0.00 34.47 3.01
479 738 4.187506 AGGACTACTGGGGTCTCTAATC 57.812 50.000 0.00 0.00 34.47 1.75
480 739 4.448054 GCTAGGACTACTGGGGTCTCTAAT 60.448 50.000 0.00 0.00 34.47 1.73
481 740 3.117587 GCTAGGACTACTGGGGTCTCTAA 60.118 52.174 0.00 0.00 34.47 2.10
482 741 2.442502 GCTAGGACTACTGGGGTCTCTA 59.557 54.545 0.00 0.00 34.47 2.43
483 742 1.215924 GCTAGGACTACTGGGGTCTCT 59.784 57.143 0.00 0.00 34.47 3.10
484 743 1.694844 GCTAGGACTACTGGGGTCTC 58.305 60.000 0.00 0.00 34.47 3.36
485 744 0.262285 GGCTAGGACTACTGGGGTCT 59.738 60.000 0.00 0.00 34.47 3.85
486 745 1.108132 CGGCTAGGACTACTGGGGTC 61.108 65.000 0.00 0.00 0.00 4.46
487 746 1.076192 CGGCTAGGACTACTGGGGT 60.076 63.158 0.00 0.00 0.00 4.95
488 747 0.184451 TACGGCTAGGACTACTGGGG 59.816 60.000 0.00 0.00 0.00 4.96
489 748 2.062971 TTACGGCTAGGACTACTGGG 57.937 55.000 0.00 0.00 0.00 4.45
490 749 2.223433 CGTTTACGGCTAGGACTACTGG 60.223 54.545 0.00 0.00 35.37 4.00
491 750 2.679837 TCGTTTACGGCTAGGACTACTG 59.320 50.000 2.09 0.00 40.29 2.74
492 751 2.991250 TCGTTTACGGCTAGGACTACT 58.009 47.619 2.09 0.00 40.29 2.57
493 752 3.549625 CCATCGTTTACGGCTAGGACTAC 60.550 52.174 2.09 0.00 40.29 2.73
494 753 2.620115 CCATCGTTTACGGCTAGGACTA 59.380 50.000 2.09 0.00 40.29 2.59
495 754 1.407979 CCATCGTTTACGGCTAGGACT 59.592 52.381 2.09 0.00 40.29 3.85
496 755 1.406539 TCCATCGTTTACGGCTAGGAC 59.593 52.381 2.09 0.00 40.29 3.85
497 756 1.766494 TCCATCGTTTACGGCTAGGA 58.234 50.000 2.09 2.77 40.29 2.94
498 757 2.814280 ATCCATCGTTTACGGCTAGG 57.186 50.000 2.09 0.55 40.29 3.02
499 758 4.500603 AGTATCCATCGTTTACGGCTAG 57.499 45.455 2.09 0.00 40.29 3.42
500 759 4.456911 CCTAGTATCCATCGTTTACGGCTA 59.543 45.833 2.09 0.00 40.29 3.93
501 760 3.255149 CCTAGTATCCATCGTTTACGGCT 59.745 47.826 2.09 0.00 40.29 5.52
502 761 3.005155 ACCTAGTATCCATCGTTTACGGC 59.995 47.826 2.09 0.00 40.29 5.68
503 762 4.543692 CACCTAGTATCCATCGTTTACGG 58.456 47.826 2.09 0.00 40.29 4.02
504 763 3.979495 GCACCTAGTATCCATCGTTTACG 59.021 47.826 0.00 0.00 41.45 3.18
505 764 4.982916 CAGCACCTAGTATCCATCGTTTAC 59.017 45.833 0.00 0.00 0.00 2.01
506 765 4.647853 ACAGCACCTAGTATCCATCGTTTA 59.352 41.667 0.00 0.00 0.00 2.01
507 766 3.451178 ACAGCACCTAGTATCCATCGTTT 59.549 43.478 0.00 0.00 0.00 3.60
508 767 3.031736 ACAGCACCTAGTATCCATCGTT 58.968 45.455 0.00 0.00 0.00 3.85
509 768 2.362397 CACAGCACCTAGTATCCATCGT 59.638 50.000 0.00 0.00 0.00 3.73
510 769 2.864097 GCACAGCACCTAGTATCCATCG 60.864 54.545 0.00 0.00 0.00 3.84
511 770 2.760374 GCACAGCACCTAGTATCCATC 58.240 52.381 0.00 0.00 0.00 3.51
512 771 1.069204 CGCACAGCACCTAGTATCCAT 59.931 52.381 0.00 0.00 0.00 3.41
513 772 0.459899 CGCACAGCACCTAGTATCCA 59.540 55.000 0.00 0.00 0.00 3.41
514 773 0.744874 TCGCACAGCACCTAGTATCC 59.255 55.000 0.00 0.00 0.00 2.59
