Multiple sequence alignment - TraesCS3B01G132600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G132600 chr3B 100.000 2975 0 0 1 2975 115210812 115213786 0.000000e+00 5494.0
1 TraesCS3B01G132600 chr3B 82.422 256 36 7 2287 2540 140437592 140437840 6.460000e-52 215.0
2 TraesCS3B01G132600 chr3B 94.118 136 6 2 1 134 157383780 157383645 3.890000e-49 206.0
3 TraesCS3B01G132600 chr3B 81.395 86 16 0 749 834 107640674 107640589 1.480000e-08 71.3
4 TraesCS3B01G132600 chr3D 92.979 1353 64 10 952 2288 68880564 68881901 0.000000e+00 1943.0
5 TraesCS3B01G132600 chr3D 86.288 722 49 23 2287 2963 515230321 515229605 0.000000e+00 739.0
6 TraesCS3B01G132600 chr3D 87.879 165 20 0 2292 2456 134488492 134488656 8.410000e-46 195.0
7 TraesCS3B01G132600 chr3D 87.654 162 18 2 134 293 68870292 68870453 1.410000e-43 187.0
8 TraesCS3B01G132600 chr3D 92.913 127 9 0 4 130 1193951 1193825 5.060000e-43 185.0
9 TraesCS3B01G132600 chr3D 89.655 87 7 1 291 375 68870554 68870640 3.140000e-20 110.0
10 TraesCS3B01G132600 chr3D 84.211 76 10 2 749 823 586876659 586876733 4.110000e-09 73.1
11 TraesCS3B01G132600 chr3A 89.815 648 42 2 1371 2018 80505841 80505218 0.000000e+00 809.0
12 TraesCS3B01G132600 chr3A 89.362 611 61 1 952 1558 80506060 80505450 0.000000e+00 765.0
13 TraesCS3B01G132600 chr3A 86.053 380 32 8 291 657 80506830 80506459 3.600000e-104 388.0
14 TraesCS3B01G132600 chr3A 91.975 162 12 1 133 293 80507094 80506933 2.980000e-55 226.0
15 TraesCS3B01G132600 chr3A 86.709 158 16 4 2069 2224 80505113 80504959 1.420000e-38 171.0
16 TraesCS3B01G132600 chr5B 87.464 694 49 4 2287 2975 293450127 293450787 0.000000e+00 765.0
17 TraesCS3B01G132600 chr5B 93.130 131 9 0 1 131 421157049 421156919 3.030000e-45 193.0
18 TraesCS3B01G132600 chr4A 85.532 705 45 16 2308 2967 58117569 58116877 0.000000e+00 684.0
19 TraesCS3B01G132600 chr7A 80.562 427 61 12 2284 2695 487476047 487476466 2.880000e-80 309.0
20 TraesCS3B01G132600 chr7B 80.739 379 60 8 2290 2659 199290557 199290183 1.750000e-72 283.0
21 TraesCS3B01G132600 chr7B 92.188 128 10 0 4 131 642231640 642231513 6.550000e-42 182.0
22 TraesCS3B01G132600 chr7B 82.222 90 13 2 738 824 689967452 689967541 1.140000e-09 75.0
23 TraesCS3B01G132600 chr6D 89.305 187 16 4 2289 2473 454124683 454124499 6.410000e-57 231.0
24 TraesCS3B01G132600 chr2B 87.368 190 24 0 2287 2476 404405292 404405103 4.990000e-53 219.0
25 TraesCS3B01G132600 chr2B 85.714 77 8 2 749 824 760299952 760300026 8.840000e-11 78.7
26 TraesCS3B01G132600 chr6A 86.911 191 23 2 2284 2473 21946443 21946632 2.320000e-51 213.0
27 TraesCS3B01G132600 chr4B 93.798 129 7 1 1 129 427059704 427059831 3.030000e-45 193.0
28 TraesCS3B01G132600 chr6B 92.537 134 9 1 4 137 244341970 244341838 1.090000e-44 191.0
29 TraesCS3B01G132600 chr6B 92.366 131 10 0 1 131 365611670 365611540 1.410000e-43 187.0
30 TraesCS3B01G132600 chr1B 91.241 137 8 3 1 135 477140862 477140728 1.820000e-42 183.0
31 TraesCS3B01G132600 chrUn 92.188 128 10 0 4 131 209271507 209271380 6.550000e-42 182.0
32 TraesCS3B01G132600 chr7D 83.957 187 30 0 2287 2473 13931237 13931423 2.360000e-41 180.0
33 TraesCS3B01G132600 chr7D 82.039 206 33 4 2287 2490 55125523 55125320 3.940000e-39 172.0
34 TraesCS3B01G132600 chr7D 84.932 73 11 0 752 824 605785864 605785792 1.140000e-09 75.0
35 TraesCS3B01G132600 chr1D 87.324 71 8 1 754 824 349546077 349546008 2.460000e-11 80.5
36 TraesCS3B01G132600 chr1A 82.895 76 12 1 749 824 449838594 449838520 1.910000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G132600 chr3B 115210812 115213786 2974 False 5494.0 5494 100.0000 1 2975 1 chr3B.!!$F1 2974
1 TraesCS3B01G132600 chr3D 68880564 68881901 1337 False 1943.0 1943 92.9790 952 2288 1 chr3D.!!$F1 1336
2 TraesCS3B01G132600 chr3D 515229605 515230321 716 True 739.0 739 86.2880 2287 2963 1 chr3D.!!$R2 676
3 TraesCS3B01G132600 chr3A 80504959 80507094 2135 True 471.8 809 88.7828 133 2224 5 chr3A.!!$R1 2091
4 TraesCS3B01G132600 chr5B 293450127 293450787 660 False 765.0 765 87.4640 2287 2975 1 chr5B.!!$F1 688
5 TraesCS3B01G132600 chr4A 58116877 58117569 692 True 684.0 684 85.5320 2308 2967 1 chr4A.!!$R1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 1132 0.025001 CTCCTTTGCGTATTCGTGCG 59.975 55.0 0.0 0.0 39.49 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2807 0.03563 AGTTGCTCTGATGCCAGGTC 60.036 55.0 0.0 0.0 40.76 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.788960 TTGTTTAAAAATTATGGGTTTGTTTGC 57.211 25.926 0.00 0.00 0.00 3.68
27 28 8.122952 TGTTTAAAAATTATGGGTTTGTTTGCG 58.877 29.630 0.00 0.00 0.00 4.85
28 29 5.681337 AAAAATTATGGGTTTGTTTGCGG 57.319 34.783 0.00 0.00 0.00 5.69
29 30 4.344359 AAATTATGGGTTTGTTTGCGGT 57.656 36.364 0.00 0.00 0.00 5.68
30 31 4.344359 AATTATGGGTTTGTTTGCGGTT 57.656 36.364 0.00 0.00 0.00 4.44
31 32 3.821421 TTATGGGTTTGTTTGCGGTTT 57.179 38.095 0.00 0.00 0.00 3.27
32 33 2.232756 ATGGGTTTGTTTGCGGTTTC 57.767 45.000 0.00 0.00 0.00 2.78
33 34 1.187087 TGGGTTTGTTTGCGGTTTCT 58.813 45.000 0.00 0.00 0.00 2.52
34 35 2.376109 TGGGTTTGTTTGCGGTTTCTA 58.624 42.857 0.00 0.00 0.00 2.10
35 36 2.359531 TGGGTTTGTTTGCGGTTTCTAG 59.640 45.455 0.00 0.00 0.00 2.43
36 37 2.359848 GGGTTTGTTTGCGGTTTCTAGT 59.640 45.455 0.00 0.00 0.00 2.57
37 38 3.549423 GGGTTTGTTTGCGGTTTCTAGTC 60.549 47.826 0.00 0.00 0.00 2.59
38 39 3.314357 GGTTTGTTTGCGGTTTCTAGTCT 59.686 43.478 0.00 0.00 0.00 3.24
39 40 4.279659 GTTTGTTTGCGGTTTCTAGTCTG 58.720 43.478 0.00 0.00 0.00 3.51
40 41 1.871039 TGTTTGCGGTTTCTAGTCTGC 59.129 47.619 8.41 8.41 36.59 4.26
