Multiple sequence alignment - TraesCS3B01G133000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G133000 chr3B 100.000 3929 0 0 1 3929 115399327 115395399 0.000000e+00 7256.0
1 TraesCS3B01G133000 chr3B 86.207 87 11 1 1248 1333 381754760 381754846 4.180000e-15 93.5
2 TraesCS3B01G133000 chr3D 94.181 2595 101 26 1353 3929 69500429 69497867 0.000000e+00 3910.0
3 TraesCS3B01G133000 chr3D 93.341 826 47 4 551 1371 69501419 69500597 0.000000e+00 1214.0
4 TraesCS3B01G133000 chr3D 93.896 557 23 4 1 547 69502266 69501711 0.000000e+00 830.0
5 TraesCS3B01G133000 chr3A 93.485 2594 115 35 1353 3929 80689115 80686559 0.000000e+00 3805.0
6 TraesCS3B01G133000 chr3A 94.823 792 35 4 586 1371 80690086 80689295 0.000000e+00 1230.0
7 TraesCS3B01G133000 chr3A 93.841 552 29 3 1 548 80690735 80690185 0.000000e+00 826.0
8 TraesCS3B01G133000 chr5D 90.123 81 7 1 160 240 525731634 525731713 1.930000e-18 104.0
9 TraesCS3B01G133000 chr5D 86.813 91 10 2 1250 1339 252217192 252217281 2.500000e-17 100.0
10 TraesCS3B01G133000 chr7A 88.506 87 7 3 1249 1333 562274919 562275004 6.950000e-18 102.0
11 TraesCS3B01G133000 chr6A 88.235 85 10 0 205 289 542199763 542199679 6.950000e-18 102.0
12 TraesCS3B01G133000 chr6B 85.870 92 6 6 1249 1338 470123453 470123539 1.500000e-14 91.6
13 TraesCS3B01G133000 chr6B 84.783 92 9 3 1248 1337 630922444 630922356 1.940000e-13 87.9
14 TraesCS3B01G133000 chr4A 84.783 92 9 3 1248 1334 629375490 629375399 1.940000e-13 87.9
15 TraesCS3B01G133000 chr4A 84.043 94 9 4 1245 1335 696171101 696171191 6.990000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G133000 chr3B 115395399 115399327 3928 True 7256.000000 7256 100.000000 1 3929 1 chr3B.!!$R1 3928
1 TraesCS3B01G133000 chr3D 69497867 69502266 4399 True 1984.666667 3910 93.806000 1 3929 3 chr3D.!!$R1 3928
2 TraesCS3B01G133000 chr3A 80686559 80690735 4176 True 1953.666667 3805 94.049667 1 3929 3 chr3A.!!$R1 3928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 360 0.948623 CGAGCGTTGGTGTGATTCCA 60.949 55.000 0.00 0.0 0.0 3.53 F
906 1209 1.402968 CAGTGCACCAGGATATGTTGC 59.597 52.381 14.63 0.0 0.0 4.17 F
2851 3361 0.113190 CCTTGAAAGTCCTGCCCCTT 59.887 55.000 0.00 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 2273 0.599558 GCTGCATCTTTGTGGAAGCA 59.400 50.000 0.0 0.0 37.55 3.91 R
2859 3369 0.741221 GCCCGTAGAAGTCTTGCTGG 60.741 60.000 0.0 0.0 0.00 4.85 R
3712 4246 1.292541 GAGGACCAGGAACACGACC 59.707 63.158 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
353 360 0.948623 CGAGCGTTGGTGTGATTCCA 60.949 55.000 0.00 0.00 0.00 3.53
487 501 7.970384 TGTTCATTTAGACGTTCCAATGATAC 58.030 34.615 14.40 14.40 35.95 2.24
