Multiple sequence alignment - TraesCS3B01G133600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G133600 chr3B 100.000 3545 0 0 1 3545 116011303 116007759 0.000000e+00 6547.0
1 TraesCS3B01G133600 chr3B 93.918 1858 84 10 769 2613 116080662 116082503 0.000000e+00 2778.0
2 TraesCS3B01G133600 chr3B 91.558 154 9 2 608 761 116079924 116080073 3.590000e-50 209.0
3 TraesCS3B01G133600 chr3B 88.889 171 15 4 351 518 63010424 63010593 1.290000e-49 207.0
4 TraesCS3B01G133600 chr3B 91.216 148 12 1 357 503 724686225 724686078 2.160000e-47 200.0
5 TraesCS3B01G133600 chr3B 88.112 143 16 1 3323 3464 702692927 702692785 6.090000e-38 169.0
6 TraesCS3B01G133600 chr3B 87.681 138 15 2 3328 3464 116145971 116146107 3.660000e-35 159.0
7 TraesCS3B01G133600 chr3B 91.429 105 8 1 504 607 116079790 116079894 3.690000e-30 143.0
8 TraesCS3B01G133600 chr3A 89.984 2546 126 64 608 3125 81483895 81481451 0.000000e+00 3169.0
9 TraesCS3B01G133600 chr3A 90.509 2318 106 44 502 2768 81484027 81481773 0.000000e+00 2957.0
10 TraesCS3B01G133600 chr3A 94.141 1758 77 10 868 2607 81662788 81664537 0.000000e+00 2652.0
11 TraesCS3B01G133600 chr3A 83.710 221 26 2 139 359 81658402 81658612 2.160000e-47 200.0
12 TraesCS3B01G133600 chr3A 84.135 208 20 6 608 812 81662568 81662765 4.670000e-44 189.0
13 TraesCS3B01G133600 chr3A 87.719 114 12 2 505 617 81658617 81658729 7.990000e-27 132.0
14 TraesCS3B01G133600 chr3A 84.034 119 16 3 2725 2841 81664689 81664806 1.040000e-20 111.0
15 TraesCS3B01G133600 chr3A 92.308 65 5 0 294 358 81484095 81484031 3.770000e-15 93.5
16 TraesCS3B01G133600 chr3A 82.796 93 2 3 3167 3256 81481329 81481248 1.770000e-08 71.3
17 TraesCS3B01G133600 chr3A 97.436 39 1 0 3122 3160 81481425 81481387 2.280000e-07 67.6
18 TraesCS3B01G133600 chr3D 94.503 1983 81 8 608 2576 70228444 70230412 0.000000e+00 3033.0
19 TraesCS3B01G133600 chr3D 92.833 2051 88 24 617 2626 69908108 69906076 0.000000e+00 2918.0
20 TraesCS3B01G133600 chr3D 91.304 552 28 10 792 1342 69915667 69915135 0.000000e+00 736.0
21 TraesCS3B01G133600 chr3D 94.946 277 14 0 1339 1615 69913632 69913356 5.430000e-118 435.0
22 TraesCS3B01G133600 chr3D 83.061 490 27 14 2684 3125 69905974 69905493 9.220000e-106 394.0
23 TraesCS3B01G133600 chr3D 89.444 180 9 2 629 808 69917376 69917207 5.960000e-53 219.0
24 TraesCS3B01G133600 chr3D 85.106 188 9 3 3122 3309 69905467 69905299 1.310000e-39 174.0
25 TraesCS3B01G133600 chr3D 87.857 140 16 1 3323 3461 531368162 531368023 2.830000e-36 163.0
26 TraesCS3B01G133600 chr3D 91.026 78 6 1 504 581 70228278 70228354 1.740000e-18 104.0
27 TraesCS3B01G133600 chr7D 87.155 1705 177 26 871 2538 29677001 29675302 0.000000e+00 1897.0
28 TraesCS3B01G133600 chr7D 86.819 1707 184 24 869 2538 29698285 29696583 0.000000e+00 1868.0
29 TraesCS3B01G133600 chr4A 81.597 1565 226 34 996 2538 5348707 5350231 0.000000e+00 1238.0
30 TraesCS3B01G133600 chr4B 79.680 438 73 14 2073 2502 634726663 634726234 5.750000e-78 302.0
31 TraesCS3B01G133600 chr4B 84.277 159 19 6 3318 3473 37855649 37855494 2.200000e-32 150.0
32 TraesCS3B01G133600 chr6D 93.103 145 9 1 357 500 34388556 34388412 9.970000e-51 211.0
33 TraesCS3B01G133600 chr5D 93.056 144 9 1 357 499 505463711 505463854 3.590000e-50 209.0
34 TraesCS3B01G133600 chrUn 88.953 172 14 4 351 518 178701668 178701498 1.290000e-49 207.0
35 TraesCS3B01G133600 chr5B 92.414 145 9 2 361 503 9080670 9080526 4.640000e-49 206.0
36 TraesCS3B01G133600 chr5B 86.897 145 15 4 3325 3467 689398993 689399135 3.660000e-35 159.0
37 TraesCS3B01G133600 chr6A 91.781 146 10 2 354 498 490994064 490994208 6.000000e-48 202.0
38 TraesCS3B01G133600 chr1A 91.333 150 10 3 361 507 107344279 107344130 6.000000e-48 202.0
39 TraesCS3B01G133600 chr1B 90.604 149 13 1 356 503 411421336 411421188 2.790000e-46 196.0
40 TraesCS3B01G133600 chr1B 84.906 159 17 6 3318 3473 478717187 478717341 1.700000e-33 154.0
41 TraesCS3B01G133600 chr5A 87.500 144 14 4 3326 3467 658600606 658600465 2.830000e-36 163.0
42 TraesCS3B01G133600 chr2B 87.324 142 17 1 3323 3463 646964333 646964474 1.020000e-35 161.0
43 TraesCS3B01G133600 chr1D 84.810 158 20 4 3318 3473 356143355 356143510 4.740000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G133600 chr3B 116007759 116011303 3544 True 6547.000000 6547 100.000000 1 3545 1 chr3B.!!$R1 3544
1 TraesCS3B01G133600 chr3B 116079790 116082503 2713 False 1043.333333 2778 92.301667 504 2613 3 chr3B.!!$F3 2109
2 TraesCS3B01G133600 chr3A 81481248 81484095 2847 True 1271.680000 3169 90.606600 294 3256 5 chr3A.!!$R1 2962
3 TraesCS3B01G133600 chr3A 81658402 81664806 6404 False 656.800000 2652 86.747800 139 2841 5 chr3A.!!$F1 2702
4 TraesCS3B01G133600 chr3D 70228278 70230412 2134 False 1568.500000 3033 92.764500 504 2576 2 chr3D.!!$F1 2072
5 TraesCS3B01G133600 chr3D 69905299 69908108 2809 True 1162.000000 2918 87.000000 617 3309 3 chr3D.!!$R2 2692
6 TraesCS3B01G133600 chr3D 69913356 69917376 4020 True 463.333333 736 91.898000 629 1615 3 chr3D.!!$R3 986
7 TraesCS3B01G133600 chr7D 29675302 29677001 1699 True 1897.000000 1897 87.155000 871 2538 1 chr7D.!!$R1 1667
8 TraesCS3B01G133600 chr7D 29696583 29698285 1702 True 1868.000000 1868 86.819000 869 2538 1 chr7D.!!$R2 1669
9 TraesCS3B01G133600 chr4A 5348707 5350231 1524 False 1238.000000 1238 81.597000 996 2538 1 chr4A.!!$F1 1542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 410 0.031817 ATTGGAGGGGATTGGCAAGG 60.032 55.0 5.96 0.0 0.00 3.61 F
686 4573 0.035820 GGTGGGCCTTTGATGACGTA 60.036 55.0 4.53 0.0 0.00 3.57 F
1722 9289 0.033011 TGAGGCTCCAGACCTACCTC 60.033 60.0 12.86 0.0 45.87 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 9289 1.452110 TCTTGTGATGGCCGATGTTG 58.548 50.0 0.00 0.0 0.00 3.33 R
1896 9484 1.897641 AGAAGCGATCGAACTCGTTC 58.102 50.0 21.57 10.4 40.73 3.95 R
3475 11327 0.101759 GCGCCGACACTGGTCTATTA 59.898 55.0 0.00 0.0 42.05 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.978824 CTCGACCCCCACATTCGT 59.021 61.111 0.00 0.00 34.35 3.85
18 19 1.295423 CTCGACCCCCACATTCGTT 59.705 57.895 0.00 0.00 34.35 3.85
19 20 0.739813 CTCGACCCCCACATTCGTTC 60.740 60.000 0.00 0.00 34.35 3.95
20 21 1.743995 CGACCCCCACATTCGTTCC 60.744 63.158 0.00 0.00 0.00 3.62
21 22 1.378119 GACCCCCACATTCGTTCCC 60.378 63.158 0.00 0.00 0.00 3.97
22 23 1.848886 GACCCCCACATTCGTTCCCT 61.849 60.000 0.00 0.00 0.00 4.20
23 24 1.077716 CCCCCACATTCGTTCCCTC 60.078 63.158 0.00 0.00 0.00 4.30
24 25 1.682849 CCCCACATTCGTTCCCTCA 59.317 57.895 0.00 0.00 0.00 3.86
25 26 0.392998 CCCCACATTCGTTCCCTCAG 60.393 60.000 0.00 0.00 0.00 3.35
26 27 0.324943 CCCACATTCGTTCCCTCAGT 59.675 55.000 0.00 0.00 0.00 3.41
27 28 1.271379 CCCACATTCGTTCCCTCAGTT 60.271 52.381 0.00 0.00 0.00 3.16
28 29 2.504367 CCACATTCGTTCCCTCAGTTT 58.496 47.619 0.00 0.00 0.00 2.66
29 30 2.226437 CCACATTCGTTCCCTCAGTTTG 59.774 50.000 0.00 0.00 0.00 2.93
30 31 3.138304 CACATTCGTTCCCTCAGTTTGA 58.862 45.455 0.00 0.00 0.00 2.69
31 32 3.563808 CACATTCGTTCCCTCAGTTTGAA 59.436 43.478 0.00 0.00 0.00 2.69
32 33 3.815401 ACATTCGTTCCCTCAGTTTGAAG 59.185 43.478 0.00 0.00 0.00 3.02
33 34 2.543777 TCGTTCCCTCAGTTTGAAGG 57.456 50.000 0.00 0.00 29.12 3.46
34 35 1.766496 TCGTTCCCTCAGTTTGAAGGT 59.234 47.619 0.00 0.00 30.08 3.50
35 36 1.873591 CGTTCCCTCAGTTTGAAGGTG 59.126 52.381 0.00 0.00 30.08 4.00
36 37 2.230660 GTTCCCTCAGTTTGAAGGTGG 58.769 52.381 0.00 0.00 30.08 4.61
37 38 1.814429 TCCCTCAGTTTGAAGGTGGA 58.186 50.000 0.00 0.00 30.08 4.02
38 39 1.420138 TCCCTCAGTTTGAAGGTGGAC 59.580 52.381 0.00 0.00 30.08 4.02
39 40 1.545651 CCCTCAGTTTGAAGGTGGACC 60.546 57.143 0.00 0.00 0.00 4.46
40 41 1.545651 CCTCAGTTTGAAGGTGGACCC 60.546 57.143 0.00 0.00 36.42 4.46
41 42 0.107831 TCAGTTTGAAGGTGGACCCG 59.892 55.000 0.00 0.00 38.74 5.28
42 43 0.179029 CAGTTTGAAGGTGGACCCGT 60.179 55.000 0.00 0.00 38.74 5.28
43 44 1.071071 CAGTTTGAAGGTGGACCCGTA 59.929 52.381 0.00 0.00 38.74 4.02
44 45 1.346722 AGTTTGAAGGTGGACCCGTAG 59.653 52.381 0.00 0.00 38.74 3.51
45 46 0.035739 TTTGAAGGTGGACCCGTAGC 59.964 55.000 0.00 0.00 38.74 3.58
46 47 0.834687 TTGAAGGTGGACCCGTAGCT 60.835 55.000 0.00 0.00 38.74 3.32
47 48 1.255667 TGAAGGTGGACCCGTAGCTC 61.256 60.000 0.00 0.00 38.74 4.09
48 49 1.957765 GAAGGTGGACCCGTAGCTCC 61.958 65.000 0.00 0.00 38.74 4.70
49 50 3.834799 GGTGGACCCGTAGCTCCG 61.835 72.222 0.00 0.00 0.00 4.63
50 51 4.509737 GTGGACCCGTAGCTCCGC 62.510 72.222 0.00 0.00 0.00 5.54