41 42 1.197036 GTTTGCGGTTTCTAGTCTGCC 59.803 52.381 11.33 1.31 35.35 4.85
42 43 0.394938 TTGCGGTTTCTAGTCTGCCA 59.605 50.000 11.33 1.71 35.35 4.92
43 44 0.320421 TGCGGTTTCTAGTCTGCCAC 60.320 55.000 11.33 0.00 35.35 5.01
44 45 1.019805 GCGGTTTCTAGTCTGCCACC 61.020 60.000 0.00 0.00 0.00 4.61
45 46 0.736325 CGGTTTCTAGTCTGCCACCG 60.736 60.000 0.00 0.00 41.08 4.94
46 47 1.019805 GGTTTCTAGTCTGCCACCGC 61.020 60.000 0.00 0.00 0.00 5.68
47 48 0.320421 GTTTCTAGTCTGCCACCGCA 60.320 55.000 0.00 0.00 44.78 5.69
48 49 0.394938 TTTCTAGTCTGCCACCGCAA 59.605 50.000 0.00 0.00 46.66 4.85
49 50 0.613260 TTCTAGTCTGCCACCGCAAT 59.387 50.000 0.00 0.00 46.66 3.56
50 51 0.613260 TCTAGTCTGCCACCGCAATT 59.387 50.000 0.00 0.00 46.66 2.32
51 52 1.003118 TCTAGTCTGCCACCGCAATTT 59.997 47.619 0.00 0.00 46.66 1.82
52 53 1.812571 CTAGTCTGCCACCGCAATTTT 59.187 47.619 0.00 0.00 46.66 1.82
53 54 0.598065 AGTCTGCCACCGCAATTTTC 59.402 50.000 0.00 0.00 46.66 2.29
54 55 0.313672 GTCTGCCACCGCAATTTTCA 59.686 50.000 0.00 0.00 46.66 2.69
55 56 0.597568 TCTGCCACCGCAATTTTCAG 59.402 50.000 0.00 0.00 46.66 3.02
56 57 1.006337 TGCCACCGCAATTTTCAGC 60.006 52.632 0.00 0.00 43.74 4.26
57 58 1.737735 GCCACCGCAATTTTCAGCC 60.738 57.895 0.00 0.00 34.03 4.85
58 59 1.079888 CCACCGCAATTTTCAGCCC 60.080 57.895 0.00 0.00 0.00 5.19
59 60 1.444212 CACCGCAATTTTCAGCCCG 60.444 57.895 0.00 0.00 0.00 6.13
60 61 1.901464 ACCGCAATTTTCAGCCCGT 60.901 52.632 0.00 0.00 0.00 5.28
61 62 0.606944 ACCGCAATTTTCAGCCCGTA 60.607 50.000 0.00 0.00 0.00 4.02
62 63 0.738389 CCGCAATTTTCAGCCCGTAT 59.262 50.000 0.00 0.00 0.00 3.06
63 64 1.944024 CCGCAATTTTCAGCCCGTATA 59.056 47.619 0.00 0.00 0.00 1.47
64 65 2.356382 CCGCAATTTTCAGCCCGTATAA 59.644 45.455 0.00 0.00 0.00 0.98
65 66 3.548014 CCGCAATTTTCAGCCCGTATAAG 60.548 47.826 0.00 0.00 0.00 1.73
66 67 3.372060 GCAATTTTCAGCCCGTATAAGC 58.628 45.455 0.00 0.00 0.00 3.09
67 68 3.617669 CAATTTTCAGCCCGTATAAGCG 58.382 45.455 0.00 0.00 0.00 4.68
68 69 2.389962 TTTTCAGCCCGTATAAGCGT 57.610 45.000 0.00 0.00 0.00 5.07
69 70 1.930567 TTTCAGCCCGTATAAGCGTC 58.069 50.000 0.00 0.00 0.00 5.19
70 71 0.103572 TTCAGCCCGTATAAGCGTCC 59.896 55.000 0.00 0.00 0.00 4.79
71 72 1.300697 CAGCCCGTATAAGCGTCCC 60.301 63.158 0.00 0.00 0.00 4.46
72 73 2.030113 GCCCGTATAAGCGTCCCC 59.970 66.667 0.00 0.00 0.00 4.81
73 74 2.337532 CCCGTATAAGCGTCCCCG 59.662 66.667 0.00 0.00 37.07 5.73
74 75 2.492773 CCCGTATAAGCGTCCCCGT 61.493 63.158 0.00 0.00 36.15 5.28
75 76 1.172180 CCCGTATAAGCGTCCCCGTA 61.172 60.000 0.00 0.00 36.15 4.02
76 77 0.040067 CCGTATAAGCGTCCCCGTAC 60.040 60.000 0.00 0.00 36.15 3.67
77 78 0.384725 CGTATAAGCGTCCCCGTACG 60.385 60.000 8.69 8.69 45.58 3.67
78 79 0.944386 GTATAAGCGTCCCCGTACGA 59.056 55.000 18.76 0.00 45.68 3.43
79 80 0.944386 TATAAGCGTCCCCGTACGAC 59.056 55.000 18.76 6.15 45.68 4.34
80 81 1.728490 ATAAGCGTCCCCGTACGACC 61.728 60.000 18.76 1.74 45.68 4.79
81 82 2.819984 TAAGCGTCCCCGTACGACCT 62.820 60.000 18.76 4.03 45.68 3.85
82 83 4.487412 GCGTCCCCGTACGACCTG 62.487 72.222 18.76 0.00 45.68 4.00
83 84 4.487412 CGTCCCCGTACGACCTGC 62.487 72.222 18.76 1.90 45.68 4.85
84 85 3.376078 GTCCCCGTACGACCTGCA 61.376 66.667 18.76 0.00 0.00 4.41
85 86 2.601067 TCCCCGTACGACCTGCAA 60.601 61.111 18.76 0.00 0.00 4.08
86 87 2.208619 TCCCCGTACGACCTGCAAA 61.209 57.895 18.76 0.00 0.00 3.68
87 88 2.030958 CCCCGTACGACCTGCAAAC 61.031 63.158 18.76 0.00 0.00 2.93
88 89 1.301087 CCCGTACGACCTGCAAACA 60.301 57.895 18.76 0.00 0.00 2.83
89 90 1.562575 CCCGTACGACCTGCAAACAC 61.563 60.000 18.76 0.00 0.00 3.32
90 91 0.876777 CCGTACGACCTGCAAACACA 60.877 55.000 18.76 0.00 0.00 3.72
91 92 0.506932 CGTACGACCTGCAAACACAG 59.493 55.000 10.44 0.00 37.42 3.66
92 93 1.578583 GTACGACCTGCAAACACAGT 58.421 50.000 0.00 0.00 35.83 3.55
93 94 1.937899 GTACGACCTGCAAACACAGTT 59.062 47.619 0.00 0.00 35.83 3.16
94 95 1.459450 ACGACCTGCAAACACAGTTT 58.541 45.000 0.00 0.00 35.83 2.66
95 96 2.634600 ACGACCTGCAAACACAGTTTA 58.365 42.857 0.00 0.00 35.83 2.01
96 97 2.353579 ACGACCTGCAAACACAGTTTAC 59.646 45.455 0.00 0.00 35.83 2.01
97 98 2.353269 CGACCTGCAAACACAGTTTACA 59.647 45.455 0.00 0.00 35.83 2.41
98 99 3.546020 CGACCTGCAAACACAGTTTACAG 60.546 47.826 13.36 13.36 35.83 2.74
99 100 2.687935 ACCTGCAAACACAGTTTACAGG 59.312 45.455 27.90 27.90 46.83 4.00
100 101 2.687935 CCTGCAAACACAGTTTACAGGT 59.312 45.455 24.10 0.00 38.69 4.00
101 102 3.243068 CCTGCAAACACAGTTTACAGGTC 60.243 47.826 24.10 2.40 38.69 3.85
102 103 2.353269 TGCAAACACAGTTTACAGGTCG 59.647 45.455 0.00 0.00 0.00 4.79
103 104 2.286772 GCAAACACAGTTTACAGGTCGG 60.287 50.000 0.00 0.00 0.00 4.79
104 105 1.589803 AACACAGTTTACAGGTCGGC 58.410 50.000 0.00 0.00 0.00 5.54
105 106 0.466543 ACACAGTTTACAGGTCGGCA 59.533 50.000 0.00 0.00 0.00 5.69
106 107 1.134340 ACACAGTTTACAGGTCGGCAA 60.134 47.619 0.00 0.00 0.00 4.52
107 108 1.944024 CACAGTTTACAGGTCGGCAAA 59.056 47.619 0.00 0.00 0.00 3.68
108 109 2.356382 CACAGTTTACAGGTCGGCAAAA 59.644 45.455 0.00 0.00 0.00 2.44
109 110 3.004315 CACAGTTTACAGGTCGGCAAAAT 59.996 43.478 0.00 0.00 0.00 1.82
110 111 3.004315 ACAGTTTACAGGTCGGCAAAATG 59.996 43.478 0.00 0.00 33.50 2.32
111 112 2.030274 AGTTTACAGGTCGGCAAAATGC 60.030 45.455 0.00 0.00 44.08 3.56
112 113 0.519519 TTACAGGTCGGCAAAATGCG 59.480 50.000 0.00 0.00 46.21 4.73
113 114 1.302383 TACAGGTCGGCAAAATGCGG 61.302 55.000 3.77 3.77 46.21 5.69
117 118 3.573558 TCGGCAAAATGCGGAGTC 58.426 55.556 8.30 0.00 45.71 3.36
118 119 1.003839 TCGGCAAAATGCGGAGTCT 60.004 52.632 8.30 0.00 45.71 3.24