515 774 1.405821 AGTCGCACAGCACCTAGTATC 59.594 52.381 0.00 0.00 0.00 2.24
516 775 1.405821 GAGTCGCACAGCACCTAGTAT 59.594 52.381 0.00 0.00 0.00 2.12
517 776 0.809385 GAGTCGCACAGCACCTAGTA 59.191 55.000 0.00 0.00 0.00 1.82
518 777 1.587054 GAGTCGCACAGCACCTAGT 59.413 57.895 0.00 0.00 0.00 2.57
519 778 1.515088 CGAGTCGCACAGCACCTAG 60.515 63.158 0.00 0.00 0.00 3.02
520 779 1.969589 TCGAGTCGCACAGCACCTA 60.970 57.895 7.92 0.00 0.00 3.08
521 780 3.295273 TCGAGTCGCACAGCACCT 61.295 61.111 7.92 0.00 0.00 4.00
522 781 3.106407 GTCGAGTCGCACAGCACC 61.106 66.667 7.92 0.00 0.00 5.01
523 782 3.106407 GGTCGAGTCGCACAGCAC 61.106 66.667 7.92 0.00 0.00 4.40
524 783 4.357947 GGGTCGAGTCGCACAGCA 62.358 66.667 7.92 0.00 0.00 4.41
526 785 4.039357 ACGGGTCGAGTCGCACAG 62.039 66.667 7.92 6.29 0.00 3.66
527 786 4.337060 CACGGGTCGAGTCGCACA 62.337 66.667 7.92 0.00 0.00 4.57
531 790 4.039357 ACTGCACGGGTCGAGTCG 62.039 66.667 6.09 6.09 0.00 4.18
532 791 2.430921 CACTGCACGGGTCGAGTC 60.431 66.667 0.00 0.00 0.00 3.36
533 792 4.664677 GCACTGCACGGGTCGAGT 62.665 66.667 0.00 0.00 0.00 4.18
534 793 4.363990 AGCACTGCACGGGTCGAG 62.364 66.667 3.30 0.00 0.00 4.04
535 794 4.662961 CAGCACTGCACGGGTCGA 62.663 66.667 3.30 0.00 0.00 4.20
536 795 3.567478 TACAGCACTGCACGGGTCG 62.567 63.158 3.30 0.00 0.00 4.79
537 796 1.738099 CTACAGCACTGCACGGGTC 60.738 63.158 3.30 0.00 0.00 4.46
538 797 2.343758 CTACAGCACTGCACGGGT 59.656 61.111 3.30 0.00 0.00 5.28
539 798 2.225791 TAGCTACAGCACTGCACGGG 62.226 60.000 3.30 0.00 45.16 5.28
540 799 0.389817 TTAGCTACAGCACTGCACGG 60.390 55.000 3.30 0.00 45.16 4.94
541 800 0.716108 GTTAGCTACAGCACTGCACG 59.284 55.000 3.30 0.00 45.16 5.34
542 801 0.716108 CGTTAGCTACAGCACTGCAC 59.284 55.000 3.30 0.00 45.16 4.57
543 802 1.014044 GCGTTAGCTACAGCACTGCA 61.014 55.000 13.09 0.00 45.16 4.41
544 803 1.710339 GCGTTAGCTACAGCACTGC 59.290 57.895 13.09 0.00 45.16 4.40
545 804 0.732880 ACGCGTTAGCTACAGCACTG 60.733 55.000 5.58 0.00 45.16 3.66
546 805 0.038526 AACGCGTTAGCTACAGCACT 60.039 50.000 25.38 0.00 45.16 4.40
547 806 1.621107 TAACGCGTTAGCTACAGCAC 58.379 50.000 26.87 2.42 45.16 4.40
548 807 2.256174 CTTAACGCGTTAGCTACAGCA 58.744 47.619 28.48 12.79 45.16 4.41
549 808 2.257034 ACTTAACGCGTTAGCTACAGC 58.743 47.619 28.48 9.03 42.32 4.40
550 809 4.674211 GGATACTTAACGCGTTAGCTACAG 59.326 45.833 28.48 24.11 42.32 2.74
551 810 4.498009 GGGATACTTAACGCGTTAGCTACA 60.498 45.833 28.48 14.84 42.32 2.74
552 811 3.977579 GGGATACTTAACGCGTTAGCTAC 59.022 47.826 28.48 19.45 42.32 3.58
553 812 3.303990 CGGGATACTTAACGCGTTAGCTA 60.304 47.826 28.48 21.40 42.32 3.32
554 813 2.542411 CGGGATACTTAACGCGTTAGCT 60.542 50.000 28.48 20.12 42.32 3.32
555 814 1.783140 CGGGATACTTAACGCGTTAGC 59.217 52.381 28.48 14.83 37.60 3.09
