Multiple sequence alignment - TraesCS3B01G132300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G132300 chr3B 100.000 7069 0 0 1 7069 114734442 114727374 0.000000e+00 13055.0
1 TraesCS3B01G132300 chr3B 91.317 334 27 2 2078 2410 114721572 114721240 8.360000e-124 455.0
2 TraesCS3B01G132300 chr3B 79.825 570 67 19 1345 1902 774717915 774718448 8.660000e-99 372.0
3 TraesCS3B01G132300 chr3B 81.818 198 29 5 1885 2079 114721848 114721655 7.340000e-35 159.0
4 TraesCS3B01G132300 chr3B 90.244 82 6 2 3278 3358 60259751 60259671 9.700000e-19 106.0
5 TraesCS3B01G132300 chr3B 89.873 79 8 0 3280 3358 60259655 60259733 1.250000e-17 102.0
6 TraesCS3B01G132300 chr3A 94.069 3018 133 25 3385 6378 79187287 79190282 0.000000e+00 4540.0
7 TraesCS3B01G132300 chr3A 93.479 2147 93 21 1178 3283 79185138 79187278 0.000000e+00 3145.0
8 TraesCS3B01G132300 chr3A 88.717 647 19 11 560 1166 79184464 79185096 0.000000e+00 741.0
9 TraesCS3B01G132300 chr3A 87.037 324 20 3 2 324 79183844 79184146 5.250000e-91 346.0
10 TraesCS3B01G132300 chr3A 85.577 312 17 8 6465 6754 79190857 79191162 1.150000e-77 302.0
11 TraesCS3B01G132300 chr3A 87.273 220 27 1 6843 7062 79191794 79192012 4.230000e-62 250.0
12 TraesCS3B01G132300 chr3A 91.925 161 9 4 2100 2258 79263457 79263615 9.230000e-54 222.0
13 TraesCS3B01G132300 chr3A 94.215 121 7 0 1982 2102 79263083 79263203 1.210000e-42 185.0
14 TraesCS3B01G132300 chr3A 92.969 128 8 1 2250 2377 79265036 79265162 1.210000e-42 185.0
15 TraesCS3B01G132300 chr3A 94.737 95 3 1 6750 6842 79191423 79191517 5.710000e-31 147.0
16 TraesCS3B01G132300 chr3A 82.781 151 19 1 1023 1173 646279027 646279170 2.070000e-25 128.0
17 TraesCS3B01G132300 chr3A 88.889 90 7 2 6974 7061 79192680 79192768 2.700000e-19 108.0
18 TraesCS3B01G132300 chr3A 85.417 96 5 1 4152 4238 79265160 79265255 2.720000e-14 91.6
19 TraesCS3B01G132300 chr3A 96.296 54 2 0 4977 5030 79239689 79239742 9.770000e-14 89.8
20 TraesCS3B01G132300 chr3A 93.443 61 2 2 3349 3409 550440517 550440459 9.770000e-14 89.8
21 TraesCS3B01G132300 chr3D 93.200 2956 149 28 3407 6332 67653970 67651037 0.000000e+00 4298.0
22 TraesCS3B01G132300 chr3D 93.386 2132 97 24 1178 3281 67656086 67653971 0.000000e+00 3116.0
23 TraesCS3B01G132300 chr3D 86.450 369 25 9 810 1178 67656461 67656118 1.440000e-101 381.0
24 TraesCS3B01G132300 chr3D 78.411 579 69 32 6465 7029 67650909 67650373 6.840000e-85 326.0
25 TraesCS3B01G132300 chr3D 87.059 85 10 1 3274 3357 375212262 375212346 2.100000e-15 95.3
26 TraesCS3B01G132300 chr7D 80.550 2401 339 74 3787 6084 587843253 587845628 0.000000e+00 1729.0
27 TraesCS3B01G132300 chr7D 79.307 1155 161 44 1995 3101 587840415 587841539 0.000000e+00 737.0
28 TraesCS3B01G132300 chr7D 86.136 339 37 8 3451 3786 587842884 587843215 2.420000e-94 357.0
29 TraesCS3B01G132300 chr7D 80.822 219 29 6 1651 1862 587839775 587839987 7.340000e-35 159.0
30 TraesCS3B01G132300 chr7D 87.179 117 14 1 1746 1861 412181359 412181475 1.600000e-26 132.0
31 TraesCS3B01G132300 chr7D 95.082 61 1 2 3357 3417 419411831 419411889 2.100000e-15 95.3
32 TraesCS3B01G132300 chr7D 85.263 95 8 3 3267 3358 621646349 621646440 7.550000e-15 93.5
33 TraesCS3B01G132300 chr7B 80.475 2402 311 89 3787 6084 659405703 659408050 0.000000e+00 1692.0
34 TraesCS3B01G132300 chr7B 82.851 1312 167 43 3778 5059 659640991 659642274 0.000000e+00 1123.0
35 TraesCS3B01G132300 chr7B 79.016 1158 162 54 1995 3101 659639308 659640435 0.000000e+00 717.0
36 TraesCS3B01G132300 chr7B 77.580 1066 160 34 5088 6084 659642348 659643403 7.960000e-159 571.0
37 TraesCS3B01G132300 chr7B 79.554 807 107 33 2338 3105 659404305 659405092 2.260000e-144 523.0
38 TraesCS3B01G132300 chr7B 85.634 355 43 6 3434 3786 659640615 659640963 4.030000e-97 366.0
39 TraesCS3B01G132300 chr7B 76.471 612 101 30 1277 1862 659402855 659403449 6.940000e-75 292.0
40 TraesCS3B01G132300 chr7B 81.522 368 53 10 3414 3768 659405287 659405652 8.970000e-74 289.0
41 TraesCS3B01G132300 chr7B 91.803 122 7 2 1024 1145 659402589 659402707 4.390000e-37 167.0
42 TraesCS3B01G132300 chr7B 90.351 114 11 0 1677 1790 659638700 659638813 4.420000e-32 150.0
43 TraesCS3B01G132300 chr7B 100.000 53 0 0 3357 3409 13866657 13866709 1.620000e-16 99.0
44 TraesCS3B01G132300 chr5B 82.506 1309 167 36 3787 5061 106159106 106157826 0.000000e+00 1092.0
45 TraesCS3B01G132300 chr5B 81.028 1012 121 39 5091 6073 106157764 106156795 0.000000e+00 739.0