119 120 1.135315 CGGCAAAATGCGGAGTCTG 59.865 57.895 4.09 0.00 46.21 3.51
120 121 1.153958 GGCAAAATGCGGAGTCTGC 60.154 57.895 17.47 17.47 46.21 4.26
121 122 1.589716 GGCAAAATGCGGAGTCTGCT 61.590 55.000 24.05 7.71 46.21 4.24
122 123 1.086696 GCAAAATGCGGAGTCTGCTA 58.913 50.000 24.05 11.45 31.71 3.49
123 124 1.063174 GCAAAATGCGGAGTCTGCTAG 59.937 52.381 24.05 10.55 31.71 3.42
124 125 2.621338 CAAAATGCGGAGTCTGCTAGA 58.379 47.619 24.05 5.18 0.00 2.43
125 126 2.593346 AAATGCGGAGTCTGCTAGAG 57.407 50.000 24.05 0.00 0.00 2.43
126 127 1.479709 AATGCGGAGTCTGCTAGAGT 58.520 50.000 24.05 1.03 0.00 3.24
127 128 1.479709 ATGCGGAGTCTGCTAGAGTT 58.520 50.000 24.05 0.59 0.00 3.01
128 129 0.528017 TGCGGAGTCTGCTAGAGTTG 59.472 55.000 24.05 0.00 0.00 3.16
129 130 0.804156 GCGGAGTCTGCTAGAGTTGC 60.804 60.000 17.05 0.00 0.00 4.17
130 131 0.814457 CGGAGTCTGCTAGAGTTGCT 59.186 55.000 0.00 0.00 0.00 3.91
131 132 1.203523 CGGAGTCTGCTAGAGTTGCTT 59.796 52.381 0.00 0.00 0.00 3.91
136 137 5.120986 GGAGTCTGCTAGAGTTGCTTTTAAC 59.879 44.000 0.00 0.00 0.00 2.01
139 140 3.994392 CTGCTAGAGTTGCTTTTAACGGA 59.006 43.478 0.00 0.00 35.73 4.69
158 159 1.341209 GACAGACCAAAGGCCCAAAAG 59.659 52.381 0.00 0.00 0.00 2.27
161 162 1.499007 AGACCAAAGGCCCAAAAGAGA 59.501 47.619 0.00 0.00 0.00 3.10
218 220 9.158233 CCCTACTAAACACGATCATTTTTCTTA 57.842 33.333 0.00 0.00 0.00 2.10
257 259 6.612247 TTTCTAAAAGAATGAAGCACGTCA 57.388 33.333 0.00 0.00 33.67 4.35
293 295 4.106029 GGATGAATCCATGCATGCATAC 57.894 45.455 31.73 19.49 46.38 2.39
295 297 4.380550 GGATGAATCCATGCATGCATACAG 60.381 45.833 31.73 22.30 46.38 2.74
296 298 2.295070 TGAATCCATGCATGCATACAGC 59.705 45.455 31.73 19.54 45.96 4.40
297 299 7.286311 GATGAATCCATGCATGCATACAGCA 62.286 44.000 31.73 23.77 45.38 4.41
430 548 9.855021 AAATTAGAAACTGAATAAACCGAATGG 57.145 29.630 0.00 0.00 42.84 3.16
435 553 5.622770 ACTGAATAAACCGAATGGACAAC 57.377 39.130 0.00 0.00 39.21 3.32
436 554 4.153475 ACTGAATAAACCGAATGGACAACG 59.847 41.667 0.00 0.00 39.21 4.10
461 579 3.823281 TCAGAAGTTGACCACGGTTTA 57.177 42.857 0.00 0.00 0.00 2.01
464 582 1.875514 GAAGTTGACCACGGTTTACCC 59.124 52.381 0.00 0.00 0.00 3.69
531 649 7.678947 ATTTTAACTGTGATTGTGAGAGGAG 57.321 36.000 0.00 0.00 0.00 3.69
532 650 6.419484 TTTAACTGTGATTGTGAGAGGAGA 57.581 37.500 0.00 0.00 0.00 3.71
542 660 2.433604 TGTGAGAGGAGATGCTTCCATC 59.566 50.000 5.49 0.00 46.61 3.51
550 668 2.237393 GATGCTTCCATCGAGCTTCT 57.763 50.000 0.00 0.00 39.71 2.85
551 669 3.377346 GATGCTTCCATCGAGCTTCTA 57.623 47.619 0.00 0.00 39.71 2.10
552 670 3.924144 GATGCTTCCATCGAGCTTCTAT 58.076 45.455 0.00 0.00 39.71 1.98
553 671 3.103447 TGCTTCCATCGAGCTTCTATG 57.897 47.619 0.00 0.00 40.75 2.23
588 708 2.740714 GATGCAAGTGGACGCCGTC 61.741 63.158 9.15 9.15 0.00 4.79
602 722 1.019278 GCCGTCCACATGTTCGTGAT 61.019 55.000 0.00 0.00 39.34 3.06
695 874 9.684448 ATCTTTTATATATGAGTGTGTCTGACG 57.316 33.333 2.98 0.00 0.00 4.35
713 900 6.251801 GTCTGACGACTAAGACTTAATCAAGC 59.748 42.308 4.69 0.00 39.79 4.01
716 903 6.038997 ACGACTAAGACTTAATCAAGCCTT 57.961 37.500 4.69 0.00 38.02 4.35
796 983 5.752472 AGAATATTGCATCGACTGAGACTTG 59.248 40.000 0.00 0.00 0.00 3.16
797 984 2.084610 TTGCATCGACTGAGACTTGG 57.915 50.000 0.00 0.00 0.00 3.61
798 985 0.969149 TGCATCGACTGAGACTTGGT 59.031 50.000 0.00 0.00 0.00 3.67
802 989 3.614616 GCATCGACTGAGACTTGGTTAAG 59.385 47.826 0.00 0.00 39.86 1.85
827 1014 8.463607 AGTCTCACTTGACTTAGATTTAGTAGC 58.536 37.037 0.00 0.00 44.01 3.58
828 1015 7.703197 GTCTCACTTGACTTAGATTTAGTAGCC 59.297 40.741 0.00 0.00 34.39 3.93
831 1018 4.931661 TGACTTAGATTTAGTAGCCCCG 57.068 45.455 0.00 0.00 0.00 5.73
833 1020 4.713321 TGACTTAGATTTAGTAGCCCCGTT 59.287 41.667 0.00 0.00 0.00 4.44
836 1023 7.070322 TGACTTAGATTTAGTAGCCCCGTTTAT 59.930 37.037 0.00 0.00 0.00 1.40
872 1059 8.600449 ATTAGATTGCTAAAGAATTCTCTCCG 57.400 34.615 8.78 0.00 39.85 4.63
873 1060 5.983540 AGATTGCTAAAGAATTCTCTCCGT 58.016 37.500 8.78 0.00 0.00 4.69
877 1064 7.596749 TTGCTAAAGAATTCTCTCCGTAAAG 57.403 36.000 8.78 0.00 0.00 1.85
878 1065 5.581085 TGCTAAAGAATTCTCTCCGTAAAGC 59.419 40.000 8.78 9.25 0.00 3.51
879 1066 5.581085 GCTAAAGAATTCTCTCCGTAAAGCA 59.419 40.000 8.78 0.00 0.00 3.91
888 1075 6.015027 TCTCTCCGTAAAGCATATAAGAGC 57.985 41.667 0.00 0.00 31.30 4.09
909 1116 3.552294 GCTTACAGTGATCTAAACGCTCC 59.448 47.826 0.00 0.00 0.00 4.70
913 1120 3.997021 ACAGTGATCTAAACGCTCCTTTG 59.003 43.478 0.00 0.00 0.00 2.77
914 1121 3.003480 AGTGATCTAAACGCTCCTTTGC 58.997 45.455 0.00 0.00 0.00 3.68
923 1130 3.877801 GCTCCTTTGCGTATTCGTG 57.122 52.632 0.00 0.00 39.49 4.35
924 1131 0.247695 GCTCCTTTGCGTATTCGTGC 60.248 55.000 0.00 0.00 39.49 5.34
925 1132 0.025001 CTCCTTTGCGTATTCGTGCG 59.975 55.000 0.00 0.00 39.49 5.34
926 1133 0.668096 TCCTTTGCGTATTCGTGCGT 60.668 50.000 0.00 0.00 39.49 5.24
927 1134 0.247145 CCTTTGCGTATTCGTGCGTC 60.247 55.000 0.00 0.00 39.49 5.19
941 1148 1.299089 GCGTCCACAGTTGCCAAAC 60.299 57.895 0.00 0.00 36.47 2.93
1055 1292 2.578495 GCAAGATCAAGAAGCGTTGTG 58.422 47.619 0.00 0.00 0.00 3.33
1339 1792 4.760047 GGTCCATGCTCGCCGTGT 62.760 66.667 0.00 0.00 0.00 4.49
1340 1793 3.490759 GTCCATGCTCGCCGTGTG 61.491 66.667 0.00 0.00 0.00 3.82
1341 1794 4.758251 TCCATGCTCGCCGTGTGG 62.758 66.667 0.00 0.00 38.77 4.17
1351 1804 4.742201 CCGTGTGGGCGGTCTCTG 62.742 72.222 0.00 0.00 46.11 3.35
1352 1805 3.991051 CGTGTGGGCGGTCTCTGT 61.991 66.667 0.00 0.00 0.00 3.41
1353 1806 2.357517 GTGTGGGCGGTCTCTGTG 60.358 66.667 0.00 0.00 0.00 3.66