556 815 1.783140 GCGGGATACTTAACGCGTTAG 59.217 52.381 28.48 23.56 42.66 2.34
557 816 1.838913 GCGGGATACTTAACGCGTTA 58.161 50.000 26.87 26.87 42.66 3.18
558 817 2.669419 GCGGGATACTTAACGCGTT 58.331 52.632 29.27 29.27 42.66 4.84
559 818 4.407551 GCGGGATACTTAACGCGT 57.592 55.556 5.58 5.58 42.66 6.01
562 821 3.284197 CCAGGCGGGATACTTAACG 57.716 57.895 0.00 0.00 40.01 3.18
573 832 4.301027 GCGATACTCCCCAGGCGG 62.301 72.222 0.00 0.00 0.00 6.13
574 833 2.978452 CTTGCGATACTCCCCAGGCG 62.978 65.000 0.00 0.00 0.00 5.52
575 834 1.227674 CTTGCGATACTCCCCAGGC 60.228 63.158 0.00 0.00 0.00 4.85
576 835 0.830648 TTCTTGCGATACTCCCCAGG 59.169 55.000 0.00 0.00 0.00 4.45
577 836 2.103094 TCATTCTTGCGATACTCCCCAG 59.897 50.000 0.00 0.00 0.00 4.45
578 837 2.115427 TCATTCTTGCGATACTCCCCA 58.885 47.619 0.00 0.00 0.00 4.96
579 838 2.910688 TCATTCTTGCGATACTCCCC 57.089 50.000 0.00 0.00 0.00 4.81
580 839 4.192317 AGTTTCATTCTTGCGATACTCCC 58.808 43.478 0.00 0.00 0.00 4.30
581 840 4.870426 TGAGTTTCATTCTTGCGATACTCC 59.130 41.667 0.00 0.00 31.99 3.85
582 841 6.408858 TTGAGTTTCATTCTTGCGATACTC 57.591 37.500 0.00 0.00 33.25 2.59
583 842 6.128172 CCTTTGAGTTTCATTCTTGCGATACT 60.128 38.462 0.00 0.00 0.00 2.12
584 843 6.024049 CCTTTGAGTTTCATTCTTGCGATAC 58.976 40.000 0.00 0.00 0.00 2.24
585 844 5.937540 TCCTTTGAGTTTCATTCTTGCGATA 59.062 36.000 0.00 0.00 0.00 2.92
586 845 4.761739 TCCTTTGAGTTTCATTCTTGCGAT 59.238 37.500 0.00 0.00 0.00 4.58
587 846 4.133820 TCCTTTGAGTTTCATTCTTGCGA 58.866 39.130 0.00 0.00 0.00 5.10
588 847 4.488126 TCCTTTGAGTTTCATTCTTGCG 57.512 40.909 0.00 0.00 0.00 4.85
589 848 6.925165 TCAATTCCTTTGAGTTTCATTCTTGC 59.075 34.615 0.00 0.00 39.44 4.01
590 849 7.113965 CGTCAATTCCTTTGAGTTTCATTCTTG 59.886 37.037 0.00 0.00 44.89 3.02
591 850 7.141363 CGTCAATTCCTTTGAGTTTCATTCTT 58.859 34.615 0.00 0.00 44.89 2.52
592 851 6.294176 CCGTCAATTCCTTTGAGTTTCATTCT 60.294 38.462 0.00 0.00 44.89 2.40
593 852 5.858581 CCGTCAATTCCTTTGAGTTTCATTC 59.141 40.000 0.00 0.00 44.89 2.67
594 853 5.278957 CCCGTCAATTCCTTTGAGTTTCATT 60.279 40.000 0.00 0.00 44.89 2.57
595 854 4.218417 CCCGTCAATTCCTTTGAGTTTCAT 59.782 41.667 0.00 0.00 44.89 2.57
596 855 3.568007 CCCGTCAATTCCTTTGAGTTTCA 59.432 43.478 0.00 0.00 44.89 2.69
597 856 3.057526 CCCCGTCAATTCCTTTGAGTTTC 60.058 47.826 0.00 0.00 44.89 2.78
598 857 2.890945 CCCCGTCAATTCCTTTGAGTTT 59.109 45.455 0.00 0.00 44.89 2.66
599 858 2.514803 CCCCGTCAATTCCTTTGAGTT 58.485 47.619 0.00 0.00 44.89 3.01
600 859 1.271926 CCCCCGTCAATTCCTTTGAGT 60.272 52.381 0.00 0.00 44.89 3.41
601 860 1.463674 CCCCCGTCAATTCCTTTGAG 58.536 55.000 0.00 0.00 44.89 3.02
602 861 0.610785 GCCCCCGTCAATTCCTTTGA 60.611 55.000 0.00 0.00 42.09 2.69
603 862 1.604147 GGCCCCCGTCAATTCCTTTG 61.604 60.000 0.00 0.00 36.61 2.77