58 59 4.899239 GTAGCTCCGCCGCATGCT 62.899 66.667 17.13 6.91 38.05 3.79
59 60 3.223589 TAGCTCCGCCGCATGCTA 61.224 61.111 17.13 5.27 38.05 3.49
60 61 2.574018 TAGCTCCGCCGCATGCTAT 61.574 57.895 17.13 0.00 38.05 2.97
61 62 2.770132 TAGCTCCGCCGCATGCTATG 62.770 60.000 17.13 5.23 38.05 2.23
75 76 3.418684 TGCTATGCATCATGCTCATCT 57.581 42.857 11.84 0.00 45.31 2.90
76 77 3.074412 TGCTATGCATCATGCTCATCTG 58.926 45.455 11.84 0.00 45.31 2.90
77 78 2.159503 GCTATGCATCATGCTCATCTGC 60.160 50.000 11.84 3.30 45.31 4.26
78 79 2.278332 ATGCATCATGCTCATCTGCT 57.722 45.000 11.84 0.86 45.31 4.24
79 80 2.052782 TGCATCATGCTCATCTGCTT 57.947 45.000 11.84 0.00 45.31 3.91
80 81 1.676006 TGCATCATGCTCATCTGCTTG 59.324 47.619 11.84 0.00 45.31 4.01
81 82 1.600663 GCATCATGCTCATCTGCTTGC 60.601 52.381 1.02 0.00 40.96 4.01
82 83 1.001268 CATCATGCTCATCTGCTTGCC 60.001 52.381 0.00 0.00 37.81 4.52
83 84 0.750546 TCATGCTCATCTGCTTGCCC 60.751 55.000 0.00 0.00 37.81 5.36
84 85 1.455217 ATGCTCATCTGCTTGCCCC 60.455 57.895 0.00 0.00 0.00 5.80
85 86 3.207669 GCTCATCTGCTTGCCCCG 61.208 66.667 0.00 0.00 0.00 5.73
86 87 2.586245 CTCATCTGCTTGCCCCGA 59.414 61.111 0.00 0.00 0.00 5.14
87 88 1.817099 CTCATCTGCTTGCCCCGAC 60.817 63.158 0.00 0.00 0.00 4.79
88 89 3.197790 CATCTGCTTGCCCCGACG 61.198 66.667 0.00 0.00 0.00 5.12
89 90 4.473520 ATCTGCTTGCCCCGACGG 62.474 66.667 6.99 6.99 0.00 4.79
100 101 4.715523 CCGACGGCAACCCACCAT 62.716 66.667 0.00 0.00 0.00 3.55
101 102 3.124921 CGACGGCAACCCACCATC 61.125 66.667 0.00 0.00 0.00 3.51
102 103 3.124921 GACGGCAACCCACCATCG 61.125 66.667 0.00 0.00 0.00 3.84
105 106 4.740822 GGCAACCCACCATCGCCT 62.741 66.667 0.00 0.00 39.73 5.52
106 107 2.270850 GCAACCCACCATCGCCTA 59.729 61.111 0.00 0.00 0.00 3.93
107 108 1.819632 GCAACCCACCATCGCCTAG 60.820 63.158 0.00 0.00 0.00 3.02
108 109 1.153168 CAACCCACCATCGCCTAGG 60.153 63.158 3.67 3.67 0.00 3.02
109 110 3.043999 AACCCACCATCGCCTAGGC 62.044 63.158 24.75 24.75 37.85 3.93
110 111 4.256180 CCCACCATCGCCTAGGCC 62.256 72.222 28.09 10.55 37.98 5.19
111 112 3.479203 CCACCATCGCCTAGGCCA 61.479 66.667 28.09 17.01 37.98 5.36
112 113 2.109799 CACCATCGCCTAGGCCAG 59.890 66.667 28.09 15.15 37.98 4.85
113 114 3.866582 ACCATCGCCTAGGCCAGC 61.867 66.667 28.09 3.50 37.98 4.85
114 115 3.865383 CCATCGCCTAGGCCAGCA 61.865 66.667 28.09 9.92 37.98 4.41
115 116 2.590007 CATCGCCTAGGCCAGCAC 60.590 66.667 28.09 0.00 37.98 4.40
116 117 3.866582 ATCGCCTAGGCCAGCACC 61.867 66.667 28.09 0.00 37.98 5.01
118 119 4.537433 CGCCTAGGCCAGCACCTC 62.537 72.222 28.09 0.00 41.50 3.85
119 120 4.537433 GCCTAGGCCAGCACCTCG 62.537 72.222 24.19 0.00 41.50 4.63
120 121 3.077556 CCTAGGCCAGCACCTCGT 61.078 66.667 5.01 0.00 41.50 4.18
121 122 2.496817 CTAGGCCAGCACCTCGTC 59.503 66.667 5.01 0.00 41.50 4.20
122 123 3.075005 TAGGCCAGCACCTCGTCC 61.075 66.667 5.01 0.00 41.50 4.79
123 124 3.897681 TAGGCCAGCACCTCGTCCA 62.898 63.158 5.01 0.00 41.50 4.02
126 127 4.394712 CCAGCACCTCGTCCACCC 62.395 72.222 0.00 0.00 0.00 4.61
127 128 3.314331 CAGCACCTCGTCCACCCT 61.314 66.667 0.00 0.00 0.00 4.34
128 129 3.314331 AGCACCTCGTCCACCCTG 61.314 66.667 0.00 0.00 0.00 4.45
129 130 3.626924 GCACCTCGTCCACCCTGT 61.627 66.667 0.00 0.00 0.00 4.00
130 131 3.148084 CACCTCGTCCACCCTGTT 58.852 61.111 0.00 0.00 0.00 3.16
131 132 1.301716 CACCTCGTCCACCCTGTTG 60.302 63.158 0.00 0.00 0.00 3.33
132 133 1.764854 ACCTCGTCCACCCTGTTGT 60.765 57.895 0.00 0.00 0.00 3.32
133 134 1.004918 CCTCGTCCACCCTGTTGTC 60.005 63.158 0.00 0.00 0.00 3.18
134 135 1.745890 CTCGTCCACCCTGTTGTCA 59.254 57.895 0.00 0.00 0.00 3.58
135 136 0.105964 CTCGTCCACCCTGTTGTCAA 59.894 55.000 0.00 0.00 0.00 3.18
136 137 0.762418 TCGTCCACCCTGTTGTCAAT 59.238 50.000 0.00 0.00 0.00 2.57
137 138 0.874390 CGTCCACCCTGTTGTCAATG 59.126 55.000 0.00 0.00 0.00 2.82
147 148 2.221169 TGTTGTCAATGAGTCTGCCAC 58.779 47.619 0.00 0.00 0.00 5.01
149 150 2.618241 GTTGTCAATGAGTCTGCCACAA 59.382 45.455 0.00 0.00 0.00 3.33
169 170 6.219417 ACAAATGTGAAAAATCCTGTGTCA 57.781 33.333 0.00 0.00 0.00 3.58
170 171 6.819284 ACAAATGTGAAAAATCCTGTGTCAT 58.181 32.000 0.00 0.00 0.00 3.06
173 174 6.845758 ATGTGAAAAATCCTGTGTCATCAT 57.154 33.333 0.00 0.00 0.00 2.45
177 178 5.774184 TGAAAAATCCTGTGTCATCATTGGA 59.226 36.000 0.00 0.00 34.37 3.53
180 181 4.581309 ATCCTGTGTCATCATTGGAGTT 57.419 40.909 0.00 0.00 33.77 3.01
204 205 3.711059 CTCCATGCACTGGCCTCCC 62.711 68.421 3.32 0.00 45.52 4.30
220 221 4.489771 CCCCACGGGCTCCATCAC 62.490 72.222 0.00 0.00 35.35 3.06
223 224 4.489771 CACGGGCTCCATCACCCC 62.490 72.222 0.00 0.00 43.86 4.95
239 240 1.278537 CCCCTGATGTGCCCAAAATT 58.721 50.000 0.00 0.00 0.00 1.82
240 241 1.065998 CCCCTGATGTGCCCAAAATTG 60.066 52.381 0.00 0.00 0.00 2.32
259 260 2.165167 TGCTCTTTCTTGGCCTGAATG 58.835 47.619 3.32 10.90 0.00 2.67
260 261 1.475682 GCTCTTTCTTGGCCTGAATGG 59.524 52.381 3.32 5.46 39.35 3.16
261 262 2.881403 GCTCTTTCTTGGCCTGAATGGA 60.881 50.000 3.32 9.08 38.35 3.41
281 282 2.874694 CGATGTGCTGCCGGATTCG 61.875 63.158 5.05 0.00 0.00 3.34
292 293 3.186047 GGATTCGACGCCACACCG 61.186 66.667 0.00 0.00 0.00 4.94
301 302 2.584608 GCCACACCGCCTCATACT 59.415 61.111 0.00 0.00 0.00 2.12
314 315 3.800604 GCCTCATACTGAATCGAGGGAAC 60.801 52.174 6.44 0.00 44.40 3.62
322 323 0.391263 AATCGAGGGAACTGCGGAAC 60.391 55.000 0.00 0.00 44.43 3.62
359 360 5.560722 TGACAGATGAGTCCCACTTTAAA 57.439 39.130 0.00 0.00 37.73 1.52
362 363 3.691609 CAGATGAGTCCCACTTTAAAGGC 59.308 47.826 19.14 4.45 0.00 4.35
363 364 3.589288 AGATGAGTCCCACTTTAAAGGCT 59.411 43.478 19.14 8.71 0.00 4.58
364 365 3.876309 TGAGTCCCACTTTAAAGGCTT 57.124 42.857 19.14 0.00 0.00 4.35
365 366 3.486383 TGAGTCCCACTTTAAAGGCTTG 58.514 45.455 19.14 8.50 0.00 4.01
366 367 3.117663 TGAGTCCCACTTTAAAGGCTTGT 60.118 43.478 19.14 0.00 0.00 3.16
367 368 3.889538 GAGTCCCACTTTAAAGGCTTGTT 59.110 43.478 19.14 1.21 0.00 2.83
368 369 3.889538 AGTCCCACTTTAAAGGCTTGTTC 59.110 43.478 19.14 4.13 0.00 3.18
369 370 2.882137 TCCCACTTTAAAGGCTTGTTCG 59.118 45.455 19.14 0.00 0.00 3.95
370 371 2.030274 CCCACTTTAAAGGCTTGTTCGG 60.030 50.000 19.14 6.28 0.00 4.30
371 372 2.621526 CCACTTTAAAGGCTTGTTCGGT 59.378 45.455 19.14 0.00 0.00 4.69
372 373 3.067601 CCACTTTAAAGGCTTGTTCGGTT 59.932 43.478 19.14 0.00 0.00 4.44
373 374 4.276431 CCACTTTAAAGGCTTGTTCGGTTA 59.724 41.667 19.14 0.00 0.00 2.85
374 375 5.221087 CCACTTTAAAGGCTTGTTCGGTTAA 60.221 40.000 19.14 0.00 0.00 2.01
375 376 6.443792 CACTTTAAAGGCTTGTTCGGTTAAT 58.556 36.000 19.14 0.00 0.00 1.40
376 377 6.581166 CACTTTAAAGGCTTGTTCGGTTAATC 59.419 38.462 19.14 0.00 0.00 1.75
377 378 5.632244 TTAAAGGCTTGTTCGGTTAATCC 57.368 39.130 0.00 0.00 0.00 3.01
378 379 3.434940 AAGGCTTGTTCGGTTAATCCT 57.565 42.857 0.00 0.00 0.00 3.24
379 380 3.434940 AGGCTTGTTCGGTTAATCCTT 57.565 42.857 0.00 0.00 0.00 3.36
380 381 3.763057 AGGCTTGTTCGGTTAATCCTTT 58.237 40.909 0.00 0.00 0.00 3.11
381 382 3.756963 AGGCTTGTTCGGTTAATCCTTTC 59.243 43.478 0.00 0.00 0.00 2.62
382 383 3.119602 GGCTTGTTCGGTTAATCCTTTCC 60.120 47.826 0.00 0.00 0.00 3.13
383 384 3.119602 GCTTGTTCGGTTAATCCTTTCCC 60.120 47.826 0.00 0.00 0.00 3.97
384 385 3.791953 TGTTCGGTTAATCCTTTCCCA 57.208 42.857 0.00 0.00 0.00 4.37
385 386 4.101645 TGTTCGGTTAATCCTTTCCCAA 57.898 40.909 0.00 0.00 0.00 4.12
386 387 4.471548 TGTTCGGTTAATCCTTTCCCAAA 58.528 39.130 0.00 0.00 0.00 3.28
387 388 4.894114 TGTTCGGTTAATCCTTTCCCAAAA 59.106 37.500 0.00 0.00 0.00 2.44
388 389 5.010213 TGTTCGGTTAATCCTTTCCCAAAAG 59.990 40.000 0.00 0.00 41.36 2.27
398 399 2.621556 TTCCCAAAAGGATTGGAGGG 57.378 50.000 8.75 0.00 46.94 4.30
399 400 0.709992 TCCCAAAAGGATTGGAGGGG 59.290 55.000 8.75 0.00 40.93 4.79
400 401 0.709992 CCCAAAAGGATTGGAGGGGA 59.290 55.000 8.75 0.00 42.06 4.81
401 402 1.291939 CCCAAAAGGATTGGAGGGGAT 59.708 52.381 8.75 0.00 42.06 3.85
402 403 2.293118 CCCAAAAGGATTGGAGGGGATT 60.293 50.000 8.75 0.00 42.06 3.01
403 404 2.767960 CCAAAAGGATTGGAGGGGATTG 59.232 50.000 0.87 0.00 42.06 2.67
404 405 2.767960 CAAAAGGATTGGAGGGGATTGG 59.232 50.000 0.00 0.00 0.00 3.16
405 406 0.262876 AAGGATTGGAGGGGATTGGC 59.737 55.000 0.00 0.00 0.00 4.52
406 407 0.925720 AGGATTGGAGGGGATTGGCA 60.926 55.000 0.00 0.00 0.00 4.92
407 408 0.032217 GGATTGGAGGGGATTGGCAA 60.032 55.000 0.68 0.68 0.00 4.52
408 409 1.406903 GATTGGAGGGGATTGGCAAG 58.593 55.000 5.96 0.00 0.00 4.01
409 410 0.031817 ATTGGAGGGGATTGGCAAGG 60.032 55.000 5.96 0.00 0.00 3.61
410 411 1.145900 TTGGAGGGGATTGGCAAGGA 61.146 55.000 5.96 0.00 0.00 3.36