629 931 6.125029 ACTGAGGTTGCTGATATTTAATGCT 58.875 36.000 0.00 0.00 0.00 3.79
743 1045 4.141597 TGTGGTTGGTGATCTGAGTTTACA 60.142 41.667 0.00 0.00 0.00 2.41
801 1104 8.652290 AGAGTGAAAGTTTTCCTACATTAGAGT 58.348 33.333 2.41 0.00 36.36 3.24
855 1158 3.012959 TCCTGACTCCCTCCTGTCTATTT 59.987 47.826 0.00 0.00 34.57 1.40
884 1187 7.843490 TGTATCTTATGTCTTTACTTGTGCC 57.157 36.000 0.00 0.00 0.00 5.01
906 1209 1.402968 CAGTGCACCAGGATATGTTGC 59.597 52.381 14.63 0.00 0.00 4.17
910 1213 2.025981 TGCACCAGGATATGTTGCTTCT 60.026 45.455 0.00 0.00 0.00 2.85
1088 1392 2.431454 TGTGCATTCGCCATTCTGTTA 58.569 42.857 0.00 0.00 37.32 2.41
1150 1454 3.004419 TGGAGTTCTACAGTCACTCAACG 59.996 47.826 8.89 0.00 39.02 4.10
1190 1494 3.515901 AGTTTAGACCCGATCTTGAGCTT 59.484 43.478 0.00 0.00 39.04 3.74
1258 1562 5.180868 GTGTACATAGTACATACTCCCTCCG 59.819 48.000 12.53 0.00 37.73 4.63
1277 1581 2.492001 CGTCCAAAAATAAGTGTCGCG 58.508 47.619 0.00 0.00 0.00 5.87
1322 1630 4.028993 ACCACGACACTTATTTTGGGAT 57.971 40.909 0.00 0.00 0.00 3.85
1326 1634 4.094887 CACGACACTTATTTTGGGATGGAG 59.905 45.833 0.00 0.00 0.00 3.86
1390 1896 6.115446 TCTGACTTGACCATGTTTATCCATC 58.885 40.000 0.00 0.00 0.00 3.51
1426 1932 4.952262 TCAGCATATTGAACTGAACTGC 57.048 40.909 0.00 0.00 37.49 4.40
1524 2030 4.785511 TGTTAGCTACTCTCTGGTGAAC 57.214 45.455 0.00 0.00 0.00 3.18
1525 2031 4.149598 TGTTAGCTACTCTCTGGTGAACA 58.850 43.478 0.00 0.00 0.00 3.18
1540 2046 6.633500 TGGTGAACAGTTTTTCTGAATAGG 57.367 37.500 1.79 0.00 46.27 2.57
1620 2128 6.405278 AGGTTTCCTTATTGAACTTGGTTG 57.595 37.500 0.00 0.00 0.00 3.77
1765 2273 6.149633 GCCTTCGTTGTGAAACTATTTGAAT 58.850 36.000 0.00 0.00 38.04 2.57
1781 2289 3.581024 TGAATGCTTCCACAAAGATGC 57.419 42.857 0.00 0.00 37.12 3.91
1853 2362 8.615878 AGTACACTGATATGCACAAGTTTTTA 57.384 30.769 0.00 0.00 0.00 1.52
2118 2628 2.154462 CAAACCATCCATATCCCGAGC 58.846 52.381 0.00 0.00 0.00 5.03
2193 2703 2.135933 CTTATCTTCTTTAGCCCGCCG 58.864 52.381 0.00 0.00 0.00 6.46
2334 2844 0.873312 CTGTCATCCATCGCGACCAG 60.873 60.000 12.93 4.21 0.00 4.00
2562 3072 3.181476 ACCAACACCAGAAGTTCAATTGC 60.181 43.478 5.50 0.00 0.00 3.56
2607 3117 0.326595 TCATAAGGGTCAAGCGCCAA 59.673 50.000 2.29 0.00 0.00 4.52
2721 3231 3.058224 GCCATTACAGCTCGTTCTGTTTT 60.058 43.478 15.14 3.98 44.26 2.43
2737 3247 0.178947 TTTTCCGGCCAAGGACCATT 60.179 50.000 2.24 0.00 40.56 3.16
2835 3345 0.324830 AGGAGCTCGTAGAAGCCCTT 60.325 55.000 7.25 0.00 34.09 3.95
2840 3350 2.003301 GCTCGTAGAAGCCCTTGAAAG 58.997 52.381 0.00 0.00 34.09 2.62
2841 3351 2.613223 GCTCGTAGAAGCCCTTGAAAGT 60.613 50.000 0.00 0.00 34.09 2.66