604 863 1.304962 GGCCCCCGTCAATTCCTTT 60.305 57.895 0.00 0.00 0.00 3.11
605 864 2.359011 GGCCCCCGTCAATTCCTT 59.641 61.111 0.00 0.00 0.00 3.36
606 865 3.739613 GGGCCCCCGTCAATTCCT 61.740 66.667 12.23 0.00 0.00 3.36
624 883 3.058160 ATGCTCCACCGCTTGTGC 61.058 61.111 0.00 0.00 44.01 4.57
625 884 1.968017 ACATGCTCCACCGCTTGTG 60.968 57.895 0.00 0.00 43.78 3.33
626 885 1.968017 CACATGCTCCACCGCTTGT 60.968 57.895 0.00 0.00 45.56 3.16
627 886 2.693762 CCACATGCTCCACCGCTTG 61.694 63.158 0.00 0.00 39.94 4.01
628 887 2.360350 CCACATGCTCCACCGCTT 60.360 61.111 0.00 0.00 0.00 4.68
629 888 2.697147 AAACCACATGCTCCACCGCT 62.697 55.000 0.00 0.00 0.00 5.52
630 889 0.958382 TAAACCACATGCTCCACCGC 60.958 55.000 0.00 0.00 0.00 5.68
631 890 1.529226 TTAAACCACATGCTCCACCG 58.471 50.000 0.00 0.00 0.00 4.94
632 891 3.427503 CGAATTAAACCACATGCTCCACC 60.428 47.826 0.00 0.00 0.00 4.61
633 892 3.438781 TCGAATTAAACCACATGCTCCAC 59.561 43.478 0.00 0.00 0.00 4.02
634 893 3.680490 TCGAATTAAACCACATGCTCCA 58.320 40.909 0.00 0.00 0.00 3.86
635 894 4.601019 CATCGAATTAAACCACATGCTCC 58.399 43.478 0.00 0.00 0.00 4.70
636 895 4.037690 GCATCGAATTAAACCACATGCTC 58.962 43.478 0.00 0.00 33.80 4.26
637 896 3.443329 TGCATCGAATTAAACCACATGCT 59.557 39.130 0.00 0.00 36.84 3.79
638 897 3.768406 TGCATCGAATTAAACCACATGC 58.232 40.909 0.00 0.00 36.51 4.06
639 898 5.220265 GCTTTGCATCGAATTAAACCACATG 60.220 40.000 0.00 0.00 0.00 3.21
640 899 4.864247 GCTTTGCATCGAATTAAACCACAT 59.136 37.500 0.00 0.00 0.00 3.21
641 900 4.233789 GCTTTGCATCGAATTAAACCACA 58.766 39.130 0.00 0.00 0.00 4.17
642 901 3.300590 CGCTTTGCATCGAATTAAACCAC 59.699 43.478 0.00 0.00 0.00 4.16
643 902 3.189495 TCGCTTTGCATCGAATTAAACCA 59.811 39.130 4.14 0.00 0.00 3.67
644 903 3.753842 TCGCTTTGCATCGAATTAAACC 58.246 40.909 4.14 0.00 0.00 3.27
645 904 5.739237 TTTCGCTTTGCATCGAATTAAAC 57.261 34.783 16.08 0.00 43.09 2.01
646 905 6.755461 TTTTTCGCTTTGCATCGAATTAAA 57.245 29.167 16.08 12.64 43.09 1.52
647 906 6.364706 ACATTTTTCGCTTTGCATCGAATTAA 59.635 30.769 16.08 13.87 43.09 1.40
648 907 5.861251 ACATTTTTCGCTTTGCATCGAATTA 59.139 32.000 16.08 9.87 43.09 1.40
649 908 4.685628 ACATTTTTCGCTTTGCATCGAATT 59.314 33.333 16.08 5.81 43.09 2.17
650 909 4.236935 ACATTTTTCGCTTTGCATCGAAT 58.763 34.783 16.08 3.50 43.09 3.34
651 910 3.637432 ACATTTTTCGCTTTGCATCGAA 58.363 36.364 12.79 12.79 42.11 3.71
652 911 3.281341 ACATTTTTCGCTTTGCATCGA 57.719 38.095 0.00 0.00 0.00 3.59
653 912 4.487004 CGTAACATTTTTCGCTTTGCATCG 60.487 41.667 0.00 0.00 0.00 3.84
654 913 4.615121 TCGTAACATTTTTCGCTTTGCATC 59.385 37.500 0.00 0.00 0.00 3.91
655 914 4.541779 TCGTAACATTTTTCGCTTTGCAT 58.458 34.783 0.00 0.00 0.00 3.96
656 915 3.953766 TCGTAACATTTTTCGCTTTGCA 58.046 36.364 0.00 0.00 0.00 4.08