411 412 0.925720 TGGAGGGGATTGGCAAGGAT 60.926 55.000 5.96 0.00 0.00 3.24
412 413 0.262876 GGAGGGGATTGGCAAGGATT 59.737 55.000 5.96 0.00 0.00 3.01
449 450 9.457436 TTGACTTATAAGAGGTTTAAATCCACC 57.543 33.333 19.38 0.00 0.00 4.61
450 451 8.832735 TGACTTATAAGAGGTTTAAATCCACCT 58.167 33.333 19.38 0.00 46.78 4.00
457 458 4.157246 AGGTTTAAATCCACCTCAAACCC 58.843 43.478 10.14 0.00 46.02 4.11
458 459 3.259876 GGTTTAAATCCACCTCAAACCCC 59.740 47.826 3.66 0.00 41.38 4.95
459 460 4.157246 GTTTAAATCCACCTCAAACCCCT 58.843 43.478 0.00 0.00 0.00 4.79
460 461 4.479156 TTAAATCCACCTCAAACCCCTT 57.521 40.909 0.00 0.00 0.00 3.95
461 462 2.604912 AATCCACCTCAAACCCCTTC 57.395 50.000 0.00 0.00 0.00 3.46
462 463 1.455822 ATCCACCTCAAACCCCTTCA 58.544 50.000 0.00 0.00 0.00 3.02
463 464 1.227249 TCCACCTCAAACCCCTTCAA 58.773 50.000 0.00 0.00 0.00 2.69
464 465 1.786441 TCCACCTCAAACCCCTTCAAT 59.214 47.619 0.00 0.00 0.00 2.57
465 466 2.171003 CCACCTCAAACCCCTTCAATC 58.829 52.381 0.00 0.00 0.00 2.67
466 467 2.171003 CACCTCAAACCCCTTCAATCC 58.829 52.381 0.00 0.00 0.00 3.01
467 468 1.786441 ACCTCAAACCCCTTCAATCCA 59.214 47.619 0.00 0.00 0.00 3.41
468 469 2.171003 CCTCAAACCCCTTCAATCCAC 58.829 52.381 0.00 0.00 0.00 4.02
469 470 2.225117 CCTCAAACCCCTTCAATCCACT 60.225 50.000 0.00 0.00 0.00 4.00
470 471 3.084786 CTCAAACCCCTTCAATCCACTC 58.915 50.000 0.00 0.00 0.00 3.51
471 472 1.812571 CAAACCCCTTCAATCCACTCG 59.187 52.381 0.00 0.00 0.00 4.18
472 473 0.328258 AACCCCTTCAATCCACTCGG 59.672 55.000 0.00 0.00 0.00 4.63
481 482 2.577059 TCCACTCGGATTCGCACC 59.423 61.111 0.00 0.00 35.91 5.01
482 483 2.511600 CCACTCGGATTCGCACCC 60.512 66.667 0.00 0.00 36.13 4.61
483 484 2.264480 CACTCGGATTCGCACCCA 59.736 61.111 0.00 0.00 36.13 4.51
484 485 1.811266 CACTCGGATTCGCACCCAG 60.811 63.158 0.00 0.00 36.13 4.45
485 486 2.892425 CTCGGATTCGCACCCAGC 60.892 66.667 0.00 0.00 40.87 4.85
486 487 4.467084 TCGGATTCGCACCCAGCC 62.467 66.667 0.00 0.00 41.38 4.85
488 489 4.467084 GGATTCGCACCCAGCCGA 62.467 66.667 0.00 0.00 41.38 5.54
489 490 2.435938 GATTCGCACCCAGCCGAA 60.436 61.111 0.00 0.00 41.38 4.30
490 491 2.033448 ATTCGCACCCAGCCGAAA 59.967 55.556 0.00 0.00 41.38 3.46
491 492 1.582610 GATTCGCACCCAGCCGAAAA 61.583 55.000 0.00 0.00 41.38 2.29
492 493 1.175983 ATTCGCACCCAGCCGAAAAA 61.176 50.000 0.00 0.00 41.38 1.94
493 494 1.791103 TTCGCACCCAGCCGAAAAAG 61.791 55.000 0.00 0.00 41.38 2.27
494 495 2.650778 GCACCCAGCCGAAAAAGG 59.349 61.111 0.00 0.00 37.23 3.11
545 547 1.824852 GTTGGATGGACACCAAATCCC 59.175 52.381 0.00 2.84 46.77 3.85
568 570 3.303725 GCGTGAGTGCAAAAAGACACATA 60.304 43.478 0.00 0.00 39.30 2.29
598 634 0.684535 TCAACAATGACCCGCTCTGA 59.315 50.000 0.00 0.00 0.00 3.27
603 639 0.620556 AATGACCCGCTCTGACCATT 59.379 50.000 0.00 0.00 0.00 3.16
686 4573 0.035820 GGTGGGCCTTTGATGACGTA 60.036 55.000 4.53 0.00 0.00 3.57
687 4574 1.084289 GTGGGCCTTTGATGACGTAC 58.916 55.000 4.53 0.00 0.00 3.67
688 4575 0.390603 TGGGCCTTTGATGACGTACG 60.391 55.000 15.01 15.01 0.00 3.67
689 4576 0.390735 GGGCCTTTGATGACGTACGT 60.391 55.000 23.04 23.04 0.00 3.57
767 5248 5.822519 TCAATTGCACCCATGAAGTATACTC 59.177 40.000 5.70 0.86 0.00 2.59
768 5249 4.835284 TTGCACCCATGAAGTATACTCA 57.165 40.909 5.70 6.66 0.00 3.41
836 6872 5.413309 AAGAGTTTACTCATCCACCTCTG 57.587 43.478 12.10 0.00 45.21 3.35
842 6878 2.183679 ACTCATCCACCTCTGTTCTCC 58.816 52.381 0.00 0.00 0.00 3.71
977 7027 1.861982 ACACTTCACCGGCTATAGGT 58.138 50.000 0.00 0.00 43.97 3.08
978 7028 3.022557 ACACTTCACCGGCTATAGGTA 57.977 47.619 0.00 0.00 40.59 3.08
979 7029 2.957006 ACACTTCACCGGCTATAGGTAG 59.043 50.000 0.00 0.00 40.59 3.18
980 7030 2.957006 CACTTCACCGGCTATAGGTAGT 59.043 50.000 0.00 0.00 40.59 2.73
1314 7375 1.034356 TCTTCACGACCAACTTCGGA 58.966 50.000 0.00 0.00 43.58 4.55
1722 9289 0.033011 TGAGGCTCCAGACCTACCTC 60.033 60.000 12.86 0.00 45.87 3.85
1896 9484 2.901042 GAGGTAGGCAAGGACGGG 59.099 66.667 0.00 0.00 0.00 5.28
1911 9499 3.689411 GGGAACGAGTTCGATCGC 58.311 61.111 11.09 10.47 46.60 4.58
1995 9583 0.809385 CATGGTTCTTCTGGCTGCTG 59.191 55.000 0.00 0.00 0.00 4.41
2050 9641 3.363844 GAGCTCCGTGAGACCCTGC 62.364 68.421 0.87 0.00 0.00 4.85
2508 10111 0.400213 ACATGAAGGACGGGCTCAAA 59.600 50.000 0.00 0.00 0.00 2.69
2576 10193 3.026879 CTACGCCGATGCTCGCAG 61.027 66.667 0.00 0.35 38.82 5.18
2633 10250 8.651589 ACCATGCATATACATGTACTACTAGT 57.348 34.615 7.96 0.00 44.88 2.57
2634 10251 9.749340 ACCATGCATATACATGTACTACTAGTA 57.251 33.333 7.96 1.89 44.88 1.82
2722 10412 8.009622 TGTACAAGGAATAATGTGTATACGGA 57.990 34.615 0.00 0.00 0.00 4.69
2723 10413 8.139350 TGTACAAGGAATAATGTGTATACGGAG 58.861 37.037 0.00 0.00 0.00 4.63
2769 10499 9.791801 ACATGTGTATACAAAGGAATATATGCA 57.208 29.630 14.46 0.99 40.84 3.96
2780 10510 9.918630 CAAAGGAATATATGCAAATAAGAAGGG 57.081 33.333 0.00 0.00 0.00 3.95
2781 10511 9.881773 AAAGGAATATATGCAAATAAGAAGGGA 57.118 29.630 0.00 0.00 0.00 4.20
2782 10512 9.881773 AAGGAATATATGCAAATAAGAAGGGAA 57.118 29.630 0.00 0.00 0.00 3.97
2783 10513 9.881773 AGGAATATATGCAAATAAGAAGGGAAA 57.118 29.630 0.00 0.00 0.00 3.13
2788 10518 6.933514 ATGCAAATAAGAAGGGAAAAAGGA 57.066 33.333 0.00 0.00 0.00 3.36
2789 10519 6.739331 TGCAAATAAGAAGGGAAAAAGGAA 57.261 33.333 0.00 0.00 0.00 3.36
2790 10520 6.758254 TGCAAATAAGAAGGGAAAAAGGAAG 58.242 36.000 0.00 0.00 0.00 3.46
2791 10521 6.326323 TGCAAATAAGAAGGGAAAAAGGAAGT 59.674 34.615 0.00 0.00 0.00 3.01
2792 10522 7.507616 TGCAAATAAGAAGGGAAAAAGGAAGTA 59.492 33.333 0.00 0.00 0.00 2.24
2793 10523 8.364894 GCAAATAAGAAGGGAAAAAGGAAGTAA 58.635 33.333 0.00 0.00 0.00 2.24
2796 10526 9.877222 AATAAGAAGGGAAAAAGGAAGTAAAGA 57.123 29.630 0.00 0.00 0.00 2.52
2797 10527 7.825331 AAGAAGGGAAAAAGGAAGTAAAGAG 57.175 36.000 0.00 0.00 0.00 2.85
2798 10528 7.150447 AGAAGGGAAAAAGGAAGTAAAGAGA 57.850 36.000 0.00 0.00 0.00 3.10
2799 10529 7.583625 AGAAGGGAAAAAGGAAGTAAAGAGAA 58.416 34.615 0.00 0.00 0.00 2.87
2800 10530 8.228206 AGAAGGGAAAAAGGAAGTAAAGAGAAT 58.772 33.333 0.00 0.00 0.00 2.40
2801 10531 7.767250 AGGGAAAAAGGAAGTAAAGAGAATG 57.233 36.000 0.00 0.00 0.00 2.67
2802 10532 7.526918 AGGGAAAAAGGAAGTAAAGAGAATGA 58.473 34.615 0.00 0.00 0.00 2.57
2864 10613 6.940867 CACAGATTGATCAACTGGGATATGAT 59.059 38.462 27.07 11.88 37.25 2.45
2883 10632 2.143008 TTGCATGCAACTGAAAGCTG 57.857 45.000 28.80 0.00 37.60 4.24
2929 10678 7.121168 GCCTTATCTGTATATTTTGCCAGCATA 59.879 37.037 0.00 0.00 0.00 3.14
2980 10748 3.515630 CACGCACTCTCATAACACAGAT 58.484 45.455 0.00 0.00 0.00 2.90
3015 10783 1.835483 GCGCTGGCCGATAGATGTTG 61.835 60.000 0.00 0.00 40.02 3.33
3016 10784 0.530650 CGCTGGCCGATAGATGTTGT 60.531 55.000 0.00 0.00 40.02 3.32
3017 10785 1.269569 CGCTGGCCGATAGATGTTGTA 60.270 52.381 0.00 0.00 40.02 2.41
3197 11046 9.211485 CTTTTTGATTGGAAATAGAGCAAACAT 57.789 29.630 0.00 0.00 0.00 2.71
3204 11053 5.045213 TGGAAATAGAGCAAACATGGACCTA 60.045 40.000 0.00 0.00 0.00 3.08
3205 11054 5.297029 GGAAATAGAGCAAACATGGACCTAC 59.703 44.000 0.00 0.00 0.00 3.18
3206 11055 5.435686 AATAGAGCAAACATGGACCTACA 57.564 39.130 0.00 0.00 0.00 2.74
3207 11056 3.788227 AGAGCAAACATGGACCTACAA 57.212 42.857 0.00 0.00 0.00 2.41
3208 11057 3.679389 AGAGCAAACATGGACCTACAAG 58.321 45.455 0.00 0.00 0.00 3.16
3209 11058 2.749621 GAGCAAACATGGACCTACAAGG 59.250 50.000 0.00 0.00 42.49 3.61
3210 11059 2.375174 AGCAAACATGGACCTACAAGGA 59.625 45.455 0.00 0.00 37.67 3.36
3211 11060 2.488153 GCAAACATGGACCTACAAGGAC 59.512 50.000 0.00 0.00 37.67 3.85
3274 11126 2.821969 CAACCTGCAAAGAAGGCTACAT 59.178 45.455 0.00 0.00 38.48 2.29
3281 11133 0.107654 AAGAAGGCTACATGGACCGC 60.108 55.000 0.00 0.00 0.00 5.68
3284 11136 2.876368 AAGGCTACATGGACCGCTGC 62.876 60.000 0.00 0.00 0.00 5.25
3285 11137 2.897350 GCTACATGGACCGCTGCC 60.897 66.667 0.00 0.00 0.00 4.85
3303 11155 3.531538 TGCCTGAATCCTCGAACAATAC 58.468 45.455 0.00 0.00 0.00 1.89
3305 11157 3.938963 GCCTGAATCCTCGAACAATACAA 59.061 43.478 0.00 0.00 0.00 2.41
3306 11158 4.034510 GCCTGAATCCTCGAACAATACAAG 59.965 45.833 0.00 0.00 0.00 3.16
3307 11159 5.419542 CCTGAATCCTCGAACAATACAAGA 58.580 41.667 0.00 0.00 0.00 3.02
3308 11160 5.521735 CCTGAATCCTCGAACAATACAAGAG 59.478 44.000 0.00 0.00 0.00 2.85
3309 11161 6.037786 TGAATCCTCGAACAATACAAGAGT 57.962 37.500 0.00 0.00 0.00 3.24
3310 11162 5.869344 TGAATCCTCGAACAATACAAGAGTG 59.131 40.000 0.00 0.00 0.00 3.51
3311 11163 4.866508 TCCTCGAACAATACAAGAGTGT 57.133 40.909 0.00 0.00 38.19 3.55
