Multiple sequence alignment - TraesCS3B01G135400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G135400 chr3B 100.000 7704 0 0 1 7704 117924485 117932188 0.000000e+00 14227.0
1 TraesCS3B01G135400 chr3B 99.174 121 1 0 7584 7704 117937184 117937304 1.300000e-52 219.0
2 TraesCS3B01G135400 chr3B 89.744 117 10 2 7584 7699 811760156 811760041 1.730000e-31 148.0
3 TraesCS3B01G135400 chr3B 96.364 55 2 0 7529 7583 117937466 117937520 2.960000e-14 91.6
4 TraesCS3B01G135400 chr3A 97.812 4159 76 12 3000 7154 84188840 84192987 0.000000e+00 7162.0
5 TraesCS3B01G135400 chr3A 98.181 2254 35 5 1 2252 84185681 84187930 0.000000e+00 3930.0
6 TraesCS3B01G135400 chr3A 97.835 693 8 5 2279 2967 84188163 84188852 0.000000e+00 1190.0
7 TraesCS3B01G135400 chr3A 90.909 77 5 2 2219 2295 84187866 84187940 1.370000e-17 102.0
8 TraesCS3B01G135400 chr3A 97.059 34 0 1 2966 2999 8854226 8854194 1.000000e-03 56.5
9 TraesCS3B01G135400 chr3D 97.344 3502 70 11 3711 7199 71968970 71972461 0.000000e+00 5930.0
10 TraesCS3B01G135400 chr3D 95.904 2539 61 29 1 2502 71965365 71967897 0.000000e+00 4072.0
11 TraesCS3B01G135400 chr3D 99.099 666 6 0 3000 3665 71968306 71968971 0.000000e+00 1197.0
12 TraesCS3B01G135400 chr3D 98.349 424 7 0 2544 2967 71967895 71968318 0.000000e+00 745.0
13 TraesCS3B01G135400 chr3D 87.850 214 18 3 7264 7472 71972443 71972653 2.150000e-60 244.0
14 TraesCS3B01G135400 chr3D 94.000 50 1 2 2331 2378 71967489 71967538 2.980000e-09 75.0
15 TraesCS3B01G135400 chr4A 98.374 123 1 1 7583 7704 651633907 651633785 1.680000e-51 215.0
16 TraesCS3B01G135400 chr4A 97.500 120 2 1 7586 7704 651628794 651628675 3.640000e-48 204.0
17 TraesCS3B01G135400 chr4A 92.424 66 4 1 7198 7263 117234090 117234026 8.230000e-15 93.5
18 TraesCS3B01G135400 chr4A 89.552 67 5 2 7197 7263 39918565 39918501 4.950000e-12 84.2
19 TraesCS3B01G135400 chr6B 97.541 122 2 1 7584 7704 646016020 646016141 2.820000e-49 207.0
20 TraesCS3B01G135400 chr6B 97.541 122 2 1 7584 7704 646021137 646021258 2.820000e-49 207.0
21 TraesCS3B01G135400 chr6B 98.485 66 1 0 7198 7263 465731806 465731741 4.880000e-22 117.0
22 TraesCS3B01G135400 chr4B 95.935 123 3 2 7584 7704 349121982 349121860 1.700000e-46 198.0
23 TraesCS3B01G135400 chr4B 95.122 123 4 2 7584 7704 349127102 349126980 7.890000e-45 193.0
24 TraesCS3B01G135400 chr4B 90.323 124 8 4 7584 7704 273695782 273695660 8.000000e-35 159.0
25 TraesCS3B01G135400 chr2D 92.647 68 4 1 7198 7265 277213053 277212987 6.360000e-16 97.1
26 TraesCS3B01G135400 chr5D 88.889 72 6 2 7197 7268 164639035 164639104 3.830000e-13 87.9
27 TraesCS3B01G135400 chr5D 88.406 69 6 2 7197 7264 432981838 432981771 1.780000e-11 82.4
28 TraesCS3B01G135400 chr1D 88.060 67 7 1 7197 7263 478023068 478023133 2.300000e-10 78.7
29 TraesCS3B01G135400 chr2B 86.765 68 8 1 7197 7264 448585072 448585138 2.980000e-09 75.0
30 TraesCS3B01G135400 chr7B 88.235 51 6 0 7213 7263 2748677 2748727 2.320000e-05 62.1
31 TraesCS3B01G135400 chr6D 97.143 35 0 1 2966 3000 353213077 353213110 3.000000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G135400 chr3B 117924485 117932188 7703 False 14227.000000 14227 100.000000 1 7704 1 chr3B.!!$F1 7703
1 TraesCS3B01G135400 chr3A 84185681 84192987 7306 False 3096.000000 7162 96.184250 1 7154 4 chr3A.!!$F1 7153
2 TraesCS3B01G135400 chr3D 71965365 71972653 7288 False 2043.833333 5930 95.424333 1 7472 6 chr3D.!!$F1 7471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 94 1.479757 GCAACCTAAAACTCACCCCCA 60.480 52.381 0.00 0.00 0.00 4.96 F
90 95 2.235891 CAACCTAAAACTCACCCCCAC 58.764 52.381 0.00 0.00 0.00 4.61 F
318 326 4.214310 TCCTTTGCAAGATTCCTCAAACA 58.786 39.130 0.00 0.00 0.00 2.83 F
2221 2292 0.692476 TGCTAATGGGAGTGTGTGCT 59.308 50.000 0.00 0.00 0.00 4.40 F
2973 3287 0.106719 AATTGTCATACCAGGCCGGG 60.107 55.000 21.67 21.67 40.22 5.73 F
2974 3288 1.994885 ATTGTCATACCAGGCCGGGG 61.995 60.000 26.70 20.23 40.22 5.73 F
2991 3305 2.191981 GGGGTCCTCCTCCATTTCTA 57.808 55.000 0.00 0.00 35.33 2.10 F
2993 3307 2.439880 GGGGTCCTCCTCCATTTCTAAG 59.560 54.545 0.00 0.00 35.33 2.18 F
4890 5213 3.056035 CAGTTGGTACCTCCTGGAACTAC 60.056 52.174 14.36 0.01 37.07 2.73 F
6493 6823 1.800586 CGTGACATCTTGAACAGTGGG 59.199 52.381 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 1911 0.960364 TCAATGGCTTCCGTTCAGGC 60.960 55.000 0.00 0.0 40.77 4.85 R
2112 2122 5.437060 TCACCTGCAATACTATTTTCCTCC 58.563 41.667 0.00 0.0 0.00 4.30 R
2243 2314 2.038952 AGAGTTGATTAGCACACTGCCA 59.961 45.455 0.00 0.0 46.52 4.92 R
3275 3589 4.334203 GCACACCCAAAACATACGATATGA 59.666 41.667 10.64 0.0 0.00 2.15 R
4500 4823 2.618816 CCCTGGCAAAGCTTGATGACTA 60.619 50.000 0.00 0.0 0.00 2.59 R
4890 5213 5.330295 GCTGCAACTATCTCATTTGAACTG 58.670 41.667 0.00 0.0 0.00 3.16 R
5031 5354 4.081697 TGCAAGTCGATCAAATGGTAGAGA 60.082 41.667 0.00 0.0 0.00 3.10 R
5121 5444 6.650807 TGTGTTGTTGATCATCTCTCTTTACC 59.349 38.462 0.00 0.0 0.00 2.85 R
6565 6895 0.748005 AGTTCACCGTGTTTGCTGCT 60.748 50.000 0.00 0.0 0.00 4.24 R
7481 7818 0.042581 TGGTGATACCTGGAGCTGGA 59.957 55.000 0.00 0.0 39.58 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 94 1.479757 GCAACCTAAAACTCACCCCCA 60.480 52.381 0.00 0.00 0.00 4.96
90 95 2.235891 CAACCTAAAACTCACCCCCAC 58.764 52.381 0.00 0.00 0.00 4.61
157 163 4.764823 TCTTTTGGAAGACGTGCCATTTAT 59.235 37.500 0.00 0.00 36.99 1.40
318 326 4.214310 TCCTTTGCAAGATTCCTCAAACA 58.786 39.130 0.00 0.00 0.00 2.83
470 479 7.145985 GGTTTTAGAGTTGAAATCCTTGTTCC 58.854 38.462 0.00 0.00 0.00 3.62
663 672 5.243060 TCCCTTTCTTTCTTTCGATTTTCCC 59.757 40.000 0.00 0.00 0.00 3.97
1152 1161 5.420725 TGTAGACACCTGATGTTAATGCT 57.579 39.130 0.00 0.00 43.56 3.79
1154 1163 7.124573 TGTAGACACCTGATGTTAATGCTAT 57.875 36.000 0.00 0.00 43.56 2.97
1885 1895 4.655963 TCTGCACAGGAGAAAGCTAATTT 58.344 39.130 0.00 0.00 0.00 1.82
1901 1911 6.355747 AGCTAATTTCTCTCCAGGAAATGAG 58.644 40.000 8.43 8.43 40.95 2.90
2004 2014 6.255887 CGACTATTTTAGATGGTGAGTTGACC 59.744 42.308 0.00 0.00 36.43 4.02
2112 2122 4.161001 ACAGGGTAAATAGTAGAACCACGG 59.839 45.833 0.00 0.00 33.46 4.94
2211 2282 3.201290 GCATCTCCGATATGCTAATGGG 58.799 50.000 10.67 0.00 45.05 4.00
2212 2283 3.118629 GCATCTCCGATATGCTAATGGGA 60.119 47.826 10.67 3.36 45.05 4.37
2214 2285 3.779444 TCTCCGATATGCTAATGGGAGT 58.221 45.455 20.91 0.00 46.46 3.85
2215 2286 3.511540 TCTCCGATATGCTAATGGGAGTG 59.488 47.826 20.91 6.41 46.46 3.51
2216 2287 3.239449 TCCGATATGCTAATGGGAGTGT 58.761 45.455 0.00 0.00 31.00 3.55
2217 2288 3.006859 TCCGATATGCTAATGGGAGTGTG 59.993 47.826 0.00 0.00 31.00 3.82
2218 2289 3.244215 CCGATATGCTAATGGGAGTGTGT 60.244 47.826 0.00 0.00 0.00 3.72
2219 2290 3.742882 CGATATGCTAATGGGAGTGTGTG 59.257 47.826 0.00 0.00 0.00 3.82
2220 2291 1.755179 ATGCTAATGGGAGTGTGTGC 58.245 50.000 0.00 0.00 0.00 4.57
2221 2292 0.692476 TGCTAATGGGAGTGTGTGCT 59.308 50.000 0.00 0.00 0.00 4.40
2222 2293 1.905894 TGCTAATGGGAGTGTGTGCTA 59.094 47.619 0.00 0.00 0.00 3.49
2223 2294 2.304470 TGCTAATGGGAGTGTGTGCTAA 59.696 45.455 0.00 0.00 0.00 3.09
2224 2295 3.054434 TGCTAATGGGAGTGTGTGCTAAT 60.054 43.478 0.00 0.00 0.00 1.73