657 916 4.215965 TCTCGTAACATTTTTCGCTTTGC 58.784 39.130 0.00 0.00 0.00 3.68
658 917 6.911484 AATCTCGTAACATTTTTCGCTTTG 57.089 33.333 0.00 0.00 0.00 2.77
659 918 8.500773 TCTAAATCTCGTAACATTTTTCGCTTT 58.499 29.630 0.00 0.00 0.00 3.51
660 919 8.025243 TCTAAATCTCGTAACATTTTTCGCTT 57.975 30.769 0.00 0.00 0.00 4.68
661 920 7.591006 TCTAAATCTCGTAACATTTTTCGCT 57.409 32.000 0.00 0.00 0.00 4.93
662 921 8.822105 AATCTAAATCTCGTAACATTTTTCGC 57.178 30.769 0.00 0.00 0.00 4.70
703 962 9.810545 GTTAGAGCTCTAATATGTCTTGAACTT 57.189 33.333 32.99 2.28 40.20 2.66
704 963 8.417884 GGTTAGAGCTCTAATATGTCTTGAACT 58.582 37.037 32.99 2.63 40.20 3.01
705 964 8.198109 TGGTTAGAGCTCTAATATGTCTTGAAC 58.802 37.037 32.99 20.28 40.20 3.18
706 965 8.306313 TGGTTAGAGCTCTAATATGTCTTGAA 57.694 34.615 32.99 10.77 40.20 2.69
707 966 7.898014 TGGTTAGAGCTCTAATATGTCTTGA 57.102 36.000 32.99 9.58 40.20 3.02
708 967 8.147058 ACATGGTTAGAGCTCTAATATGTCTTG 58.853 37.037 34.96 27.76 40.70 3.02
709 968 8.256356 ACATGGTTAGAGCTCTAATATGTCTT 57.744 34.615 34.96 24.72 40.70 3.01
710 969 7.847711 ACATGGTTAGAGCTCTAATATGTCT 57.152 36.000 34.96 25.14 40.70 3.41
711 970 8.894768 AAACATGGTTAGAGCTCTAATATGTC 57.105 34.615 37.18 26.80 42.04 3.06
712 971 7.653713 CGAAACATGGTTAGAGCTCTAATATGT 59.346 37.037 34.96 34.96 43.18 2.29
713 972 7.116948 CCGAAACATGGTTAGAGCTCTAATATG 59.883 40.741 34.17 34.17 40.20 1.78
714 973 7.155328 CCGAAACATGGTTAGAGCTCTAATAT 58.845 38.462 32.99 26.41 40.20 1.28
715 974 6.513180 CCGAAACATGGTTAGAGCTCTAATA 58.487 40.000 32.99 25.59 40.20 0.98
716 975 5.360591 CCGAAACATGGTTAGAGCTCTAAT 58.639 41.667 32.99 18.81 40.20 1.73
717 976 4.755411 CCGAAACATGGTTAGAGCTCTAA 58.245 43.478 28.47 28.47 36.20 2.10
718 977 3.430374 GCCGAAACATGGTTAGAGCTCTA 60.430 47.826 19.72 19.72 0.00 2.43
719 978 2.678190 GCCGAAACATGGTTAGAGCTCT 60.678 50.000 22.17 22.17 0.00 4.09
720 979 1.666189 GCCGAAACATGGTTAGAGCTC 59.334 52.381 5.27 5.27 0.00 4.09
721 980 1.279271 AGCCGAAACATGGTTAGAGCT 59.721 47.619 5.03 9.10 0.00 4.09
722 981 1.739067 AGCCGAAACATGGTTAGAGC 58.261 50.000 5.03 7.01 0.00 4.09
723 982 3.074412 ACAAGCCGAAACATGGTTAGAG 58.926 45.455 5.03 0.00 0.00 2.43
724 983 2.811431 CACAAGCCGAAACATGGTTAGA 59.189 45.455 5.03 0.00 0.00 2.10
725 984 2.811431 TCACAAGCCGAAACATGGTTAG 59.189 45.455 0.00 0.00 0.00 2.34
726 985 2.852449 TCACAAGCCGAAACATGGTTA 58.148 42.857 0.00 0.00 0.00 2.85
727 986 1.686355 TCACAAGCCGAAACATGGTT 58.314 45.000 0.00 0.00 0.00 3.67
728 987 1.812571 GATCACAAGCCGAAACATGGT 59.187 47.619 0.00 0.00 0.00 3.55
729 988 1.811965 TGATCACAAGCCGAAACATGG 59.188 47.619 0.00 0.00 0.00 3.66
730 989 3.557577 TTGATCACAAGCCGAAACATG 57.442 42.857 0.00 0.00 0.00 3.21
731 990 4.361451 GATTGATCACAAGCCGAAACAT 57.639 40.909 0.00 0.00 39.46 2.71