3312 11164 5.970317 TCCTCGAACAATACAAGAGTGTA 57.030 39.130 0.00 0.00 44.29 2.90
3313 11165 5.950883 TCCTCGAACAATACAAGAGTGTAG 58.049 41.667 0.00 0.00 43.42 2.74
3314 11166 5.475909 TCCTCGAACAATACAAGAGTGTAGT 59.524 40.000 0.00 0.00 43.42 2.73
3315 11167 6.656270 TCCTCGAACAATACAAGAGTGTAGTA 59.344 38.462 0.00 0.00 43.42 1.82
3316 11168 6.746364 CCTCGAACAATACAAGAGTGTAGTAC 59.254 42.308 0.00 0.00 43.42 2.73
3317 11169 6.615088 TCGAACAATACAAGAGTGTAGTACC 58.385 40.000 0.00 0.00 43.42 3.34
3318 11170 5.510674 CGAACAATACAAGAGTGTAGTACCG 59.489 44.000 0.00 0.00 43.42 4.02
3319 11171 5.972107 ACAATACAAGAGTGTAGTACCGT 57.028 39.130 0.00 0.00 43.42 4.83
3320 11172 5.706916 ACAATACAAGAGTGTAGTACCGTG 58.293 41.667 0.00 0.00 43.42 4.94
3321 11173 2.719426 ACAAGAGTGTAGTACCGTGC 57.281 50.000 0.00 0.00 35.72 5.34
3322 11174 1.958579 ACAAGAGTGTAGTACCGTGCA 59.041 47.619 0.00 0.00 35.72 4.57
3323 11175 2.363038 ACAAGAGTGTAGTACCGTGCAA 59.637 45.455 0.00 0.00 35.72 4.08
3324 11176 2.719426 AGAGTGTAGTACCGTGCAAC 57.281 50.000 0.00 0.00 0.00 4.17
3325 11177 1.271656 AGAGTGTAGTACCGTGCAACC 59.728 52.381 0.00 0.00 0.00 3.77
3326 11178 1.271656 GAGTGTAGTACCGTGCAACCT 59.728 52.381 0.00 0.00 0.00 3.50
3327 11179 1.271656 AGTGTAGTACCGTGCAACCTC 59.728 52.381 0.00 0.00 0.00 3.85
3328 11180 1.000060 GTGTAGTACCGTGCAACCTCA 60.000 52.381 0.00 0.00 0.00 3.86
3329 11181 1.271379 TGTAGTACCGTGCAACCTCAG 59.729 52.381 0.00 0.00 0.00 3.35
3330 11182 1.542915 GTAGTACCGTGCAACCTCAGA 59.457 52.381 0.00 0.00 0.00 3.27
3331 11183 1.045407 AGTACCGTGCAACCTCAGAA 58.955 50.000 0.00 0.00 0.00 3.02
3332 11184 1.414919 AGTACCGTGCAACCTCAGAAA 59.585 47.619 0.00 0.00 0.00 2.52
3333 11185 2.158871 AGTACCGTGCAACCTCAGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
3334 11186 1.757682 ACCGTGCAACCTCAGAAAAA 58.242 45.000 0.00 0.00 0.00 1.94
3335 11187 2.306847 ACCGTGCAACCTCAGAAAAAT 58.693 42.857 0.00 0.00 0.00 1.82
3336 11188 2.693074 ACCGTGCAACCTCAGAAAAATT 59.307 40.909 0.00 0.00 0.00 1.82
3337 11189 3.132111 ACCGTGCAACCTCAGAAAAATTT 59.868 39.130 0.00 0.00 0.00 1.82
3338 11190 3.490526 CCGTGCAACCTCAGAAAAATTTG 59.509 43.478 0.00 0.00 0.00 2.32
3339 11191 3.490526 CGTGCAACCTCAGAAAAATTTGG 59.509 43.478 0.00 0.00 0.00 3.28
3340 11192 4.692228 GTGCAACCTCAGAAAAATTTGGA 58.308 39.130 0.00 0.00 0.00 3.53
3341 11193 4.746611 GTGCAACCTCAGAAAAATTTGGAG 59.253 41.667 0.00 0.00 0.00 3.86
3342 11194 3.742882 GCAACCTCAGAAAAATTTGGAGC 59.257 43.478 0.00 0.00 0.00 4.70
3343 11195 4.740334 GCAACCTCAGAAAAATTTGGAGCA 60.740 41.667 0.00 0.00 0.00 4.26
3344 11196 5.544650 CAACCTCAGAAAAATTTGGAGCAT 58.455 37.500 0.00 0.00 0.00 3.79
3345 11197 5.813513 ACCTCAGAAAAATTTGGAGCATT 57.186 34.783 0.00 0.00 0.00 3.56
3346 11198 6.178607 ACCTCAGAAAAATTTGGAGCATTT 57.821 33.333 0.00 0.00 0.00 2.32
3347 11199 6.594744 ACCTCAGAAAAATTTGGAGCATTTT 58.405 32.000 0.00 0.00 35.72 1.82
3348 11200 7.056006 ACCTCAGAAAAATTTGGAGCATTTTT 58.944 30.769 4.59 4.59 43.41 1.94
3355 11207 8.785468 AAAAATTTGGAGCATTTTTCGATTTG 57.215 26.923 0.00 0.00 38.79 2.32
3356 11208 7.495135 AAATTTGGAGCATTTTTCGATTTGT 57.505 28.000 0.00 0.00 0.00 2.83
3357 11209 5.903764 TTTGGAGCATTTTTCGATTTGTG 57.096 34.783 0.00 0.00 0.00 3.33
3358 11210 4.582701 TGGAGCATTTTTCGATTTGTGT 57.417 36.364 0.00 0.00 0.00 3.72
3359 11211 4.297510 TGGAGCATTTTTCGATTTGTGTG 58.702 39.130 0.00 0.00 0.00 3.82
3360 11212 4.202101 TGGAGCATTTTTCGATTTGTGTGT 60.202 37.500 0.00 0.00 0.00 3.72
3361 11213 4.148696 GGAGCATTTTTCGATTTGTGTGTG 59.851 41.667 0.00 0.00 0.00 3.82
3362 11214 4.681744 AGCATTTTTCGATTTGTGTGTGT 58.318 34.783 0.00 0.00 0.00 3.72
3363 11215 5.108517 AGCATTTTTCGATTTGTGTGTGTT 58.891 33.333 0.00 0.00 0.00 3.32
3364 11216 6.269315 AGCATTTTTCGATTTGTGTGTGTTA 58.731 32.000 0.00 0.00 0.00 2.41
3365 11217 6.922957 AGCATTTTTCGATTTGTGTGTGTTAT 59.077 30.769 0.00 0.00 0.00 1.89
3366 11218 7.114811 AGCATTTTTCGATTTGTGTGTGTTATC 59.885 33.333 0.00 0.00 0.00 1.75
3367 11219 7.619161 GCATTTTTCGATTTGTGTGTGTTATCC 60.619 37.037 0.00 0.00 0.00 2.59
3368 11220 6.627395 TTTTCGATTTGTGTGTGTTATCCT 57.373 33.333 0.00 0.00 0.00 3.24
3369 11221 6.627395 TTTCGATTTGTGTGTGTTATCCTT 57.373 33.333 0.00 0.00 0.00 3.36
3370 11222 5.605564 TCGATTTGTGTGTGTTATCCTTG 57.394 39.130 0.00 0.00 0.00 3.61
3371 11223 4.083537 TCGATTTGTGTGTGTTATCCTTGC 60.084 41.667 0.00 0.00 0.00 4.01
3372 11224 3.617540 TTTGTGTGTGTTATCCTTGCG 57.382 42.857 0.00 0.00 0.00 4.85
3373 11225 0.871722 TGTGTGTGTTATCCTTGCGC 59.128 50.000 0.00 0.00 0.00 6.09
3374 11226 0.871722 GTGTGTGTTATCCTTGCGCA 59.128 50.000 5.66 5.66 0.00 6.09
3375 11227 1.135972 GTGTGTGTTATCCTTGCGCAG 60.136 52.381 11.31 4.92 0.00 5.18
3376 11228 0.447801 GTGTGTTATCCTTGCGCAGG 59.552 55.000 13.36 13.36 45.64 4.85
3377 11229 0.676466 TGTGTTATCCTTGCGCAGGG 60.676 55.000 31.27 31.27 44.12 4.45
3378 11230 1.077787 TGTTATCCTTGCGCAGGGG 60.078 57.895 34.94 27.37 44.12 4.79
3379 11231 2.124320 TTATCCTTGCGCAGGGGC 60.124 61.111 34.94 0.86 44.12 5.80
3380 11232 3.714487 TTATCCTTGCGCAGGGGCC 62.714 63.158 34.94 0.00 44.12 5.80
3388 11240 2.203394 CGCAGGGGCCATGCTAAT 60.203 61.111 36.49 0.00 41.61 1.73
3389 11241 2.263741 CGCAGGGGCCATGCTAATC 61.264 63.158 36.49 11.88 41.61 1.75
3390 11242 1.152368 GCAGGGGCCATGCTAATCT 59.848 57.895 33.99 1.91 40.59 2.40
3391 11243 0.468771 GCAGGGGCCATGCTAATCTT 60.469 55.000 33.99 0.00 40.59 2.40
3392 11244 2.031097 GCAGGGGCCATGCTAATCTTT 61.031 52.381 33.99 0.00 40.59 2.52
3393 11245 2.391678 CAGGGGCCATGCTAATCTTTT 58.608 47.619 4.75 0.00 0.00 2.27
3394 11246 2.767960 CAGGGGCCATGCTAATCTTTTT 59.232 45.455 4.75 0.00 0.00 1.94
3419 11271 9.964303 TTTGTATCATTCCAATTTTATCGGATG 57.036 29.630 0.00 0.00 0.00 3.51
3420 11272 8.916628 TGTATCATTCCAATTTTATCGGATGA 57.083 30.769 0.00 0.00 0.00 2.92
3421 11273 8.783093 TGTATCATTCCAATTTTATCGGATGAC 58.217 33.333 0.00 0.00 0.00 3.06
3422 11274 6.633500 TCATTCCAATTTTATCGGATGACC 57.367 37.500 0.00 0.00 0.00 4.02
3423 11275 5.534654 TCATTCCAATTTTATCGGATGACCC 59.465 40.000 0.00 0.00 0.00 4.46
3424 11276 3.827722 TCCAATTTTATCGGATGACCCC 58.172 45.455 0.00 0.00 0.00 4.95
3451 11303 2.953824 GCTCTAGCTGCTGCGACG 60.954 66.667 13.43 2.97 45.42 5.12
3452 11304 2.278466 CTCTAGCTGCTGCGACGG 60.278 66.667 13.43 2.36 45.42 4.79
3453 11305 3.764810 CTCTAGCTGCTGCGACGGG 62.765 68.421 13.43 0.00 45.42 5.28
3454 11306 4.135153 CTAGCTGCTGCGACGGGT 62.135 66.667 13.43 0.00 45.42 5.28
3455 11307 3.649277 CTAGCTGCTGCGACGGGTT 62.649 63.158 13.43 0.00 45.42 4.11
3456 11308 3.234630 TAGCTGCTGCGACGGGTTT 62.235 57.895 13.43 0.00 45.42 3.27
3457 11309 1.879737 TAGCTGCTGCGACGGGTTTA 61.880 55.000 13.43 0.00 45.42 2.01
3458 11310 2.106683 GCTGCTGCGACGGGTTTAT 61.107 57.895 0.00 0.00 0.00 1.40
3459 11311 0.808453 GCTGCTGCGACGGGTTTATA 60.808 55.000 0.00 0.00 0.00 0.98
3460 11312 1.647346 CTGCTGCGACGGGTTTATAA 58.353 50.000 0.00 0.00 0.00 0.98
3461 11313 2.004017 CTGCTGCGACGGGTTTATAAA 58.996 47.619 0.00 0.00 0.00 1.40
3462 11314 1.733360 TGCTGCGACGGGTTTATAAAC 59.267 47.619 18.30 18.30 38.17 2.01
3463 11315 2.004733 GCTGCGACGGGTTTATAAACT 58.995 47.619 23.89 8.09 38.89 2.66
3464 11316 3.189285 GCTGCGACGGGTTTATAAACTA 58.811 45.455 23.89 5.55 38.89 2.24
3465 11317 3.244579 GCTGCGACGGGTTTATAAACTAG 59.755 47.826 23.89 19.74 38.89 2.57
3466 11318 4.427312 CTGCGACGGGTTTATAAACTAGT 58.573 43.478 23.89 22.14 38.89 2.57
3467 11319 5.574891 TGCGACGGGTTTATAAACTAGTA 57.425 39.130 23.89 10.48 38.89 1.82
3468 11320 5.339990 TGCGACGGGTTTATAAACTAGTAC 58.660 41.667 23.89 18.30 38.89 2.73
3469 11321 5.125417 TGCGACGGGTTTATAAACTAGTACT 59.875 40.000 23.89 0.00 38.89 2.73
3470 11322 6.036470 GCGACGGGTTTATAAACTAGTACTT 58.964 40.000 23.89 7.10 38.89 2.24
3471 11323 6.197282 GCGACGGGTTTATAAACTAGTACTTC 59.803 42.308 23.89 12.64 38.89 3.01
3472 11324 7.475840 CGACGGGTTTATAAACTAGTACTTCT 58.524 38.462 23.89 5.47 38.89 2.85
3473 11325 7.970614 CGACGGGTTTATAAACTAGTACTTCTT 59.029 37.037 23.89 4.90 38.89 2.52
3474 11326 9.645059 GACGGGTTTATAAACTAGTACTTCTTT 57.355 33.333 23.89 1.71 38.89 2.52
3490 11342 8.027771 AGTACTTCTTTTAATAGACCAGTGTCG 58.972 37.037 9.33 0.00 46.51 4.35
3491 11343 6.164176 ACTTCTTTTAATAGACCAGTGTCGG 58.836 40.000 0.00 0.00 46.51 4.79
3492 11344 4.501071 TCTTTTAATAGACCAGTGTCGGC 58.499 43.478 0.00 0.00 46.51 5.54
3493 11345 2.572191 TTAATAGACCAGTGTCGGCG 57.428 50.000 0.00 0.00 46.51 6.46