46 TraesCS3B01G132300 chr5B 78.017 605 87 28 2523 3101 106160222 106159638 8.780000e-89 339.0
47 TraesCS3B01G132300 chr5B 85.321 327 39 5 3443 3760 106159496 106159170 5.290000e-86 329.0
48 TraesCS3B01G132300 chr5B 82.632 190 24 6 1677 1862 106161829 106161645 7.340000e-35 159.0
49 TraesCS3B01G132300 chr5B 82.632 190 24 6 1677 1862 106168117 106167933 7.340000e-35 159.0
50 TraesCS3B01G132300 chr5B 82.632 190 24 6 1677 1862 106174276 106174092 7.340000e-35 159.0
51 TraesCS3B01G132300 chr7A 78.943 1154 167 48 1995 3101 679802351 679803475 0.000000e+00 715.0
52 TraesCS3B01G132300 chr7A 84.211 741 87 19 4342 5059 679812842 679813575 0.000000e+00 693.0
53 TraesCS3B01G132300 chr7A 81.081 555 86 14 3778 4324 679804038 679804581 6.550000e-115 425.0
54 TraesCS3B01G132300 chr7A 84.048 420 64 2 5088 5504 679813649 679814068 1.100000e-107 401.0
55 TraesCS3B01G132300 chr7A 84.680 359 48 7 3414 3768 679803641 679803996 1.130000e-92 351.0
56 TraesCS3B01G132300 chr7A 94.495 109 6 0 1037 1145 679793801 679793909 1.220000e-37 169.0
57 TraesCS3B01G132300 chr7A 81.279 219 28 6 1651 1862 679801499 679801711 1.580000e-36 165.0
58 TraesCS3B01G132300 chr7A 88.095 84 6 4 3277 3358 678142624 678142705 5.840000e-16 97.1
59 TraesCS3B01G132300 chr1B 81.419 592 60 25 4499 5061 482168211 482167641 8.420000e-119 438.0
60 TraesCS3B01G132300 chr1B 80.702 570 64 22 1345 1902 562725809 562725274 1.100000e-107 401.0
61 TraesCS3B01G132300 chr1B 82.370 346 41 13 5737 6073 482167094 482166760 4.170000e-72 283.0
62 TraesCS3B01G132300 chr1B 88.095 84 5 4 3276 3358 222308873 222308794 2.100000e-15 95.3
63 TraesCS3B01G132300 chr1B 77.483 151 27 7 6913 7058 545076591 545076443 4.540000e-12 84.2
64 TraesCS3B01G132300 chr6B 75.000 468 92 13 6614 7062 198405296 198404835 7.240000e-45 193.0
65 TraesCS3B01G132300 chr6B 87.629 97 11 1 5987 6082 124088071 124087975 2.080000e-20 111.0
66 TraesCS3B01G132300 chr6B 89.855 69 6 1 3341 3409 630922376 630922443 3.510000e-13 87.9
67 TraesCS3B01G132300 chr6B 100.000 42 0 0 3368 3409 504000865 504000824 2.110000e-10 78.7
68 TraesCS3B01G132300 chr6A 78.370 319 54 13 5768 6076 68133434 68133121 7.240000e-45 193.0
69 TraesCS3B01G132300 chr1D 87.582 153 9 4 1758 1902 11420474 11420624 1.220000e-37 169.0
70 TraesCS3B01G132300 chr1D 89.286 84 4 4 3276 3358 158098920 158098999 4.510000e-17 100.0
71 TraesCS3B01G132300 chr5A 78.175 252 41 11 6821 7062 456977896 456977649 1.590000e-31 148.0
72 TraesCS3B01G132300 chr5A 88.235 85 6 4 3276 3358 533944286 533944204 1.620000e-16 99.0
73 TraesCS3B01G132300 chr5A 89.062 64 7 0 6995 7058 400485645 400485708 5.880000e-11 80.5
74 TraesCS3B01G132300 chr5A 85.455 55 4 3 6983 7035 679123955 679124007 4.000000e-03 54.7
75 TraesCS3B01G132300 chr5D 73.176 466 95 19 6615 7061 464284796 464285250 2.660000e-29 141.0
76 TraesCS3B01G132300 chr5D 77.016 248 51 5 6821 7062 354840852 354840605 3.440000e-28 137.0
77 TraesCS3B01G132300 chr5D 91.209 91 5 2 4911 4998 496553326 496553236 3.460000e-23 121.0
78 TraesCS3B01G132300 chr5D 88.462 78 9 0 3279 3356 142904990 142905067 2.100000e-15 95.3
79 TraesCS3B01G132300 chr4B 73.236 411 64 30 6651 7039 60634858 60635244 2.700000e-19 108.0
80 TraesCS3B01G132300 chr4A 91.304 69 5 1 3341 3409 696171173 696171106 7.550000e-15 93.5
81 TraesCS3B01G132300 chr2A 96.429 56 2 0 3363 3418 771185644 771185699 7.550000e-15 93.5
82 TraesCS3B01G132300 chr2A 94.737 38 2 0 7003 7040 758529587 758529624 7.660000e-05 60.2
83 TraesCS3B01G132300 chr2D 88.889 72 7 1 3341 3412 300436371 300436301 3.510000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G132300 chr3B 114727374 114734442 7068 True 13055.000 13055 100.00000 1 7069 1 chr3B.!!$R2 7068
1 TraesCS3B01G132300 chr3B 774717915 774718448 533 False 372.000 372 79.82500 1345 1902 1 chr3B.!!$F2 557
2 TraesCS3B01G132300 chr3B 114721240 114721848 608 True 307.000 455 86.56750 1885 2410 2 chr3B.!!$R3 525
3 TraesCS3B01G132300 chr3A 79183844 79192768 8924 False 1197.375 4540 89.97225 2 7062 8 chr3A.!!$F3 7060
4 TraesCS3B01G132300 chr3D 67650373 67656461 6088 True 2030.250 4298 87.86175 810 7029 4 chr3D.!!$R1 6219
5 TraesCS3B01G132300 chr7D 587839775 587845628 5853 False 745.500 1729 81.70375 1651 6084 4 chr7D.!!$F4 4433
6 TraesCS3B01G132300 chr7B 659402589 659408050 5461 False 592.600 1692 81.96500 1024 6084 5 chr7B.!!$F2 5060