2225 2296 3.561725 GCTAATGGGAGTGTGTGCTAATC 59.438 47.826 0.00 0.00 0.00 1.75
2226 2297 3.719268 AATGGGAGTGTGTGCTAATCA 57.281 42.857 0.00 0.00 0.00 2.57
2227 2298 3.719268 ATGGGAGTGTGTGCTAATCAA 57.281 42.857 0.00 0.00 0.00 2.57
2228 2299 2.778299 TGGGAGTGTGTGCTAATCAAC 58.222 47.619 0.00 0.00 0.00 3.18
2229 2300 2.371841 TGGGAGTGTGTGCTAATCAACT 59.628 45.455 0.00 0.00 0.00 3.16
2230 2301 3.003480 GGGAGTGTGTGCTAATCAACTC 58.997 50.000 0.00 0.00 0.00 3.01
2231 2302 3.003480 GGAGTGTGTGCTAATCAACTCC 58.997 50.000 4.06 4.06 36.22 3.85
2232 2303 3.557054 GGAGTGTGTGCTAATCAACTCCA 60.557 47.826 13.42 0.00 41.38 3.86
2233 2304 4.065088 GAGTGTGTGCTAATCAACTCCAA 58.935 43.478 0.00 0.00 0.00 3.53
2234 2305 4.460263 AGTGTGTGCTAATCAACTCCAAA 58.540 39.130 0.00 0.00 0.00 3.28
2235 2306 5.072741 AGTGTGTGCTAATCAACTCCAAAT 58.927 37.500 0.00 0.00 0.00 2.32
2236 2307 6.237901 AGTGTGTGCTAATCAACTCCAAATA 58.762 36.000 0.00 0.00 0.00 1.40
2237 2308 6.886459 AGTGTGTGCTAATCAACTCCAAATAT 59.114 34.615 0.00 0.00 0.00 1.28
2238 2309 6.968904 GTGTGTGCTAATCAACTCCAAATATG 59.031 38.462 0.00 0.00 0.00 1.78
2239 2310 5.973565 GTGTGCTAATCAACTCCAAATATGC 59.026 40.000 0.00 0.00 0.00 3.14
2240 2311 5.887598 TGTGCTAATCAACTCCAAATATGCT 59.112 36.000 0.00 0.00 0.00 3.79
2241 2312 7.012327 GTGTGCTAATCAACTCCAAATATGCTA 59.988 37.037 0.00 0.00 0.00 3.49
2242 2313 7.555914 TGTGCTAATCAACTCCAAATATGCTAA 59.444 33.333 0.00 0.00 0.00 3.09
2243 2314 8.571336 GTGCTAATCAACTCCAAATATGCTAAT 58.429 33.333 0.00 0.00 0.00 1.73
2244 2315 8.570488 TGCTAATCAACTCCAAATATGCTAATG 58.430 33.333 0.00 0.00 0.00 1.90
2245 2316 8.025445 GCTAATCAACTCCAAATATGCTAATGG 58.975 37.037 0.00 0.00 0.00 3.16
2509 2822 9.233232 CAACAACTGGTTAGTAACTTTGAAATC 57.767 33.333 20.13 3.38 37.72 2.17
2710 3024 7.303261 GTCTTTTTAATTTAGCTTACAGCCGT 58.697 34.615 0.00 0.00 43.77 5.68
2845 3159 2.740714 CTTAACCGCGGCAGCTGTC 61.741 63.158 28.58 12.92 39.93 3.51
2961 3275 9.379770 TCATAGGTAAGATCCTATCAATTGTCA 57.620 33.333 5.13 0.00 45.67 3.58
2965 3279 8.598041 AGGTAAGATCCTATCAATTGTCATACC 58.402 37.037 13.77 13.77 35.87 2.73
2966 3280 8.375506 GGTAAGATCCTATCAATTGTCATACCA 58.624 37.037 15.53 0.00 0.00 3.25
2967 3281 9.429359 GTAAGATCCTATCAATTGTCATACCAG 57.571 37.037 5.13 0.00 0.00 4.00
2968 3282 7.013823 AGATCCTATCAATTGTCATACCAGG 57.986 40.000 5.13 3.45 0.00 4.45
2969 3283 4.973168 TCCTATCAATTGTCATACCAGGC 58.027 43.478 5.13 0.00 0.00 4.85
2970 3284 4.074970 CCTATCAATTGTCATACCAGGCC 58.925 47.826 5.13 0.00 0.00 5.19
2971 3285 2.036958 TCAATTGTCATACCAGGCCG 57.963 50.000 5.13 0.00 0.00 6.13
2972 3286 1.024271 CAATTGTCATACCAGGCCGG 58.976 55.000 11.48 11.48 42.50 6.13
2973 3287 0.106719 AATTGTCATACCAGGCCGGG 60.107 55.000 21.67 21.67 40.22 5.73
2974 3288 1.994885 ATTGTCATACCAGGCCGGGG 61.995 60.000 26.70 20.23 40.22 5.73
2975 3289 3.873812 GTCATACCAGGCCGGGGG 61.874 72.222 26.70 17.58 40.22 5.40
2976 3290 4.424867 TCATACCAGGCCGGGGGT 62.425 66.667 26.70 22.26 40.22 4.95
2977 3291 3.873812 CATACCAGGCCGGGGGTC 61.874 72.222 26.70 0.00 40.22 4.46
2990 3304 3.029083 GGGGTCCTCCTCCATTTCT 57.971 57.895 0.00 0.00 35.33 2.52
2991 3305 2.191981 GGGGTCCTCCTCCATTTCTA 57.808 55.000 0.00 0.00 35.33 2.10
2992 3306 2.488836 GGGGTCCTCCTCCATTTCTAA 58.511 52.381 0.00 0.00 35.33 2.10
2993 3307 2.439880 GGGGTCCTCCTCCATTTCTAAG 59.560 54.545 0.00 0.00 35.33 2.18
2994 3308 3.385115 GGGTCCTCCTCCATTTCTAAGA 58.615 50.000 0.00 0.00 0.00 2.10
2995 3309 3.780850 GGGTCCTCCTCCATTTCTAAGAA 59.219 47.826 0.00 0.00 0.00 2.52
2996 3310 4.227527 GGGTCCTCCTCCATTTCTAAGAAA 59.772 45.833 0.00 0.00 0.00 2.52
2997 3311 5.281037 GGGTCCTCCTCCATTTCTAAGAAAA 60.281 44.000 0.00 0.00 0.00 2.29
2998 3312 6.246163 GGTCCTCCTCCATTTCTAAGAAAAA 58.754 40.000 0.00 0.00 0.00 1.94
3275 3589 6.092748 GTGATGCCTCACGATACAAAATTTT 58.907 36.000 6.36 0.00 42.24 1.82
3554 3868 6.883756 TCATCATACAAAAGACAGGTATGCAA 59.116 34.615 0.00 0.00 42.44 4.08
3695 4010 7.331193 GGGTCTTATTATACACTGATTTAGGCG 59.669 40.741 0.00 0.00 0.00 5.52
3925 4248 4.497300 TCGTCTTTATTTACACCCTTCCG 58.503 43.478 0.00 0.00 0.00 4.30
4500 4823 7.695820 TGTTTGTAGTATTAACTGTTTGCGTT 58.304 30.769 0.00 0.00 36.36 4.84
4731 5054 4.739716 AGCGCAACAAACTCAAATGTAAAG 59.260 37.500 11.47 0.00 0.00 1.85
4890 5213 3.056035 CAGTTGGTACCTCCTGGAACTAC 60.056 52.174 14.36 0.01 37.07 2.73
4950 5273 5.163953 CGCTCATGTTTCTGAGTTATTTCGT 60.164 40.000 3.31 0.00 43.75 3.85
5031 5354 3.979347 AGATTTCTACCAGGGCATCATCT 59.021 43.478 0.00 0.00 0.00 2.90
5121 5444 3.589988 AGCTCACCTGACTTTTACATCG 58.410 45.455 0.00 0.00 0.00 3.84
5778 6103 5.097742 TCATTTCTCACGTGGGAACATAT 57.902 39.130 29.95 18.19 46.14 1.78
5997 6326 3.431415 TGCTAGTGCTTCAGACCTTCTA 58.569 45.455 0.00 0.00 40.48 2.10
6120 6449 6.589830 AACATATCATCTGTCGTACTTTGC 57.410 37.500 0.00 0.00 0.00 3.68
6173 6502 2.863704 GCTTTGGAAGTTGCATGTCACC 60.864 50.000 0.00 0.00 0.00 4.02
6194 6523 4.455877 ACCCGATTCTTTCTGACAACATTC 59.544 41.667 0.00 0.00 0.00 2.67
6319 6649 7.281100 CCTCTCAAATCTGTTAAAGGTATGTCC 59.719 40.741 0.00 0.00 0.00 4.02
6332 6662 2.432146 GGTATGTCCTGTGCTCAGATCA 59.568 50.000 17.19 14.40 43.76 2.92
6345 6675 3.554752 GCTCAGATCACAGCCCTATTCTC 60.555 52.174 4.87 0.00 0.00 2.87
6347 6677 3.894427 TCAGATCACAGCCCTATTCTCTC 59.106 47.826 0.00 0.00 0.00 3.20
6493 6823 1.800586 CGTGACATCTTGAACAGTGGG 59.199 52.381 0.00 0.00 0.00 4.61
6565 6895 1.743623 CCCGAACTACCAATGCGCA 60.744 57.895 14.96 14.96 0.00 6.09
6598 6928 1.236616 TGAACTGGCAAGCGGATGTG 61.237 55.000 0.00 0.00 0.00 3.21
6689 7019 2.181777 CTAACGAGCTCGGCTGCA 59.818 61.111 36.93 17.11 44.95 4.41
6887 7217 1.134220 TGTTCCCAATCATACGGAGCC 60.134 52.381 0.00 0.00 0.00 4.70
7011 7342 3.489785 GTCCGCTATGGTAAATGAAGACG 59.510 47.826 0.00 0.00 39.52 4.18
7035 7366 4.578516 TGTCATTTTTCGTTCTCCACACAT 59.421 37.500 0.00 0.00 0.00 3.21
7040 7371 3.326836 TTCGTTCTCCACACATATGCA 57.673 42.857 1.58 0.00 0.00 3.96
7142 7474 3.499918 CCGATTCTCCATCTACAAATGCC 59.500 47.826 0.00 0.00 0.00 4.40
7143 7475 4.384056 CGATTCTCCATCTACAAATGCCT 58.616 43.478 0.00 0.00 0.00 4.75
7147 7479 1.215173 TCCATCTACAAATGCCTGGGG 59.785 52.381 0.00 0.00 0.00 4.96
7149 7481 2.624029 CCATCTACAAATGCCTGGGGTT 60.624 50.000 0.00 0.00 0.00 4.11
7151 7483 4.277476 CATCTACAAATGCCTGGGGTTAA 58.723 43.478 0.00 0.00 0.00 2.01
7153 7485 1.639722 ACAAATGCCTGGGGTTAACC 58.360 50.000 16.85 16.85 39.11 2.85
7154 7486 1.133009 ACAAATGCCTGGGGTTAACCA 60.133 47.619 25.71 5.80 42.91 3.67
7155 7487 1.275010 CAAATGCCTGGGGTTAACCAC 59.725 52.381 25.71 23.33 42.91 4.16
7161 7493 2.673258 CCTGGGGTTAACCACTTTGTT 58.327 47.619 26.91 0.00 41.04 2.83
7179 7511 7.740346 CACTTTGTTGTACGATTCTATCAACAC 59.260 37.037 8.23 0.00 44.71 3.32
7185 7517 7.755582 TGTACGATTCTATCAACACAGAATG 57.244 36.000 1.76 0.00 40.68 2.67
7186 7518 7.543756 TGTACGATTCTATCAACACAGAATGA 58.456 34.615 1.76 0.00 40.68 2.57
7187 7519 8.197439 TGTACGATTCTATCAACACAGAATGAT 58.803 33.333 1.76 0.00 40.68 2.45
7188 7520 7.706281 ACGATTCTATCAACACAGAATGATC 57.294 36.000 1.76 0.00 40.68 2.92
7189 7521 7.495901 ACGATTCTATCAACACAGAATGATCT 58.504 34.615 1.76 0.00 40.68 2.75