3494 11346 0.101759 TAATAGACCAGTGTCGGCGC 59.898 55.000 0.00 0.00 46.51 6.53
3495 11347 2.573609 AATAGACCAGTGTCGGCGCC 62.574 60.000 19.07 19.07 46.51 6.53
3510 11362 4.821589 GCCGGCGGGAGACAAGAG 62.822 72.222 29.48 0.00 38.29 2.85
3511 11363 4.148825 CCGGCGGGAGACAAGAGG 62.149 72.222 20.56 0.00 38.29 3.69
3512 11364 3.068691 CGGCGGGAGACAAGAGGA 61.069 66.667 0.00 0.00 38.29 3.71
3513 11365 2.646175 CGGCGGGAGACAAGAGGAA 61.646 63.158 0.00 0.00 38.29 3.36
3514 11366 1.079057 GGCGGGAGACAAGAGGAAC 60.079 63.158 0.00 0.00 38.26 3.62
3515 11367 1.079057 GCGGGAGACAAGAGGAACC 60.079 63.158 0.00 0.00 0.00 3.62
3516 11368 1.545706 GCGGGAGACAAGAGGAACCT 61.546 60.000 0.00 0.00 0.00 3.50
3517 11369 1.848652 CGGGAGACAAGAGGAACCTA 58.151 55.000 0.00 0.00 0.00 3.08
3518 11370 1.751924 CGGGAGACAAGAGGAACCTAG 59.248 57.143 0.00 0.00 0.00 3.02
3519 11371 1.483004 GGGAGACAAGAGGAACCTAGC 59.517 57.143 0.00 0.00 0.00 3.42
3520 11372 2.180276 GGAGACAAGAGGAACCTAGCA 58.820 52.381 0.00 0.00 0.00 3.49
3521 11373 2.093921 GGAGACAAGAGGAACCTAGCAC 60.094 54.545 0.00 0.00 0.00 4.40
3522 11374 1.546476 AGACAAGAGGAACCTAGCACG 59.454 52.381 0.00 0.00 0.00 5.34
3523 11375 0.608640 ACAAGAGGAACCTAGCACGG 59.391 55.000 0.00 0.00 0.00 4.94
3524 11376 0.741221 CAAGAGGAACCTAGCACGGC 60.741 60.000 0.00 0.00 0.00 5.68
3525 11377 0.905337 AAGAGGAACCTAGCACGGCT 60.905 55.000 3.87 3.87 43.41 5.52
3526 11378 1.153549 GAGGAACCTAGCACGGCTG 60.154 63.158 8.44 0.00 40.10 4.85
3527 11379 2.125106 GGAACCTAGCACGGCTGG 60.125 66.667 8.44 5.61 40.10 4.85
3532 11384 2.104331 CTAGCACGGCTGGGTACG 59.896 66.667 8.44 0.00 40.10 3.67
3533 11385 2.361483 TAGCACGGCTGGGTACGA 60.361 61.111 8.44 0.00 40.10 3.43
3534 11386 2.337749 CTAGCACGGCTGGGTACGAG 62.338 65.000 8.44 0.00 40.10 4.18
3541 11393 2.103143 CTGGGTACGAGCGAGCAG 59.897 66.667 0.00 0.00 0.00 4.24
3542 11394 2.675423 TGGGTACGAGCGAGCAGT 60.675 61.111 0.00 0.00 0.00 4.40
3543 11395 2.202623 GGGTACGAGCGAGCAGTG 60.203 66.667 0.00 0.00 0.00 3.66
3544 11396 2.881352 GGTACGAGCGAGCAGTGC 60.881 66.667 7.13 7.13 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.739813 GAACGAATGTGGGGGTCGAG 60.740 60.000 0.00 0.00 38.16 4.04
1 2 1.294138 GAACGAATGTGGGGGTCGA 59.706 57.895 0.00 0.00 38.16 4.20
2 3 1.743995 GGAACGAATGTGGGGGTCG 60.744 63.158 0.00 0.00 40.56 4.79
3 4 1.378119 GGGAACGAATGTGGGGGTC 60.378 63.158 0.00 0.00 0.00 4.46
4 5 1.848886 GAGGGAACGAATGTGGGGGT 61.849 60.000 0.00 0.00 0.00 4.95
5 6 1.077716 GAGGGAACGAATGTGGGGG 60.078 63.158 0.00 0.00 0.00 5.40
6 7 0.392998 CTGAGGGAACGAATGTGGGG 60.393 60.000 0.00 0.00 0.00 4.96
7 8 0.324943 ACTGAGGGAACGAATGTGGG 59.675 55.000 0.00 0.00 0.00 4.61
8 9 2.185004 AACTGAGGGAACGAATGTGG 57.815 50.000 0.00 0.00 0.00 4.17
9 10 3.138304 TCAAACTGAGGGAACGAATGTG 58.862 45.455 0.00 0.00 0.00 3.21
10 11 3.485463 TCAAACTGAGGGAACGAATGT 57.515 42.857 0.00 0.00 0.00 2.71
11 12 3.189287 CCTTCAAACTGAGGGAACGAATG 59.811 47.826 0.00 0.00 45.53 2.67
12 13 3.181443 ACCTTCAAACTGAGGGAACGAAT 60.181 43.478 11.41 0.00 45.53 3.34
13 14 2.171870 ACCTTCAAACTGAGGGAACGAA 59.828 45.455 11.41 0.00 45.53 3.85
14 15 1.766496 ACCTTCAAACTGAGGGAACGA 59.234 47.619 11.41 0.00 45.53 3.85
15 16 1.873591 CACCTTCAAACTGAGGGAACG 59.126 52.381 11.41 0.00 45.53 3.95
16 17 2.158667 TCCACCTTCAAACTGAGGGAAC 60.159 50.000 11.41 0.00 45.53 3.62
17 18 2.131854 TCCACCTTCAAACTGAGGGAA 58.868 47.619 11.41 0.00 45.53 3.97
18 19 1.420138 GTCCACCTTCAAACTGAGGGA 59.580 52.381 11.41 0.00 45.53 4.20
20 21 1.545651 GGGTCCACCTTCAAACTGAGG 60.546 57.143 0.00 0.00 35.85 3.86
21 22 1.878102 CGGGTCCACCTTCAAACTGAG 60.878 57.143 0.00 0.00 36.97 3.35
22 23 0.107831 CGGGTCCACCTTCAAACTGA 59.892 55.000 0.00 0.00 36.97 3.41
23 24 0.179029 ACGGGTCCACCTTCAAACTG 60.179 55.000 0.00 0.00 36.97 3.16
24 25 1.346722 CTACGGGTCCACCTTCAAACT 59.653 52.381 0.00 0.00 36.97 2.66
25 26 1.804601 CTACGGGTCCACCTTCAAAC 58.195 55.000 0.00 0.00 36.97 2.93
26 27 0.035739 GCTACGGGTCCACCTTCAAA 59.964 55.000 0.00 0.00 36.97 2.69
27 28 0.834687 AGCTACGGGTCCACCTTCAA 60.835 55.000 0.00 0.00 36.97 2.69
28 29 1.229082 AGCTACGGGTCCACCTTCA 60.229 57.895 0.00 0.00 36.97 3.02
29 30 1.516423 GAGCTACGGGTCCACCTTC 59.484 63.158 0.00 0.00 36.97 3.46
30 31 3.709567 GAGCTACGGGTCCACCTT 58.290 61.111 0.00 0.00 36.97 3.50
61 62 1.600663 GCAAGCAGATGAGCATGATGC 60.601 52.381 9.89 9.89 45.46 3.91
62 63 1.001268 GGCAAGCAGATGAGCATGATG 60.001 52.381 0.00 0.00 35.37 3.07
63 64 1.319541 GGCAAGCAGATGAGCATGAT 58.680 50.000 0.00 0.00 35.37 2.45
64 65 0.750546 GGGCAAGCAGATGAGCATGA 60.751 55.000 0.00 0.00 35.37 3.07
65 66 1.734137 GGGCAAGCAGATGAGCATG 59.266 57.895 0.00 0.00 36.38 4.06
66 67 1.455217 GGGGCAAGCAGATGAGCAT 60.455 57.895 0.00 0.00 36.85 3.79
67 68 2.044650 GGGGCAAGCAGATGAGCA 60.045 61.111 0.00 0.00 36.85 4.26
68 69 3.207669 CGGGGCAAGCAGATGAGC 61.208 66.667 0.00 0.00 0.00 4.26
69 70 1.817099 GTCGGGGCAAGCAGATGAG 60.817 63.158 0.00 0.00 0.00 2.90
70 71 2.268920 GTCGGGGCAAGCAGATGA 59.731 61.111 0.00 0.00 0.00 2.92
71 72 3.197790 CGTCGGGGCAAGCAGATG 61.198 66.667 0.00 0.00 0.00 2.90
72 73 4.473520 CCGTCGGGGCAAGCAGAT 62.474 66.667 2.34 0.00 0.00 2.90
83 84 4.715523 ATGGTGGGTTGCCGTCGG 62.716 66.667 6.99 6.99 0.00 4.79
84 85 3.124921 GATGGTGGGTTGCCGTCG 61.125 66.667 0.00 0.00 33.03 5.12
85 86 3.124921 CGATGGTGGGTTGCCGTC 61.125 66.667 0.00 0.00 38.36 4.79
88 89 3.338275 TAGGCGATGGTGGGTTGCC 62.338 63.158 0.00 0.00 44.94 4.52
89 90 1.819632 CTAGGCGATGGTGGGTTGC 60.820 63.158 0.00 0.00 0.00 4.17
90 91 1.153168 CCTAGGCGATGGTGGGTTG 60.153 63.158 0.00 0.00 0.00 3.77
91 92 3.043999 GCCTAGGCGATGGTGGGTT 62.044 63.158 20.16 0.00 0.00 4.11
92 93 3.480133 GCCTAGGCGATGGTGGGT 61.480 66.667 20.16 0.00 0.00 4.51
93 94 4.256180 GGCCTAGGCGATGGTGGG 62.256 72.222 27.24 0.00 43.06 4.61
94 95 3.466791 CTGGCCTAGGCGATGGTGG 62.467 68.421 27.24 7.62 43.06 4.61
95 96 2.109799 CTGGCCTAGGCGATGGTG 59.890 66.667 27.24 8.01 43.06 4.17
96 97 3.866582 GCTGGCCTAGGCGATGGT 61.867 66.667 27.24 0.00 43.06 3.55
97 98 3.865383 TGCTGGCCTAGGCGATGG 61.865 66.667 27.24 13.76 43.06 3.51
98 99 2.590007 GTGCTGGCCTAGGCGATG 60.590 66.667 27.24 19.23 43.06 3.84
99 100 3.866582 GGTGCTGGCCTAGGCGAT 61.867 66.667 27.24 0.00 43.06 4.58
101 102 4.537433 GAGGTGCTGGCCTAGGCG 62.537 72.222 27.24 15.69 43.06 5.52
102 103 4.537433 CGAGGTGCTGGCCTAGGC 62.537 72.222 26.55 26.55 39.34 3.93
103 104 3.077556 ACGAGGTGCTGGCCTAGG 61.078 66.667 3.67 3.67 39.34 3.02
104 105 2.496817 GACGAGGTGCTGGCCTAG 59.503 66.667 3.32 0.34 39.34 3.02
105 106 3.075005 GGACGAGGTGCTGGCCTA 61.075 66.667 3.32 0.00 39.34 3.93
109 110 4.394712 GGGTGGACGAGGTGCTGG 62.395 72.222 0.00 0.00 0.00 4.85
110 111 3.314331 AGGGTGGACGAGGTGCTG 61.314 66.667 0.00 0.00 0.00 4.41
111 112 3.314331 CAGGGTGGACGAGGTGCT 61.314 66.667 0.00 0.00 0.00 4.40
112 113 3.178540 AACAGGGTGGACGAGGTGC 62.179 63.158 0.00 0.00 0.00 5.01
113 114 1.301716 CAACAGGGTGGACGAGGTG 60.302 63.158 0.00 0.00 0.00 4.00
114 115 1.755393 GACAACAGGGTGGACGAGGT 61.755 60.000 0.00 0.00 0.00 3.85
115 116 1.004918 GACAACAGGGTGGACGAGG 60.005 63.158 0.00 0.00 0.00 4.63
116 117 0.105964 TTGACAACAGGGTGGACGAG 59.894 55.000 0.00 0.00 0.00 4.18
117 118 0.762418 ATTGACAACAGGGTGGACGA 59.238 50.000 0.00 0.00 0.00 4.20
118 119 0.874390 CATTGACAACAGGGTGGACG 59.126 55.000 0.00 0.00 0.00 4.79
119 120 2.154462 CTCATTGACAACAGGGTGGAC 58.846 52.381 0.00 0.00 0.00 4.02
120 121 1.774254 ACTCATTGACAACAGGGTGGA 59.226 47.619 0.00 0.00 0.00 4.02
121 122 2.154462 GACTCATTGACAACAGGGTGG 58.846 52.381 0.01 0.00 0.00 4.61
122 123 2.810274 CAGACTCATTGACAACAGGGTG 59.190 50.000 0.01 0.00 0.00 4.61
123 124 2.811873 GCAGACTCATTGACAACAGGGT 60.812 50.000 0.00 0.00 0.00 4.34
124 125 1.808945 GCAGACTCATTGACAACAGGG 59.191 52.381 0.00 0.00 0.00 4.45
125 126 1.808945 GGCAGACTCATTGACAACAGG 59.191 52.381 0.00 0.00 0.00 4.00
126 127 2.225019 GTGGCAGACTCATTGACAACAG 59.775 50.000 0.00 0.00 34.84 3.16
127 128 2.221169 GTGGCAGACTCATTGACAACA 58.779 47.619 0.00 0.00 34.84 3.33
128 129 2.221169 TGTGGCAGACTCATTGACAAC 58.779 47.619 0.00 0.00 34.84 3.32
129 130 2.636647 TGTGGCAGACTCATTGACAA 57.363 45.000 0.00 0.00 34.84 3.18
130 131 2.636647 TTGTGGCAGACTCATTGACA 57.363 45.000 0.00 0.00 0.00 3.58
131 132 3.254166 ACATTTGTGGCAGACTCATTGAC 59.746 43.478 0.00 0.00 0.00 3.18
132 133 3.253921 CACATTTGTGGCAGACTCATTGA 59.746 43.478 2.69 0.00 42.10 2.57
133 134 3.253921 TCACATTTGTGGCAGACTCATTG 59.746 43.478 10.60 0.00 45.65 2.82