732 991 3.829886 GATTGATCACAAGCCGAAACA 57.170 42.857 0.00 0.00 39.46 2.83
739 998 6.233434 TGGTATCTATGGATTGATCACAAGC 58.767 40.000 0.00 0.00 41.04 4.01
740 999 8.859236 ATTGGTATCTATGGATTGATCACAAG 57.141 34.615 0.00 0.00 39.46 3.16
741 1000 7.603784 CGATTGGTATCTATGGATTGATCACAA 59.396 37.037 0.00 0.00 40.42 3.33
742 1001 7.039082 TCGATTGGTATCTATGGATTGATCACA 60.039 37.037 0.00 0.00 33.71 3.58
743 1002 7.323420 TCGATTGGTATCTATGGATTGATCAC 58.677 38.462 0.00 0.00 33.71 3.06
744 1003 7.480760 TCGATTGGTATCTATGGATTGATCA 57.519 36.000 0.00 0.00 33.71 2.92
745 1004 8.777865 TTTCGATTGGTATCTATGGATTGATC 57.222 34.615 0.00 0.00 33.71 2.92
746 1005 9.745018 ATTTTCGATTGGTATCTATGGATTGAT 57.255 29.630 0.00 0.00 33.71 2.57
759 1018 9.878667 TGAGTGTCTATTTATTTTCGATTGGTA 57.121 29.630 0.00 0.00 0.00 3.25
760 1019 8.786826 TGAGTGTCTATTTATTTTCGATTGGT 57.213 30.769 0.00 0.00 0.00 3.67
787 1046 8.575649 AAACGTCTTATATCATGGGACTTTTT 57.424 30.769 0.00 0.00 28.80 1.94
788 1047 8.575649 AAAACGTCTTATATCATGGGACTTTT 57.424 30.769 0.00 0.00 32.52 2.27
789 1048 8.575649 AAAAACGTCTTATATCATGGGACTTT 57.424 30.769 0.00 0.00 0.00 2.66
850 1109 9.566432 TTGGCAAAAAGGACAAAAATATTACAT 57.434 25.926 0.00 0.00 31.47 2.29
851 1110 8.831550 GTTGGCAAAAAGGACAAAAATATTACA 58.168 29.630 0.00 0.00 37.58 2.41
852 1111 8.831550 TGTTGGCAAAAAGGACAAAAATATTAC 58.168 29.630 0.00 0.00 37.58 1.89
883 1152 1.546476 AGGCCGACTTGTACTCTTGAG 59.454 52.381 0.00 0.00 0.00 3.02
884 1153 1.272490 CAGGCCGACTTGTACTCTTGA 59.728 52.381 0.00 0.00 0.00 3.02
984 1260 3.270027 TGCCATCGAGTTGTTTGGATAG 58.730 45.455 4.66 0.00 0.00 2.08
1033 1314 2.568623 AAAGTTGCCATCGTCTCCTT 57.431 45.000 0.00 0.00 0.00 3.36
1142 1423 4.642445 TGCAAACATGCATTATCTCAGG 57.358 40.909 0.00 0.00 40.23 3.86
1155 1436 0.385849 CGACGTGTGCATGCAAACAT 60.386 50.000 34.25 24.54 33.95 2.71
1156 1437 1.010238 CGACGTGTGCATGCAAACA 60.010 52.632 34.25 21.94 33.95 2.83
1157 1438 1.725625 CCGACGTGTGCATGCAAAC 60.726 57.895 28.06 28.06 0.00 2.93
1158 1439 2.636462 CCGACGTGTGCATGCAAA 59.364 55.556 24.58 15.92 0.00 3.68
1159 1440 3.353029 CCCGACGTGTGCATGCAA 61.353 61.111 24.58 10.26 0.00 4.08
1160 1441 4.617520 ACCCGACGTGTGCATGCA 62.618 61.111 18.46 18.46 0.00 3.96
1161 1442 4.088762 CACCCGACGTGTGCATGC 62.089 66.667 11.82 11.82 37.73 4.06
1162 1443 1.502990 TTTCACCCGACGTGTGCATG 61.503 55.000 5.52 0.00 43.51 4.06
1163 1444 1.227704 TTTCACCCGACGTGTGCAT 60.228 52.632 5.52 0.00 43.51 3.96
1164 1445 1.885388 CTTTCACCCGACGTGTGCA 60.885 57.895 5.52 0.00 43.51 4.57
1165 1446 2.604174 CCTTTCACCCGACGTGTGC 61.604 63.158 5.52 0.00 43.51 4.57
1166 1447 0.531090 TTCCTTTCACCCGACGTGTG 60.531 55.000 3.89 3.89 43.51 3.82
1167 1448 0.249741 CTTCCTTTCACCCGACGTGT 60.250 55.000 0.00 0.00 43.51 4.49