2842 3352 3.254892 CTCGTAGAAGCCCTTGAAAGTC 58.745 50.000 0.00 0.00 34.09 3.01
2851 3361 0.113190 CCTTGAAAGTCCTGCCCCTT 59.887 55.000 0.00 0.00 0.00 3.95
2856 3366 2.081585 AAAGTCCTGCCCCTTCCCAC 62.082 60.000 0.00 0.00 0.00 4.61
2859 3369 4.748144 CCTGCCCCTTCCCACAGC 62.748 72.222 0.00 0.00 0.00 4.40
2871 3381 1.239968 CCCACAGCCAGCAAGACTTC 61.240 60.000 0.00 0.00 0.00 3.01
3002 3513 7.289310 GGTACTCTGAACTCCCTAACTAGTAT 58.711 42.308 0.00 0.00 0.00 2.12
3003 3514 8.435982 GGTACTCTGAACTCCCTAACTAGTATA 58.564 40.741 0.00 0.00 0.00 1.47
3004 3515 9.271828 GTACTCTGAACTCCCTAACTAGTATAC 57.728 40.741 0.00 0.00 0.00 1.47
3005 3516 7.870027 ACTCTGAACTCCCTAACTAGTATACA 58.130 38.462 5.50 0.00 0.00 2.29
3006 3517 8.334734 ACTCTGAACTCCCTAACTAGTATACAA 58.665 37.037 5.50 0.00 0.00 2.41
3007 3518 9.357161 CTCTGAACTCCCTAACTAGTATACAAT 57.643 37.037 5.50 0.00 0.00 2.71
3044 3559 3.512680 TGGTACTTTTGTGGCAAAAACG 58.487 40.909 1.39 3.53 0.00 3.60
3047 3562 4.208253 GGTACTTTTGTGGCAAAAACGATG 59.792 41.667 13.02 2.65 0.00 3.84
3062 3577 2.146342 ACGATGTGGCTGAAGTTTGAG 58.854 47.619 0.00 0.00 0.00 3.02
3067 3582 3.351740 TGTGGCTGAAGTTTGAGTTGAA 58.648 40.909 0.00 0.00 0.00 2.69
3068 3583 3.128589 TGTGGCTGAAGTTTGAGTTGAAC 59.871 43.478 0.00 0.00 0.00 3.18
3138 3657 4.142924 GGCTTGTGTTTTTGGACAAAGTTG 60.143 41.667 0.00 0.00 31.83 3.16
3139 3658 4.450757 GCTTGTGTTTTTGGACAAAGTTGT 59.549 37.500 0.00 0.00 45.65 3.32
3140 3659 5.635700 GCTTGTGTTTTTGGACAAAGTTGTA 59.364 36.000 0.00 0.00 42.43 2.41
3200 3719 0.535780 CAGGTGCCAGTGACACATGT 60.536 55.000 15.03 0.00 43.02 3.21
3201 3720 0.250467 AGGTGCCAGTGACACATGTC 60.250 55.000 11.90 5.02 44.97 3.06
3289 3811 5.338632 TGTACTCTCCCAGGAGTAATTTGA 58.661 41.667 13.36 0.00 46.27 2.69
3350 3872 3.936372 TTCAGAAGTCGGAAGTGTAGG 57.064 47.619 0.00 0.00 0.00 3.18
3451 3978 0.254178 AAGCCAACCGCATCTCATCT 59.746 50.000 0.00 0.00 41.38 2.90
3452 3979 0.254178 AGCCAACCGCATCTCATCTT 59.746 50.000 0.00 0.00 41.38 2.40
3453 3980 1.486310 AGCCAACCGCATCTCATCTTA 59.514 47.619 0.00 0.00 41.38 2.10
3455 3982 2.481952 GCCAACCGCATCTCATCTTATC 59.518 50.000 0.00 0.00 37.47 1.75
3459 3986 2.887783 ACCGCATCTCATCTTATCTCGT 59.112 45.455 0.00 0.00 0.00 4.18
3461 3988 3.304996 CCGCATCTCATCTTATCTCGTGT 60.305 47.826 0.00 0.00 0.00 4.49
3462 3989 3.911365 CGCATCTCATCTTATCTCGTGTC 59.089 47.826 0.00 0.00 0.00 3.67
3463 3990 3.911365 GCATCTCATCTTATCTCGTGTCG 59.089 47.826 0.00 0.00 0.00 4.35
3464 3991 4.471373 CATCTCATCTTATCTCGTGTCGG 58.529 47.826 0.00 0.00 0.00 4.79
3465 3992 2.879026 TCTCATCTTATCTCGTGTCGGG 59.121 50.000 0.00 0.00 0.00 5.14