7190 7522 7.984050 ACGATTCTATCAACACAGAATGATCTT 59.016 33.333 1.76 0.00 40.68 2.40
7191 7523 8.824781 CGATTCTATCAACACAGAATGATCTTT 58.175 33.333 1.76 0.00 40.68 2.52
7199 7531 9.288576 TCAACACAGAATGATCTTTTTACATCT 57.711 29.630 0.00 0.00 39.69 2.90
7200 7532 9.903682 CAACACAGAATGATCTTTTTACATCTT 57.096 29.630 0.00 0.00 39.69 2.40
7201 7533 9.903682 AACACAGAATGATCTTTTTACATCTTG 57.096 29.630 0.00 0.00 39.69 3.02
7202 7534 9.071276 ACACAGAATGATCTTTTTACATCTTGT 57.929 29.630 0.00 0.00 39.69 3.16
7220 7552 9.950496 ACATCTTGTACATATGTTTTCTCTCTT 57.050 29.630 14.77 0.00 29.68 2.85
7234 7566 9.823647 TGTTTTCTCTCTTCTATAAAGCTATGG 57.176 33.333 0.00 0.00 0.00 2.74
7235 7567 9.825109 GTTTTCTCTCTTCTATAAAGCTATGGT 57.175 33.333 0.00 0.00 0.00 3.55
7239 7571 8.744652 TCTCTCTTCTATAAAGCTATGGTATGC 58.255 37.037 0.00 0.00 0.00 3.14
7240 7572 8.657387 TCTCTTCTATAAAGCTATGGTATGCT 57.343 34.615 0.00 0.00 41.82 3.79
7247 7579 1.949525 AGCTATGGTATGCTTTTGGCG 59.050 47.619 0.00 0.00 45.43 5.69
7248 7580 1.676006 GCTATGGTATGCTTTTGGCGT 59.324 47.619 0.00 0.00 45.43 5.68
7249 7581 2.875933 GCTATGGTATGCTTTTGGCGTA 59.124 45.455 0.00 0.00 45.43 4.42
7254 7586 2.032680 TATGCTTTTGGCGTACCCTC 57.967 50.000 2.61 0.00 45.43 4.30
7255 7587 1.024579 ATGCTTTTGGCGTACCCTCG 61.025 55.000 2.61 0.00 45.43 4.63
7256 7588 1.375013 GCTTTTGGCGTACCCTCGA 60.375 57.895 2.61 0.00 33.59 4.04
7257 7589 0.952010 GCTTTTGGCGTACCCTCGAA 60.952 55.000 2.61 0.00 33.59 3.71
7258 7590 1.515081 CTTTTGGCGTACCCTCGAAA 58.485 50.000 2.61 0.00 33.59 3.46
7259 7591 1.874872 CTTTTGGCGTACCCTCGAAAA 59.125 47.619 2.61 1.28 33.59 2.29
7260 7592 1.964552 TTTGGCGTACCCTCGAAAAA 58.035 45.000 2.61 0.00 33.59 1.94
7308 7640 2.860972 GAAGCGAGCTCCCTGGTTCC 62.861 65.000 16.57 4.28 34.85 3.62
7309 7641 3.394836 GCGAGCTCCCTGGTTCCT 61.395 66.667 8.47 0.00 0.00 3.36
7312 7644 0.902531 CGAGCTCCCTGGTTCCTTTA 59.097 55.000 8.47 0.00 0.00 1.85
7315 7647 3.105283 GAGCTCCCTGGTTCCTTTACTA 58.895 50.000 0.87 0.00 0.00 1.82
7321 7653 5.347124 TCCCTGGTTCCTTTACTAAGATCA 58.653 41.667 0.00 0.00 32.92 2.92
7328 7660 7.229907 TGGTTCCTTTACTAAGATCAAAACCAC 59.770 37.037 0.00 0.00 32.92 4.16
7329 7661 7.229907 GGTTCCTTTACTAAGATCAAAACCACA 59.770 37.037 0.00 0.00 32.92 4.17
7330 7662 8.626526 GTTCCTTTACTAAGATCAAAACCACAA 58.373 33.333 0.00 0.00 32.92 3.33
7332 7664 8.792633 TCCTTTACTAAGATCAAAACCACAATG 58.207 33.333 0.00 0.00 32.92 2.82
7333 7665 8.576442 CCTTTACTAAGATCAAAACCACAATGT 58.424 33.333 0.00 0.00 32.92 2.71
7335 7667 6.241207 ACTAAGATCAAAACCACAATGTCG 57.759 37.500 0.00 0.00 0.00 4.35
7336 7668 3.559238 AGATCAAAACCACAATGTCGC 57.441 42.857 0.00 0.00 0.00 5.19
7337 7669 2.884012 AGATCAAAACCACAATGTCGCA 59.116 40.909 0.00 0.00 0.00 5.10
7338 7670 3.317711 AGATCAAAACCACAATGTCGCAA 59.682 39.130 0.00 0.00 0.00 4.85
7339 7671 3.724508 TCAAAACCACAATGTCGCAAT 57.275 38.095 0.00 0.00 0.00 3.56
7341 7673 5.188327 TCAAAACCACAATGTCGCAATAA 57.812 34.783 0.00 0.00 0.00 1.40
7342 7674 5.592054 TCAAAACCACAATGTCGCAATAAA 58.408 33.333 0.00 0.00 0.00 1.40
7343 7675 6.042777 TCAAAACCACAATGTCGCAATAAAA 58.957 32.000 0.00 0.00 0.00 1.52
7385 7717 4.248691 AGGCTGCAAAATTCAAAGAGAC 57.751 40.909 0.50 0.00 0.00 3.36
7392 7724 6.964908 TGCAAAATTCAAAGAGACACGATAA 58.035 32.000 0.00 0.00 0.00 1.75
7397 7729 5.817616 TTCAAAGAGACACGATAACGAAC 57.182 39.130 0.00 0.00 42.66 3.95
7405 7737 3.708890 ACACGATAACGAACACACAGAA 58.291 40.909 0.00 0.00 42.66 3.02
7420 7752 1.383248 AGAACTAGGGCAGCCGGAT 60.383 57.895 5.05 0.00 0.00 4.18
7462 7799 0.179059 TCATGCCGGCGTCATAACAT 60.179 50.000 20.90 1.07 0.00 2.71
7465 7802 2.251642 GCCGGCGTCATAACATCCC 61.252 63.158 12.58 0.00 0.00 3.85
7472 7809 3.537580 GCGTCATAACATCCCAAACCTA 58.462 45.455 0.00 0.00 0.00 3.08
7473 7810 3.560068 GCGTCATAACATCCCAAACCTAG 59.440 47.826 0.00 0.00 0.00 3.02
7474 7811 4.127171 CGTCATAACATCCCAAACCTAGG 58.873 47.826 7.41 7.41 0.00 3.02
7475 7812 3.883489 GTCATAACATCCCAAACCTAGGC 59.117 47.826 9.30 0.00 0.00 3.93
7476 7813 3.525609 TCATAACATCCCAAACCTAGGCA 59.474 43.478 9.30 0.00 0.00 4.75
7477 7814 2.990740 AACATCCCAAACCTAGGCAA 57.009 45.000 9.30 0.00 0.00 4.52
7478 7815 3.473113 AACATCCCAAACCTAGGCAAT 57.527 42.857 9.30 0.00 0.00 3.56
7479 7816 3.018423 ACATCCCAAACCTAGGCAATC 57.982 47.619 9.30 0.00 0.00 2.67
7480 7817 2.311542 ACATCCCAAACCTAGGCAATCA 59.688 45.455 9.30 0.00 0.00 2.57
7481 7818 3.052642 ACATCCCAAACCTAGGCAATCAT 60.053 43.478 9.30 0.00 0.00 2.45
7482 7819 3.297134 TCCCAAACCTAGGCAATCATC 57.703 47.619 9.30 0.00 0.00 2.92
7483 7820 2.091885 TCCCAAACCTAGGCAATCATCC 60.092 50.000 9.30 0.00 0.00 3.51
7484 7821 2.358090 CCCAAACCTAGGCAATCATCCA 60.358 50.000 9.30 0.00 0.00 3.41
7485 7822 2.954318 CCAAACCTAGGCAATCATCCAG 59.046 50.000 9.30 0.00 0.00 3.86
7486 7823 2.355010 AACCTAGGCAATCATCCAGC 57.645 50.000 9.30 0.00 0.00 4.85
7487 7824 1.516110 ACCTAGGCAATCATCCAGCT 58.484 50.000 9.30 0.00 0.00 4.24
7488 7825 1.419387 ACCTAGGCAATCATCCAGCTC 59.581 52.381 9.30 0.00 0.00 4.09
7489 7826 1.271271 CCTAGGCAATCATCCAGCTCC 60.271 57.143 0.00 0.00 0.00 4.70
7490 7827 1.419012 CTAGGCAATCATCCAGCTCCA 59.581 52.381 0.00 0.00 0.00 3.86
7491 7828 0.183014 AGGCAATCATCCAGCTCCAG 59.817 55.000 0.00 0.00 0.00 3.86
7492 7829 0.822532 GGCAATCATCCAGCTCCAGG 60.823 60.000 0.00 0.00 0.00 4.45
7493 7830 0.106819 GCAATCATCCAGCTCCAGGT 60.107 55.000 0.00 0.00 0.00 4.00
7494 7831 1.141657 GCAATCATCCAGCTCCAGGTA 59.858 52.381 0.00 0.00 0.00 3.08
7495 7832 2.224719 GCAATCATCCAGCTCCAGGTAT 60.225 50.000 0.00 0.00 0.00 2.73
7496 7833 3.672808 CAATCATCCAGCTCCAGGTATC 58.327 50.000 0.00 0.00 0.00 2.24
7497 7834 2.477104 TCATCCAGCTCCAGGTATCA 57.523 50.000 0.00 0.00 0.00 2.15
7498 7835 2.042464 TCATCCAGCTCCAGGTATCAC 58.958 52.381 0.00 0.00 0.00 3.06
7499 7836 1.071385 CATCCAGCTCCAGGTATCACC 59.929 57.143 0.00 0.00 38.99 4.02
7500 7837 0.042581 TCCAGCTCCAGGTATCACCA 59.957 55.000 0.00 0.00 41.95 4.17
7501 7838 0.911769 CCAGCTCCAGGTATCACCAA 59.088 55.000 0.00 0.00 41.95 3.67
7502 7839 1.134280 CCAGCTCCAGGTATCACCAAG 60.134 57.143 0.00 0.00 41.95 3.61
7503 7840 1.134280 CAGCTCCAGGTATCACCAAGG 60.134 57.143 0.00 0.00 41.95 3.61
7504 7841 1.204146 GCTCCAGGTATCACCAAGGA 58.796 55.000 8.64 8.64 41.95 3.36
7506 7843 2.642171 TCCAGGTATCACCAAGGAGT 57.358 50.000 5.68 0.00 41.95 3.85
7507 7844 2.915869 TCCAGGTATCACCAAGGAGTT 58.084 47.619 5.68 0.00 41.95 3.01
7508 7845 2.571653 TCCAGGTATCACCAAGGAGTTG 59.428 50.000 5.68 0.00 41.95 3.16
7509 7846 2.305927 CCAGGTATCACCAAGGAGTTGT 59.694 50.000 0.00 0.00 41.95 3.32
7510 7847 3.244911 CCAGGTATCACCAAGGAGTTGTT 60.245 47.826 0.00 0.00 41.95 2.83
7511 7848 4.019681 CCAGGTATCACCAAGGAGTTGTTA 60.020 45.833 0.00 0.00 41.95 2.41
7512 7849 5.339200 CCAGGTATCACCAAGGAGTTGTTAT 60.339 44.000 0.00 0.00 41.95 1.89
7513 7850 5.817816 CAGGTATCACCAAGGAGTTGTTATC 59.182 44.000 0.00 0.00 41.95 1.75
7514 7851 4.809426 GGTATCACCAAGGAGTTGTTATCG 59.191 45.833 0.00 0.00 38.42 2.92
7515 7852 3.328382 TCACCAAGGAGTTGTTATCGG 57.672 47.619 0.00 0.00 30.95 4.18
7516 7853 2.635915 TCACCAAGGAGTTGTTATCGGT 59.364 45.455 0.00 0.00 30.95 4.69
7517 7854 2.742053 CACCAAGGAGTTGTTATCGGTG 59.258 50.000 0.00 0.00 30.95 4.94