1168 1449 0.249741 ACTTCCTTTCACCCGACGTG 60.250 55.000 0.00 0.00 44.50 4.49
1169 1450 1.331214 TACTTCCTTTCACCCGACGT 58.669 50.000 0.00 0.00 0.00 4.34
1170 1451 2.443887 TTACTTCCTTTCACCCGACG 57.556 50.000 0.00 0.00 0.00 5.12
1171 1452 6.806388 TTAAATTACTTCCTTTCACCCGAC 57.194 37.500 0.00 0.00 0.00 4.79
1172 1453 6.999871 ACTTTAAATTACTTCCTTTCACCCGA 59.000 34.615 0.00 0.00 0.00 5.14
1173 1454 7.210718 ACTTTAAATTACTTCCTTTCACCCG 57.789 36.000 0.00 0.00 0.00 5.28
1174 1455 9.293404 ACTACTTTAAATTACTTCCTTTCACCC 57.707 33.333 0.00 0.00 0.00 4.61
1184 1465 9.667107 TGCAGCATCTACTACTTTAAATTACTT 57.333 29.630 0.00 0.00 0.00 2.24
1185 1466 9.667107 TTGCAGCATCTACTACTTTAAATTACT 57.333 29.630 0.00 0.00 0.00 2.24
1208 1489 9.740710 ACCCTATAGTTATCTCCAAATAATTGC 57.259 33.333 0.00 0.00 35.10 3.56
1213 1494 7.177921 CCACGACCCTATAGTTATCTCCAAATA 59.822 40.741 0.00 0.00 0.00 1.40
1335 1618 4.939052 TTTCTTTAAAATTGGGCCGACA 57.061 36.364 0.00 0.00 0.00 4.35
1812 2095 3.980134 CACAAAAACGTTGCATAGCATCA 59.020 39.130 0.00 0.00 38.76 3.07
2039 2330 7.023575 GTGTGCAACTCTTGGTTTTATGATAG 58.976 38.462 0.00 0.00 38.04 2.08
4313 4747 2.787473 TCCCACCTGCATTTCACTAG 57.213 50.000 0.00 0.00 0.00 2.57
4992 5472 1.035139 CCAATGCATAGGGCTGGAAC 58.965 55.000 8.43 0.00 45.15 3.62
5538 6039 6.727824 TCTTATAGCAAGTGACAAAGCTTC 57.272 37.500 0.00 0.00 38.47 3.86
5551 6052 6.935167 TCAAGAGTGACACATCTTATAGCAA 58.065 36.000 8.59 0.00 34.04 3.91
5665 6168 5.591877 GCAGTCACCCAAATGAATAAGAGAT 59.408 40.000 0.00 0.00 0.00 2.75
5836 6347 6.978659 CGAACTAGCTAGGTTTATCACATGAA 59.021 38.462 24.35 0.00 0.00 2.57
6013 6528 5.098893 CGTGTCAAAAAGTCAATTGGTGAA 58.901 37.500 5.42 0.00 38.23 3.18
6285 6813 0.264359 AGCCCTATGAGCTCCTCTGT 59.736 55.000 12.15 0.00 34.91 3.41
6460 6991 9.775854 ATGGTTTTCATGAAAAATATCAACACA 57.224 25.926 30.07 17.68 41.37 3.72
6515 7050 3.192422 TCAACAATTACATTTGCGGGGAG 59.808 43.478 0.00 0.00 0.00 4.30
6794 7581 0.465705 ATGCTACCACAGATGTCCCG 59.534 55.000 0.00 0.00 0.00 5.14
6848 7635 5.048434 GCTAGAAAGCCAATTGAAAGTGTCT 60.048 40.000 7.12 4.55 43.40 3.41
6873 7660 6.675728 GCAAAAGACTTGAGAAGTTTCGTCTT 60.676 38.462 0.00 0.00 43.03 3.01
6917 7704 1.952990 TGTGTTGATGCCATGTCGTTT 59.047 42.857 0.00 0.00 0.00 3.60
6936 7723 8.001881 AGTACATCTCTAAGAATGTGTACCTG 57.998 38.462 14.43 0.00 41.53 4.00
7007 7802 9.334947 CACAGACAATAATTATGTCCAGATTCT 57.665 33.333 17.28 3.60 46.60 2.40
7008 7803 9.113838 ACACAGACAATAATTATGTCCAGATTC 57.886 33.333 17.28 1.97 46.60 2.52
7206 8015 5.180868 GCTACCATGAGCTAATCAAGATTGG 59.819 44.000 5.59 3.84 42.53 3.16
7226 8035 7.360185 GCTTAGTCCAGTTTCACTTTAAGCTAC 60.360 40.741 5.84 0.00 33.88 3.58
7227 8036 6.649557 GCTTAGTCCAGTTTCACTTTAAGCTA 59.350 38.462 5.84 0.00 33.88 3.32