7 TraesCS3B01G132300 chr7B 659638700 659643403 4703 False 585.400 1123 83.08640 1677 6084 5 chr7B.!!$F3 4407
8 TraesCS3B01G132300 chr5B 106156795 106161829 5034 True 531.600 1092 81.90080 1677 6073 5 chr5B.!!$R3 4396
9 TraesCS3B01G132300 chr7A 679812842 679814068 1226 False 547.000 693 84.12950 4342 5504 2 chr7A.!!$F4 1162
10 TraesCS3B01G132300 chr7A 679801499 679804581 3082 False 414.000 715 81.49575 1651 4324 4 chr7A.!!$F3 2673
11 TraesCS3B01G132300 chr1B 562725274 562725809 535 True 401.000 401 80.70200 1345 1902 1 chr1B.!!$R3 557
12 TraesCS3B01G132300 chr1B 482166760 482168211 1451 True 360.500 438 81.89450 4499 6073 2 chr1B.!!$R4 1574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.388649 GTGGCCTCCTATATGCGTCG 60.389 60.0 3.32 0.00 0.00 5.12 F
1264 1445 0.105039 CGCCACCTATCTCTGGGAAC 59.895 60.0 0.00 0.00 0.00 3.62 F
1424 1612 0.391130 TGCGTGTGACTTATGAGGGC 60.391 55.0 0.00 0.00 0.00 5.19 F
1489 1677 0.392998 ATGCACTTGTCCATCGTCCC 60.393 55.0 0.00 0.00 0.00 4.46 F
1942 3007 1.527696 GTGCACATTTTCTGCGATCG 58.472 50.0 13.17 11.69 37.46 3.69 F
3296 4768 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.0 0.00 0.00 0.00 2.44 F
3934 6620 1.573829 GACGCGGGTTGATTGCTGAA 61.574 55.0 12.47 0.00 0.00 3.02 F
5793 8651 0.465097 AAGATTGGCTGGGCGATCTG 60.465 55.0 22.12 0.00 34.23 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1716 0.179045 ACATGAATAGGCCGGCAGAC 60.179 55.000 30.85 11.48 0.00 3.51 R
3212 4682 0.324552 TCAATGGCATGGTCAAGGGG 60.325 55.000 0.00 0.00 0.00 4.79 R
3378 4850 2.811431 TGTCCCAAAATAAGTGTCGCTG 59.189 45.455 0.00 0.00 0.00 5.18 R
3380 4852 3.071479 TCTGTCCCAAAATAAGTGTCGC 58.929 45.455 0.00 0.00 0.00 5.19 R
3919 6605 0.523072 CACCTTCAGCAATCAACCCG 59.477 55.000 0.00 0.00 0.00 5.28 R
4556 7261 1.186200 TCGCAGTTGCTGATACTCCT 58.814 50.000 2.29 0.00 39.32 3.69 R
5916 8786 0.108615 CAAGCGACGGAGAGGAATGT 60.109 55.000 0.00 0.00 0.00 2.71 R
6909 10897 2.032681 GGGCTTGGAGCACTCGTT 59.967 61.111 2.04 0.00 42.59 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.469331 CCCAGTCGTGGCCTCCTATA 60.469 60.000 3.32 0.00 43.44 1.31
54 55 0.388649 GTGGCCTCCTATATGCGTCG 60.389 60.000 3.32 0.00 0.00 5.12
70 71 0.533951 GTCGGGTCCCTATTTGACGT 59.466 55.000 6.29 0.00 33.46 4.34
79 80 2.223180 CCCTATTTGACGTAAAAGGCGC 60.223 50.000 4.06 0.00 31.11 6.53
80 81 2.223180 CCTATTTGACGTAAAAGGCGCC 60.223 50.000 21.89 21.89 0.00 6.53
81 82 1.240256 ATTTGACGTAAAAGGCGCCA 58.760 45.000 31.54 4.11 0.00 5.69
82 83 1.240256 TTTGACGTAAAAGGCGCCAT 58.760 45.000 31.54 15.82 0.00 4.40
83 84 2.096220 TTGACGTAAAAGGCGCCATA 57.904 45.000 31.54 15.90 0.00 2.74
84 85 2.319136 TGACGTAAAAGGCGCCATAT 57.681 45.000 31.54 16.25 0.00 1.78
85 86 3.455990 TGACGTAAAAGGCGCCATATA 57.544 42.857 31.54 15.11 0.00 0.86
86 87 3.386486 TGACGTAAAAGGCGCCATATAG 58.614 45.455 31.54 17.18 0.00 1.31
87 88 2.735134 GACGTAAAAGGCGCCATATAGG 59.265 50.000 31.54 22.96 41.84 2.57
88 89 2.366266 ACGTAAAAGGCGCCATATAGGA 59.634 45.455 31.54 3.47 41.22 2.94
89 90 2.993899 CGTAAAAGGCGCCATATAGGAG 59.006 50.000 31.54 8.83 41.22 3.69
97 98 3.502191 CGCCATATAGGAGCTCTTCTC 57.498 52.381 14.64 0.00 41.22 2.87
98 99 2.822561 CGCCATATAGGAGCTCTTCTCA 59.177 50.000 14.64 0.00 43.70 3.27
99 100 3.256879 CGCCATATAGGAGCTCTTCTCAA 59.743 47.826 14.64 0.00 43.70 3.02
100 101 4.617995 CGCCATATAGGAGCTCTTCTCAAG 60.618 50.000 14.64 0.00 43.70 3.02
125 126 3.192422 CCATAAAAATGGGCACTCGAACA 59.808 43.478 0.00 0.00 38.04 3.18
128 129 3.369546 AAAATGGGCACTCGAACAAAG 57.630 42.857 0.00 0.00 0.00 2.77
132 133 2.695359 TGGGCACTCGAACAAAGATAC 58.305 47.619 0.00 0.00 0.00 2.24
147 149 8.920509 AACAAAGATACTGTTGTAAAAACCAC 57.079 30.769 0.00 0.00 36.97 4.16
217 219 8.434589 AAAGAATGGGTGAAATATTTTCTGGA 57.565 30.769 1.43 0.00 0.00 3.86
235 237 9.909644 TTTTCTGGACGAAGATATACTAATAGC 57.090 33.333 0.00 0.00 32.21 2.97
242 244 9.499585 GACGAAGATATACTAATAGCGCAATAA 57.500 33.333 11.47 0.00 0.00 1.40
260 262 2.979814 AAGTGCACCCAACCTTTTTC 57.020 45.000 14.63 0.00 0.00 2.29
270 272 5.773176 CACCCAACCTTTTTCTATAACCACT 59.227 40.000 0.00 0.00 0.00 4.00
304 306 4.200447 AGTGTATACTCATACTGGCCCT 57.800 45.455 0.00 0.00 38.30 5.19
324 326 7.719633 TGGCCCTAAATATGTAAAGCTCTAAAG 59.280 37.037 0.00 0.00 0.00 1.85
327 329 9.847224 CCCTAAATATGTAAAGCTCTAAAGGAA 57.153 33.333 0.00 0.00 0.00 3.36
338 388 3.053917 GCTCTAAAGGAATGGGGTGGTAA 60.054 47.826 0.00 0.00 0.00 2.85