134 135 3.489355 TCACATTTGTGGCAGACTCATT 58.511 40.909 10.60 0.00 45.65 2.57
135 136 3.144657 TCACATTTGTGGCAGACTCAT 57.855 42.857 10.60 0.00 45.65 2.90
136 137 2.636647 TCACATTTGTGGCAGACTCA 57.363 45.000 10.60 0.00 45.65 3.41
137 138 3.988379 TTTCACATTTGTGGCAGACTC 57.012 42.857 10.60 0.00 45.65 3.36
147 148 6.924612 TGATGACACAGGATTTTTCACATTTG 59.075 34.615 0.00 0.00 0.00 2.32
149 150 6.653526 TGATGACACAGGATTTTTCACATT 57.346 33.333 0.00 0.00 0.00 2.71
156 157 5.327732 ACTCCAATGATGACACAGGATTTT 58.672 37.500 0.00 0.00 33.77 1.82
161 162 3.415212 ACAACTCCAATGATGACACAGG 58.585 45.455 0.00 0.00 0.00 4.00
164 165 4.516698 AGTTGACAACTCCAATGATGACAC 59.483 41.667 15.23 0.00 37.02 3.67
177 178 2.224606 CAGTGCATGGAGTTGACAACT 58.775 47.619 20.70 20.70 46.38 3.16
204 205 4.489771 GGTGATGGAGCCCGTGGG 62.490 72.222 0.00 0.00 38.57 4.61
219 220 0.116940 ATTTTGGGCACATCAGGGGT 59.883 50.000 0.00 0.00 0.00 4.95
220 221 1.065998 CAATTTTGGGCACATCAGGGG 60.066 52.381 0.00 0.00 0.00 4.79
223 224 2.232941 AGAGCAATTTTGGGCACATCAG 59.767 45.455 0.00 0.00 0.00 2.90
239 240 2.165167 CATTCAGGCCAAGAAAGAGCA 58.835 47.619 13.72 0.00 0.00 4.26
240 241 1.475682 CCATTCAGGCCAAGAAAGAGC 59.524 52.381 13.72 0.00 0.00 4.09
259 260 3.499737 CCGGCAGCACATCGTTCC 61.500 66.667 0.00 0.00 0.00 3.62
260 261 1.369091 AATCCGGCAGCACATCGTTC 61.369 55.000 0.00 0.00 0.00 3.95
261 262 1.369091 GAATCCGGCAGCACATCGTT 61.369 55.000 0.00 0.00 0.00 3.85
301 302 1.218047 CCGCAGTTCCCTCGATTCA 59.782 57.895 0.00 0.00 0.00 2.57
314 315 1.009829 GGTCATAGCTTGTTCCGCAG 58.990 55.000 0.00 0.00 0.00 5.18
322 323 3.877559 TCTGTCATTGGGTCATAGCTTG 58.122 45.455 0.00 0.00 0.00 4.01
359 360 3.434940 AAGGATTAACCGAACAAGCCT 57.565 42.857 0.00 0.00 42.21 4.58
362 363 4.076394 TGGGAAAGGATTAACCGAACAAG 58.924 43.478 0.00 0.00 44.74 3.16
363 364 4.101645 TGGGAAAGGATTAACCGAACAA 57.898 40.909 0.00 0.00 44.74 2.83
364 365 3.791953 TGGGAAAGGATTAACCGAACA 57.208 42.857 0.00 0.00 44.74 3.18
365 366 5.456548 TTTTGGGAAAGGATTAACCGAAC 57.543 39.130 0.00 0.00 44.74 3.95
366 367 5.715434 CTTTTGGGAAAGGATTAACCGAA 57.285 39.130 0.00 0.00 44.74 4.30
381 382 0.709992 TCCCCTCCAATCCTTTTGGG 59.290 55.000 4.64 0.00 39.96 4.12
382 383 2.767960 CAATCCCCTCCAATCCTTTTGG 59.232 50.000 0.00 0.00 40.87 3.28
383 384 2.767960 CCAATCCCCTCCAATCCTTTTG 59.232 50.000 0.00 0.00 0.00 2.44
384 385 2.894007 GCCAATCCCCTCCAATCCTTTT 60.894 50.000 0.00 0.00 0.00 2.27
385 386 1.343377 GCCAATCCCCTCCAATCCTTT 60.343 52.381 0.00 0.00 0.00 3.11
386 387 0.262876 GCCAATCCCCTCCAATCCTT 59.737 55.000 0.00 0.00 0.00 3.36
387 388 0.925720 TGCCAATCCCCTCCAATCCT 60.926 55.000 0.00 0.00 0.00 3.24
388 389 0.032217 TTGCCAATCCCCTCCAATCC 60.032 55.000 0.00 0.00 0.00 3.01
389 390 1.406903 CTTGCCAATCCCCTCCAATC 58.593 55.000 0.00 0.00 0.00 2.67
390 391 0.031817 CCTTGCCAATCCCCTCCAAT 60.032 55.000 0.00 0.00 0.00 3.16
391 392 1.145900 TCCTTGCCAATCCCCTCCAA 61.146 55.000 0.00 0.00 0.00 3.53
392 393 0.925720 ATCCTTGCCAATCCCCTCCA 60.926 55.000 0.00 0.00 0.00 3.86
393 394 0.262876 AATCCTTGCCAATCCCCTCC 59.737 55.000 0.00 0.00 0.00 4.30
394 395 1.406903 CAATCCTTGCCAATCCCCTC 58.593 55.000 0.00 0.00 0.00 4.30
395 396 0.031817 CCAATCCTTGCCAATCCCCT 60.032 55.000 0.00 0.00 0.00 4.79
396 397 0.325577 ACCAATCCTTGCCAATCCCC 60.326 55.000 0.00 0.00 0.00 4.81
397 398 1.571955 AACCAATCCTTGCCAATCCC 58.428 50.000 0.00 0.00 0.00 3.85
398 399 6.670695 ATATAAACCAATCCTTGCCAATCC 57.329 37.500 0.00 0.00 0.00 3.01
399 400 8.829612 CAAAATATAAACCAATCCTTGCCAATC 58.170 33.333 0.00 0.00 0.00 2.67
400 401 8.547173 TCAAAATATAAACCAATCCTTGCCAAT 58.453 29.630 0.00 0.00 0.00 3.16
401 402 7.821846 GTCAAAATATAAACCAATCCTTGCCAA 59.178 33.333 0.00 0.00 0.00 4.52
402 403 7.180051 AGTCAAAATATAAACCAATCCTTGCCA 59.820 33.333 0.00 0.00 0.00 4.92
403 404 7.555965 AGTCAAAATATAAACCAATCCTTGCC 58.444 34.615 0.00 0.00 0.00 4.52
423 424 9.457436 GGTGGATTTAAACCTCTTATAAGTCAA 57.543 33.333 12.19 0.00 33.40 3.18
424 425 8.832735 AGGTGGATTTAAACCTCTTATAAGTCA 58.167 33.333 12.19 0.00 43.52 3.41
436 437 3.259876 GGGGTTTGAGGTGGATTTAAACC 59.740 47.826 0.00 0.00 45.86 3.27
437 438 4.157246 AGGGGTTTGAGGTGGATTTAAAC 58.843 43.478 0.00 0.00 0.00 2.01
438 439 4.479156 AGGGGTTTGAGGTGGATTTAAA 57.521 40.909 0.00 0.00 0.00 1.52
439 440 4.140900 TGAAGGGGTTTGAGGTGGATTTAA 60.141 41.667 0.00 0.00 0.00 1.52
440 441 3.399644 TGAAGGGGTTTGAGGTGGATTTA 59.600 43.478 0.00 0.00 0.00 1.40
441 442 2.178984 TGAAGGGGTTTGAGGTGGATTT 59.821 45.455 0.00 0.00 0.00 2.17
442 443 1.786441 TGAAGGGGTTTGAGGTGGATT 59.214 47.619 0.00 0.00 0.00 3.01
443 444 1.455822 TGAAGGGGTTTGAGGTGGAT 58.544 50.000 0.00 0.00 0.00 3.41
444 445 1.227249 TTGAAGGGGTTTGAGGTGGA 58.773 50.000 0.00 0.00 0.00 4.02
445 446 2.171003 GATTGAAGGGGTTTGAGGTGG 58.829 52.381 0.00 0.00 0.00 4.61
446 447 2.171003 GGATTGAAGGGGTTTGAGGTG 58.829 52.381 0.00 0.00 0.00 4.00
447 448 1.786441 TGGATTGAAGGGGTTTGAGGT 59.214 47.619 0.00 0.00 0.00 3.85
448 449 2.171003 GTGGATTGAAGGGGTTTGAGG 58.829 52.381 0.00 0.00 0.00 3.86
449 450 3.084786 GAGTGGATTGAAGGGGTTTGAG 58.915 50.000 0.00 0.00 0.00 3.02
450 451 2.552155 CGAGTGGATTGAAGGGGTTTGA 60.552 50.000 0.00 0.00 0.00 2.69
451 452 1.812571 CGAGTGGATTGAAGGGGTTTG 59.187 52.381 0.00 0.00 0.00 2.93
452 453 1.271926 CCGAGTGGATTGAAGGGGTTT 60.272 52.381 0.00 0.00 37.49 3.27
453 454 0.328258 CCGAGTGGATTGAAGGGGTT 59.672 55.000 0.00 0.00 37.49 4.11
454 455 0.546747 TCCGAGTGGATTGAAGGGGT 60.547 55.000 0.00 0.00 40.17 4.95
455 456 2.296920 TCCGAGTGGATTGAAGGGG 58.703 57.895 0.00 0.00 40.17 4.79
465 466 2.511600 GGGTGCGAATCCGAGTGG 60.512 66.667 0.00 0.00 38.22 4.00
466 467 1.811266 CTGGGTGCGAATCCGAGTG 60.811 63.158 0.00 0.00 38.22 3.51
467 468 2.579201 CTGGGTGCGAATCCGAGT 59.421 61.111 0.00 0.00 38.22 4.18
468 469 2.892425 GCTGGGTGCGAATCCGAG 60.892 66.667 0.00 0.00 38.22 4.63
469 470 4.467084 GGCTGGGTGCGAATCCGA 62.467 66.667 0.00 0.00 44.05 4.55
471 472 3.969250 TTCGGCTGGGTGCGAATCC 62.969 63.158 0.00 0.00 44.05 3.01
472 473 1.582610 TTTTCGGCTGGGTGCGAATC 61.583 55.000 0.00 0.00 44.05 2.52
473 474 1.175983 TTTTTCGGCTGGGTGCGAAT 61.176 50.000 0.00 0.00 44.05 3.34
474 475 1.791103 CTTTTTCGGCTGGGTGCGAA 61.791 55.000 0.00 0.00 44.05 4.70
475 476 2.203224 TTTTTCGGCTGGGTGCGA 60.203 55.556 0.00 0.00 44.05 5.10
476 477 2.255252 CTTTTTCGGCTGGGTGCG 59.745 61.111 0.00 0.00 44.05 5.34
477 478 2.650778 CCTTTTTCGGCTGGGTGC 59.349 61.111 0.00 0.00 41.94 5.01
478 479 2.650778 GCCTTTTTCGGCTGGGTG 59.349 61.111 0.00 0.00 46.63 4.61
485 486 8.603181 CATAAAATTTCATTAGGCCTTTTTCGG 58.397 33.333 12.58 2.05 0.00 4.30
486 487 8.116136 GCATAAAATTTCATTAGGCCTTTTTCG 58.884 33.333 12.58 6.11 34.83 3.46
487 488 8.945057 TGCATAAAATTTCATTAGGCCTTTTTC 58.055 29.630 12.58 0.00 38.80 2.29
488 489 8.860780 TGCATAAAATTTCATTAGGCCTTTTT 57.139 26.923 12.58 12.48 38.80 1.94
489 490 7.553760 CCTGCATAAAATTTCATTAGGCCTTTT 59.446 33.333 12.58 5.15 38.80 2.27
490 491 7.049754 CCTGCATAAAATTTCATTAGGCCTTT 58.950 34.615 12.58 0.00 38.80 3.11
491 492 6.156775 ACCTGCATAAAATTTCATTAGGCCTT 59.843 34.615 12.58 0.00 38.80 4.35
492 493 5.662657 ACCTGCATAAAATTTCATTAGGCCT 59.337 36.000 11.78 11.78 38.80 5.19
493 494 5.917462 ACCTGCATAAAATTTCATTAGGCC 58.083 37.500 0.00 0.00 38.80 5.19
494 495 7.041107 TCAACCTGCATAAAATTTCATTAGGC 58.959 34.615 0.00 0.00 39.70 3.93
495 496 9.603921 AATCAACCTGCATAAAATTTCATTAGG 57.396 29.630 0.00 0.00 0.00 2.69
498 499 8.949177 GGAAATCAACCTGCATAAAATTTCATT 58.051 29.630 16.66 0.00 34.76 2.57
499 500 7.278424 CGGAAATCAACCTGCATAAAATTTCAT 59.722 33.333 16.66 0.00 34.76 2.57
500 501 6.589523 CGGAAATCAACCTGCATAAAATTTCA 59.410 34.615 16.66 0.00 34.76 2.69
501 502 6.589907 ACGGAAATCAACCTGCATAAAATTTC 59.410 34.615 10.72 10.72 33.18 2.17
502 503 6.463360 ACGGAAATCAACCTGCATAAAATTT 58.537 32.000 0.00 0.00 0.00 1.82
545 547 0.027455 TGTCTTTTTGCACTCACGCG 59.973 50.000 3.53 3.53 33.35 6.01
598 634 2.188829 CGGGATGCATCGCAATGGT 61.189 57.895 34.44 0.00 43.62 3.55
621 686 4.022589 ACATCCTCGTCTCTTTCAACGTAA 60.023 41.667 0.00 0.00 39.78 3.18
702 4589 2.239907 TCTCGTCATCTCTTCCTCTCCA 59.760 50.000 0.00 0.00 0.00 3.86
836 6872 4.454678 TGATAATGATGTGGCAGGAGAAC 58.545 43.478 0.00 0.00 0.00 3.01
842 6878 2.578786 TGGCTGATAATGATGTGGCAG 58.421 47.619 0.00 0.00 0.00 4.85
977 7027 7.221067 CCATTTCTTTTGCGTTTGTTTACACTA 59.779 33.333 0.00 0.00 0.00 2.74
978 7028 6.035542 CCATTTCTTTTGCGTTTGTTTACACT 59.964 34.615 0.00 0.00 0.00 3.55