1354 1807 4.314440 TGTGGGCGGTCTCTGTGC 62.314 66.667 0.00 0.00 0.00 4.57
1355 1808 4.008933 GTGGGCGGTCTCTGTGCT 62.009 66.667 0.00 0.00 0.00 4.40
1356 1809 3.241530 TGGGCGGTCTCTGTGCTT 61.242 61.111 0.00 0.00 0.00 3.91
1357 1810 2.032681 GGGCGGTCTCTGTGCTTT 59.967 61.111 0.00 0.00 0.00 3.51
1358 1811 1.600916 GGGCGGTCTCTGTGCTTTT 60.601 57.895 0.00 0.00 0.00 2.27
1359 1812 1.578206 GGGCGGTCTCTGTGCTTTTC 61.578 60.000 0.00 0.00 0.00 2.29
1360 1813 1.578206 GGCGGTCTCTGTGCTTTTCC 61.578 60.000 0.00 0.00 0.00 3.13
1361 1814 0.603975 GCGGTCTCTGTGCTTTTCCT 60.604 55.000 0.00 0.00 0.00 3.36
1362 1815 1.433534 CGGTCTCTGTGCTTTTCCTC 58.566 55.000 0.00 0.00 0.00 3.71
1363 1816 1.433534 GGTCTCTGTGCTTTTCCTCG 58.566 55.000 0.00 0.00 0.00 4.63
1364 1817 0.793250 GTCTCTGTGCTTTTCCTCGC 59.207 55.000 0.00 0.00 0.00 5.03
1365 1818 0.681733 TCTCTGTGCTTTTCCTCGCT 59.318 50.000 0.00 0.00 0.00 4.93
1366 1819 1.893137 TCTCTGTGCTTTTCCTCGCTA 59.107 47.619 0.00 0.00 0.00 4.26
1367 1820 1.996191 CTCTGTGCTTTTCCTCGCTAC 59.004 52.381 0.00 0.00 0.00 3.58
1368 1821 1.079503 CTGTGCTTTTCCTCGCTACC 58.920 55.000 0.00 0.00 0.00 3.18
1369 1822 0.685097 TGTGCTTTTCCTCGCTACCT 59.315 50.000 0.00 0.00 0.00 3.08
1370 1823 1.079503 GTGCTTTTCCTCGCTACCTG 58.920 55.000 0.00 0.00 0.00 4.00
1371 1824 0.673644 TGCTTTTCCTCGCTACCTGC 60.674 55.000 0.00 0.00 38.57 4.85
1372 1825 0.391793 GCTTTTCCTCGCTACCTGCT 60.392 55.000 0.00 0.00 40.11 4.24
1373 1826 1.946283 GCTTTTCCTCGCTACCTGCTT 60.946 52.381 0.00 0.00 40.11 3.91
1374 1827 2.003301 CTTTTCCTCGCTACCTGCTTC 58.997 52.381 0.00 0.00 40.11 3.86
1375 1828 0.108804 TTTCCTCGCTACCTGCTTCG 60.109 55.000 0.00 0.00 40.11 3.79
1376 1829 2.558554 TTCCTCGCTACCTGCTTCGC 62.559 60.000 0.00 0.00 40.11 4.70
1377 1830 2.951745 CTCGCTACCTGCTTCGCG 60.952 66.667 0.00 0.00 46.28 5.87
1378 1831 3.685214 CTCGCTACCTGCTTCGCGT 62.685 63.158 5.77 0.00 45.25 6.01
1379 1832 3.545481 CGCTACCTGCTTCGCGTG 61.545 66.667 5.77 1.17 40.64 5.34
1380 1833 3.188786 GCTACCTGCTTCGCGTGG 61.189 66.667 5.77 4.70 38.95 4.94
1381 1834 2.509336 CTACCTGCTTCGCGTGGG 60.509 66.667 5.77 5.06 0.00 4.61
1382 1835 4.752879 TACCTGCTTCGCGTGGGC 62.753 66.667 5.77 9.83 0.00 5.36
1416 1869 4.021631 CGTAGCCCGCGCGATCTA 62.022 66.667 34.63 26.42 41.18 1.98
1417 1870 2.126812 GTAGCCCGCGCGATCTAG 60.127 66.667 34.63 14.36 41.18 2.43
1418 1871 4.039357 TAGCCCGCGCGATCTAGC 62.039 66.667 34.63 23.83 41.18 3.42
1427 1880 3.940723 GCGATCTAGCGTTAGTGGT 57.059 52.632 6.18 0.00 0.00 4.16
1428 1881 1.756367 GCGATCTAGCGTTAGTGGTC 58.244 55.000 6.18 3.29 0.00 4.02
1429 1882 1.065102 GCGATCTAGCGTTAGTGGTCA 59.935 52.381 6.18 0.00 0.00 4.02
1430 1883 2.717530 CGATCTAGCGTTAGTGGTCAC 58.282 52.381 6.18 0.00 0.00 3.67
1431 1884 2.717530 GATCTAGCGTTAGTGGTCACG 58.282 52.381 6.18 0.00 39.49 4.35
1432 1885 1.812235 TCTAGCGTTAGTGGTCACGA 58.188 50.000 6.18 0.00 38.76 4.35
1433 1886 1.466167 TCTAGCGTTAGTGGTCACGAC 59.534 52.381 6.18 0.00 38.76 4.34
1449 1902 2.968206 ACCTACTGGTTCGTCGCC 59.032 61.111 0.00 0.00 46.05 5.54
1450 1903 2.202570 CCTACTGGTTCGTCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
1451 1904 2.564975 CTACTGGTTCGTCGCCGT 59.435 61.111 0.00 0.00 35.01 5.68
1452 1905 1.800315 CTACTGGTTCGTCGCCGTG 60.800 63.158 0.00 0.00 35.01 4.94
1453 1906 3.902162 TACTGGTTCGTCGCCGTGC 62.902 63.158 0.00 0.00 35.01 5.34
1456 1909 4.719369 GGTTCGTCGCCGTGCTCT 62.719 66.667 0.00 0.00 35.01 4.09
1457 1910 3.470567 GTTCGTCGCCGTGCTCTG 61.471 66.667 0.00 0.00 35.01 3.35
1465 1918 3.420606 CCGTGCTCTGCTGCTGTG 61.421 66.667 0.00 2.51 0.00 3.66
1466 1919 2.664185 CGTGCTCTGCTGCTGTGT 60.664 61.111 0.00 0.00 0.00 3.72
1467 1920 2.665395 CGTGCTCTGCTGCTGTGTC 61.665 63.158 0.00 0.00 0.00 3.67
1468 1921 1.301558 GTGCTCTGCTGCTGTGTCT 60.302 57.895 0.00 0.00 0.00 3.41
1469 1922 1.301479 TGCTCTGCTGCTGTGTCTG 60.301 57.895 0.00 0.00 0.00 3.51
1470 1923 2.033755 GCTCTGCTGCTGTGTCTGG 61.034 63.158 0.00 0.00 0.00 3.86
1471 1924 1.670015 CTCTGCTGCTGTGTCTGGA 59.330 57.895 0.00 0.00 0.00 3.86
1472 1925 0.034476 CTCTGCTGCTGTGTCTGGAA 59.966 55.000 0.00 0.00 0.00 3.53
1473 1926 0.034476 TCTGCTGCTGTGTCTGGAAG 59.966 55.000 0.00 0.00 0.00 3.46
1474 1927 1.575576 CTGCTGCTGTGTCTGGAAGC 61.576 60.000 0.00 0.00 37.46 3.86
1475 1928 1.302351 GCTGCTGTGTCTGGAAGCT 60.302 57.895 0.00 0.00 37.82 3.74
1476 1929 1.297456 GCTGCTGTGTCTGGAAGCTC 61.297 60.000 0.00 0.00 37.82 4.09
1477 1930 0.673022 CTGCTGTGTCTGGAAGCTCC 60.673 60.000 0.00 0.00 37.82 4.70
1478 1931 1.372683 GCTGTGTCTGGAAGCTCCA 59.627 57.895 5.03 5.03 45.98 3.86
1491 1944 4.527583 CTCCAGCTCCTGCGGCTC 62.528 72.222 0.00 0.00 45.42 4.70
1497 1950 4.838486 CTCCTGCGGCTCGACGAC 62.838 72.222 0.00 0.00 35.47 4.34
1695 2148 4.140599 CTCGAGCTCCTGCGGCTT 62.141 66.667 8.47 0.00 45.42 4.35
1824 2277 1.079127 GAACCTGGCGCTGAAGCTA 60.079 57.895 7.64 0.00 39.32 3.32
1826 2279 1.831652 AACCTGGCGCTGAAGCTAGT 61.832 55.000 7.64 0.00 43.08 2.57
1887 2340 3.119708 ACTTCTTCATTTTCAGCCGCATC 60.120 43.478 0.00 0.00 0.00 3.91
1968 2421 2.203126 CAATCCCCGGAGCAGAGC 60.203 66.667 0.73 0.00 0.00 4.09
1974 2427 4.277593 CCGGAGCAGAGCGCCTAG 62.278 72.222 2.29 0.00 46.11 3.02
1975 2428 4.940593 CGGAGCAGAGCGCCTAGC 62.941 72.222 2.29 5.46 46.11 3.42
2128 2654 4.576463 ACACTTTAGCTGTATATTGCCTGC 59.424 41.667 0.00 0.00 0.00 4.85
2216 2748 4.935702 TCTTGCTGTTTCATGGTTTTCTG 58.064 39.130 0.00 0.00 0.00 3.02
2217 2749 4.644234 TCTTGCTGTTTCATGGTTTTCTGA 59.356 37.500 0.00 0.00 0.00 3.27
2233 2765 7.491048 TGGTTTTCTGACTGAATTTTTACTTGC 59.509 33.333 0.00 0.00 34.24 4.01