7518 7855 2.635915 ACCAAGGAGTTGTTATCGGTGA 59.364 45.455 0.00 0.00 30.95 4.02
7519 7856 3.000727 CCAAGGAGTTGTTATCGGTGAC 58.999 50.000 0.00 0.00 30.95 3.67
7520 7857 3.306780 CCAAGGAGTTGTTATCGGTGACT 60.307 47.826 0.00 0.00 30.95 3.41
7521 7858 3.594603 AGGAGTTGTTATCGGTGACTG 57.405 47.619 0.00 0.00 0.00 3.51
7522 7859 2.000447 GGAGTTGTTATCGGTGACTGC 59.000 52.381 0.00 0.00 0.00 4.40
7523 7860 2.611971 GGAGTTGTTATCGGTGACTGCA 60.612 50.000 0.00 0.00 0.00 4.41
7524 7861 3.262420 GAGTTGTTATCGGTGACTGCAT 58.738 45.455 0.00 0.00 0.00 3.96
7525 7862 3.674997 AGTTGTTATCGGTGACTGCATT 58.325 40.909 0.00 0.00 0.00 3.56
7526 7863 4.827692 AGTTGTTATCGGTGACTGCATTA 58.172 39.130 0.00 0.00 0.00 1.90
7527 7864 4.870426 AGTTGTTATCGGTGACTGCATTAG 59.130 41.667 0.00 0.00 0.00 1.73
7528 7865 3.194861 TGTTATCGGTGACTGCATTAGC 58.805 45.455 0.00 0.00 42.57 3.09
7540 7877 2.688364 GCATTAGCACGCCTAATTCC 57.312 50.000 6.28 0.00 42.69 3.01
7541 7878 1.946768 GCATTAGCACGCCTAATTCCA 59.053 47.619 6.28 0.00 42.69 3.53
7542 7879 2.031682 GCATTAGCACGCCTAATTCCAG 60.032 50.000 6.28 0.00 42.69 3.86
7543 7880 1.663695 TTAGCACGCCTAATTCCAGC 58.336 50.000 0.00 0.00 31.17 4.85
7547 7884 2.513666 CGCCTAATTCCAGCGGCA 60.514 61.111 1.45 0.00 45.88 5.69
7548 7885 2.112198 CGCCTAATTCCAGCGGCAA 61.112 57.895 1.45 0.00 45.88 4.52
7549 7886 1.729881 GCCTAATTCCAGCGGCAAG 59.270 57.895 1.45 0.00 42.06 4.01
7550 7887 1.728490 GCCTAATTCCAGCGGCAAGG 61.728 60.000 1.45 3.69 42.06 3.61
7551 7888 0.394352 CCTAATTCCAGCGGCAAGGT 60.394 55.000 1.45 0.00 0.00 3.50
7552 7889 1.017387 CTAATTCCAGCGGCAAGGTC 58.983 55.000 1.45 0.00 0.00 3.85
7553 7890 0.618458 TAATTCCAGCGGCAAGGTCT 59.382 50.000 1.45 0.00 0.00 3.85
7554 7891 0.962356 AATTCCAGCGGCAAGGTCTG 60.962 55.000 1.45 0.00 0.00 3.51
7555 7892 1.841302 ATTCCAGCGGCAAGGTCTGA 61.841 55.000 1.45 0.00 0.00 3.27
7556 7893 2.731691 TTCCAGCGGCAAGGTCTGAC 62.732 60.000 1.45 0.00 0.00 3.51
7557 7894 2.345244 CAGCGGCAAGGTCTGACT 59.655 61.111 7.85 0.00 0.00 3.41
7558 7895 1.591703 CAGCGGCAAGGTCTGACTA 59.408 57.895 7.85 0.00 0.00 2.59
7559 7896 0.459237 CAGCGGCAAGGTCTGACTAG 60.459 60.000 7.85 0.00 0.00 2.57
7560 7897 0.612174 AGCGGCAAGGTCTGACTAGA 60.612 55.000 7.85 0.00 0.00 2.43
7561 7898 0.179124 GCGGCAAGGTCTGACTAGAG 60.179 60.000 7.85 0.00 32.48 2.43
7562 7899 1.464734 CGGCAAGGTCTGACTAGAGA 58.535 55.000 7.85 0.00 32.48 3.10
7563 7900 1.133407 CGGCAAGGTCTGACTAGAGAC 59.867 57.143 7.85 0.00 41.55 3.36
7564 7901 1.133407 GGCAAGGTCTGACTAGAGACG 59.867 57.143 7.85 0.00 42.97 4.18
7565 7902 1.813786 GCAAGGTCTGACTAGAGACGT 59.186 52.381 7.85 0.00 42.97 4.34
7566 7903 2.229302 GCAAGGTCTGACTAGAGACGTT 59.771 50.000 11.66 11.66 46.78 3.99
7567 7904 3.671164 GCAAGGTCTGACTAGAGACGTTC 60.671 52.174 13.64 7.88 45.02 3.95
7568 7905 3.706600 AGGTCTGACTAGAGACGTTCT 57.293 47.619 7.85 0.00 42.97 3.01
7569 7906 4.023726 AGGTCTGACTAGAGACGTTCTT 57.976 45.455 7.85 0.00 42.97 2.52
7570 7907 4.004982 AGGTCTGACTAGAGACGTTCTTC 58.995 47.826 7.85 0.00 42.97 2.87
7571 7908 4.004982 GGTCTGACTAGAGACGTTCTTCT 58.995 47.826 7.85 4.88 42.97 2.85
7572 7909 4.456566 GGTCTGACTAGAGACGTTCTTCTT 59.543 45.833 7.85 0.00 42.97 2.52
7573 7910 5.387279 GTCTGACTAGAGACGTTCTTCTTG 58.613 45.833 0.00 5.82 37.36 3.02
7574 7911 4.083217 TCTGACTAGAGACGTTCTTCTTGC 60.083 45.833 0.00 0.00 37.36 4.01
7575 7912 3.057456 TGACTAGAGACGTTCTTCTTGCC 60.057 47.826 0.00 0.00 37.36 4.52
7576 7913 2.891580 ACTAGAGACGTTCTTCTTGCCA 59.108 45.455 0.00 0.00 37.36 4.92
7577 7914 2.156343 AGAGACGTTCTTCTTGCCAC 57.844 50.000 0.00 0.00 29.61 5.01
7578 7915 1.412710 AGAGACGTTCTTCTTGCCACA 59.587 47.619 0.00 0.00 29.61 4.17
7579 7916 1.795286 GAGACGTTCTTCTTGCCACAG 59.205 52.381 0.00 0.00 0.00 3.66
7580 7917 0.868406 GACGTTCTTCTTGCCACAGG 59.132 55.000 0.00 0.00 0.00 4.00
7581 7918 0.180406 ACGTTCTTCTTGCCACAGGT 59.820 50.000 0.00 0.00 0.00 4.00
7582 7919 0.588252 CGTTCTTCTTGCCACAGGTG 59.412 55.000 0.00 0.00 0.00 4.00
7583 7920 1.680338 GTTCTTCTTGCCACAGGTGT 58.320 50.000 0.00 0.00 0.00 4.16
7584 7921 1.334869 GTTCTTCTTGCCACAGGTGTG 59.665 52.381 2.93 2.93 45.23 3.82
7585 7922 0.546122 TCTTCTTGCCACAGGTGTGT 59.454 50.000 9.22 0.00 44.21 3.72
7586 7923 1.765904 TCTTCTTGCCACAGGTGTGTA 59.234 47.619 9.22 0.00 44.21 2.90
7587 7924 2.171659 TCTTCTTGCCACAGGTGTGTAA 59.828 45.455 9.22 3.69 44.21 2.41
7588 7925 1.961793 TCTTGCCACAGGTGTGTAAC 58.038 50.000 9.22 0.00 44.21 2.50
7589 7926 0.586319 CTTGCCACAGGTGTGTAACG 59.414 55.000 9.22 0.00 44.21 3.18
7597 7934 3.790177 GTGTGTAACGCCCCGATC 58.210 61.111 0.00 0.00 42.76 3.69
7598 7935 1.217244 GTGTGTAACGCCCCGATCT 59.783 57.895 0.00 0.00 42.76 2.75
7599 7936 1.082117 GTGTGTAACGCCCCGATCTG 61.082 60.000 0.00 0.00 42.76 2.90
7600 7937 1.217244 GTGTAACGCCCCGATCTGT 59.783 57.895 0.00 0.00 0.00 3.41
7601 7938 1.082117 GTGTAACGCCCCGATCTGTG 61.082 60.000 0.00 0.00 0.00 3.66
7602 7939 1.217244 GTAACGCCCCGATCTGTGT 59.783 57.895 0.00 0.00 0.00 3.72
7603 7940 0.804933 GTAACGCCCCGATCTGTGTC 60.805 60.000 0.00 0.00 0.00 3.67
7604 7941 2.274232 TAACGCCCCGATCTGTGTCG 62.274 60.000 0.00 0.00 41.13 4.35
7606 7943 4.451150 GCCCCGATCTGTGTCGCA 62.451 66.667 0.00 0.00 40.17 5.10
7607 7944 2.202797 CCCCGATCTGTGTCGCAG 60.203 66.667 7.09 7.09 46.34 5.18
7608 7945 2.202797 CCCGATCTGTGTCGCAGG 60.203 66.667 13.36 0.00 45.08 4.85
7609 7946 2.887568 CCGATCTGTGTCGCAGGC 60.888 66.667 13.36 5.50 45.08 4.85
7610 7947 3.250323 CGATCTGTGTCGCAGGCG 61.250 66.667 13.36 7.46 45.08 5.52
7611 7948 2.181777 GATCTGTGTCGCAGGCGA 59.818 61.111 12.94 12.94 45.08 5.54
7619 7956 2.360726 TCGCAGGCGACCAGAGTA 60.361 61.111 12.94 0.00 44.01 2.59
7620 7957 2.103143 CGCAGGCGACCAGAGTAG 59.897 66.667 8.15 0.00 42.83 2.57
7621 7958 2.496817 GCAGGCGACCAGAGTAGG 59.503 66.667 0.00 0.00 0.00 3.18
7622 7959 2.496817 CAGGCGACCAGAGTAGGC 59.503 66.667 0.00 0.00 43.32 3.93
7623 7960 2.037367 AGGCGACCAGAGTAGGCA 59.963 61.111 3.01 0.00 45.06 4.75
7624 7961 2.055042 AGGCGACCAGAGTAGGCAG 61.055 63.158 3.01 0.00 45.06 4.85
7625 7962 2.052690 GGCGACCAGAGTAGGCAGA 61.053 63.158 0.00 0.00 42.66 4.26
7626 7963 1.435515 GCGACCAGAGTAGGCAGAG 59.564 63.158 0.00 0.00 0.00 3.35
7627 7964 2.010582 GCGACCAGAGTAGGCAGAGG 62.011 65.000 0.00 0.00 0.00 3.69
7628 7965 1.388065 CGACCAGAGTAGGCAGAGGG 61.388 65.000 0.00 0.00 0.00 4.30
7629 7966 1.002274 ACCAGAGTAGGCAGAGGGG 59.998 63.158 0.00 0.00 0.00 4.79
7630 7967 1.764054 CCAGAGTAGGCAGAGGGGG 60.764 68.421 0.00 0.00 0.00 5.40
7631 7968 1.311403 CAGAGTAGGCAGAGGGGGA 59.689 63.158 0.00 0.00 0.00 4.81
7632 7969 0.105246 CAGAGTAGGCAGAGGGGGAT 60.105 60.000 0.00 0.00 0.00 3.85
7633 7970 0.189822 AGAGTAGGCAGAGGGGGATC 59.810 60.000 0.00 0.00 0.00 3.36
7634 7971 0.189822 GAGTAGGCAGAGGGGGATCT 59.810 60.000 0.00 0.00 0.00 2.75
7636 7973 1.124477 GTAGGCAGAGGGGGATCTGG 61.124 65.000 5.92 0.00 45.66 3.86
7637 7974 2.332258 TAGGCAGAGGGGGATCTGGG 62.332 65.000 5.92 0.00 45.66 4.45
7638 7975 2.040464 GCAGAGGGGGATCTGGGA 60.040 66.667 5.92 0.00 45.66 4.37
7639 7976 1.694169 GCAGAGGGGGATCTGGGAA 60.694 63.158 5.92 0.00 45.66 3.97