357 407 9.998106 GGTGGTAAGAATATGTGTGTCTATATT 57.002 33.333 0.00 0.00 33.43 1.28
403 453 7.289587 TGCTTTGAAAACTGCTTTCTTAAAC 57.710 32.000 5.28 0.00 43.42 2.01
405 455 5.942325 TTGAAAACTGCTTTCTTAAACGC 57.058 34.783 5.28 0.00 43.42 4.84
435 485 3.205282 CCCCTCTCCTCCCAATACAAATT 59.795 47.826 0.00 0.00 0.00 1.82
439 489 3.118038 TCTCCTCCCAATACAAATTCGGG 60.118 47.826 0.00 0.00 38.34 5.14
443 493 1.687996 CCCAATACAAATTCGGGCCCT 60.688 52.381 22.43 0.36 0.00 5.19
452 502 4.401202 ACAAATTCGGGCCCTACTTATTTG 59.599 41.667 25.82 25.82 37.46 2.32
453 503 3.945640 ATTCGGGCCCTACTTATTTGT 57.054 42.857 22.43 0.00 0.00 2.83
473 523 6.811253 TTGTCAAACTTGCCTATATTTCGT 57.189 33.333 0.00 0.00 0.00 3.85
480 530 6.787085 ACTTGCCTATATTTCGTTCATAGC 57.213 37.500 0.00 0.00 0.00 2.97
503 553 3.398629 ACCCTACTACCTCTATCCTGGTC 59.601 52.174 0.00 0.00 37.74 4.02
522 601 7.349859 TCCTGGTCTGTAAATTGGACCTAATAT 59.650 37.037 15.96 0.00 46.76 1.28
553 632 6.498651 ACATATCCGGATGAAGGAAGTAATCT 59.501 38.462 27.55 0.00 41.69 2.40
599 700 4.081198 TGAGTTGGGAAGCAAATGTTGTTT 60.081 37.500 0.00 0.00 36.77 2.83
606 707 4.633565 GGAAGCAAATGTTGTTTTTGGACA 59.366 37.500 0.00 0.00 34.10 4.02
699 801 3.598246 GTCTTAAAACAAACGATGCTCGC 59.402 43.478 5.63 0.00 45.12 5.03
732 834 4.285775 TGGCTGTATCCAATATCCAATCGA 59.714 41.667 0.00 0.00 32.18 3.59
760 862 2.203294 GTTCCGTGGCACCCAAGT 60.203 61.111 12.86 0.00 34.18 3.16
871 998 1.226547 CAACGCCACGCACACTTTT 60.227 52.632 0.00 0.00 0.00 2.27
886 1014 1.436752 ACTTTTCCCCAATCCCCACAT 59.563 47.619 0.00 0.00 0.00 3.21
898 1026 1.739049 CCCACATCTCTCTCGCTCC 59.261 63.158 0.00 0.00 0.00 4.70
902 1030 0.754957 ACATCTCTCTCGCTCCCAGG 60.755 60.000 0.00 0.00 0.00 4.45
963 1091 2.868331 CACGCGTACGGACACTCG 60.868 66.667 13.44 12.97 46.04 4.18
964 1092 3.043713 ACGCGTACGGACACTCGA 61.044 61.111 11.67 0.00 46.04 4.04
965 1093 2.572647 CGCGTACGGACACTCGAC 60.573 66.667 18.39 0.00 34.97 4.20
967 1095 2.482374 CGTACGGACACTCGACCC 59.518 66.667 7.57 0.00 0.00 4.46
968 1096 2.880648 GTACGGACACTCGACCCC 59.119 66.667 0.00 0.00 0.00 4.95
1145 1286 1.354506 CCGTCGTAGCCGAGGTAAG 59.645 63.158 4.75 0.00 45.26 2.34
1150 1291 1.515954 GTAGCCGAGGTAAGCAGCA 59.484 57.895 0.00 0.00 0.00 4.41
1160 1301 0.179124 GTAAGCAGCACCTCCTCTCG 60.179 60.000 0.00 0.00 0.00 4.04
1170 1311 0.964358 CCTCCTCTCGTTACCCGTGT 60.964 60.000 0.00 0.00 37.94 4.49
1174 1348 2.236146 TCCTCTCGTTACCCGTGTAGTA 59.764 50.000 0.00 0.00 37.94 1.82
1176 1350 3.265791 CTCTCGTTACCCGTGTAGTAGT 58.734 50.000 0.00 0.00 37.94 2.73
1180 1354 1.751351 GTTACCCGTGTAGTAGTCCCC 59.249 57.143 0.00 0.00 0.00 4.81
1204 1378 2.685388 GGCTAGGGTTTGATTTCTGCTC 59.315 50.000 0.00 0.00 0.00 4.26
1251 1427 3.810896 GACCAAATCGGCGCCACC 61.811 66.667 28.98 0.00 39.03 4.61
1254 1430 1.525995 CCAAATCGGCGCCACCTAT 60.526 57.895 28.98 11.07 35.61 2.57
1257 1433 0.249911 AAATCGGCGCCACCTATCTC 60.250 55.000 28.98 0.00 35.61 2.75
1264 1445 0.105039 CGCCACCTATCTCTGGGAAC 59.895 60.000 0.00 0.00 0.00 3.62
1291 1473 3.181449 ACCATGTTTTGCCCCTTTTAACC 60.181 43.478 0.00 0.00 0.00 2.85
1292 1474 3.181450 CCATGTTTTGCCCCTTTTAACCA 60.181 43.478 0.00 0.00 0.00 3.67
1302 1484 3.815401 CCCCTTTTAACCATAGATCTGCG 59.185 47.826 5.18 0.00 0.00 5.18
1356 1538 3.056035 AGTCCGTTGGGAATCTTCTGTAC 60.056 47.826 0.00 0.00 46.08 2.90
1384 1566 1.155859 AGCTGCACCAATTTCCCCA 59.844 52.632 1.02 0.00 0.00 4.96
1389 1571 0.899717 GCACCAATTTCCCCAGCTGA 60.900 55.000 17.39 0.00 0.00 4.26
1424 1612 0.391130 TGCGTGTGACTTATGAGGGC 60.391 55.000 0.00 0.00 0.00 5.19
1489 1677 0.392998 ATGCACTTGTCCATCGTCCC 60.393 55.000 0.00 0.00 0.00 4.46
1528 1716 6.800408 ACATCGTTTCGACGAAGGTATATATG 59.200 38.462 10.61 10.67 45.62 1.78
1584 1777 4.383649 CAACACACAGTTTGCATTATCTGC 59.616 41.667 0.00 0.00 44.67 4.26
1639 1834 2.687935 TGTTTCAGTGCTTGTTTCTCCC 59.312 45.455 0.00 0.00 0.00 4.30
1663 1858 3.950397 TGCCGTGGATCTGAAGTATTTT 58.050 40.909 0.00 0.00 0.00 1.82
1725 1923 1.727335 GCTGCTCTGTCGTTTCTTACC 59.273 52.381 0.00 0.00 0.00 2.85
1875 2940 8.095937 ACTGTACACTAAAAATTTCTACCAGC 57.904 34.615 0.00 0.00 0.00 4.85
1934 2999 8.483307 AGAATATTGAATTGGTGCACATTTTC 57.517 30.769 20.43 16.77 0.00 2.29
1937 3002 3.391965 TGAATTGGTGCACATTTTCTGC 58.608 40.909 20.43 0.00 35.03 4.26
1942 3007 1.527696 GTGCACATTTTCTGCGATCG 58.472 50.000 13.17 11.69 37.46 3.69
2320 3624 3.003378 GGTTGTATTGCCTCGCCTTTATC 59.997 47.826 0.00 0.00 0.00 1.75