2234 2766 7.706607 GGTTTTCTGACTGAATTTTTACTTGCT 59.293 33.333 0.00 0.00 34.24 3.91
2260 2792 3.821033 GGCATTGGTATTACCTCATGGTC 59.179 47.826 19.25 9.39 44.78 4.02
2261 2793 3.498397 GCATTGGTATTACCTCATGGTCG 59.502 47.826 19.25 3.64 44.78 4.79
2275 2807 2.022764 TGGTCGACATTAGCACATGG 57.977 50.000 18.91 0.00 0.00 3.66
2280 2812 1.935873 CGACATTAGCACATGGACCTG 59.064 52.381 0.00 0.00 0.00 4.00
2296 2828 0.252479 CCTGGCATCAGAGCAACTCT 59.748 55.000 0.00 0.00 43.49 3.24
2299 2831 2.935201 CTGGCATCAGAGCAACTCTAAC 59.065 50.000 0.00 0.00 43.49 2.34
2301 2833 1.929836 GCATCAGAGCAACTCTAACGG 59.070 52.381 0.00 0.00 38.99 4.44
2320 2852 2.433664 GCGACCCATTTCGTCCGT 60.434 61.111 0.00 0.00 41.26 4.69
2340 2872 0.960364 CCATGTCCGTTTGGGTCTGG 60.960 60.000 0.00 0.00 37.00 3.86
2351 2883 1.971695 GGGTCTGGGCGGACAAAAG 60.972 63.158 10.50 0.00 37.91 2.27
2363 2896 2.255252 CAAAAGCGACGGCCCAAG 59.745 61.111 0.00 0.00 41.24 3.61
2416 2950 4.708386 TCCGCGCGGACCCATTTT 62.708 61.111 45.37 0.00 39.76 1.82
2419 2953 3.122323 GCGCGGACCCATTTTCGA 61.122 61.111 8.83 0.00 0.00 3.71
2429 2963 4.221041 GGACCCATTTTCGACCCAAATTTA 59.779 41.667 0.00 0.00 0.00 1.40
2430 2964 5.400066 ACCCATTTTCGACCCAAATTTAG 57.600 39.130 0.00 0.00 0.00 1.85
2509 3043 2.974698 GTGTCTGCTGCACGCCTT 60.975 61.111 0.00 0.00 38.05 4.35
2512 3046 2.203195 TCTGCTGCACGCCTTGTT 60.203 55.556 0.00 0.00 38.05 2.83
2616 3152 2.537560 GCGCCATCGTCAATCCCTG 61.538 63.158 0.00 0.00 38.14 4.45
2825 3397 1.733041 CGTGTTGCTCGTCGGATGT 60.733 57.895 0.00 0.00 0.00 3.06
2906 3498 1.410517 AGCTGTCGCTAGTATGTGCAT 59.589 47.619 0.00 0.00 46.79 3.96
2967 3571 1.048601 GCTACTATGCTAGCCACCCA 58.951 55.000 13.29 0.00 34.16 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.788960 GCAAACAAACCCATAATTTTTAAACAA 57.211 25.926 0.00 0.00 0.00 2.83
1 2 8.122952 CGCAAACAAACCCATAATTTTTAAACA 58.877 29.630 0.00 0.00 0.00 2.83
2 3 7.588123 CCGCAAACAAACCCATAATTTTTAAAC 59.412 33.333 0.00 0.00 0.00 2.01
3 4 7.282450 ACCGCAAACAAACCCATAATTTTTAAA 59.718 29.630 0.00 0.00 0.00 1.52
4 5 6.766467 ACCGCAAACAAACCCATAATTTTTAA 59.234 30.769 0.00 0.00 0.00 1.52
5 6 6.289064 ACCGCAAACAAACCCATAATTTTTA 58.711 32.000 0.00 0.00 0.00 1.52
6 7 5.126779 ACCGCAAACAAACCCATAATTTTT 58.873 33.333 0.00 0.00 0.00 1.94
7 8 4.709250 ACCGCAAACAAACCCATAATTTT 58.291 34.783 0.00 0.00 0.00 1.82
8 9 4.344359 ACCGCAAACAAACCCATAATTT 57.656 36.364 0.00 0.00 0.00 1.82
9 10 4.344359 AACCGCAAACAAACCCATAATT 57.656 36.364 0.00 0.00 0.00 1.40
10 11 4.039852 AGAAACCGCAAACAAACCCATAAT 59.960 37.500 0.00 0.00 0.00 1.28
11 12 3.385111 AGAAACCGCAAACAAACCCATAA 59.615 39.130 0.00 0.00 0.00 1.90
12 13 2.959707 AGAAACCGCAAACAAACCCATA 59.040 40.909 0.00 0.00 0.00 2.74
13 14 1.760029 AGAAACCGCAAACAAACCCAT 59.240 42.857 0.00 0.00 0.00 4.00
14 15 1.187087 AGAAACCGCAAACAAACCCA 58.813 45.000 0.00 0.00 0.00 4.51
15 16 2.359848 ACTAGAAACCGCAAACAAACCC 59.640 45.455 0.00 0.00 0.00 4.11
16 17 3.314357 AGACTAGAAACCGCAAACAAACC 59.686 43.478 0.00 0.00 0.00 3.27
17 18 4.279659 CAGACTAGAAACCGCAAACAAAC 58.720 43.478 0.00 0.00 0.00 2.93
18 19 3.242936 GCAGACTAGAAACCGCAAACAAA 60.243 43.478 0.00 0.00 0.00 2.83
19 20 2.289547 GCAGACTAGAAACCGCAAACAA 59.710 45.455 0.00 0.00 0.00 2.83
20 21 1.871039 GCAGACTAGAAACCGCAAACA 59.129 47.619 0.00 0.00 0.00 2.83
21 22 1.197036 GGCAGACTAGAAACCGCAAAC 59.803 52.381 0.00 0.00 0.00 2.93
22 23 1.202710 TGGCAGACTAGAAACCGCAAA 60.203 47.619 0.00 0.00 0.00 3.68
23 24 0.394938 TGGCAGACTAGAAACCGCAA 59.605 50.000 0.00 0.00 0.00 4.85
24 25 0.320421 GTGGCAGACTAGAAACCGCA 60.320 55.000 0.00 0.00 0.00 5.69
25 26 1.019805 GGTGGCAGACTAGAAACCGC 61.020 60.000 0.00 0.00 0.00 5.68
26 27 0.736325 CGGTGGCAGACTAGAAACCG 60.736 60.000 0.00 2.70 43.83 4.44
27 28 1.019805 GCGGTGGCAGACTAGAAACC 61.020 60.000 0.00 0.00 39.62 3.27
28 29 0.320421 TGCGGTGGCAGACTAGAAAC 60.320 55.000 0.00 0.00 46.21 2.78
29 30 2.054458 TGCGGTGGCAGACTAGAAA 58.946 52.632 0.00 0.00 46.21 2.52
30 31 3.785982 TGCGGTGGCAGACTAGAA 58.214 55.556 0.00 0.00 46.21 2.10
39 40 1.737735 GGCTGAAAATTGCGGTGGC 60.738 57.895 0.00 0.00 40.52 5.01
40 41 1.079888 GGGCTGAAAATTGCGGTGG 60.080 57.895 0.00 0.00 0.00 4.61
41 42 1.444212 CGGGCTGAAAATTGCGGTG 60.444 57.895 0.00 0.00 0.00 4.94
42 43 0.606944 TACGGGCTGAAAATTGCGGT 60.607 50.000 0.00 0.00 0.00 5.68
43 44 0.738389 ATACGGGCTGAAAATTGCGG 59.262 50.000 0.00 0.00 0.00 5.69
44 45 3.617669 CTTATACGGGCTGAAAATTGCG 58.382 45.455 0.00 0.00 0.00 4.85
45 46 3.372060 GCTTATACGGGCTGAAAATTGC 58.628 45.455 0.00 0.00 0.00 3.56
46 47 3.064820 ACGCTTATACGGGCTGAAAATTG 59.935 43.478 0.00 0.00 37.37 2.32
47 48 3.275999 ACGCTTATACGGGCTGAAAATT 58.724 40.909 0.00 0.00 37.37 1.82
48 49 2.870411 GACGCTTATACGGGCTGAAAAT 59.130 45.455 0.00 0.00 37.37 1.82
49 50 2.273557 GACGCTTATACGGGCTGAAAA 58.726 47.619 0.00 0.00 37.37 2.29
50 51 1.472026 GGACGCTTATACGGGCTGAAA 60.472 52.381 0.00 0.00 37.37 2.69
51 52 0.103572 GGACGCTTATACGGGCTGAA 59.896 55.000 0.00 0.00 37.37 3.02
52 53 1.737816 GGACGCTTATACGGGCTGA 59.262 57.895 0.00 0.00 37.37 4.26
53 54 1.300697 GGGACGCTTATACGGGCTG 60.301 63.158 0.00 0.00 37.37 4.85
54 55 2.505167 GGGGACGCTTATACGGGCT 61.505 63.158 0.00 0.00 37.37 5.19
55 56 2.030113 GGGGACGCTTATACGGGC 59.970 66.667 0.00 0.00 37.37 6.13
67 68 2.438951 TTTGCAGGTCGTACGGGGAC 62.439 60.000 16.52 6.21 0.00 4.46
68 69 2.208619 TTTGCAGGTCGTACGGGGA 61.209 57.895 16.52 1.34 0.00 4.81
69 70 2.030958 GTTTGCAGGTCGTACGGGG 61.031 63.158 16.52 3.82 0.00 5.73