7640 7977 1.281925 GCAGAGGGGGATCTGGGAAA 61.282 60.000 5.92 0.00 45.66 3.13
7641 7978 0.842635 CAGAGGGGGATCTGGGAAAG 59.157 60.000 0.00 0.00 42.52 2.62
7642 7979 0.327964 AGAGGGGGATCTGGGAAAGG 60.328 60.000 0.00 0.00 0.00 3.11
7643 7980 1.309102 AGGGGGATCTGGGAAAGGG 60.309 63.158 0.00 0.00 0.00 3.95
7644 7981 2.395353 GGGGGATCTGGGAAAGGGG 61.395 68.421 0.00 0.00 0.00 4.79
7645 7982 2.395353 GGGGATCTGGGAAAGGGGG 61.395 68.421 0.00 0.00 0.00 5.40
7646 7983 1.308746 GGGATCTGGGAAAGGGGGA 60.309 63.158 0.00 0.00 0.00 4.81
7647 7984 0.702706 GGGATCTGGGAAAGGGGGAT 60.703 60.000 0.00 0.00 0.00 3.85
7648 7985 0.480252 GGATCTGGGAAAGGGGGATG 59.520 60.000 0.00 0.00 0.00 3.51
7649 7986 1.522900 GATCTGGGAAAGGGGGATGA 58.477 55.000 0.00 0.00 0.00 2.92
7650 7987 1.423161 GATCTGGGAAAGGGGGATGAG 59.577 57.143 0.00 0.00 0.00 2.90
7651 7988 0.421495 TCTGGGAAAGGGGGATGAGA 59.579 55.000 0.00 0.00 0.00 3.27
7652 7989 1.011293 TCTGGGAAAGGGGGATGAGAT 59.989 52.381 0.00 0.00 0.00 2.75
7653 7990 2.252676 TCTGGGAAAGGGGGATGAGATA 59.747 50.000 0.00 0.00 0.00 1.98
7654 7991 3.056080 CTGGGAAAGGGGGATGAGATAA 58.944 50.000 0.00 0.00 0.00 1.75
7655 7992 3.463329 CTGGGAAAGGGGGATGAGATAAA 59.537 47.826 0.00 0.00 0.00 1.40
7656 7993 3.204382 TGGGAAAGGGGGATGAGATAAAC 59.796 47.826 0.00 0.00 0.00 2.01
7657 7994 3.463704 GGGAAAGGGGGATGAGATAAACT 59.536 47.826 0.00 0.00 0.00 2.66
7658 7995 4.079154 GGGAAAGGGGGATGAGATAAACTT 60.079 45.833 0.00 0.00 0.00 2.66
7659 7996 4.889995 GGAAAGGGGGATGAGATAAACTTG 59.110 45.833 0.00 0.00 0.00 3.16
7660 7997 4.526438 AAGGGGGATGAGATAAACTTGG 57.474 45.455 0.00 0.00 0.00 3.61
7661 7998 3.747852 AGGGGGATGAGATAAACTTGGA 58.252 45.455 0.00 0.00 0.00 3.53
7662 7999 3.718956 AGGGGGATGAGATAAACTTGGAG 59.281 47.826 0.00 0.00 0.00 3.86
7663 8000 3.716872 GGGGGATGAGATAAACTTGGAGA 59.283 47.826 0.00 0.00 0.00 3.71
7664 8001 4.166144 GGGGGATGAGATAAACTTGGAGAA 59.834 45.833 0.00 0.00 0.00 2.87
7665 8002 5.372373 GGGGATGAGATAAACTTGGAGAAG 58.628 45.833 0.00 0.00 35.07 2.85
7666 8003 5.372373 GGGATGAGATAAACTTGGAGAAGG 58.628 45.833 0.00 0.00 32.95 3.46
7667 8004 5.372373 GGATGAGATAAACTTGGAGAAGGG 58.628 45.833 0.00 0.00 32.95 3.95
7668 8005 4.844349 TGAGATAAACTTGGAGAAGGGG 57.156 45.455 0.00 0.00 32.95 4.79
7669 8006 4.435137 TGAGATAAACTTGGAGAAGGGGA 58.565 43.478 0.00 0.00 32.95 4.81
7670 8007 5.039645 TGAGATAAACTTGGAGAAGGGGAT 58.960 41.667 0.00 0.00 32.95 3.85
7671 8008 5.104360 TGAGATAAACTTGGAGAAGGGGATG 60.104 44.000 0.00 0.00 32.95 3.51
7672 8009 5.039645 AGATAAACTTGGAGAAGGGGATGA 58.960 41.667 0.00 0.00 32.95 2.92
7673 8010 3.728385 AAACTTGGAGAAGGGGATGAG 57.272 47.619 0.00 0.00 32.95 2.90
7674 8011 0.915364 ACTTGGAGAAGGGGATGAGC 59.085 55.000 0.00 0.00 32.95 4.26
7675 8012 0.914644 CTTGGAGAAGGGGATGAGCA 59.085 55.000 0.00 0.00 0.00 4.26
7676 8013 0.914644 TTGGAGAAGGGGATGAGCAG 59.085 55.000 0.00 0.00 0.00 4.24
7677 8014 0.043183 TGGAGAAGGGGATGAGCAGA 59.957 55.000 0.00 0.00 0.00 4.26
7678 8015 0.758123 GGAGAAGGGGATGAGCAGAG 59.242 60.000 0.00 0.00 0.00 3.35
7679 8016 0.758123 GAGAAGGGGATGAGCAGAGG 59.242 60.000 0.00 0.00 0.00 3.69
7680 8017 0.341258 AGAAGGGGATGAGCAGAGGA 59.659 55.000 0.00 0.00 0.00 3.71
7681 8018 0.758123 GAAGGGGATGAGCAGAGGAG 59.242 60.000 0.00 0.00 0.00 3.69
7682 8019 0.341258 AAGGGGATGAGCAGAGGAGA 59.659 55.000 0.00 0.00 0.00 3.71
7683 8020 0.105555 AGGGGATGAGCAGAGGAGAG 60.106 60.000 0.00 0.00 0.00 3.20
7684 8021 0.105760 GGGGATGAGCAGAGGAGAGA 60.106 60.000 0.00 0.00 0.00 3.10
7685 8022 1.690845 GGGGATGAGCAGAGGAGAGAA 60.691 57.143 0.00 0.00 0.00 2.87
7686 8023 1.412343 GGGATGAGCAGAGGAGAGAAC 59.588 57.143 0.00 0.00 0.00 3.01
7687 8024 2.106566 GGATGAGCAGAGGAGAGAACA 58.893 52.381 0.00 0.00 0.00 3.18
7688 8025 2.101249 GGATGAGCAGAGGAGAGAACAG 59.899 54.545 0.00 0.00 0.00 3.16
7689 8026 2.593925 TGAGCAGAGGAGAGAACAGA 57.406 50.000 0.00 0.00 0.00 3.41
7690 8027 2.445427 TGAGCAGAGGAGAGAACAGAG 58.555 52.381 0.00 0.00 0.00 3.35
7691 8028 1.750778 GAGCAGAGGAGAGAACAGAGG 59.249 57.143 0.00 0.00 0.00 3.69
7692 8029 1.357420 AGCAGAGGAGAGAACAGAGGA 59.643 52.381 0.00 0.00 0.00 3.71
7693 8030 1.750778 GCAGAGGAGAGAACAGAGGAG 59.249 57.143 0.00 0.00 0.00 3.69
7694 8031 2.378038 CAGAGGAGAGAACAGAGGAGG 58.622 57.143 0.00 0.00 0.00 4.30
7695 8032 1.287739 AGAGGAGAGAACAGAGGAGGG 59.712 57.143 0.00 0.00 0.00 4.30
7696 8033 0.338120 AGGAGAGAACAGAGGAGGGG 59.662 60.000 0.00 0.00 0.00 4.79
7697 8034 0.336737 GGAGAGAACAGAGGAGGGGA 59.663 60.000 0.00 0.00 0.00 4.81
7698 8035 1.273324 GGAGAGAACAGAGGAGGGGAA 60.273 57.143 0.00 0.00 0.00 3.97
7699 8036 2.628290 GGAGAGAACAGAGGAGGGGAAT 60.628 54.545 0.00 0.00 0.00 3.01
7700 8037 3.374318 GGAGAGAACAGAGGAGGGGAATA 60.374 52.174 0.00 0.00 0.00 1.75
7701 8038 3.895041 GAGAGAACAGAGGAGGGGAATAG 59.105 52.174 0.00 0.00 0.00 1.73
7702 8039 3.273618 AGAGAACAGAGGAGGGGAATAGT 59.726 47.826 0.00 0.00 0.00 2.12
7703 8040 4.034410 GAGAACAGAGGAGGGGAATAGTT 58.966 47.826 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 94 1.538135 GAGTGTGGGTAGGTGGGGT 60.538 63.158 0.00 0.00 0.00 4.95
90 95 1.131303 TTGAGTGTGGGTAGGTGGGG 61.131 60.000 0.00 0.00 0.00 4.96
157 163 1.203441 AGAGATGGCTGCCTTGGACA 61.203 55.000 21.03 0.00 0.00 4.02
470 479 1.033574 CCTAGCCCTTACCAGAGTCG 58.966 60.000 0.00 0.00 0.00 4.18
856 865 4.262463 GCCGGTCAGTTTATCCATCTATGA 60.262 45.833 1.90 0.00 0.00 2.15
1152 1161 8.031864 TCAAAAAGAAAACACAACAGAAGCATA 58.968 29.630 0.00 0.00 0.00 3.14
1154 1163 6.219473 TCAAAAAGAAAACACAACAGAAGCA 58.781 32.000 0.00 0.00 0.00 3.91
1470 1479 5.173131 GGCGAAATGTAAAAACAAGAGTGTG 59.827 40.000 0.00 0.00 38.27 3.82
1885 1895 1.836166 CAGGCTCATTTCCTGGAGAGA 59.164 52.381 13.87 5.41 45.62 3.10
1901 1911 0.960364 TCAATGGCTTCCGTTCAGGC 60.960 55.000 0.00 0.00 40.77 4.85
2112 2122 5.437060 TCACCTGCAATACTATTTTCCTCC 58.563 41.667 0.00 0.00 0.00 4.30
2211 2282 3.664107 TGGAGTTGATTAGCACACACTC 58.336 45.455 0.00 0.00 0.00 3.51
2212 2283 3.769739 TGGAGTTGATTAGCACACACT 57.230 42.857 0.00 0.00 0.00 3.55
2213 2284 4.829064 TTTGGAGTTGATTAGCACACAC 57.171 40.909 0.00 0.00 0.00 3.82
2214 2285 6.404623 GCATATTTGGAGTTGATTAGCACACA 60.405 38.462 0.00 0.00 0.00 3.72
2215 2286 5.973565 GCATATTTGGAGTTGATTAGCACAC 59.026 40.000 0.00 0.00 0.00 3.82
2216 2287 5.887598 AGCATATTTGGAGTTGATTAGCACA 59.112 36.000 0.00 0.00 0.00 4.57
2217 2288 6.382869 AGCATATTTGGAGTTGATTAGCAC 57.617 37.500 0.00 0.00 0.00 4.40
2218 2289 8.570488 CATTAGCATATTTGGAGTTGATTAGCA 58.430 33.333 0.00 0.00 0.00 3.49
2219 2290 8.025445 CCATTAGCATATTTGGAGTTGATTAGC 58.975 37.037 0.00 0.00 0.00 3.09
2220 2291 8.025445 GCCATTAGCATATTTGGAGTTGATTAG 58.975 37.037 0.00 0.00 42.97 1.73
2221 2292 7.885297 GCCATTAGCATATTTGGAGTTGATTA 58.115 34.615 0.00 0.00 42.97 1.75
2222 2293 6.752168 GCCATTAGCATATTTGGAGTTGATT 58.248 36.000 0.00 0.00 42.97 2.57
2223 2294 6.336842 GCCATTAGCATATTTGGAGTTGAT 57.663 37.500 0.00 0.00 42.97 2.57
2224 2295 5.772825 GCCATTAGCATATTTGGAGTTGA 57.227 39.130 0.00 0.00 42.97 3.18
2238 2309 2.945008 TGATTAGCACACTGCCATTAGC 59.055 45.455 0.00 0.00 46.52 3.09
2239 2310 4.637534 AGTTGATTAGCACACTGCCATTAG 59.362 41.667 0.00 0.00 46.52 1.73