3466 3993 2.879026 CTCATCTTATCTCGTGTCGGGA 59.121 50.000 0.00 0.00 41.88 5.14
3468 3995 3.502595 TCATCTTATCTCGTGTCGGGATC 59.497 47.826 7.80 0.00 44.27 3.36
3469 3996 2.927028 TCTTATCTCGTGTCGGGATCA 58.073 47.619 7.80 0.00 44.27 2.92
3517 4045 1.075601 ATTCCCCACTTTCTCAGGCA 58.924 50.000 0.00 0.00 0.00 4.75
3518 4046 0.401738 TTCCCCACTTTCTCAGGCAG 59.598 55.000 0.00 0.00 0.00 4.85
3519 4047 0.473694 TCCCCACTTTCTCAGGCAGA 60.474 55.000 0.00 0.00 0.00 4.26
3520 4048 0.035630 CCCCACTTTCTCAGGCAGAG 60.036 60.000 0.00 0.00 46.14 3.35
3525 4053 0.321387 CTTTCTCAGGCAGAGCAGCA 60.321 55.000 1.43 0.00 44.35 4.41
3547 4075 2.653448 CACCAGCTCGATCTCGCG 60.653 66.667 0.00 0.00 39.60 5.87
3548 4076 2.824489 ACCAGCTCGATCTCGCGA 60.824 61.111 9.26 9.26 39.60 5.87
3549 4077 2.352915 CCAGCTCGATCTCGCGAC 60.353 66.667 3.71 0.00 39.60 5.19
3550 4078 2.405191 CAGCTCGATCTCGCGACA 59.595 61.111 3.71 0.00 39.60 4.35
3551 4079 1.653835 CAGCTCGATCTCGCGACAG 60.654 63.158 3.71 0.00 39.60 3.51
3552 4080 3.021788 GCTCGATCTCGCGACAGC 61.022 66.667 3.71 0.00 39.60 4.40
3553 4081 2.352915 CTCGATCTCGCGACAGCC 60.353 66.667 3.71 0.00 41.18 4.85
3554 4082 2.824489 TCGATCTCGCGACAGCCT 60.824 61.111 3.71 0.00 41.18 4.58
3555 4083 2.352915 CGATCTCGCGACAGCCTC 60.353 66.667 3.71 0.00 41.18 4.70
3556 4084 2.352915 GATCTCGCGACAGCCTCG 60.353 66.667 3.71 0.00 45.97 4.63
3557 4085 3.114647 GATCTCGCGACAGCCTCGT 62.115 63.158 3.71 0.00 44.92 4.18
3558 4086 2.975167 GATCTCGCGACAGCCTCGTC 62.975 65.000 3.71 0.00 44.92 4.20
3559 4087 4.838486 CTCGCGACAGCCTCGTCC 62.838 72.222 3.71 0.00 44.92 4.79
3593 4121 4.819761 GCCTGCGCATGGAGACGA 62.820 66.667 24.32 0.00 35.14 4.20
3724 4258 4.308458 TGGGCGGTCGTGTTCCTG 62.308 66.667 0.00 0.00 0.00 3.86
3761 4295 3.998672 CGTGGGGCGTGTACCAGT 61.999 66.667 0.00 0.00 37.45 4.00
3850 4384 2.498726 CTCGGGAAGCTGAGCCTC 59.501 66.667 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
326 333 1.464608 ACACCAACGCTCGATCAATTG 59.535 47.619 0.00 0.00 0.00 2.32
487 501 4.854399 TCCTTTGATGTTTAAACTGTGCG 58.146 39.130 18.72 4.07 0.00 5.34
571 873 9.131791 TCTCCAGTATTTTTAAGCAAGAGTTTT 57.868 29.630 0.00 0.00 0.00 2.43
574 876 8.325046 AGATCTCCAGTATTTTTAAGCAAGAGT 58.675 33.333 0.00 0.00 0.00 3.24
587 889 5.600484 CCTCAGTTACCAGATCTCCAGTATT 59.400 44.000 0.00 0.00 0.00 1.89
588 890 5.144100 CCTCAGTTACCAGATCTCCAGTAT 58.856 45.833 0.00 0.00 0.00 2.12
589 891 4.017407 ACCTCAGTTACCAGATCTCCAGTA 60.017 45.833 0.00 0.00 0.00 2.74
590 892 3.245803 ACCTCAGTTACCAGATCTCCAGT 60.246 47.826 0.00 0.00 0.00 4.00
629 931 2.359354 ACCGCCGCATTAACAGCA 60.359 55.556 3.04 0.00 0.00 4.41