979 7029 6.035112 TCCATTTCTTTTGCGTTTGTTTACAC 59.965 34.615 0.00 0.00 0.00 2.90
980 7030 6.100004 TCCATTTCTTTTGCGTTTGTTTACA 58.900 32.000 0.00 0.00 0.00 2.41
1254 7315 1.519455 GGCCGTGAGAAGGATGTCG 60.519 63.158 0.00 0.00 0.00 4.35
1314 7375 1.683441 CTCGCCCTTGGGGTAGTTT 59.317 57.895 7.91 0.00 46.51 2.66
1537 9104 1.840630 CGCATGAACACGTCCTGCAA 61.841 55.000 0.00 0.00 45.37 4.08
1722 9289 1.452110 TCTTGTGATGGCCGATGTTG 58.548 50.000 0.00 0.00 0.00 3.33
1896 9484 1.897641 AGAAGCGATCGAACTCGTTC 58.102 50.000 21.57 10.40 40.73 3.95
1911 9499 2.465920 GTCGTGTCGCGCAAGAAG 59.534 61.111 17.08 0.00 37.34 2.85
1995 9583 3.871248 GACGTCGGGGTGGTTGGAC 62.871 68.421 0.00 0.00 0.00 4.02
2021 9609 3.984749 GGAGCTCGGCGAGGATCC 61.985 72.222 35.03 27.43 0.00 3.36
2508 10111 2.054799 TGCCTCTTGTAAACCCTCACT 58.945 47.619 0.00 0.00 0.00 3.41
2632 10249 8.135382 AGGAGACCATACACCATAATATGTAC 57.865 38.462 0.00 0.00 34.24 2.90
2633 10250 9.831682 TTAGGAGACCATACACCATAATATGTA 57.168 33.333 0.00 0.00 35.82 2.29
2634 10251 8.736097 TTAGGAGACCATACACCATAATATGT 57.264 34.615 0.00 0.00 0.00 2.29
2648 10328 5.520748 AACCTCACAAATTAGGAGACCAT 57.479 39.130 0.00 0.00 36.66 3.55
2650 10330 6.884836 ACAATAACCTCACAAATTAGGAGACC 59.115 38.462 0.00 0.00 36.66 3.85
2651 10331 7.923414 ACAATAACCTCACAAATTAGGAGAC 57.077 36.000 0.00 0.00 36.66 3.36
2697 10387 8.009622 TCCGTATACACATTATTCCTTGTACA 57.990 34.615 3.32 0.00 0.00 2.90
2701 10391 8.139350 TGTACTCCGTATACACATTATTCCTTG 58.861 37.037 3.32 0.00 0.00 3.61
2713 10403 9.537192 CATTTTATCCTTTGTACTCCGTATACA 57.463 33.333 3.32 0.00 0.00 2.29
2714 10404 9.754382 TCATTTTATCCTTTGTACTCCGTATAC 57.246 33.333 0.00 0.00 0.00 1.47
2716 10406 9.847224 ATTCATTTTATCCTTTGTACTCCGTAT 57.153 29.630 0.00 0.00 0.00 3.06
2770 10500 9.877222 TCTTTACTTCCTTTTTCCCTTCTTATT 57.123 29.630 0.00 0.00 0.00 1.40
2771 10501 9.521841 CTCTTTACTTCCTTTTTCCCTTCTTAT 57.478 33.333 0.00 0.00 0.00 1.73
2772 10502 8.720537 TCTCTTTACTTCCTTTTTCCCTTCTTA 58.279 33.333 0.00 0.00 0.00 2.10
2773 10503 7.583625 TCTCTTTACTTCCTTTTTCCCTTCTT 58.416 34.615 0.00 0.00 0.00 2.52
2774 10504 7.150447 TCTCTTTACTTCCTTTTTCCCTTCT 57.850 36.000 0.00 0.00 0.00 2.85
2775 10505 7.818997 TTCTCTTTACTTCCTTTTTCCCTTC 57.181 36.000 0.00 0.00 0.00 3.46
2776 10506 8.004801 TCATTCTCTTTACTTCCTTTTTCCCTT 58.995 33.333 0.00 0.00 0.00 3.95
2777 10507 7.526918 TCATTCTCTTTACTTCCTTTTTCCCT 58.473 34.615 0.00 0.00 0.00 4.20
2778 10508 7.761038 TCATTCTCTTTACTTCCTTTTTCCC 57.239 36.000 0.00 0.00 0.00 3.97
2779 10509 9.631452 CAATCATTCTCTTTACTTCCTTTTTCC 57.369 33.333 0.00 0.00 0.00 3.13
2780 10510 9.631452 CCAATCATTCTCTTTACTTCCTTTTTC 57.369 33.333 0.00 0.00 0.00 2.29
2781 10511 9.367160 TCCAATCATTCTCTTTACTTCCTTTTT 57.633 29.630 0.00 0.00 0.00 1.94
2782 10512 8.940397 TCCAATCATTCTCTTTACTTCCTTTT 57.060 30.769 0.00 0.00 0.00 2.27
2783 10513 8.797438 GTTCCAATCATTCTCTTTACTTCCTTT 58.203 33.333 0.00 0.00 0.00 3.11
2784 10514 7.944554 TGTTCCAATCATTCTCTTTACTTCCTT 59.055 33.333 0.00 0.00 0.00 3.36
2785 10515 7.461749 TGTTCCAATCATTCTCTTTACTTCCT 58.538 34.615 0.00 0.00 0.00 3.36
2786 10516 7.607991 TCTGTTCCAATCATTCTCTTTACTTCC 59.392 37.037 0.00 0.00 0.00 3.46
2787 10517 8.553459 TCTGTTCCAATCATTCTCTTTACTTC 57.447 34.615 0.00 0.00 0.00 3.01
2788 10518 8.924511 TTCTGTTCCAATCATTCTCTTTACTT 57.075 30.769 0.00 0.00 0.00 2.24
2789 10519 8.954350 CATTCTGTTCCAATCATTCTCTTTACT 58.046 33.333 0.00 0.00 0.00 2.24
2790 10520 8.186821 CCATTCTGTTCCAATCATTCTCTTTAC 58.813 37.037 0.00 0.00 0.00 2.01
2791 10521 7.148018 GCCATTCTGTTCCAATCATTCTCTTTA 60.148 37.037 0.00 0.00 0.00 1.85
2792 10522 6.350780 GCCATTCTGTTCCAATCATTCTCTTT 60.351 38.462 0.00 0.00 0.00 2.52
2793 10523 5.126707 GCCATTCTGTTCCAATCATTCTCTT 59.873 40.000 0.00 0.00 0.00 2.85
2794 10524 4.643784 GCCATTCTGTTCCAATCATTCTCT 59.356 41.667 0.00 0.00 0.00 3.10
2795 10525 4.497006 CGCCATTCTGTTCCAATCATTCTC 60.497 45.833 0.00 0.00 0.00 2.87
2796 10526 3.379372 CGCCATTCTGTTCCAATCATTCT 59.621 43.478 0.00 0.00 0.00 2.40
2797 10527 3.129287 ACGCCATTCTGTTCCAATCATTC 59.871 43.478 0.00 0.00 0.00 2.67
2798 10528 3.091545 ACGCCATTCTGTTCCAATCATT 58.908 40.909 0.00 0.00 0.00 2.57
2799 10529 2.726821 ACGCCATTCTGTTCCAATCAT 58.273 42.857 0.00 0.00 0.00 2.45
2800 10530 2.198827 ACGCCATTCTGTTCCAATCA 57.801 45.000 0.00 0.00 0.00 2.57
2801 10531 2.030457 CGTACGCCATTCTGTTCCAATC 59.970 50.000 0.52 0.00 0.00 2.67
2802 10532 2.006888 CGTACGCCATTCTGTTCCAAT 58.993 47.619 0.52 0.00 0.00 3.16
2864 10613 1.269883 CCAGCTTTCAGTTGCATGCAA 60.270 47.619 28.80 28.80 0.00 4.08
2980 10748 1.559814 CGCTACGCTACGCTACGTA 59.440 57.895 0.00 0.00 43.35 3.57
3000 10768 3.449377 TCAGTTACAACATCTATCGGCCA 59.551 43.478 2.24 0.00 0.00 5.36
3002 10770 4.683832 AGTCAGTTACAACATCTATCGGC 58.316 43.478 0.00 0.00 0.00 5.54
3008 10776 4.945246 ACGTTGAGTCAGTTACAACATCT 58.055 39.130 0.00 0.00 42.37 2.90
3072 10841 2.203294 GTTGGTGCCTTGTCCCGT 60.203 61.111 0.00 0.00 0.00 5.28
3197 11046 4.172807 ACATAAAGGTCCTTGTAGGTCCA 58.827 43.478 4.45 0.00 44.65 4.02
3204 11053 7.015195 ACTGCATTTTTACATAAAGGTCCTTGT 59.985 33.333 4.45 2.15 0.00 3.16
3205 11054 7.329226 CACTGCATTTTTACATAAAGGTCCTTG 59.671 37.037 4.45 0.00 0.00 3.61
3206 11055 7.378181 CACTGCATTTTTACATAAAGGTCCTT 58.622 34.615 0.00 0.00 0.00 3.36
3207 11056 6.572314 GCACTGCATTTTTACATAAAGGTCCT 60.572 38.462 0.00 0.00 0.00 3.85
3208 11057 5.576774 GCACTGCATTTTTACATAAAGGTCC 59.423 40.000 0.00 0.00 0.00 4.46
3209 11058 6.089417 GTGCACTGCATTTTTACATAAAGGTC 59.911 38.462 10.32 0.00 41.91 3.85
3210 11059 5.925969 GTGCACTGCATTTTTACATAAAGGT 59.074 36.000 10.32 0.00 41.91 3.50
3211 11060 5.060816 CGTGCACTGCATTTTTACATAAAGG 59.939 40.000 16.19 0.00 41.91 3.11
3212 11061 5.443170 GCGTGCACTGCATTTTTACATAAAG 60.443 40.000 22.75 0.95 41.91 1.85
3213 11062 4.384247 GCGTGCACTGCATTTTTACATAAA 59.616 37.500 22.75 0.00 41.91 1.40
3252 11104 1.068264 GTAGCCTTCTTTGCAGGTTGC 60.068 52.381 0.00 0.00 45.29 4.17
3253 11105 2.229792 TGTAGCCTTCTTTGCAGGTTG 58.770 47.619 0.00 0.00 33.40 3.77
3254 11106 2.656947 TGTAGCCTTCTTTGCAGGTT 57.343 45.000 0.00 0.00 33.40 3.50
3255 11107 2.440409 CATGTAGCCTTCTTTGCAGGT 58.560 47.619 0.00 0.00 33.40 4.00
3256 11108 1.747355 CCATGTAGCCTTCTTTGCAGG 59.253 52.381 0.00 0.00 34.08 4.85
3257 11109 2.421424 GTCCATGTAGCCTTCTTTGCAG 59.579 50.000 0.00 0.00 0.00 4.41
3258 11110 2.436417 GTCCATGTAGCCTTCTTTGCA 58.564 47.619 0.00 0.00 0.00 4.08
3274 11126 2.268920 GATTCAGGCAGCGGTCCA 59.731 61.111 6.00 0.00 0.00 4.02
3281 11133 2.099141 TTGTTCGAGGATTCAGGCAG 57.901 50.000 0.00 0.00 0.00 4.85
3284 11136 5.419542 TCTTGTATTGTTCGAGGATTCAGG 58.580 41.667 0.00 0.00 0.00 3.86
3285 11137 6.035435 CACTCTTGTATTGTTCGAGGATTCAG 59.965 42.308 0.00 0.00 0.00 3.02
3303 11155 2.717580 TGCACGGTACTACACTCTTG 57.282 50.000 0.00 0.00 0.00 3.02
3305 11157 1.271656 GGTTGCACGGTACTACACTCT 59.728 52.381 0.00 0.00 0.00 3.24
3306 11158 1.271656 AGGTTGCACGGTACTACACTC 59.728 52.381 0.00 0.00 0.00 3.51
3307 11159 1.271656 GAGGTTGCACGGTACTACACT 59.728 52.381 0.00 0.00 0.00 3.55
3308 11160 1.000060 TGAGGTTGCACGGTACTACAC 60.000 52.381 0.00 0.00 0.00 2.90
3309 11161 1.271379 CTGAGGTTGCACGGTACTACA 59.729 52.381 0.00 0.00 0.00 2.74
3310 11162 1.542915 TCTGAGGTTGCACGGTACTAC 59.457 52.381 0.00 0.00 0.00 2.73
3311 11163 1.913778 TCTGAGGTTGCACGGTACTA 58.086 50.000 0.00 0.00 0.00 1.82
3312 11164 1.045407 TTCTGAGGTTGCACGGTACT 58.955 50.000 0.00 0.00 0.00 2.73
3313 11165 1.873698 TTTCTGAGGTTGCACGGTAC 58.126 50.000 0.00 0.00 0.00 3.34
3314 11166 2.623878 TTTTCTGAGGTTGCACGGTA 57.376 45.000 0.00 0.00 0.00 4.02
3315 11167 1.757682 TTTTTCTGAGGTTGCACGGT 58.242 45.000 0.00 0.00 0.00 4.83
3316 11168 3.369546 AATTTTTCTGAGGTTGCACGG 57.630 42.857 0.00 0.00 0.00 4.94
3317 11169 3.490526 CCAAATTTTTCTGAGGTTGCACG 59.509 43.478 0.00 0.00 0.00 5.34
3318 11170 4.692228 TCCAAATTTTTCTGAGGTTGCAC 58.308 39.130 0.00 0.00 0.00 4.57
3319 11171 4.740334 GCTCCAAATTTTTCTGAGGTTGCA 60.740 41.667 0.00 0.00 0.00 4.08
3320 11172 3.742882 GCTCCAAATTTTTCTGAGGTTGC 59.257 43.478 0.00 0.00 0.00 4.17
3321 11173 4.947645 TGCTCCAAATTTTTCTGAGGTTG 58.052 39.130 0.00 0.00 0.00 3.77
3322 11174 5.813513 ATGCTCCAAATTTTTCTGAGGTT 57.186 34.783 0.00 0.00 0.00 3.50
3323 11175 5.813513 AATGCTCCAAATTTTTCTGAGGT 57.186 34.783 0.00 0.00 0.00 3.85
3324 11176 7.500720 AAAAATGCTCCAAATTTTTCTGAGG 57.499 32.000 1.96 0.00 41.20 3.86