2333 3646 5.741011 TCGCCTTTATCTTGAACCACTTAT 58.259 37.500 0.00 0.00 0.00 1.73
2447 3760 6.048732 AGAAGAAGGAAAAACCAGCAAAAA 57.951 33.333 0.00 0.00 42.04 1.94
2467 3780 2.957402 TTGAGGTTGGTGAGCTGAAT 57.043 45.000 0.00 0.00 35.91 2.57
2615 4019 6.467194 CCTTATACAATATTTCCCCAGCCAGA 60.467 42.308 0.00 0.00 0.00 3.86
2826 4261 7.700322 TCATACAGAAATATTCTTCAGCGAC 57.300 36.000 0.00 0.00 38.11 5.19
3101 4552 8.141298 TGGTCACTGTTATCTCAGGTAATAAA 57.859 34.615 0.00 0.00 39.48 1.40
3140 4609 6.863126 AGTTTTCTCCGCTTGTCATTTTTATG 59.137 34.615 0.00 0.00 0.00 1.90
3240 4710 6.403866 TGACCATGCCATTGAATAAATACC 57.596 37.500 0.00 0.00 0.00 2.73
3287 4759 9.036980 TGCTTATTCTCTTATTATACTCCCTCC 57.963 37.037 0.00 0.00 0.00 4.30
3288 4760 8.192110 GCTTATTCTCTTATTATACTCCCTCCG 58.808 40.741 0.00 0.00 0.00 4.63
3290 4762 7.706100 ATTCTCTTATTATACTCCCTCCGTC 57.294 40.000 0.00 0.00 0.00 4.79
3291 4763 5.568392 TCTCTTATTATACTCCCTCCGTCC 58.432 45.833 0.00 0.00 0.00 4.79
3292 4764 4.670765 TCTTATTATACTCCCTCCGTCCC 58.329 47.826 0.00 0.00 0.00 4.46
3293 4765 4.106825 TCTTATTATACTCCCTCCGTCCCA 59.893 45.833 0.00 0.00 0.00 4.37
3294 4766 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3295 4767 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3296 4768 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3297 4769 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3298 4770 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3299 4771 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3300 4772 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3301 4773 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3302 4774 3.452878 TCCCTCCGTCCCAAAATAAGTA 58.547 45.455 0.00 0.00 0.00 2.24
3303 4775 4.042174 TCCCTCCGTCCCAAAATAAGTAT 58.958 43.478 0.00 0.00 0.00 2.12
3304 4776 4.102054 TCCCTCCGTCCCAAAATAAGTATC 59.898 45.833 0.00 0.00 0.00 2.24
3305 4777 4.056050 CCTCCGTCCCAAAATAAGTATCG 58.944 47.826 0.00 0.00 0.00 2.92
3306 4778 3.460103 TCCGTCCCAAAATAAGTATCGC 58.540 45.455 0.00 0.00 0.00 4.58
3307 4779 3.133362 TCCGTCCCAAAATAAGTATCGCT 59.867 43.478 0.00 0.00 0.00 4.93
3308 4780 3.247648 CCGTCCCAAAATAAGTATCGCTG 59.752 47.826 0.00 0.00 0.00 5.18
3309 4781 4.116961 CGTCCCAAAATAAGTATCGCTGA 58.883 43.478 0.00 0.00 0.00 4.26
3310 4782 4.569162 CGTCCCAAAATAAGTATCGCTGAA 59.431 41.667 0.00 0.00 0.00 3.02
3311 4783 5.236478 CGTCCCAAAATAAGTATCGCTGAAT 59.764 40.000 0.00 0.00 0.00 2.57
3312 4784 6.238374 CGTCCCAAAATAAGTATCGCTGAATT 60.238 38.462 0.00 0.00 0.00 2.17
3313 4785 7.480810 GTCCCAAAATAAGTATCGCTGAATTT 58.519 34.615 0.00 0.00 0.00 1.82
3314 4786 7.432252 GTCCCAAAATAAGTATCGCTGAATTTG 59.568 37.037 0.00 0.00 0.00 2.32
3315 4787 7.122055 TCCCAAAATAAGTATCGCTGAATTTGT 59.878 33.333 0.00 0.00 0.00 2.83
3316 4788 7.220683 CCCAAAATAAGTATCGCTGAATTTGTG 59.779 37.037 0.00 0.00 0.00 3.33
3317 4789 7.754924 CCAAAATAAGTATCGCTGAATTTGTGT 59.245 33.333 0.00 0.00 0.00 3.72
3318 4790 9.767684 CAAAATAAGTATCGCTGAATTTGTGTA 57.232 29.630 0.00 0.00 0.00 2.90
3321 4793 9.988350 AATAAGTATCGCTGAATTTGTGTAAAG 57.012 29.630 0.00 0.00 0.00 1.85
3322 4794 7.435068 AAGTATCGCTGAATTTGTGTAAAGT 57.565 32.000 0.00 0.00 0.00 2.66
3323 4795 7.435068 AGTATCGCTGAATTTGTGTAAAGTT 57.565 32.000 0.00 0.00 0.00 2.66
3324 4796 8.542497 AGTATCGCTGAATTTGTGTAAAGTTA 57.458 30.769 0.00 0.00 0.00 2.24
3325 4797 8.995220 AGTATCGCTGAATTTGTGTAAAGTTAA 58.005 29.630 0.00 0.00 0.00 2.01
3326 4798 9.769093 GTATCGCTGAATTTGTGTAAAGTTAAT 57.231 29.630 0.00 0.00 0.00 1.40
3328 4800 9.769093 ATCGCTGAATTTGTGTAAAGTTAATAC 57.231 29.630 0.00 0.00 0.00 1.89
3329 4801 8.775527 TCGCTGAATTTGTGTAAAGTTAATACA 58.224 29.630 0.00 0.00 0.00 2.29
3330 4802 9.388346 CGCTGAATTTGTGTAAAGTTAATACAA 57.612 29.630 0.00 0.00 35.21 2.41
3349 4821 8.542497 AATACAACTTTGTACTAAATCAGCGA 57.458 30.769 3.95 0.00 45.47 4.93
3350 4822 6.224420 ACAACTTTGTACTAAATCAGCGAC 57.776 37.500 0.00 0.00 40.16 5.19
3351 4823 5.756347 ACAACTTTGTACTAAATCAGCGACA 59.244 36.000 0.00 0.00 40.16 4.35
3352 4824 5.840940 ACTTTGTACTAAATCAGCGACAC 57.159 39.130 0.00 0.00 0.00 3.67
3353 4825 5.539048 ACTTTGTACTAAATCAGCGACACT 58.461 37.500 0.00 0.00 0.00 3.55
3354 4826 5.989777 ACTTTGTACTAAATCAGCGACACTT 59.010 36.000 0.00 0.00 0.00 3.16
3355 4827 7.149973 ACTTTGTACTAAATCAGCGACACTTA 58.850 34.615 0.00 0.00 0.00 2.24
3356 4828 7.817962 ACTTTGTACTAAATCAGCGACACTTAT 59.182 33.333 0.00 0.00 0.00 1.73