685 987 9.920946 ACATGTACTACATTTCCTGGAAATTAT 57.079 29.630 27.71 21.27 39.82 1.28
783 1085 6.649557 CACGGAAACTCTAATGTAGGAAAACT 59.350 38.462 0.00 0.00 0.00 2.66
833 1136 1.682478 TAGACAGGAGGGAGTCAGGA 58.318 55.000 0.00 0.00 37.23 3.86
884 1187 2.408271 ACATATCCTGGTGCACTGTG 57.592 50.000 17.98 7.50 0.00 3.66
906 1209 5.125417 TGAATTAAATGGGCGGAAGAAGAAG 59.875 40.000 0.00 0.00 0.00 2.85
910 1213 4.340617 ACTGAATTAAATGGGCGGAAGAA 58.659 39.130 0.00 0.00 0.00 2.52
1065 1369 1.987770 CAGAATGGCGAATGCACAAAC 59.012 47.619 0.00 0.00 45.35 2.93
1108 1412 7.170965 ACTCCATATGTGATTGAACAGTTTCT 58.829 34.615 1.24 0.00 32.52 2.52
1150 1454 9.322773 GTCTAAACTTGAATACCCCATAACTAC 57.677 37.037 0.00 0.00 0.00 2.73
1190 1494 6.472016 TGATCAAGCAGATTAAACACCACTA 58.528 36.000 0.00 0.00 37.00 2.74
1258 1562 2.224784 ACCGCGACACTTATTTTTGGAC 59.775 45.455 8.23 0.00 0.00 4.02
1299 1603 3.816523 TCCCAAAATAAGTGTCGTGGTTC 59.183 43.478 0.00 0.00 0.00 3.62
1322 1630 6.500751 AGAAGAAAACAATAGTACTCCCTCCA 59.499 38.462 0.00 0.00 0.00 3.86
1326 1634 6.128254 GCACAGAAGAAAACAATAGTACTCCC 60.128 42.308 0.00 0.00 0.00 4.30
1426 1932 9.486857 CGAATGCTGCTTGATAAGATAATATTG 57.513 33.333 0.00 0.00 0.00 1.90
1524 2030 8.454106 CAACTATCCACCTATTCAGAAAAACTG 58.546 37.037 0.00 0.00 46.97 3.16
1525 2031 8.164070 ACAACTATCCACCTATTCAGAAAAACT 58.836 33.333 0.00 0.00 0.00 2.66
1528 2034 8.934023 AAACAACTATCCACCTATTCAGAAAA 57.066 30.769 0.00 0.00 0.00 2.29
1532 2038 7.921786 TGAAAACAACTATCCACCTATTCAG 57.078 36.000 0.00 0.00 0.00 3.02
1569 2075 9.525409 AATGTAACAAGTTAGACGATACCATAC 57.475 33.333 0.00 0.00 0.00 2.39
1572 2078 9.577110 CTTAATGTAACAAGTTAGACGATACCA 57.423 33.333 0.00 0.00 0.00 3.25
1620 2128 7.956328 AAATGGAAAGGGGAGTAAATAAGAC 57.044 36.000 0.00 0.00 0.00 3.01
1765 2273 0.599558 GCTGCATCTTTGTGGAAGCA 59.400 50.000 0.00 0.00 37.55 3.91
1781 2289 7.274250 GCTAATAAAGACACCAAATTCTTGCTG 59.726 37.037 0.00 0.00 32.26 4.41
1917 2427 9.178758 CCAAGCTTCTTTATAATTAGACCAACT 57.821 33.333 0.00 0.00 0.00 3.16
1980 2490 3.819337 CCTTGCAGATATGGTTCCATGAG 59.181 47.826 13.86 3.27 0.00 2.90
2193 2703 1.751927 CAGCTGGATGGTTCCCTGC 60.752 63.158 5.57 0.00 45.43 4.85
2334 2844 2.415512 GCGTGTCACTTGGTATCCTTTC 59.584 50.000 0.65 0.00 0.00 2.62
2457 2967 3.640407 GGCTCTGCCCACACCTCA 61.640 66.667 0.00 0.00 44.06 3.86
2562 3072 3.391382 GACGGGGTCTCCACCAGG 61.391 72.222 0.00 0.00 45.94 4.45
2721 3231 2.674754 GAATGGTCCTTGGCCGGA 59.325 61.111 5.05 0.00 0.00 5.14
2737 3247 1.876416 GCAGTTTGCCTTCAGGTACGA 60.876 52.381 0.00 0.00 37.42 3.43
2835 3345 1.767692 GGAAGGGGCAGGACTTTCA 59.232 57.895 0.00 0.00 0.00 2.69