2240 2311 4.588899 AGTTGATTAGCACACTGCCATTA 58.411 39.130 0.00 0.00 46.52 1.90
2241 2312 3.424703 AGTTGATTAGCACACTGCCATT 58.575 40.909 0.00 0.00 46.52 3.16
2242 2313 3.012518 GAGTTGATTAGCACACTGCCAT 58.987 45.455 0.00 0.00 46.52 4.40
2243 2314 2.038952 AGAGTTGATTAGCACACTGCCA 59.961 45.455 0.00 0.00 46.52 4.92
2244 2315 2.704572 AGAGTTGATTAGCACACTGCC 58.295 47.619 0.00 0.00 46.52 4.85
2245 2316 5.862924 TTTAGAGTTGATTAGCACACTGC 57.137 39.130 0.00 0.00 45.46 4.40
2288 2359 8.335356 GCGTTGACATTTACTATTCATGTACAT 58.665 33.333 1.41 1.41 31.10 2.29
2427 2740 3.535561 CATAACTCCACCACACCTGATC 58.464 50.000 0.00 0.00 0.00 2.92
2845 3159 4.176752 GGTAGCAGAAGGGCGGGG 62.177 72.222 0.00 0.00 39.27 5.73
2960 3274 3.873812 GACCCCCGGCCTGGTATG 61.874 72.222 12.79 2.90 34.20 2.39
2969 3283 4.499116 ATGGAGGAGGACCCCCGG 62.499 72.222 0.00 0.00 37.58 5.73
2970 3284 1.984288 GAAATGGAGGAGGACCCCCG 61.984 65.000 0.00 0.00 37.58 5.73
2971 3285 0.624795 AGAAATGGAGGAGGACCCCC 60.625 60.000 0.00 0.00 36.73 5.40
2972 3286 2.191981 TAGAAATGGAGGAGGACCCC 57.808 55.000 0.00 0.00 36.73 4.95
2973 3287 3.385115 TCTTAGAAATGGAGGAGGACCC 58.615 50.000 0.00 0.00 36.73 4.46
2974 3288 5.437191 TTTCTTAGAAATGGAGGAGGACC 57.563 43.478 2.94 0.00 0.00 4.46
2996 3310 6.655078 AGCAGACTTGGTATGACAATTTTT 57.345 33.333 0.00 0.00 32.18 1.94
2997 3311 6.655078 AAGCAGACTTGGTATGACAATTTT 57.345 33.333 0.00 0.00 33.84 1.82
2998 3312 6.294731 GGAAAGCAGACTTGGTATGACAATTT 60.295 38.462 0.00 0.00 35.85 1.82
2999 3313 5.183904 GGAAAGCAGACTTGGTATGACAATT 59.816 40.000 0.00 0.00 35.85 2.32
3000 3314 4.702131 GGAAAGCAGACTTGGTATGACAAT 59.298 41.667 0.00 0.00 35.85 2.71
3001 3315 4.072131 GGAAAGCAGACTTGGTATGACAA 58.928 43.478 0.00 0.00 35.85 3.18
3002 3316 3.072330 TGGAAAGCAGACTTGGTATGACA 59.928 43.478 0.00 0.00 35.85 3.58
3003 3317 3.674997 TGGAAAGCAGACTTGGTATGAC 58.325 45.455 0.00 0.00 35.85 3.06
3004 3318 3.582647 TCTGGAAAGCAGACTTGGTATGA 59.417 43.478 0.00 0.00 35.85 2.15
3275 3589 4.334203 GCACACCCAAAACATACGATATGA 59.666 41.667 10.64 0.00 0.00 2.15
3607 3921 6.590292 CCAGAAAAGACTAACTATGCTTCGAA 59.410 38.462 0.00 0.00 0.00 3.71
3695 4010 4.442350 AACGTAAACTGCGACTAACAAC 57.558 40.909 0.00 0.00 0.00 3.32
3925 4248 7.877612 AGAAAAATAAAACATGGATTCCCACAC 59.122 33.333 0.00 0.00 46.98 3.82
4500 4823 2.618816 CCCTGGCAAAGCTTGATGACTA 60.619 50.000 0.00 0.00 0.00 2.59
4731 5054 5.542251 AGGCTTCAGGATCTTTATAGAGTCC 59.458 44.000 0.00 4.65 32.92 3.85
4890 5213 5.330295 GCTGCAACTATCTCATTTGAACTG 58.670 41.667 0.00 0.00 0.00 3.16
5031 5354 4.081697 TGCAAGTCGATCAAATGGTAGAGA 60.082 41.667 0.00 0.00 0.00 3.10
5121 5444 6.650807 TGTGTTGTTGATCATCTCTCTTTACC 59.349 38.462 0.00 0.00 0.00 2.85
5552 5875 7.692460 AATTAGAATGTCACTGAAGCATTGA 57.308 32.000 0.73 0.00 33.56 2.57
6120 6449 4.170125 GTCGATGATGCTTTAACGACAG 57.830 45.455 17.67 0.00 45.66 3.51
6173 6502 4.152402 ACGAATGTTGTCAGAAAGAATCGG 59.848 41.667 0.00 0.00 0.00 4.18
6194 6523 4.094739 TGTGCATATTCAATCACAGGAACG 59.905 41.667 0.00 0.00 34.87 3.95
6321 6651 0.826715 TAGGGCTGTGATCTGAGCAC 59.173 55.000 18.49 18.49 39.04 4.40
6332 6662 2.971330 CTGATGGAGAGAATAGGGCTGT 59.029 50.000 0.00 0.00 0.00 4.40
6335 6665 4.141620 TGTTTCTGATGGAGAGAATAGGGC 60.142 45.833 0.00 0.00 30.18 5.19
6345 6675 2.069273 GTCGGTGTGTTTCTGATGGAG 58.931 52.381 0.00 0.00 0.00 3.86
6347 6677 0.790207 CGTCGGTGTGTTTCTGATGG 59.210 55.000 0.00 0.00 0.00 3.51
6493 6823 3.451178 TGATCTTAGTGGAACCTAGTGGC 59.549 47.826 0.00 0.00 37.80 5.01
6565 6895 0.748005 AGTTCACCGTGTTTGCTGCT 60.748 50.000 0.00 0.00 0.00 4.24
6598 6928 4.219725 GCTTCCCAGTCTATACATCTCTCC 59.780 50.000 0.00 0.00 0.00 3.71
6689 7019 3.733709 CTTGTCAGCAAGGAAGGGT 57.266 52.632 0.00 0.00 46.17 4.34
6896 7227 3.006659 TGCAAGTTAAAATCACACCGC 57.993 42.857 0.00 0.00 0.00 5.68
7011 7342 4.201871 TGTGTGGAGAACGAAAAATGACAC 60.202 41.667 0.00 0.00 33.41 3.67
7035 7366 2.354103 GGAAGCTCCGCAGATATGCATA 60.354 50.000 13.57 9.27 34.41 3.14
7109 7440 2.039216 TGGAGAATCGGTAAAGCAACCA 59.961 45.455 4.11 0.00 39.71 3.67
7142 7474 3.028130 ACAACAAAGTGGTTAACCCCAG 58.972 45.455 21.97 9.68 34.43 4.45
7143 7475 3.103080 ACAACAAAGTGGTTAACCCCA 57.897 42.857 21.97 0.93 34.29 4.96
7147 7479 6.951643 AGAATCGTACAACAAAGTGGTTAAC 58.048 36.000 0.00 0.00 0.00 2.01
7149 7481 8.089597 TGATAGAATCGTACAACAAAGTGGTTA 58.910 33.333 0.00 0.00 0.00 2.85
7151 7483 6.460781 TGATAGAATCGTACAACAAAGTGGT 58.539 36.000 0.00 0.00 0.00 4.16
7153 7485 7.792925 TGTTGATAGAATCGTACAACAAAGTG 58.207 34.615 15.09 0.00 44.53 3.16
7154 7486 7.956420 TGTTGATAGAATCGTACAACAAAGT 57.044 32.000 15.09 0.00 44.53 2.66
7161 7493 7.543756 TCATTCTGTGTTGATAGAATCGTACA 58.456 34.615 0.00 0.00 40.62 2.90
7194 7526 9.950496 AAGAGAGAAAACATATGTACAAGATGT 57.050 29.630 16.96 16.96 35.32 3.06
7208 7540 9.823647 CCATAGCTTTATAGAAGAGAGAAAACA 57.176 33.333 0.00 0.00 0.00 2.83
7209 7541 9.825109 ACCATAGCTTTATAGAAGAGAGAAAAC 57.175 33.333 0.00 0.00 0.00 2.43
7213 7545 8.744652 GCATACCATAGCTTTATAGAAGAGAGA 58.255 37.037 0.00 0.00 0.00 3.10
7214 7546 8.748412 AGCATACCATAGCTTTATAGAAGAGAG 58.252 37.037 0.00 0.00 38.01 3.20
7215 7547 8.657387 AGCATACCATAGCTTTATAGAAGAGA 57.343 34.615 0.00 0.00 38.01 3.10
7227 7559 1.949525 CGCCAAAAGCATACCATAGCT 59.050 47.619 0.00 0.00 44.04 3.32
7228 7560 1.676006 ACGCCAAAAGCATACCATAGC 59.324 47.619 0.00 0.00 44.04 2.97
7229 7561 4.468095 GTACGCCAAAAGCATACCATAG 57.532 45.455 0.00 0.00 44.04 2.23
7234 7566 1.669265 GAGGGTACGCCAAAAGCATAC 59.331 52.381 6.27 0.00 44.04 2.39
7235 7567 1.741055 CGAGGGTACGCCAAAAGCATA 60.741 52.381 6.27 0.00 44.04 3.14
7236 7568 1.024579 CGAGGGTACGCCAAAAGCAT 61.025 55.000 6.27 0.00 44.04 3.79
7237 7569 1.669760 CGAGGGTACGCCAAAAGCA 60.670 57.895 6.27 0.00 44.04 3.91
7238 7570 0.952010 TTCGAGGGTACGCCAAAAGC 60.952 55.000 6.27 0.00 36.17 3.51
7239 7571 1.515081 TTTCGAGGGTACGCCAAAAG 58.485 50.000 6.27 0.00 36.17 2.27
7240 7572 1.964552 TTTTCGAGGGTACGCCAAAA 58.035 45.000 6.27 7.05 36.17 2.44
7241 7573 1.964552 TTTTTCGAGGGTACGCCAAA 58.035 45.000 6.27 1.11 36.17 3.28
7242 7574 3.702147 TTTTTCGAGGGTACGCCAA 57.298 47.368 6.27 0.00 36.17 4.52
7262 7594 7.591426 GCTGTTTGATGTAAAAAGATCGTTCTT 59.409 33.333 2.83 2.83 44.20 2.52
7263 7595 7.078228 GCTGTTTGATGTAAAAAGATCGTTCT 58.922 34.615 0.00 0.00 35.93 3.01
7264 7596 6.031417 CGCTGTTTGATGTAAAAAGATCGTTC 59.969 38.462 0.00 0.00 35.93 3.95
7265 7597 5.851177 CGCTGTTTGATGTAAAAAGATCGTT 59.149 36.000 0.00 0.00 35.93 3.85
7266 7598 5.178623 TCGCTGTTTGATGTAAAAAGATCGT 59.821 36.000 0.00 0.00 35.93 3.73
7267 7599 5.617609 TCGCTGTTTGATGTAAAAAGATCG 58.382 37.500 0.00 0.00 35.93 3.69
7308 7640 9.612620 GACATTGTGGTTTTGATCTTAGTAAAG 57.387 33.333 0.00 0.00 0.00 1.85
7309 7641 8.286800 CGACATTGTGGTTTTGATCTTAGTAAA 58.713 33.333 0.00 0.00 0.00 2.01
7312 7644 5.334879 GCGACATTGTGGTTTTGATCTTAGT 60.335 40.000 0.00 0.00 0.00 2.24
7315 7647 3.317711 TGCGACATTGTGGTTTTGATCTT 59.682 39.130 0.00 0.00 0.00 2.40
7321 7653 6.703607 TGATTTTATTGCGACATTGTGGTTTT 59.296 30.769 0.00 0.00 0.00 2.43
7332 7664 9.807386 GGTTGTATATACTGATTTTATTGCGAC 57.193 33.333 13.89 0.00 0.00 5.19