70 71 1.301087 TGTTTGCAGGTCGTACGGG 60.301 57.895 16.52 4.19 0.00 5.28
71 72 0.876777 TGTGTTTGCAGGTCGTACGG 60.877 55.000 16.52 0.00 0.00 4.02
72 73 0.506932 CTGTGTTTGCAGGTCGTACG 59.493 55.000 9.53 9.53 33.11 3.67
73 74 1.578583 ACTGTGTTTGCAGGTCGTAC 58.421 50.000 0.00 0.00 40.59 3.67
74 75 2.319136 AACTGTGTTTGCAGGTCGTA 57.681 45.000 0.00 0.00 40.59 3.43
75 76 1.459450 AAACTGTGTTTGCAGGTCGT 58.541 45.000 0.00 0.00 40.59 4.34
76 77 2.353269 TGTAAACTGTGTTTGCAGGTCG 59.647 45.455 9.25 0.00 40.59 4.79
77 78 3.952535 CTGTAAACTGTGTTTGCAGGTC 58.047 45.455 23.69 4.51 40.59 3.85
80 81 3.546020 CGACCTGTAAACTGTGTTTGCAG 60.546 47.826 24.14 24.14 40.33 4.41
81 82 2.353269 CGACCTGTAAACTGTGTTTGCA 59.647 45.455 11.96 11.96 0.00 4.08
82 83 2.286772 CCGACCTGTAAACTGTGTTTGC 60.287 50.000 6.01 5.33 0.00 3.68
83 84 2.286772 GCCGACCTGTAAACTGTGTTTG 60.287 50.000 6.01 0.00 0.00 2.93
84 85 1.944709 GCCGACCTGTAAACTGTGTTT 59.055 47.619 1.33 1.33 0.00 2.83
85 86 1.134340 TGCCGACCTGTAAACTGTGTT 60.134 47.619 0.00 0.00 0.00 3.32
86 87 0.466543 TGCCGACCTGTAAACTGTGT 59.533 50.000 0.00 0.00 0.00 3.72
87 88 1.588674 TTGCCGACCTGTAAACTGTG 58.411 50.000 0.00 0.00 0.00 3.66
88 89 2.335316 TTTGCCGACCTGTAAACTGT 57.665 45.000 0.00 0.00 0.00 3.55
89 90 3.564511 CATTTTGCCGACCTGTAAACTG 58.435 45.455 0.00 0.00 0.00 3.16
90 91 2.030274 GCATTTTGCCGACCTGTAAACT 60.030 45.455 0.00 0.00 37.42 2.66
91 92 2.324860 GCATTTTGCCGACCTGTAAAC 58.675 47.619 0.00 0.00 37.42 2.01
92 93 1.068885 CGCATTTTGCCGACCTGTAAA 60.069 47.619 0.00 0.00 41.12 2.01
93 94 0.519519 CGCATTTTGCCGACCTGTAA 59.480 50.000 0.00 0.00 41.12 2.41
94 95 1.302383 CCGCATTTTGCCGACCTGTA 61.302 55.000 0.00 0.00 41.12 2.74
95 96 2.625823 CCGCATTTTGCCGACCTGT 61.626 57.895 0.00 0.00 41.12 4.00
96 97 2.179018 CCGCATTTTGCCGACCTG 59.821 61.111 0.00 0.00 41.12 4.00
97 98 2.033448 TCCGCATTTTGCCGACCT 59.967 55.556 0.00 0.00 41.12 3.85
98 99 2.253414 GACTCCGCATTTTGCCGACC 62.253 60.000 0.00 0.00 41.12 4.79
99 100 1.134694 GACTCCGCATTTTGCCGAC 59.865 57.895 0.00 0.00 41.12 4.79
100 101 1.003839 AGACTCCGCATTTTGCCGA 60.004 52.632 0.00 0.00 41.12 5.54
101 102 1.135315 CAGACTCCGCATTTTGCCG 59.865 57.895 0.00 0.00 41.12 5.69
102 103 1.153958 GCAGACTCCGCATTTTGCC 60.154 57.895 0.00 0.00 41.12 4.52
103 104 1.063174 CTAGCAGACTCCGCATTTTGC 59.937 52.381 0.00 0.00 40.69 3.68
104 105 2.606725 CTCTAGCAGACTCCGCATTTTG 59.393 50.000 0.00 0.00 0.00 2.44
105 106 2.234908 ACTCTAGCAGACTCCGCATTTT 59.765 45.455 0.00 0.00 0.00 1.82
106 107 1.827969 ACTCTAGCAGACTCCGCATTT 59.172 47.619 0.00 0.00 0.00 2.32
107 108 1.479709 ACTCTAGCAGACTCCGCATT 58.520 50.000 0.00 0.00 0.00 3.56
108 109 1.135915 CAACTCTAGCAGACTCCGCAT 59.864 52.381 0.00 0.00 0.00 4.73
109 110 0.528017 CAACTCTAGCAGACTCCGCA 59.472 55.000 0.00 0.00 0.00 5.69
110 111 0.804156 GCAACTCTAGCAGACTCCGC 60.804 60.000 0.00 0.00 0.00 5.54
111 112 0.814457 AGCAACTCTAGCAGACTCCG 59.186 55.000 0.00 0.00 0.00 4.63
112 113 3.326836 AAAGCAACTCTAGCAGACTCC 57.673 47.619 0.00 0.00 0.00 3.85
113 114 5.164041 CGTTAAAAGCAACTCTAGCAGACTC 60.164 44.000 0.00 0.00 0.00 3.36
114 115 4.686554 CGTTAAAAGCAACTCTAGCAGACT 59.313 41.667 0.00 0.00 0.00 3.24
115 116 4.143094 CCGTTAAAAGCAACTCTAGCAGAC 60.143 45.833 0.00 0.00 0.00 3.51
116 117 3.994392 CCGTTAAAAGCAACTCTAGCAGA 59.006 43.478 0.00 0.00 0.00 4.26
117 118 3.994392 TCCGTTAAAAGCAACTCTAGCAG 59.006 43.478 0.00 0.00 0.00 4.24
118 119 3.744426 GTCCGTTAAAAGCAACTCTAGCA 59.256 43.478 0.00 0.00 0.00 3.49
119 120 3.744426 TGTCCGTTAAAAGCAACTCTAGC 59.256 43.478 0.00 0.00 0.00 3.42
120 121 5.118817 GTCTGTCCGTTAAAAGCAACTCTAG 59.881 44.000 0.00 0.00 0.00 2.43
121 122 4.986659 GTCTGTCCGTTAAAAGCAACTCTA 59.013 41.667 0.00 0.00 0.00 2.43
122 123 3.808174 GTCTGTCCGTTAAAAGCAACTCT 59.192 43.478 0.00 0.00 0.00 3.24
123 124 3.059120 GGTCTGTCCGTTAAAAGCAACTC 60.059 47.826 0.00 0.00 0.00 3.01
124 125 2.876550 GGTCTGTCCGTTAAAAGCAACT 59.123 45.455 0.00 0.00 0.00 3.16
125 126 2.614983 TGGTCTGTCCGTTAAAAGCAAC 59.385 45.455 0.00 0.00 39.52 4.17
126 127 2.920524 TGGTCTGTCCGTTAAAAGCAA 58.079 42.857 0.00 0.00 39.52 3.91
127 128 2.623878 TGGTCTGTCCGTTAAAAGCA 57.376 45.000 0.00 0.00 39.52 3.91
128 129 3.304458 CCTTTGGTCTGTCCGTTAAAAGC 60.304 47.826 0.00 0.00 39.52 3.51
129 130 3.304458 GCCTTTGGTCTGTCCGTTAAAAG 60.304 47.826 0.00 0.00 39.52 2.27
130 131 2.619646 GCCTTTGGTCTGTCCGTTAAAA 59.380 45.455 0.00 0.00 39.52 1.52
131 132 2.223745 GCCTTTGGTCTGTCCGTTAAA 58.776 47.619 0.00 0.00 39.52 1.52
136 137 2.359975 GGGCCTTTGGTCTGTCCG 60.360 66.667 0.84 0.00 39.52 4.79
139 140 1.063266 TCTTTTGGGCCTTTGGTCTGT 60.063 47.619 4.53 0.00 0.00 3.41
158 159 9.495754 GCAAGAAAAATGACTACATTACATCTC 57.504 33.333 0.00 0.00 44.67 2.75
161 162 8.575589 TGTGCAAGAAAAATGACTACATTACAT 58.424 29.630 0.00 0.00 44.67 2.29
235 237 6.612247 TTGACGTGCTTCATTCTTTTAGAA 57.388 33.333 0.00 0.00 38.78 2.10
243 245 6.398935 GCTTTGTTTATTGACGTGCTTCATTC 60.399 38.462 0.00 0.00 0.00 2.67
254 256 6.024552 TCATCCCTTGCTTTGTTTATTGAC 57.975 37.500 0.00 0.00 0.00 3.18
257 259 6.213195 TGGATTCATCCCTTGCTTTGTTTATT 59.787 34.615 3.26 0.00 46.59 1.40
367 476 7.706281 TTTTTGATTTACGCAACATTGATGT 57.294 28.000 0.00 0.00 44.20 3.06
405 523 9.238368 TCCATTCGGTTTATTCAGTTTCTAATT 57.762 29.630 0.00 0.00 0.00 1.40
416 534 3.685756 TCCGTTGTCCATTCGGTTTATTC 59.314 43.478 0.00 0.00 43.94 1.75
425 543 3.040147 TCTGACTTCCGTTGTCCATTC 57.960 47.619 0.00 0.00 33.83 2.67
430 548 3.454375 TCAACTTCTGACTTCCGTTGTC 58.546 45.455 0.00 0.00 37.02 3.18
461 579 2.224917 TGCGGTTATCCTTTTCTTGGGT 60.225 45.455 0.00 0.00 0.00 4.51