2840 3350 3.256960 TGTGGGAAGGGGCAGGAC 61.257 66.667 0.00 0.00 0.00 3.85
2841 3351 2.935481 CTGTGGGAAGGGGCAGGA 60.935 66.667 0.00 0.00 0.00 3.86
2842 3352 4.748144 GCTGTGGGAAGGGGCAGG 62.748 72.222 0.00 0.00 0.00 4.85
2851 3361 1.708993 AAGTCTTGCTGGCTGTGGGA 61.709 55.000 0.00 0.00 0.00 4.37
2856 3366 1.354040 CGTAGAAGTCTTGCTGGCTG 58.646 55.000 0.00 0.00 0.00 4.85
2859 3369 0.741221 GCCCGTAGAAGTCTTGCTGG 60.741 60.000 0.00 0.00 0.00 4.85
2886 3396 2.158900 CCATAGGAATGGTTCTGCTCGT 60.159 50.000 0.00 0.00 46.68 4.18
2913 3423 5.696724 CACGTTTAATCACTTCAGAGAAGGT 59.303 40.000 11.08 0.00 0.00 3.50
3044 3559 3.565482 TCAACTCAAACTTCAGCCACATC 59.435 43.478 0.00 0.00 0.00 3.06
3047 3562 3.489229 GGTTCAACTCAAACTTCAGCCAC 60.489 47.826 0.00 0.00 0.00 5.01
3138 3657 5.353400 GCAAACCCAGAACCTGTAATACTAC 59.647 44.000 0.00 0.00 0.00 2.73
3139 3658 5.493809 GCAAACCCAGAACCTGTAATACTA 58.506 41.667 0.00 0.00 0.00 1.82
3140 3659 4.332828 GCAAACCCAGAACCTGTAATACT 58.667 43.478 0.00 0.00 0.00 2.12
3200 3719 5.934043 CAGATATGCGACCAAATATTCTGGA 59.066 40.000 18.02 2.65 37.40 3.86
3201 3720 5.702670 ACAGATATGCGACCAAATATTCTGG 59.297 40.000 12.43 12.43 40.05 3.86
3375 3901 1.538419 CGGAGAAGAAGCGGGGATAAC 60.538 57.143 0.00 0.00 0.00 1.89
3451 3978 3.429822 GGTTTGATCCCGACACGAGATAA 60.430 47.826 0.00 0.00 0.00 1.75
3452 3979 2.100252 GGTTTGATCCCGACACGAGATA 59.900 50.000 0.00 0.00 0.00 1.98
3453 3980 1.134788 GGTTTGATCCCGACACGAGAT 60.135 52.381 0.00 0.00 0.00 2.75
3455 3982 0.739813 GGGTTTGATCCCGACACGAG 60.740 60.000 0.00 0.00 37.93 4.18
3464 3991 1.231958 TGACGCGTTGGGTTTGATCC 61.232 55.000 15.53 0.00 0.00 3.36
3465 3992 0.589223 TTGACGCGTTGGGTTTGATC 59.411 50.000 15.53 0.00 0.00 2.92
3466 3993 0.309612 GTTGACGCGTTGGGTTTGAT 59.690 50.000 15.53 0.00 0.00 2.57
3467 3994 1.025113 TGTTGACGCGTTGGGTTTGA 61.025 50.000 15.53 0.00 0.00 2.69
3468 3995 0.863957 GTGTTGACGCGTTGGGTTTG 60.864 55.000 15.53 0.00 0.00 2.93
3469 3996 1.430228 GTGTTGACGCGTTGGGTTT 59.570 52.632 15.53 0.00 0.00 3.27
3491 4019 2.307686 GAGAAAGTGGGGAATGGGTACA 59.692 50.000 0.00 0.00 0.00 2.90
3495 4023 1.341383 CCTGAGAAAGTGGGGAATGGG 60.341 57.143 0.00 0.00 0.00 4.00
3517 4045 3.903616 CTGGTGCTGCTGCTGCTCT 62.904 63.158 27.67 0.00 40.48 4.09
3518 4046 3.432588 CTGGTGCTGCTGCTGCTC 61.433 66.667 27.67 24.06 40.48 4.26
3578 4106 2.887568 GGTCGTCTCCATGCGCAG 60.888 66.667 18.32 8.11 0.00 5.18
3579 4107 4.794439 CGGTCGTCTCCATGCGCA 62.794 66.667 14.96 14.96 0.00 6.09
3590 4118 3.793144 GTAGGACGTCGCGGTCGT 61.793 66.667 24.28 24.28 44.27 4.34
3712 4246 1.292541 GAGGACCAGGAACACGACC 59.707 63.158 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.