7333 7665 9.772973 AGGTTGTATATACTGATTTTATTGCGA 57.227 29.630 13.89 0.00 0.00 5.10
7385 7717 3.734231 AGTTCTGTGTGTTCGTTATCGTG 59.266 43.478 0.00 0.00 38.33 4.35
7392 7724 1.270147 GCCCTAGTTCTGTGTGTTCGT 60.270 52.381 0.00 0.00 0.00 3.85
7397 7729 0.674895 GGCTGCCCTAGTTCTGTGTG 60.675 60.000 7.66 0.00 0.00 3.82
7405 7737 1.075525 TGTATCCGGCTGCCCTAGT 60.076 57.895 14.12 0.00 0.00 2.57
7439 7776 0.809636 TATGACGCCGGCATGAGTTG 60.810 55.000 28.98 10.77 0.00 3.16
7449 7786 1.063469 GTTTGGGATGTTATGACGCCG 59.937 52.381 0.00 0.00 0.00 6.46
7462 7799 2.091885 GGATGATTGCCTAGGTTTGGGA 60.092 50.000 11.31 0.00 0.00 4.37
7465 7802 2.360165 GCTGGATGATTGCCTAGGTTTG 59.640 50.000 11.31 0.00 0.00 2.93
7472 7809 0.183014 CTGGAGCTGGATGATTGCCT 59.817 55.000 0.00 0.00 0.00 4.75
7473 7810 0.822532 CCTGGAGCTGGATGATTGCC 60.823 60.000 0.00 0.00 0.00 4.52
7474 7811 0.106819 ACCTGGAGCTGGATGATTGC 60.107 55.000 0.00 0.00 0.00 3.56
7475 7812 3.072038 TGATACCTGGAGCTGGATGATTG 59.928 47.826 0.00 0.00 0.00 2.67
7476 7813 3.072184 GTGATACCTGGAGCTGGATGATT 59.928 47.826 0.00 0.00 0.00 2.57
7477 7814 2.636893 GTGATACCTGGAGCTGGATGAT 59.363 50.000 0.00 0.00 0.00 2.45
7478 7815 2.042464 GTGATACCTGGAGCTGGATGA 58.958 52.381 0.00 0.00 0.00 2.92
7479 7816 1.071385 GGTGATACCTGGAGCTGGATG 59.929 57.143 0.00 0.00 34.73 3.51
7480 7817 1.344393 TGGTGATACCTGGAGCTGGAT 60.344 52.381 0.00 0.00 39.58 3.41
7481 7818 0.042581 TGGTGATACCTGGAGCTGGA 59.957 55.000 0.00 0.00 39.58 3.86
7482 7819 0.911769 TTGGTGATACCTGGAGCTGG 59.088 55.000 0.00 0.00 39.58 4.85
7483 7820 1.134280 CCTTGGTGATACCTGGAGCTG 60.134 57.143 0.00 0.00 39.58 4.24
7484 7821 1.207791 CCTTGGTGATACCTGGAGCT 58.792 55.000 0.00 0.00 39.58 4.09
7485 7822 1.139853 CTCCTTGGTGATACCTGGAGC 59.860 57.143 19.47 0.00 45.19 4.70
7487 7824 2.571653 CAACTCCTTGGTGATACCTGGA 59.428 50.000 0.00 10.94 39.58 3.86
7488 7825 2.305927 ACAACTCCTTGGTGATACCTGG 59.694 50.000 0.00 0.00 39.58 4.45
7489 7826 3.703001 ACAACTCCTTGGTGATACCTG 57.297 47.619 0.00 0.00 39.58 4.00
7490 7827 5.395324 CGATAACAACTCCTTGGTGATACCT 60.395 44.000 0.00 0.00 39.58 3.08
7491 7828 4.809426 CGATAACAACTCCTTGGTGATACC 59.191 45.833 0.00 0.00 36.72 2.73
7492 7829 4.809426 CCGATAACAACTCCTTGGTGATAC 59.191 45.833 0.00 0.00 36.72 2.24
7493 7830 4.468510 ACCGATAACAACTCCTTGGTGATA 59.531 41.667 0.00 0.00 36.72 2.15
7494 7831 3.263425 ACCGATAACAACTCCTTGGTGAT 59.737 43.478 0.00 0.00 36.72 3.06
7495 7832 2.635915 ACCGATAACAACTCCTTGGTGA 59.364 45.455 0.00 0.00 36.72 4.02
7496 7833 2.742053 CACCGATAACAACTCCTTGGTG 59.258 50.000 0.00 0.00 39.58 4.17
7497 7834 2.635915 TCACCGATAACAACTCCTTGGT 59.364 45.455 0.00 0.00 0.00 3.67
7498 7835 3.000727 GTCACCGATAACAACTCCTTGG 58.999 50.000 0.00 0.00 0.00 3.61
7499 7836 3.679980 CAGTCACCGATAACAACTCCTTG 59.320 47.826 0.00 0.00 0.00 3.61
7500 7837 3.864921 GCAGTCACCGATAACAACTCCTT 60.865 47.826 0.00 0.00 0.00 3.36
7501 7838 2.353803 GCAGTCACCGATAACAACTCCT 60.354 50.000 0.00 0.00 0.00 3.69
7502 7839 2.000447 GCAGTCACCGATAACAACTCC 59.000 52.381 0.00 0.00 0.00 3.85
7503 7840 2.683968 TGCAGTCACCGATAACAACTC 58.316 47.619 0.00 0.00 0.00 3.01
7504 7841 2.831685 TGCAGTCACCGATAACAACT 57.168 45.000 0.00 0.00 0.00 3.16
7505 7842 4.494199 GCTAATGCAGTCACCGATAACAAC 60.494 45.833 0.00 0.00 39.41 3.32
7506 7843 3.621268 GCTAATGCAGTCACCGATAACAA 59.379 43.478 0.00 0.00 39.41 2.83
7507 7844 3.194861 GCTAATGCAGTCACCGATAACA 58.805 45.455 0.00 0.00 39.41 2.41
7508 7845 3.194861 TGCTAATGCAGTCACCGATAAC 58.805 45.455 0.00 0.00 45.31 1.89
7509 7846 3.535280 TGCTAATGCAGTCACCGATAA 57.465 42.857 0.00 0.00 45.31 1.75
7521 7858 1.946768 TGGAATTAGGCGTGCTAATGC 59.053 47.619 0.00 0.00 37.61 3.56
7522 7859 2.031682 GCTGGAATTAGGCGTGCTAATG 60.032 50.000 0.00 0.00 0.00 1.90
7523 7860 2.222027 GCTGGAATTAGGCGTGCTAAT 58.778 47.619 0.00 0.00 0.00 1.73
7524 7861 1.663695 GCTGGAATTAGGCGTGCTAA 58.336 50.000 0.00 0.00 0.00 3.09
7525 7862 0.529773 CGCTGGAATTAGGCGTGCTA 60.530 55.000 9.89 0.00 43.28 3.49
7526 7863 1.815421 CGCTGGAATTAGGCGTGCT 60.815 57.895 9.89 0.00 43.28 4.40
7527 7864 2.709475 CGCTGGAATTAGGCGTGC 59.291 61.111 9.89 0.00 43.28 5.34
7528 7865 2.823829 GCCGCTGGAATTAGGCGTG 61.824 63.158 14.76 9.36 46.23 5.34
7529 7866 2.513897 GCCGCTGGAATTAGGCGT 60.514 61.111 14.76 0.00 46.23 5.68
7532 7869 0.394352 ACCTTGCCGCTGGAATTAGG 60.394 55.000 9.44 0.00 0.00 2.69
7533 7870 1.017387 GACCTTGCCGCTGGAATTAG 58.983 55.000 9.44 0.00 0.00 1.73
7534 7871 0.618458 AGACCTTGCCGCTGGAATTA 59.382 50.000 9.44 0.00 0.00 1.40
7535 7872 0.962356 CAGACCTTGCCGCTGGAATT 60.962 55.000 9.44 0.00 0.00 2.17
7536 7873 1.377725 CAGACCTTGCCGCTGGAAT 60.378 57.895 9.44 0.00 0.00 3.01
7537 7874 2.032528 CAGACCTTGCCGCTGGAA 59.967 61.111 9.44 0.00 0.00 3.53
7538 7875 2.922503 TCAGACCTTGCCGCTGGA 60.923 61.111 9.44 0.00 0.00 3.86
7539 7876 1.888436 TAGTCAGACCTTGCCGCTGG 61.888 60.000 0.00 0.00 0.00 4.85
7540 7877 0.459237 CTAGTCAGACCTTGCCGCTG 60.459 60.000 0.00 0.00 0.00 5.18
7541 7878 0.612174 TCTAGTCAGACCTTGCCGCT 60.612 55.000 0.00 0.00 0.00 5.52
7542 7879 0.179124 CTCTAGTCAGACCTTGCCGC 60.179 60.000 0.00 0.00 0.00 6.53
7543 7880 1.133407 GTCTCTAGTCAGACCTTGCCG 59.867 57.143 0.00 0.00 37.43 5.69
7544 7881 1.133407 CGTCTCTAGTCAGACCTTGCC 59.867 57.143 6.11 0.00 39.90 4.52
7545 7882 1.813786 ACGTCTCTAGTCAGACCTTGC 59.186 52.381 6.11 0.00 39.90 4.01
7546 7883 3.754323 AGAACGTCTCTAGTCAGACCTTG 59.246 47.826 6.11 0.00 39.90 3.61
7547 7884 4.023726 AGAACGTCTCTAGTCAGACCTT 57.976 45.455 6.11 1.98 39.90 3.50
7548 7885 3.706600 AGAACGTCTCTAGTCAGACCT 57.293 47.619 6.11 0.00 39.90 3.85
7549 7886 4.004982 AGAAGAACGTCTCTAGTCAGACC 58.995 47.826 6.11 0.00 39.90 3.85
7550 7887 5.387279 CAAGAAGAACGTCTCTAGTCAGAC 58.613 45.833 0.00 2.20 39.68 3.51
7551 7888 4.083217 GCAAGAAGAACGTCTCTAGTCAGA 60.083 45.833 0.00 0.00 32.46 3.27
7552 7889 4.162812 GCAAGAAGAACGTCTCTAGTCAG 58.837 47.826 0.00 0.00 32.46 3.51
7553 7890 3.057456 GGCAAGAAGAACGTCTCTAGTCA 60.057 47.826 0.00 0.00 32.46 3.41
7554 7891 3.057456 TGGCAAGAAGAACGTCTCTAGTC 60.057 47.826 0.00 0.00 32.46 2.59
7555 7892 2.891580 TGGCAAGAAGAACGTCTCTAGT 59.108 45.455 0.00 0.00 32.46 2.57
7556 7893 3.246619 GTGGCAAGAAGAACGTCTCTAG 58.753 50.000 0.00 0.00 32.46 2.43
7557 7894 2.626266 TGTGGCAAGAAGAACGTCTCTA 59.374 45.455 0.00 0.00 32.46 2.43
7558 7895 1.412710 TGTGGCAAGAAGAACGTCTCT 59.587 47.619 0.00 0.00 35.13 3.10
7559 7896 1.795286 CTGTGGCAAGAAGAACGTCTC 59.205 52.381 0.00 0.00 0.00 3.36
7560 7897 1.541233 CCTGTGGCAAGAAGAACGTCT 60.541 52.381 0.00 0.00 0.00 4.18
7561 7898 0.868406 CCTGTGGCAAGAAGAACGTC 59.132 55.000 0.00 0.00 0.00 4.34
7562 7899 0.180406 ACCTGTGGCAAGAAGAACGT 59.820 50.000 0.00 0.00 0.00 3.99
7563 7900 0.588252 CACCTGTGGCAAGAAGAACG 59.412 55.000 0.00 0.00 0.00 3.95
7564 7901 1.334869 CACACCTGTGGCAAGAAGAAC 59.665 52.381 1.91 0.00 42.10 3.01
7565 7902 1.679139 CACACCTGTGGCAAGAAGAA 58.321 50.000 1.91 0.00 42.10 2.52
7566 7903 3.402186 CACACCTGTGGCAAGAAGA 57.598 52.632 1.91 0.00 42.10 2.87
7576 7913 2.428622 GGGGCGTTACACACCTGT 59.571 61.111 0.00 0.00 0.00 4.00
7577 7914 2.515996 ATCGGGGCGTTACACACCTG 62.516 60.000 0.00 0.00 0.00 4.00