3357 4829 8.542497 TTTGTACTAAATCAGCGACACTTATT 57.458 30.769 0.00 0.00 0.00 1.40
3358 4830 7.520119 TGTACTAAATCAGCGACACTTATTG 57.480 36.000 0.00 0.00 0.00 1.90
3359 4831 7.094631 TGTACTAAATCAGCGACACTTATTGT 58.905 34.615 0.00 0.00 43.10 2.71
3360 4832 8.245491 TGTACTAAATCAGCGACACTTATTGTA 58.755 33.333 0.00 0.00 39.17 2.41
3361 4833 7.521509 ACTAAATCAGCGACACTTATTGTAC 57.478 36.000 0.00 0.00 39.17 2.90
3362 4834 7.321153 ACTAAATCAGCGACACTTATTGTACT 58.679 34.615 0.00 0.00 39.17 2.73
3363 4835 8.464404 ACTAAATCAGCGACACTTATTGTACTA 58.536 33.333 0.00 0.00 39.17 1.82
3364 4836 9.297586 CTAAATCAGCGACACTTATTGTACTAA 57.702 33.333 0.00 0.00 39.17 2.24
3365 4837 7.521509 AATCAGCGACACTTATTGTACTAAC 57.478 36.000 0.00 0.00 39.17 2.34
3366 4838 6.263516 TCAGCGACACTTATTGTACTAACT 57.736 37.500 0.00 0.00 39.17 2.24
3367 4839 6.684686 TCAGCGACACTTATTGTACTAACTT 58.315 36.000 0.00 0.00 39.17 2.66
3368 4840 7.149973 TCAGCGACACTTATTGTACTAACTTT 58.850 34.615 0.00 0.00 39.17 2.66
3369 4841 7.115805 TCAGCGACACTTATTGTACTAACTTTG 59.884 37.037 0.00 0.00 39.17 2.77
3370 4842 6.927381 AGCGACACTTATTGTACTAACTTTGT 59.073 34.615 0.00 0.00 39.17 2.83
3371 4843 8.084073 AGCGACACTTATTGTACTAACTTTGTA 58.916 33.333 0.00 0.00 39.17 2.41
3372 4844 8.158445 GCGACACTTATTGTACTAACTTTGTAC 58.842 37.037 6.58 6.58 39.17 2.90
3373 4845 9.403110 CGACACTTATTGTACTAACTTTGTACT 57.597 33.333 12.73 0.00 39.17 2.73
3382 4854 8.456904 TGTACTAACTTTGTACTAAATCAGCG 57.543 34.615 12.73 0.00 40.44 5.18
3383 4855 8.298854 TGTACTAACTTTGTACTAAATCAGCGA 58.701 33.333 12.73 0.00 40.44 4.93
3534 6179 6.005823 TCTCATTCATGTCAAAATGGACTGT 58.994 36.000 10.00 0.00 38.61 3.55
3538 6183 5.185668 TCATGTCAAAATGGACTGTTGTG 57.814 39.130 0.00 0.00 38.61 3.33
3893 6579 2.160721 TAGGCCCATCGAAGAGTCTT 57.839 50.000 4.68 4.68 43.63 3.01
3919 6605 3.091417 GTTATTTGAAGACATGCGACGC 58.909 45.455 14.19 14.19 0.00 5.19
3934 6620 1.573829 GACGCGGGTTGATTGCTGAA 61.574 55.000 12.47 0.00 0.00 3.02
4067 6753 7.092137 TGATGAATTTGAATGTCCATCTCAC 57.908 36.000 0.00 0.00 33.55 3.51
4208 6898 9.944663 GAAAACATTACACATTCTGTAAGTTCA 57.055 29.630 0.01 0.00 46.37 3.18
4556 7261 3.749064 GCAGGACTGAGGCGACGA 61.749 66.667 0.00 0.00 0.00 4.20
4625 7331 6.428159 GGATAACGAGAAGGTAAATGCATGAT 59.572 38.462 0.00 0.00 0.00 2.45
4628 7334 5.883661 ACGAGAAGGTAAATGCATGATTTG 58.116 37.500 0.00 0.00 35.74 2.32
4731 7456 6.590068 AGCACTTCTTTCTATATGCAGTGAT 58.410 36.000 0.00 0.00 35.51 3.06
4809 7534 1.081892 CAGCTTCTCGAACCATGGTG 58.918 55.000 20.60 7.07 0.00 4.17
4822 7555 1.624813 CCATGGTGGTTTTGCATCCTT 59.375 47.619 2.57 0.00 31.35 3.36
4839 7572 3.904717 TCCTTTAAAGGTTTGGCACTCA 58.095 40.909 29.19 7.40 46.54 3.41
4867 7600 4.325972 TGCTGCAATTCACTTCATGTCTA 58.674 39.130 0.00 0.00 0.00 2.59
4868 7601 4.761227 TGCTGCAATTCACTTCATGTCTAA 59.239 37.500 0.00 0.00 0.00 2.10
5089 7880 6.757237 TGTTATAGGTTTACCACGTCTTTGA 58.243 36.000 1.13 0.00 38.89 2.69
5123 7916 9.341899 GTTTTACTTTGTGTCCATGCTAAATAG 57.658 33.333 0.00 0.00 0.00 1.73
5299 8094 9.086336 CATTTGTTAAGAAAGTTGAGCTGAAAA 57.914 29.630 3.99 0.00 0.00 2.29
5338 8138 4.879197 TCACCTACTCCATATCTGCATG 57.121 45.455 0.00 0.00 0.00 4.06
5346 8146 7.498900 CCTACTCCATATCTGCATGTTTACAAA 59.501 37.037 0.00 0.00 0.00 2.83
5484 8287 5.911378 AGACCTCTAAACCTAAGGTAACG 57.089 43.478 0.00 0.00 43.43 3.18
5505 8321 6.254281 ACGGGTGATTTGAATCTTTACAAG 57.746 37.500 5.42 0.00 36.39 3.16
5523 8339 4.223953 ACAAGTCTACTCAGGGAGTTGAA 58.776 43.478 18.44 0.00 43.38 2.69
5539 8365 5.637387 GGAGTTGAAACACACACACAAAAAT 59.363 36.000 0.00 0.00 0.00 1.82
5714 8551 5.084818 TGTCATTACTGATGTGTGTAGGG 57.915 43.478 0.00 0.00 37.06 3.53
5715 8552 4.775253 TGTCATTACTGATGTGTGTAGGGA 59.225 41.667 0.00 0.00 37.06 4.20
5730 8567 5.070685 GTGTAGGGATGGAAAGTCACTTTT 58.929 41.667 3.76 0.00 33.49 2.27
5731 8568 5.181433 GTGTAGGGATGGAAAGTCACTTTTC 59.819 44.000 3.76 2.33 33.49 2.29
5744 8581 6.604735 AGTCACTTTTCTGTGTATGTGTTC 57.395 37.500 0.00 0.00 38.90 3.18
5793 8651 0.465097 AAGATTGGCTGGGCGATCTG 60.465 55.000 22.12 0.00 34.23 2.90
5850 8708 1.909141 CTGTACCGTCACTCGCGACT 61.909 60.000 3.71 0.00 38.35 4.18
5916 8786 6.246163 TCTCTGAACCTCTGTATACTGTTGA 58.754 40.000 4.17 0.00 0.00 3.18
5938 8814 0.895530 TTCCTCTCCGTCGCTTGATT 59.104 50.000 0.00 0.00 0.00 2.57
6094 8988 4.083271 GCAAATTTAGTGAAGAAGCTCCGT 60.083 41.667 0.00 0.00 0.00 4.69