3330 11182 8.404765 ACAAATCGAAAAATGCTCCAAATTTTT 58.595 25.926 6.58 6.58 45.35 1.94
3331 11183 7.856894 CACAAATCGAAAAATGCTCCAAATTTT 59.143 29.630 0.00 0.00 38.54 1.82
3332 11184 7.012232 ACACAAATCGAAAAATGCTCCAAATTT 59.988 29.630 0.00 0.00 0.00 1.82
3333 11185 6.482973 ACACAAATCGAAAAATGCTCCAAATT 59.517 30.769 0.00 0.00 0.00 1.82
3334 11186 5.990996 ACACAAATCGAAAAATGCTCCAAAT 59.009 32.000 0.00 0.00 0.00 2.32
3335 11187 5.233902 CACACAAATCGAAAAATGCTCCAAA 59.766 36.000 0.00 0.00 0.00 3.28
3336 11188 4.744137 CACACAAATCGAAAAATGCTCCAA 59.256 37.500 0.00 0.00 0.00 3.53
3337 11189 4.202101 ACACACAAATCGAAAAATGCTCCA 60.202 37.500 0.00 0.00 0.00 3.86
3338 11190 4.148696 CACACACAAATCGAAAAATGCTCC 59.851 41.667 0.00 0.00 0.00 4.70
3339 11191 4.739716 ACACACACAAATCGAAAAATGCTC 59.260 37.500 0.00 0.00 0.00 4.26
3340 11192 4.681744 ACACACACAAATCGAAAAATGCT 58.318 34.783 0.00 0.00 0.00 3.79
3341 11193 5.388225 AACACACACAAATCGAAAAATGC 57.612 34.783 0.00 0.00 0.00 3.56
3342 11194 7.594758 AGGATAACACACACAAATCGAAAAATG 59.405 33.333 0.00 0.00 0.00 2.32
3343 11195 7.657336 AGGATAACACACACAAATCGAAAAAT 58.343 30.769 0.00 0.00 0.00 1.82
3344 11196 7.033530 AGGATAACACACACAAATCGAAAAA 57.966 32.000 0.00 0.00 0.00 1.94
3345 11197 6.627395 AGGATAACACACACAAATCGAAAA 57.373 33.333 0.00 0.00 0.00 2.29
3346 11198 6.434596 CAAGGATAACACACACAAATCGAAA 58.565 36.000 0.00 0.00 0.00 3.46
3347 11199 5.561919 GCAAGGATAACACACACAAATCGAA 60.562 40.000 0.00 0.00 0.00 3.71
3348 11200 4.083537 GCAAGGATAACACACACAAATCGA 60.084 41.667 0.00 0.00 0.00 3.59
3349 11201 4.158384 GCAAGGATAACACACACAAATCG 58.842 43.478 0.00 0.00 0.00 3.34
3350 11202 4.158384 CGCAAGGATAACACACACAAATC 58.842 43.478 0.00 0.00 0.00 2.17
3351 11203 3.611530 GCGCAAGGATAACACACACAAAT 60.612 43.478 0.30 0.00 38.28 2.32
3352 11204 2.287308 GCGCAAGGATAACACACACAAA 60.287 45.455 0.30 0.00 38.28 2.83
3353 11205 1.265635 GCGCAAGGATAACACACACAA 59.734 47.619 0.30 0.00 38.28 3.33
3354 11206 0.871722 GCGCAAGGATAACACACACA 59.128 50.000 0.30 0.00 38.28 3.72
3355 11207 0.871722 TGCGCAAGGATAACACACAC 59.128 50.000 8.16 0.00 38.28 3.82
3356 11208 1.155889 CTGCGCAAGGATAACACACA 58.844 50.000 13.05 0.00 36.74 3.72
3357 11209 3.975992 CTGCGCAAGGATAACACAC 57.024 52.632 13.05 0.00 36.74 3.82
3371 11223 2.203394 ATTAGCATGGCCCCTGCG 60.203 61.111 18.59 0.00 44.38 5.18
3372 11224 0.468771 AAGATTAGCATGGCCCCTGC 60.469 55.000 17.40 17.40 39.97 4.85
3373 11225 2.077687 AAAGATTAGCATGGCCCCTG 57.922 50.000 0.00 0.00 0.00 4.45
3374 11226 2.854736 AAAAGATTAGCATGGCCCCT 57.145 45.000 0.00 0.00 0.00 4.79
3393 11245 9.964303 CATCCGATAAAATTGGAATGATACAAA 57.036 29.630 0.00 0.00 45.74 2.83
3394 11246 9.348476 TCATCCGATAAAATTGGAATGATACAA 57.652 29.630 0.00 0.00 45.74 2.41
3395 11247 8.783093 GTCATCCGATAAAATTGGAATGATACA 58.217 33.333 0.00 0.00 45.74 2.29
3396 11248 8.237267 GGTCATCCGATAAAATTGGAATGATAC 58.763 37.037 0.00 1.28 45.74 2.24
3397 11249 7.393234 GGGTCATCCGATAAAATTGGAATGATA 59.607 37.037 0.00 0.00 45.74 2.15
3398 11250 6.209391 GGGTCATCCGATAAAATTGGAATGAT 59.791 38.462 0.00 0.00 45.74 2.45
3399 11251 5.534654 GGGTCATCCGATAAAATTGGAATGA 59.465 40.000 0.00 3.15 45.74 2.57
3400 11252 5.278957 GGGGTCATCCGATAAAATTGGAATG 60.279 44.000 0.00 1.18 45.74 2.67
3401 11253 4.832823 GGGGTCATCCGATAAAATTGGAAT 59.167 41.667 0.00 0.00 45.74 3.01
3402 11254 4.211920 GGGGTCATCCGATAAAATTGGAA 58.788 43.478 0.00 0.00 45.74 3.53
3403 11255 3.827722 GGGGTCATCCGATAAAATTGGA 58.172 45.455 0.00 0.00 46.63 3.53
3421 11273 2.502202 GCTAGAGCTATCCCTTCGGGG 61.502 61.905 0.00 0.00 46.67 5.73
3422 11274 0.892063 GCTAGAGCTATCCCTTCGGG 59.108 60.000 0.00 0.00 40.41 5.14
3434 11286 2.953824 CGTCGCAGCAGCTAGAGC 60.954 66.667 0.00 0.00 39.10 4.09
3435 11287 2.278466 CCGTCGCAGCAGCTAGAG 60.278 66.667 0.00 0.00 39.10 2.43
3436 11288 3.826754 CCCGTCGCAGCAGCTAGA 61.827 66.667 0.00 0.00 39.10 2.43
3437 11289 3.649277 AACCCGTCGCAGCAGCTAG 62.649 63.158 0.00 0.00 39.10 3.42
3438 11290 1.879737 TAAACCCGTCGCAGCAGCTA 61.880 55.000 0.00 0.00 39.10 3.32
3439 11291 2.521958 ATAAACCCGTCGCAGCAGCT 62.522 55.000 0.00 0.00 39.10 4.24
3440 11292 0.808453 TATAAACCCGTCGCAGCAGC 60.808 55.000 0.00 0.00 37.42 5.25
3441 11293 1.647346 TTATAAACCCGTCGCAGCAG 58.353 50.000 0.00 0.00 0.00 4.24
3442 11294 1.733360 GTTTATAAACCCGTCGCAGCA 59.267 47.619 16.14 0.00 32.82 4.41
3443 11295 2.004733 AGTTTATAAACCCGTCGCAGC 58.995 47.619 21.92 0.00 39.71 5.25
3444 11296 4.427312 ACTAGTTTATAAACCCGTCGCAG 58.573 43.478 21.92 11.49 39.71 5.18
3445 11297 4.454728 ACTAGTTTATAAACCCGTCGCA 57.545 40.909 21.92 1.87 39.71 5.10
3446 11298 5.582550 AGTACTAGTTTATAAACCCGTCGC 58.417 41.667 21.92 15.02 39.71 5.19
3447 11299 7.475840 AGAAGTACTAGTTTATAAACCCGTCG 58.524 38.462 21.92 10.33 39.71 5.12
3448 11300 9.645059 AAAGAAGTACTAGTTTATAAACCCGTC 57.355 33.333 21.92 13.11 39.71 4.79
3464 11316 8.027771 CGACACTGGTCTATTAAAAGAAGTACT 58.972 37.037 0.00 0.00 42.05 2.73
3465 11317 7.275123 CCGACACTGGTCTATTAAAAGAAGTAC 59.725 40.741 0.00 0.00 42.05 2.73
3466 11318 7.318141 CCGACACTGGTCTATTAAAAGAAGTA 58.682 38.462 0.00 0.00 42.05 2.24
3467 11319 6.164176 CCGACACTGGTCTATTAAAAGAAGT 58.836 40.000 0.00 0.00 42.05 3.01
3468 11320 5.063564 GCCGACACTGGTCTATTAAAAGAAG 59.936 44.000 0.00 0.00 42.05 2.85
3469 11321 4.933400 GCCGACACTGGTCTATTAAAAGAA 59.067 41.667 0.00 0.00 42.05 2.52
3470 11322 4.501071 GCCGACACTGGTCTATTAAAAGA 58.499 43.478 0.00 0.00 42.05 2.52
3471 11323 3.306166 CGCCGACACTGGTCTATTAAAAG 59.694 47.826 0.00 0.00 42.05 2.27
3472 11324 3.255725 CGCCGACACTGGTCTATTAAAA 58.744 45.455 0.00 0.00 42.05 1.52
3473 11325 2.883574 CGCCGACACTGGTCTATTAAA 58.116 47.619 0.00 0.00 42.05 1.52
3474 11326 1.470285 GCGCCGACACTGGTCTATTAA 60.470 52.381 0.00 0.00 42.05 1.40
3475 11327 0.101759 GCGCCGACACTGGTCTATTA 59.898 55.000 0.00 0.00 42.05 0.98
3476 11328 1.153628 GCGCCGACACTGGTCTATT 60.154 57.895 0.00 0.00 42.05 1.73
3477 11329 2.494918 GCGCCGACACTGGTCTAT 59.505 61.111 0.00 0.00 42.05 1.98
3478 11330 3.755628 GGCGCCGACACTGGTCTA 61.756 66.667 12.58 0.00 42.05 2.59
3493 11345 4.821589 CTCTTGTCTCCCGCCGGC 62.822 72.222 19.07 19.07 0.00 6.13
3494 11346 4.148825 CCTCTTGTCTCCCGCCGG 62.149 72.222 0.00 0.00 0.00 6.13
3495 11347 2.646175 TTCCTCTTGTCTCCCGCCG 61.646 63.158 0.00 0.00 0.00 6.46
3496 11348 1.079057 GTTCCTCTTGTCTCCCGCC 60.079 63.158 0.00 0.00 0.00 6.13
3497 11349 1.079057 GGTTCCTCTTGTCTCCCGC 60.079 63.158 0.00 0.00 0.00 6.13
3498 11350 1.751924 CTAGGTTCCTCTTGTCTCCCG 59.248 57.143 0.00 0.00 0.00 5.14
3499 11351 1.483004 GCTAGGTTCCTCTTGTCTCCC 59.517 57.143 0.00 0.00 0.00 4.30
3500 11352 2.093921 GTGCTAGGTTCCTCTTGTCTCC 60.094 54.545 0.00 0.00 0.00 3.71
3501 11353 2.416162 CGTGCTAGGTTCCTCTTGTCTC 60.416 54.545 0.00 0.00 0.00 3.36
3502 11354 1.546476 CGTGCTAGGTTCCTCTTGTCT 59.454 52.381 0.00 0.00 0.00 3.41
3503 11355 1.404315 CCGTGCTAGGTTCCTCTTGTC 60.404 57.143 0.00 0.00 0.00 3.18
3504 11356 0.608640 CCGTGCTAGGTTCCTCTTGT 59.391 55.000 0.00 0.00 0.00 3.16
3505 11357 0.741221 GCCGTGCTAGGTTCCTCTTG 60.741 60.000 0.00 0.00 0.00 3.02
3506 11358 0.905337 AGCCGTGCTAGGTTCCTCTT 60.905 55.000 0.00 0.00 36.99 2.85
3507 11359 1.305381 AGCCGTGCTAGGTTCCTCT 60.305 57.895 0.00 0.00 36.99 3.69
3508 11360 1.153549 CAGCCGTGCTAGGTTCCTC 60.154 63.158 0.00 0.00 36.40 3.71
3509 11361 2.660064 CCAGCCGTGCTAGGTTCCT 61.660 63.158 0.00 0.00 36.40 3.36
3510 11362 2.125106 CCAGCCGTGCTAGGTTCC 60.125 66.667 0.00 0.00 36.40 3.62
3511 11363 2.125106 CCCAGCCGTGCTAGGTTC 60.125 66.667 2.94 0.00 36.40 3.62
3514 11366 2.499685 GTACCCAGCCGTGCTAGG 59.500 66.667 8.39 8.39 42.90 3.02
3515 11367 2.104331 CGTACCCAGCCGTGCTAG 59.896 66.667 0.00 0.00 36.40 3.42
3516 11368 2.361483 TCGTACCCAGCCGTGCTA 60.361 61.111 0.00 0.00 36.40 3.49
3517 11369 3.760035 CTCGTACCCAGCCGTGCT 61.760 66.667 0.00 0.00 40.77 4.40
3521 11373 4.554363 CTCGCTCGTACCCAGCCG 62.554 72.222 6.00 2.68 32.83 5.52
3522 11374 4.874977 GCTCGCTCGTACCCAGCC 62.875 72.222 6.00 0.00 32.83 4.85
3523 11375 4.129737 TGCTCGCTCGTACCCAGC 62.130 66.667 1.95 1.95 0.00 4.85
3524 11376 2.103143 CTGCTCGCTCGTACCCAG 59.897 66.667 0.00 0.00 0.00 4.45
3525 11377 2.675423 ACTGCTCGCTCGTACCCA 60.675 61.111 0.00 0.00 0.00 4.51
3526 11378 2.202623 CACTGCTCGCTCGTACCC 60.203 66.667 0.00 0.00 0.00 3.69
3527 11379 2.881352 GCACTGCTCGCTCGTACC 60.881 66.667 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.