7578 7915 2.234913 GATCGGGGCGTTACACACCT 62.235 60.000 0.00 0.00 0.00 4.00
7579 7916 1.812507 GATCGGGGCGTTACACACC 60.813 63.158 0.00 0.00 0.00 4.16
7580 7917 1.082117 CAGATCGGGGCGTTACACAC 61.082 60.000 0.00 0.00 0.00 3.82
7581 7918 1.216977 CAGATCGGGGCGTTACACA 59.783 57.895 0.00 0.00 0.00 3.72
7582 7919 1.082117 CACAGATCGGGGCGTTACAC 61.082 60.000 0.00 0.00 0.00 2.90
7583 7920 1.216977 CACAGATCGGGGCGTTACA 59.783 57.895 0.00 0.00 0.00 2.41
7584 7921 0.804933 GACACAGATCGGGGCGTTAC 60.805 60.000 0.00 0.00 0.00 2.50
7585 7922 1.514087 GACACAGATCGGGGCGTTA 59.486 57.895 0.00 0.00 0.00 3.18
7586 7923 2.264794 GACACAGATCGGGGCGTT 59.735 61.111 0.00 0.00 0.00 4.84
7587 7924 4.129737 CGACACAGATCGGGGCGT 62.130 66.667 6.86 0.00 38.47 5.68
7589 7926 4.451150 TGCGACACAGATCGGGGC 62.451 66.667 0.00 0.00 42.49 5.80
7602 7939 2.360726 TACTCTGGTCGCCTGCGA 60.361 61.111 10.61 10.61 46.87 5.10
7603 7940 2.103143 CTACTCTGGTCGCCTGCG 59.897 66.667 4.92 4.92 41.35 5.18
7604 7941 2.496817 CCTACTCTGGTCGCCTGC 59.503 66.667 0.00 0.00 0.00 4.85
7605 7942 2.290122 CTGCCTACTCTGGTCGCCTG 62.290 65.000 0.00 0.00 0.00 4.85
7606 7943 2.037367 TGCCTACTCTGGTCGCCT 59.963 61.111 0.00 0.00 0.00 5.52
7607 7944 2.010582 CTCTGCCTACTCTGGTCGCC 62.011 65.000 0.00 0.00 0.00 5.54
7608 7945 1.435515 CTCTGCCTACTCTGGTCGC 59.564 63.158 0.00 0.00 0.00 5.19
7609 7946 1.388065 CCCTCTGCCTACTCTGGTCG 61.388 65.000 0.00 0.00 0.00 4.79
7610 7947 1.045911 CCCCTCTGCCTACTCTGGTC 61.046 65.000 0.00 0.00 0.00 4.02
7611 7948 1.002274 CCCCTCTGCCTACTCTGGT 59.998 63.158 0.00 0.00 0.00 4.00
7612 7949 1.764054 CCCCCTCTGCCTACTCTGG 60.764 68.421 0.00 0.00 0.00 3.86
7613 7950 0.105246 ATCCCCCTCTGCCTACTCTG 60.105 60.000 0.00 0.00 0.00 3.35
7614 7951 0.189822 GATCCCCCTCTGCCTACTCT 59.810 60.000 0.00 0.00 0.00 3.24
7615 7952 0.189822 AGATCCCCCTCTGCCTACTC 59.810 60.000 0.00 0.00 0.00 2.59
7616 7953 0.105246 CAGATCCCCCTCTGCCTACT 60.105 60.000 0.00 0.00 36.53 2.57
7617 7954 1.124477 CCAGATCCCCCTCTGCCTAC 61.124 65.000 0.00 0.00 41.12 3.18
7618 7955 1.237163 CCAGATCCCCCTCTGCCTA 59.763 63.158 0.00 0.00 41.12 3.93
7619 7956 2.040043 CCAGATCCCCCTCTGCCT 60.040 66.667 0.00 0.00 41.12 4.75
7620 7957 3.174265 CCCAGATCCCCCTCTGCC 61.174 72.222 0.00 0.00 41.12 4.85
7621 7958 1.281925 TTTCCCAGATCCCCCTCTGC 61.282 60.000 0.00 0.00 41.12 4.26
7622 7959 0.842635 CTTTCCCAGATCCCCCTCTG 59.157 60.000 0.00 0.00 41.93 3.35
7623 7960 0.327964 CCTTTCCCAGATCCCCCTCT 60.328 60.000 0.00 0.00 0.00 3.69
7624 7961 1.356494 CCCTTTCCCAGATCCCCCTC 61.356 65.000 0.00 0.00 0.00 4.30
7625 7962 1.309102 CCCTTTCCCAGATCCCCCT 60.309 63.158 0.00 0.00 0.00 4.79
7626 7963 2.395353 CCCCTTTCCCAGATCCCCC 61.395 68.421 0.00 0.00 0.00 5.40
7627 7964 2.395353 CCCCCTTTCCCAGATCCCC 61.395 68.421 0.00 0.00 0.00 4.81
7628 7965 0.702706 ATCCCCCTTTCCCAGATCCC 60.703 60.000 0.00 0.00 0.00 3.85
7629 7966 0.480252 CATCCCCCTTTCCCAGATCC 59.520 60.000 0.00 0.00 0.00 3.36
7630 7967 1.423161 CTCATCCCCCTTTCCCAGATC 59.577 57.143 0.00 0.00 0.00 2.75
7631 7968 1.011293 TCTCATCCCCCTTTCCCAGAT 59.989 52.381 0.00 0.00 0.00 2.90
7632 7969 0.421495 TCTCATCCCCCTTTCCCAGA 59.579 55.000 0.00 0.00 0.00 3.86
7633 7970 1.527457 ATCTCATCCCCCTTTCCCAG 58.473 55.000 0.00 0.00 0.00 4.45
7634 7971 2.908263 TATCTCATCCCCCTTTCCCA 57.092 50.000 0.00 0.00 0.00 4.37
7635 7972 3.463704 AGTTTATCTCATCCCCCTTTCCC 59.536 47.826 0.00 0.00 0.00 3.97
7636 7973 4.797912 AGTTTATCTCATCCCCCTTTCC 57.202 45.455 0.00 0.00 0.00 3.13
7637 7974 4.889995 CCAAGTTTATCTCATCCCCCTTTC 59.110 45.833 0.00 0.00 0.00 2.62
7638 7975 4.544152 TCCAAGTTTATCTCATCCCCCTTT 59.456 41.667 0.00 0.00 0.00 3.11
7639 7976 4.119155 TCCAAGTTTATCTCATCCCCCTT 58.881 43.478 0.00 0.00 0.00 3.95
7640 7977 3.718956 CTCCAAGTTTATCTCATCCCCCT 59.281 47.826 0.00 0.00 0.00 4.79
7641 7978 3.716872 TCTCCAAGTTTATCTCATCCCCC 59.283 47.826 0.00 0.00 0.00 5.40
7642 7979 5.372373 CTTCTCCAAGTTTATCTCATCCCC 58.628 45.833 0.00 0.00 0.00 4.81
7643 7980 5.372373 CCTTCTCCAAGTTTATCTCATCCC 58.628 45.833 0.00 0.00 0.00 3.85
7644 7981 5.372373 CCCTTCTCCAAGTTTATCTCATCC 58.628 45.833 0.00 0.00 0.00 3.51
7645 7982 5.131142 TCCCCTTCTCCAAGTTTATCTCATC 59.869 44.000 0.00 0.00 0.00 2.92
7646 7983 5.039645 TCCCCTTCTCCAAGTTTATCTCAT 58.960 41.667 0.00 0.00 0.00 2.90
7647 7984 4.435137 TCCCCTTCTCCAAGTTTATCTCA 58.565 43.478 0.00 0.00 0.00 3.27
7648 7985 5.131142 TCATCCCCTTCTCCAAGTTTATCTC 59.869 44.000 0.00 0.00 0.00 2.75
7649 7986 5.039645 TCATCCCCTTCTCCAAGTTTATCT 58.960 41.667 0.00 0.00 0.00 1.98
7650 7987 5.372373 CTCATCCCCTTCTCCAAGTTTATC 58.628 45.833 0.00 0.00 0.00 1.75
7651 7988 4.385754 GCTCATCCCCTTCTCCAAGTTTAT 60.386 45.833 0.00 0.00 0.00 1.40
7652 7989 3.054361 GCTCATCCCCTTCTCCAAGTTTA 60.054 47.826 0.00 0.00 0.00 2.01
7653 7990 2.291217 GCTCATCCCCTTCTCCAAGTTT 60.291 50.000 0.00 0.00 0.00 2.66
7654 7991 1.283321 GCTCATCCCCTTCTCCAAGTT 59.717 52.381 0.00 0.00 0.00 2.66
7655 7992 0.915364 GCTCATCCCCTTCTCCAAGT 59.085 55.000 0.00 0.00 0.00 3.16
7656 7993 0.914644 TGCTCATCCCCTTCTCCAAG 59.085 55.000 0.00 0.00 0.00 3.61
7657 7994 0.914644 CTGCTCATCCCCTTCTCCAA 59.085 55.000 0.00 0.00 0.00 3.53
7658 7995 0.043183 TCTGCTCATCCCCTTCTCCA 59.957 55.000 0.00 0.00 0.00 3.86
7659 7996 0.758123 CTCTGCTCATCCCCTTCTCC 59.242 60.000 0.00 0.00 0.00 3.71
7660 7997 0.758123 CCTCTGCTCATCCCCTTCTC 59.242 60.000 0.00 0.00 0.00 2.87
7661 7998 0.341258 TCCTCTGCTCATCCCCTTCT 59.659 55.000 0.00 0.00 0.00 2.85
7662 7999 0.758123 CTCCTCTGCTCATCCCCTTC 59.242 60.000 0.00 0.00 0.00 3.46
7663 8000 0.341258 TCTCCTCTGCTCATCCCCTT 59.659 55.000 0.00 0.00 0.00 3.95
7664 8001 0.105555 CTCTCCTCTGCTCATCCCCT 60.106 60.000 0.00 0.00 0.00 4.79
7665 8002 0.105760 TCTCTCCTCTGCTCATCCCC 60.106 60.000 0.00 0.00 0.00 4.81
7666 8003 1.412343 GTTCTCTCCTCTGCTCATCCC 59.588 57.143 0.00 0.00 0.00 3.85
7667 8004 2.101249 CTGTTCTCTCCTCTGCTCATCC 59.899 54.545 0.00 0.00 0.00 3.51
7668 8005 3.023119 TCTGTTCTCTCCTCTGCTCATC 58.977 50.000 0.00 0.00 0.00 2.92
7669 8006 3.025978 CTCTGTTCTCTCCTCTGCTCAT 58.974 50.000 0.00 0.00 0.00 2.90
7670 8007 2.445427 CTCTGTTCTCTCCTCTGCTCA 58.555 52.381 0.00 0.00 0.00 4.26
7671 8008 1.750778 CCTCTGTTCTCTCCTCTGCTC 59.249 57.143 0.00 0.00 0.00 4.26
7672 8009 1.357420 TCCTCTGTTCTCTCCTCTGCT 59.643 52.381 0.00 0.00 0.00 4.24
7673 8010 1.750778 CTCCTCTGTTCTCTCCTCTGC 59.249 57.143 0.00 0.00 0.00 4.26
7674 8011 2.378038 CCTCCTCTGTTCTCTCCTCTG 58.622 57.143 0.00 0.00 0.00 3.35
7675 8012 1.287739 CCCTCCTCTGTTCTCTCCTCT 59.712 57.143 0.00 0.00 0.00 3.69
7676 8013 1.687996 CCCCTCCTCTGTTCTCTCCTC 60.688 61.905 0.00 0.00 0.00 3.71
7677 8014 0.338120 CCCCTCCTCTGTTCTCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
7678 8015 0.336737 TCCCCTCCTCTGTTCTCTCC 59.663 60.000 0.00 0.00 0.00 3.71
7679 8016 2.239681 TTCCCCTCCTCTGTTCTCTC 57.760 55.000 0.00 0.00 0.00 3.20
7680 8017 2.959421 ATTCCCCTCCTCTGTTCTCT 57.041 50.000 0.00 0.00 0.00 3.10
7681 8018 3.648739 ACTATTCCCCTCCTCTGTTCTC 58.351 50.000 0.00 0.00 0.00 2.87
7682 8019 3.786213 ACTATTCCCCTCCTCTGTTCT 57.214 47.619 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.