6220 9121 9.144747 GGCTTGTGATGACTATTATAGTATGTG 57.855 37.037 4.71 0.00 39.59 3.21
6257 9158 7.274904 CGATCAAAATTTGGATGATCATATGCC 59.725 37.037 22.26 6.58 46.21 4.40
6267 9168 6.434965 TGGATGATCATATGCCCAAATAGTTG 59.565 38.462 8.54 0.00 34.25 3.16
6286 9187 0.811616 GCTCAGATTACCTGCCCGTG 60.812 60.000 0.00 0.00 42.62 4.94
6287 9188 0.824109 CTCAGATTACCTGCCCGTGA 59.176 55.000 0.00 0.00 42.62 4.35
6289 9190 1.837439 TCAGATTACCTGCCCGTGATT 59.163 47.619 0.00 0.00 42.62 2.57
6293 9194 0.958382 TTACCTGCCCGTGATTGTGC 60.958 55.000 0.00 0.00 0.00 4.57
6338 9240 3.694043 TCCGTTTCTTCATGGATCACA 57.306 42.857 0.00 0.00 0.00 3.58
6341 9243 2.094258 CGTTTCTTCATGGATCACACCG 59.906 50.000 0.00 0.00 0.00 4.94
6348 9250 0.398522 ATGGATCACACCGCCCTCTA 60.399 55.000 0.00 0.00 0.00 2.43
6350 9252 0.105039 GGATCACACCGCCCTCTAAG 59.895 60.000 0.00 0.00 0.00 2.18
6358 9264 0.613777 CCGCCCTCTAAGAAACCAGT 59.386 55.000 0.00 0.00 0.00 4.00
6381 9287 4.335400 TTTTCCTTGGTTTTCTCCATGC 57.665 40.909 0.00 0.00 37.33 4.06
6382 9288 2.978156 TCCTTGGTTTTCTCCATGCT 57.022 45.000 0.00 0.00 37.33 3.79
6383 9289 3.243359 TCCTTGGTTTTCTCCATGCTT 57.757 42.857 0.00 0.00 37.33 3.91
6384 9290 3.157087 TCCTTGGTTTTCTCCATGCTTC 58.843 45.455 0.00 0.00 37.33 3.86
6385 9291 3.160269 CCTTGGTTTTCTCCATGCTTCT 58.840 45.455 0.00 0.00 37.33 2.85
6386 9292 3.057033 CCTTGGTTTTCTCCATGCTTCTG 60.057 47.826 0.00 0.00 37.33 3.02
6387 9293 3.507162 TGGTTTTCTCCATGCTTCTGA 57.493 42.857 0.00 0.00 31.96 3.27
6388 9294 3.831323 TGGTTTTCTCCATGCTTCTGAA 58.169 40.909 0.00 0.00 31.96 3.02
6389 9295 4.214310 TGGTTTTCTCCATGCTTCTGAAA 58.786 39.130 0.00 0.00 31.96 2.69
6390 9296 4.648762 TGGTTTTCTCCATGCTTCTGAAAA 59.351 37.500 0.00 0.00 35.24 2.29
6391 9297 5.221303 TGGTTTTCTCCATGCTTCTGAAAAG 60.221 40.000 0.00 0.00 37.32 2.27
6392 9298 4.510038 TTTCTCCATGCTTCTGAAAAGC 57.490 40.909 2.87 2.87 43.29 3.51
6401 9307 4.827304 GCTTCTGAAAAGCACTTCTCTT 57.173 40.909 4.96 0.00 42.56 2.85
6402 9308 4.535116 GCTTCTGAAAAGCACTTCTCTTG 58.465 43.478 4.96 0.00 42.56 3.02
6403 9309 4.535116 CTTCTGAAAAGCACTTCTCTTGC 58.465 43.478 0.00 0.00 40.52 4.01
6432 9338 8.568732 TTTGTGTTTTCTTCGGTATTCATTTC 57.431 30.769 0.00 0.00 0.00 2.17
6433 9339 6.367421 TGTGTTTTCTTCGGTATTCATTTCG 58.633 36.000 0.00 0.00 0.00 3.46
6435 9341 6.518736 GTGTTTTCTTCGGTATTCATTTCGTC 59.481 38.462 0.00 0.00 0.00 4.20
6439 9345 6.688637 TCTTCGGTATTCATTTCGTCTCTA 57.311 37.500 0.00 0.00 0.00 2.43
6457 9363 2.578480 TCTATATTGCCCCACCACAACA 59.422 45.455 0.00 0.00 0.00 3.33
6458 9364 1.555967 ATATTGCCCCACCACAACAC 58.444 50.000 0.00 0.00 0.00 3.32
6459 9365 0.186143 TATTGCCCCACCACAACACA 59.814 50.000 0.00 0.00 0.00 3.72
6460 9366 0.471591 ATTGCCCCACCACAACACAT 60.472 50.000 0.00 0.00 0.00 3.21
6461 9367 1.398174 TTGCCCCACCACAACACATG 61.398 55.000 0.00 0.00 0.00 3.21
6519 9943 1.580845 CTGCTTGCCGGTTTCCTCAG 61.581 60.000 1.90 0.00 0.00 3.35
6521 9945 1.374947 CTTGCCGGTTTCCTCAGGA 59.625 57.895 1.90 0.00 0.00 3.86
6562 9989 3.904965 TGGGGTGTGTGAACTAGTTGATA 59.095 43.478 14.14 0.00 0.00 2.15
6563 9990 4.251268 GGGGTGTGTGAACTAGTTGATAC 58.749 47.826 14.14 13.86 0.00 2.24
6564 9991 3.924686 GGGTGTGTGAACTAGTTGATACG 59.075 47.826 14.14 0.00 0.00 3.06
6565 9992 4.553323 GGTGTGTGAACTAGTTGATACGT 58.447 43.478 14.14 0.00 0.00 3.57
6566 9993 5.335897 GGGTGTGTGAACTAGTTGATACGTA 60.336 44.000 14.14 0.00 0.00 3.57
6567 9994 6.327934 GGTGTGTGAACTAGTTGATACGTAT 58.672 40.000 14.14 8.05 0.00 3.06
6570 9997 9.512435 GTGTGTGAACTAGTTGATACGTATATT 57.488 33.333 14.14 0.00 0.00 1.28
6582 10011 7.342318 TGATACGTATATTTTTAAGAGCGCC 57.658 36.000 8.34 0.00 0.00 6.53
6627 10056 3.960571 AGTCCACCATTCTTGAATCAGG 58.039 45.455 0.00 0.00 0.00 3.86
6688 10117 0.745486 TGGCATGCTTGGATCTCACG 60.745 55.000 18.92 0.00 0.00 4.35
6697 10126 1.417288 TGGATCTCACGATGGCATCT 58.583 50.000 23.97 9.44 0.00 2.90
6700 10129 3.056322 TGGATCTCACGATGGCATCTATG 60.056 47.826 23.97 20.54 0.00 2.23
6703 10132 1.797046 CTCACGATGGCATCTATGTGC 59.203 52.381 23.97 0.00 44.31 4.57
6744 10189 0.528249 CAAGCTTGTGTGTGGGCAAC 60.528 55.000 18.65 0.00 0.00 4.17
6802 10512 3.255642 GCATGTGGTACTTTGTGATGGTT 59.744 43.478 0.00 0.00 0.00 3.67
6819 10531 4.837093 TGGTTTCTCTTCCATTACCGAT 57.163 40.909 0.00 0.00 0.00 4.18
6847 10835 4.082136 GTCAAGACCATCTCCGAACTAAGT 60.082 45.833 0.00 0.00 0.00 2.24
6909 10897 1.497309 AAAGGATGTCGAGGGGGCAA 61.497 55.000 0.00 0.00 0.00 4.52