464 582 3.343617 TCCTGCGGTTATCCTTTTCTTG 58.656 45.455 0.00 0.00 0.00 3.02
531 649 2.237393 AGAAGCTCGATGGAAGCATC 57.763 50.000 0.00 0.00 0.00 3.91
532 650 3.661944 CATAGAAGCTCGATGGAAGCAT 58.338 45.455 0.00 0.00 0.00 3.79
542 660 4.109050 GTGACTCTTTCCATAGAAGCTCG 58.891 47.826 0.00 0.00 32.35 5.03
550 668 5.491070 CATCCAAGTGTGACTCTTTCCATA 58.509 41.667 0.00 0.00 0.00 2.74
551 669 4.330250 CATCCAAGTGTGACTCTTTCCAT 58.670 43.478 0.00 0.00 0.00 3.41
552 670 3.743521 CATCCAAGTGTGACTCTTTCCA 58.256 45.455 0.00 0.00 0.00 3.53
553 671 2.485814 GCATCCAAGTGTGACTCTTTCC 59.514 50.000 0.00 0.00 0.00 3.13
588 708 1.594397 CGGATGATCACGAACATGTGG 59.406 52.381 0.00 0.00 40.31 4.17
590 710 1.290203 GCGGATGATCACGAACATGT 58.710 50.000 9.68 0.00 0.00 3.21
671 840 8.959058 GTCGTCAGACACACTCATATATAAAAG 58.041 37.037 0.41 0.00 46.32 2.27
689 868 6.323266 GCTTGATTAAGTCTTAGTCGTCAGA 58.677 40.000 9.75 0.00 36.27 3.27
690 869 5.517054 GGCTTGATTAAGTCTTAGTCGTCAG 59.483 44.000 9.75 7.25 35.64 3.51
692 871 5.652518 AGGCTTGATTAAGTCTTAGTCGTC 58.347 41.667 0.00 0.30 46.34 4.20
693 872 5.662674 AGGCTTGATTAAGTCTTAGTCGT 57.337 39.130 0.00 0.00 46.34 4.34
765 952 8.471361 TCAGTCGATGCAATATTCTTATGATC 57.529 34.615 0.00 0.00 0.00 2.92
768 955 7.598118 AGTCTCAGTCGATGCAATATTCTTATG 59.402 37.037 0.00 0.00 0.00 1.90
769 956 7.665690 AGTCTCAGTCGATGCAATATTCTTAT 58.334 34.615 0.00 0.00 0.00 1.73
770 957 7.043961 AGTCTCAGTCGATGCAATATTCTTA 57.956 36.000 0.00 0.00 0.00 2.10
772 959 5.528043 AGTCTCAGTCGATGCAATATTCT 57.472 39.130 0.00 0.00 0.00 2.40
775 962 4.141846 ACCAAGTCTCAGTCGATGCAATAT 60.142 41.667 0.00 0.00 0.00 1.28
779 966 0.969149 ACCAAGTCTCAGTCGATGCA 59.031 50.000 0.00 0.00 0.00 3.96
802 989 7.703197 GGCTACTAAATCTAAGTCAAGTGAGAC 59.297 40.741 0.00 0.00 38.81 3.36
808 995 5.163437 ACGGGGCTACTAAATCTAAGTCAAG 60.163 44.000 0.00 0.00 0.00 3.02
810 997 4.284178 ACGGGGCTACTAAATCTAAGTCA 58.716 43.478 0.00 0.00 0.00 3.41
848 1035 7.556844 ACGGAGAGAATTCTTTAGCAATCTAA 58.443 34.615 9.87 0.00 32.53 2.10
849 1036 7.113658 ACGGAGAGAATTCTTTAGCAATCTA 57.886 36.000 9.87 0.00 32.53 1.98
850 1037 5.983540 ACGGAGAGAATTCTTTAGCAATCT 58.016 37.500 9.87 0.00 32.53 2.40
851 1038 7.772332 TTACGGAGAGAATTCTTTAGCAATC 57.228 36.000 9.87 0.00 32.53 2.67
854 1041 5.581085 GCTTTACGGAGAGAATTCTTTAGCA 59.419 40.000 9.87 0.00 32.53 3.49
855 1042 5.581085 TGCTTTACGGAGAGAATTCTTTAGC 59.419 40.000 9.87 9.04 32.53 3.09
856 1043 7.778470 ATGCTTTACGGAGAGAATTCTTTAG 57.222 36.000 9.87 4.57 32.53 1.85
859 1046 9.482627 CTTATATGCTTTACGGAGAGAATTCTT 57.517 33.333 9.87 0.00 32.53 2.52
861 1048 9.134734 CTCTTATATGCTTTACGGAGAGAATTC 57.865 37.037 0.00 0.00 33.07 2.17
862 1049 7.600752 GCTCTTATATGCTTTACGGAGAGAATT 59.399 37.037 0.00 0.00 33.07 2.17
863 1050 7.039363 AGCTCTTATATGCTTTACGGAGAGAAT 60.039 37.037 0.00 0.00 35.86 2.40
864 1051 6.265649 AGCTCTTATATGCTTTACGGAGAGAA 59.734 38.462 0.00 0.00 35.86 2.87
866 1053 6.019779 AGCTCTTATATGCTTTACGGAGAG 57.980 41.667 0.00 0.00 35.86 3.20
868 1055 7.145985 TGTAAGCTCTTATATGCTTTACGGAG 58.854 38.462 11.56 0.00 45.91 4.63
870 1057 6.924060 ACTGTAAGCTCTTATATGCTTTACGG 59.076 38.462 11.56 13.01 45.91 4.02
871 1058 7.648112 TCACTGTAAGCTCTTATATGCTTTACG 59.352 37.037 11.56 0.00 45.91 3.18
872 1059 8.873215 TCACTGTAAGCTCTTATATGCTTTAC 57.127 34.615 11.56 9.15 45.91 2.01
873 1060 9.698309 GATCACTGTAAGCTCTTATATGCTTTA 57.302 33.333 11.56 4.11 45.91 1.85
877 1064 9.698309 TTTAGATCACTGTAAGCTCTTATATGC 57.302 33.333 0.00 0.00 37.60 3.14
879 1066 9.900710 CGTTTAGATCACTGTAAGCTCTTATAT 57.099 33.333 0.00 0.00 37.60 0.86
888 1075 5.000012 AGGAGCGTTTAGATCACTGTAAG 58.000 43.478 0.00 0.00 36.90 2.34
892 1099 3.181516 GCAAAGGAGCGTTTAGATCACTG 60.182 47.826 0.00 0.00 36.90 3.66
909 1116 0.247145 GGACGCACGAATACGCAAAG 60.247 55.000 0.00 0.00 43.96 2.77
913 1120 2.009625 CTGTGGACGCACGAATACGC 62.010 60.000 0.00 0.00 43.96 4.42
914 1121 0.731514 ACTGTGGACGCACGAATACG 60.732 55.000 0.00 0.00 45.75 3.06
915 1122 1.126113 CAACTGTGGACGCACGAATAC 59.874 52.381 0.00 0.00 0.00 1.89
916 1123 1.424403 CAACTGTGGACGCACGAATA 58.576 50.000 0.00 0.00 0.00 1.75
917 1124 1.841663 GCAACTGTGGACGCACGAAT 61.842 55.000 0.00 0.00 0.00 3.34
919 1126 2.964925 GCAACTGTGGACGCACGA 60.965 61.111 0.00 0.00 0.00 4.35
921 1128 1.999071 TTTGGCAACTGTGGACGCAC 61.999 55.000 0.00 0.00 37.61 5.34
922 1129 1.750780 TTTGGCAACTGTGGACGCA 60.751 52.632 0.00 0.00 37.61 5.24
923 1130 1.299089 GTTTGGCAACTGTGGACGC 60.299 57.895 0.00 0.00 37.61 5.19
924 1131 0.453793 TTGTTTGGCAACTGTGGACG 59.546 50.000 0.00 0.00 33.58 4.79
925 1132 2.663826 TTTGTTTGGCAACTGTGGAC 57.336 45.000 0.00 0.00 36.72 4.02
926 1133 2.093764 CCTTTTGTTTGGCAACTGTGGA 60.094 45.455 0.00 0.00 36.72 4.02
927 1134 2.093764 TCCTTTTGTTTGGCAACTGTGG 60.094 45.455 0.00 0.00 36.72 4.17
941 1148 6.401581 GCTCGACTGTTTCTCTTATCCTTTTG 60.402 42.308 0.00 0.00 0.00 2.44
1256 1499 2.047844 GCAGCTTCCTGACGCAGA 60.048 61.111 8.20 0.00 41.77 4.26
1322 1775 4.760047 ACACGGCGAGCATGGACC 62.760 66.667 16.62 0.00 0.00 4.46
1323 1776 3.490759 CACACGGCGAGCATGGAC 61.491 66.667 16.62 0.00 0.00 4.02
1324 1777 4.758251 CCACACGGCGAGCATGGA 62.758 66.667 16.62 0.00 31.57 3.41
1335 1788 3.991051 ACAGAGACCGCCCACACG 61.991 66.667 0.00 0.00 0.00 4.49
1336 1789 2.357517 CACAGAGACCGCCCACAC 60.358 66.667 0.00 0.00 0.00 3.82
1337 1790 4.314440 GCACAGAGACCGCCCACA 62.314 66.667 0.00 0.00 0.00 4.17
1338 1791 3.537206 AAGCACAGAGACCGCCCAC 62.537 63.158 0.00 0.00 0.00 4.61