7233 8043 4.022849 GCATGCTTAGTCCAGTTTCACTTT 60.023 41.667 11.37 0.00 0.00 2.66
7259 8069 5.643421 ATTCTTCATCTCATGCCTAGGTT 57.357 39.130 11.31 0.00 0.00 3.50
7273 8083 5.012046 TGACCTATGCCATCGTATTCTTCAT 59.988 40.000 0.00 0.00 0.00 2.57
7277 8087 5.952347 TCTATGACCTATGCCATCGTATTCT 59.048 40.000 0.00 0.00 0.00 2.40
7297 8107 0.268869 TCATGGCCCCCACTCTCTAT 59.731 55.000 0.00 0.00 35.80 1.98
7344 8154 2.352814 CCATACCTACATAGCAGCCGTC 60.353 54.545 0.00 0.00 0.00 4.79
7345 8155 1.618837 CCATACCTACATAGCAGCCGT 59.381 52.381 0.00 0.00 0.00 5.68
7443 8267 6.786461 TCCTCACTTGAGATCTGATAATGGAT 59.214 38.462 0.00 0.00 44.74 3.41
7452 8276 1.761784 CCCCTCCTCACTTGAGATCTG 59.238 57.143 0.00 0.00 44.74 2.90
7775 8667 5.689383 TGTTATCCACAGTTCTTGAAAGC 57.311 39.130 0.00 0.00 0.00 3.51
7863 8755 5.588648 CGTACAACTATTCCATTGGGTCAAT 59.411 40.000 2.09 0.00 34.04 2.57
7881 8773 1.737236 GTTGATGCATGCCTCGTACAA 59.263 47.619 16.68 9.32 0.00 2.41
7899 8791 4.589908 CTGCTACTTTTGTATCCCCTGTT 58.410 43.478 0.00 0.00 33.96 3.16
7922 8814 8.800972 CATTATTGTTGCAAAAGCAGTGTATAG 58.199 33.333 0.00 0.00 0.00 1.31
7951 8843 8.078060 TCTTGATCACCATTCTAACATGACTA 57.922 34.615 0.00 0.00 0.00 2.59
7980 8872 5.636903 ACATGGTGGCAATCTAAGTAGAT 57.363 39.130 0.00 0.00 44.54 1.98
8018 8910 4.334203 AGCACGACATGTTTGTTTAACTGA 59.666 37.500 0.00 0.00 35.79 3.41
8032 8924 1.446792 CCAGAAGCGAGCACGACAT 60.447 57.895 8.01 0.00 42.66 3.06
8065 8957 8.364142 AGCCAATGCATAAAACAAAGTTTAGTA 58.636 29.630 0.00 0.00 41.13 1.82
8067 8959 7.656707 AGCCAATGCATAAAACAAAGTTTAG 57.343 32.000 0.00 0.00 41.13 1.85
8125 9018 1.629043 GGTAGGACCACACACAGAGA 58.371 55.000 0.00 0.00 38.42 3.10
8192 9085 8.842280 TGGATAAGTTTTGACGAGTATTTTGTT 58.158 29.630 0.00 0.00 0.00 2.83
8201 9094 6.546395 CCTTGATTGGATAAGTTTTGACGAG 58.454 40.000 0.00 0.00 0.00 4.18
8367 9263 3.657610 TCTGGAGCCAATGAGGATTAGA 58.342 45.455 0.00 0.00 41.22 2.10
8408 9304 4.988029 TGGGATGATGATTGTGATGCATA 58.012 39.130 0.00 0.00 0.00 3.14
8422 9318 7.426606 TGACAAAAATCATGATTGGGATGAT 57.573 32.000 21.39 1.16 41.41 2.45
8458 9354 7.212976 CCAATACTACTGCTGAGTATGACATT 58.787 38.462 12.80 1.99 39.52 2.71
8474 9370 8.673711 TGAAACAATGTCTATTGCCAATACTAC 58.326 33.333 0.00 0.00 46.05 2.73
8475 9371 8.800370 TGAAACAATGTCTATTGCCAATACTA 57.200 30.769 0.00 0.00 46.05 1.82
8536 9432 5.297776 GTCTCATTAATTGCTAGCCATGTGT 59.702 40.000 13.29 0.00 0.00 3.72
8608 9507 5.533154 TCATATCAAGTTTTTCCAACCGTGT 59.467 36.000 0.00 0.00 0.00 4.49
8611 9510 6.908825 TCTTCATATCAAGTTTTTCCAACCG 58.091 36.000 0.00 0.00 0.00 4.44
8829 9731 4.081406 CAAACATGTGGGATCCTTCTGAA 58.919 43.478 12.58 0.00 0.00 3.02
8846 9748 3.799420 GCGATTTAGTTTTGCCACAAACA 59.201 39.130 6.16 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.