1339 1792 2.337879 AAAAGCACAGAGACCGCCCA 62.338 55.000 0.00 0.00 0.00 5.36
1340 1793 1.578206 GAAAAGCACAGAGACCGCCC 61.578 60.000 0.00 0.00 0.00 6.13
1341 1794 1.578206 GGAAAAGCACAGAGACCGCC 61.578 60.000 0.00 0.00 0.00 6.13
1342 1795 0.603975 AGGAAAAGCACAGAGACCGC 60.604 55.000 0.00 0.00 0.00 5.68
1343 1796 1.433534 GAGGAAAAGCACAGAGACCG 58.566 55.000 0.00 0.00 0.00 4.79
1344 1797 1.433534 CGAGGAAAAGCACAGAGACC 58.566 55.000 0.00 0.00 0.00 3.85
1345 1798 0.793250 GCGAGGAAAAGCACAGAGAC 59.207 55.000 0.00 0.00 0.00 3.36
1346 1799 0.681733 AGCGAGGAAAAGCACAGAGA 59.318 50.000 0.00 0.00 35.48 3.10
1347 1800 1.996191 GTAGCGAGGAAAAGCACAGAG 59.004 52.381 0.00 0.00 35.48 3.35
1348 1801 1.337823 GGTAGCGAGGAAAAGCACAGA 60.338 52.381 0.00 0.00 35.48 3.41
1349 1802 1.079503 GGTAGCGAGGAAAAGCACAG 58.920 55.000 0.00 0.00 35.48 3.66
1350 1803 0.685097 AGGTAGCGAGGAAAAGCACA 59.315 50.000 0.00 0.00 35.48 4.57
1351 1804 1.079503 CAGGTAGCGAGGAAAAGCAC 58.920 55.000 0.00 0.00 35.48 4.40
1352 1805 0.673644 GCAGGTAGCGAGGAAAAGCA 60.674 55.000 0.00 0.00 35.48 3.91
1353 1806 2.090693 GCAGGTAGCGAGGAAAAGC 58.909 57.895 0.00 0.00 0.00 3.51
1400 1853 2.126812 CTAGATCGCGCGGGCTAC 60.127 66.667 31.69 16.09 36.88 3.58
1401 1854 4.039357 GCTAGATCGCGCGGGCTA 62.039 66.667 31.69 26.83 36.88 3.93
1409 1862 1.065102 TGACCACTAACGCTAGATCGC 59.935 52.381 0.00 0.00 0.00 4.58
1410 1863 2.717530 GTGACCACTAACGCTAGATCG 58.282 52.381 0.00 0.00 0.00 3.69
1411 1864 2.353889 TCGTGACCACTAACGCTAGATC 59.646 50.000 0.00 0.00 39.61 2.75
1412 1865 2.097142 GTCGTGACCACTAACGCTAGAT 59.903 50.000 0.00 0.00 39.61 1.98
1413 1866 1.466167 GTCGTGACCACTAACGCTAGA 59.534 52.381 0.00 0.00 39.61 2.43
1414 1867 1.892468 GTCGTGACCACTAACGCTAG 58.108 55.000 0.00 0.00 39.61 3.42
1416 1869 4.959446 GTCGTGACCACTAACGCT 57.041 55.556 0.00 0.00 39.61 5.07
1448 1901 3.420606 CACAGCAGCAGAGCACGG 61.421 66.667 0.00 0.00 36.85 4.94
1449 1902 2.664185 ACACAGCAGCAGAGCACG 60.664 61.111 0.00 0.00 36.85 5.34
1450 1903 1.301558 AGACACAGCAGCAGAGCAC 60.302 57.895 0.00 0.00 36.85 4.40
1451 1904 1.301479 CAGACACAGCAGCAGAGCA 60.301 57.895 0.00 0.00 36.85 4.26
1452 1905 2.033755 CCAGACACAGCAGCAGAGC 61.034 63.158 0.00 0.00 0.00 4.09
1453 1906 0.034476 TTCCAGACACAGCAGCAGAG 59.966 55.000 0.00 0.00 0.00 3.35
1454 1907 0.034476 CTTCCAGACACAGCAGCAGA 59.966 55.000 0.00 0.00 0.00 4.26
1455 1908 1.575576 GCTTCCAGACACAGCAGCAG 61.576 60.000 0.00 0.00 33.45 4.24
1456 1909 1.598962 GCTTCCAGACACAGCAGCA 60.599 57.895 0.00 0.00 33.45 4.41
1457 1910 1.297456 GAGCTTCCAGACACAGCAGC 61.297 60.000 0.00 0.00 35.88 5.25
1458 1911 0.673022 GGAGCTTCCAGACACAGCAG 60.673 60.000 0.00 0.00 36.28 4.24
1459 1912 1.372683 GGAGCTTCCAGACACAGCA 59.627 57.895 0.00 0.00 36.28 4.41
1460 1913 1.372683 TGGAGCTTCCAGACACAGC 59.627 57.895 1.25 0.00 42.67 4.40
1772 2225 2.967076 CACTCAGCGCAACCGTGT 60.967 61.111 11.47 0.00 36.67 4.49
1824 2277 1.227853 GGTGAGCCCAAACACGACT 60.228 57.895 0.00 0.00 37.82 4.18
1826 2279 2.280524 CGGTGAGCCCAAACACGA 60.281 61.111 0.00 0.00 37.82 4.35
1861 2314 4.670221 GCGGCTGAAAATGAAGAAGTACAG 60.670 45.833 0.00 0.00 0.00 2.74
1887 2340 4.280494 CGCCCGTACTCCCCATCG 62.280 72.222 0.00 0.00 0.00 3.84
1930 2383 3.435186 GTGCAAAGGCCTCTCCGC 61.435 66.667 5.23 7.26 40.77 5.54
1974 2427 4.629200 GCACTCATTCCACATAGCTATAGC 59.371 45.833 17.33 17.33 42.49 2.97
1975 2428 6.035368 AGCACTCATTCCACATAGCTATAG 57.965 41.667 5.77 3.92 0.00 1.31
1976 2429 5.335976 CGAGCACTCATTCCACATAGCTATA 60.336 44.000 5.77 0.00 0.00 1.31
1977 2430 4.560311 CGAGCACTCATTCCACATAGCTAT 60.560 45.833 0.00 0.00 0.00 2.97
2003 2458 1.539827 GTCCGTCTTGGTCCAAAATGG 59.460 52.381 9.68 9.68 39.52 3.16
2051 2510 9.855361 CTACACGTGTTGTACTATACTGTATAC 57.145 37.037 28.55 0.00 39.91 1.47
2189 2721 6.607735 AAACCATGAAACAGCAAGAAAATG 57.392 33.333 0.00 0.00 0.00 2.32
2199 2731 5.756195 TCAGTCAGAAAACCATGAAACAG 57.244 39.130 0.00 0.00 0.00 3.16
2216 2748 5.324697 CCGCTAGCAAGTAAAAATTCAGTC 58.675 41.667 16.45 0.00 0.00 3.51
2217 2749 4.379499 GCCGCTAGCAAGTAAAAATTCAGT 60.379 41.667 16.45 0.00 42.97 3.41
2233 2765 3.244078 TGAGGTAATACCAATGCCGCTAG 60.244 47.826 12.54 0.00 41.95 3.42
2234 2766 2.701423 TGAGGTAATACCAATGCCGCTA 59.299 45.455 12.54 0.00 41.95 4.26
2260 2792 1.935873 CAGGTCCATGTGCTAATGTCG 59.064 52.381 0.00 0.00 0.00 4.35
2261 2793 2.292267 CCAGGTCCATGTGCTAATGTC 58.708 52.381 0.00 0.00 0.00 3.06
2275 2807 0.035630 AGTTGCTCTGATGCCAGGTC 60.036 55.000 0.00 0.00 40.76 3.85
2280 2812 1.929836 CGTTAGAGTTGCTCTGATGCC 59.070 52.381 8.75 0.00 41.37 4.40
2301 2833 2.822701 GGACGAAATGGGTCGCCC 60.823 66.667 7.87 7.87 45.00 6.13
2320 2852 0.036164 CAGACCCAAACGGACATGGA 59.964 55.000 0.00 0.00 39.12 3.41
2340 2872 4.084888 CCGTCGCTTTTGTCCGCC 62.085 66.667 0.00 0.00 0.00 6.13
2363 2896 5.118510 CACAAAATAAAAATGTGTCTCCGCC 59.881 40.000 0.00 0.00 39.60 6.13
2372 2905 6.536941 ACAAAGCGGACACAAAATAAAAATGT 59.463 30.769 0.00 0.00 0.00 2.71
2416 2950 4.837093 ATCTGTCCTAAATTTGGGTCGA 57.163 40.909 18.99 14.70 0.00 4.20
2430 2964 0.107654 CCTCGGACCCAAATCTGTCC 60.108 60.000 0.00 0.00 46.15 4.02
2465 2999 0.875059 CGAGGAGTTGGCAGAAAACC 59.125 55.000 0.00 0.00 0.00 3.27
2607 3143 1.306141 AGTCTCGCCCAGGGATTGA 60.306 57.895 10.89 2.09 0.00 2.57
2700 3241 0.669318 TCGGAGTTGTTCGATGTGCC 60.669 55.000 0.00 0.00 0.00 5.01
2825 3397 0.527600 CGAGCTAGCATGCGGTTGTA 60.528 55.000 18.83 0.00 38.13 2.41
2906 3498 2.049156 CGACGAGCAGCACCAGAA 60.049 61.111 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.