6910 10898 1.497309 AAGGATGTCGAGGGGGCAAA 61.497 55.000 0.00 0.00 0.00 3.68
6933 10921 1.454847 TGCTCCAAGCCCGTTTTGT 60.455 52.632 0.00 0.00 41.51 2.83
6936 10924 1.892209 CTCCAAGCCCGTTTTGTAGT 58.108 50.000 0.00 0.00 0.00 2.73
6945 10933 3.427773 GCCCGTTTTGTAGTTGTTTGTGA 60.428 43.478 0.00 0.00 0.00 3.58
6950 10938 6.403418 CCGTTTTGTAGTTGTTTGTGAACCTA 60.403 38.462 0.00 0.00 34.80 3.08
6958 10946 7.316544 AGTTGTTTGTGAACCTACTAAACTG 57.683 36.000 0.00 0.00 34.80 3.16
6978 10966 3.420893 TGTGGGATCCAAAGACATTGTC 58.579 45.455 15.23 8.82 37.32 3.18
6979 10967 3.181435 TGTGGGATCCAAAGACATTGTCA 60.181 43.478 18.57 0.00 37.32 3.58
6983 10971 4.766891 GGGATCCAAAGACATTGTCAAAGA 59.233 41.667 18.57 9.77 37.32 2.52
6990 10978 7.395206 TCCAAAGACATTGTCAAAGATGATGAT 59.605 33.333 18.57 0.00 38.01 2.45
7004 10992 5.621193 AGATGATGATGCTTGTGATCATGA 58.379 37.500 0.00 0.00 40.03 3.07
7009 10997 5.907866 TGATGCTTGTGATCATGAACAAT 57.092 34.783 12.25 0.84 35.82 2.71
7042 11787 2.025887 GGATGAGGGTGATGGAGTTTGT 60.026 50.000 0.00 0.00 0.00 2.83
7047 11792 1.474077 GGGTGATGGAGTTTGTCATGC 59.526 52.381 0.00 0.00 0.00 4.06
7051 11796 3.126514 GTGATGGAGTTTGTCATGCTCTG 59.873 47.826 0.00 0.00 0.00 3.35
7061 11806 5.787953 TTGTCATGCTCTGGATTTTCAAA 57.212 34.783 0.00 0.00 0.00 2.69
7062 11807 5.988310 TGTCATGCTCTGGATTTTCAAAT 57.012 34.783 0.00 0.00 0.00 2.32
7063 11808 5.957798 TGTCATGCTCTGGATTTTCAAATC 58.042 37.500 3.97 3.97 43.12 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.778143 GGCGTCCCGTGGATTGCT 62.778 66.667 14.84 0.00 36.58 3.91
34 35 0.388649 GACGCATATAGGAGGCCACG 60.389 60.000 5.01 0.00 0.00 4.94
47 48 0.179056 CAAATAGGGACCCGACGCAT 60.179 55.000 4.40 0.00 0.00 4.73
54 55 3.943381 CCTTTTACGTCAAATAGGGACCC 59.057 47.826 0.59 0.59 31.55 4.46
70 71 3.053831 GCTCCTATATGGCGCCTTTTA 57.946 47.619 29.70 19.00 40.51 1.52
79 80 4.819769 GCTTGAGAAGAGCTCCTATATGG 58.180 47.826 10.93 0.00 43.26 2.74
89 90 5.886960 TTTTTATGGAGCTTGAGAAGAGC 57.113 39.130 0.00 0.00 40.43 4.09
90 91 6.183360 CCCATTTTTATGGAGCTTGAGAAGAG 60.183 42.308 5.75 0.00 44.39 2.85
91 92 5.653769 CCCATTTTTATGGAGCTTGAGAAGA 59.346 40.000 5.75 0.00 44.39 2.87
92 93 5.680665 GCCCATTTTTATGGAGCTTGAGAAG 60.681 44.000 5.75 0.00 44.39 2.85
93 94 4.160252 GCCCATTTTTATGGAGCTTGAGAA 59.840 41.667 5.75 0.00 44.39 2.87
94 95 3.701040 GCCCATTTTTATGGAGCTTGAGA 59.299 43.478 5.75 0.00 44.39 3.27
95 96 3.448301 TGCCCATTTTTATGGAGCTTGAG 59.552 43.478 5.75 0.00 44.39 3.02
96 97 3.195396 GTGCCCATTTTTATGGAGCTTGA 59.805 43.478 5.75 0.00 44.39 3.02
97 98 3.196254 AGTGCCCATTTTTATGGAGCTTG 59.804 43.478 5.75 0.00 44.39 4.01
98 99 3.444029 AGTGCCCATTTTTATGGAGCTT 58.556 40.909 5.75 0.00 44.39 3.74
99 100 3.026694 GAGTGCCCATTTTTATGGAGCT 58.973 45.455 5.75 0.00 44.39 4.09
100 101 2.223572 CGAGTGCCCATTTTTATGGAGC 60.224 50.000 5.75 7.90 44.39 4.70
125 126 7.648039 TGGTGGTTTTTACAACAGTATCTTT 57.352 32.000 0.00 0.00 30.83 2.52
147 149 3.931468 TCAACATTTTTGTGCACAACTGG 59.069 39.130 31.17 21.46 35.28 4.00
195 197 6.094881 TCGTCCAGAAAATATTTCACCCATTC 59.905 38.462 0.10 0.00 0.00 2.67
217 219 9.504710 CTTATTGCGCTATTAGTATATCTTCGT 57.495 33.333 10.14 0.00 0.00 3.85
242 244 2.159179 AGAAAAAGGTTGGGTGCACT 57.841 45.000 17.98 0.00 0.00 4.40
286 288 8.759782 ACATATTTAGGGCCAGTATGAGTATAC 58.240 37.037 18.21 0.00 39.69 1.47
324 326 4.827284 CACATATTCTTACCACCCCATTCC 59.173 45.833 0.00 0.00 0.00 3.01
327 329 4.229582 ACACACATATTCTTACCACCCCAT 59.770 41.667 0.00 0.00 0.00 4.00
375 425 3.988379 AAGCAGTTTTCAAAGCATCGA 57.012 38.095 0.00 0.00 0.00 3.59
412 462 0.030092 TGTATTGGGAGGAGAGGGGG 60.030 60.000 0.00 0.00 0.00 5.40
413 463 1.893315 TTGTATTGGGAGGAGAGGGG 58.107 55.000 0.00 0.00 0.00 4.79
414 464 4.464947 GAATTTGTATTGGGAGGAGAGGG 58.535 47.826 0.00 0.00 0.00 4.30
415 465 4.130118 CGAATTTGTATTGGGAGGAGAGG 58.870 47.826 0.00 0.00 0.00 3.69
416 466 4.130118 CCGAATTTGTATTGGGAGGAGAG 58.870 47.826 0.00 0.00 40.89 3.20
417 467 3.118038 CCCGAATTTGTATTGGGAGGAGA 60.118 47.826 0.00 0.00 40.89 3.71
418 468 3.214328 CCCGAATTTGTATTGGGAGGAG 58.786 50.000 0.00 0.00 40.89 3.69
419 469 2.685522 GCCCGAATTTGTATTGGGAGGA 60.686 50.000 2.91 0.00 40.89 3.71
420 470 1.681264 GCCCGAATTTGTATTGGGAGG 59.319 52.381 2.91 0.00 40.89 4.30
421 471 1.681264 GGCCCGAATTTGTATTGGGAG 59.319 52.381 2.91 0.00 40.89 4.30
422 472 1.686741 GGGCCCGAATTTGTATTGGGA 60.687 52.381 5.69 0.00 40.89 4.37
423 473 0.750249 GGGCCCGAATTTGTATTGGG 59.250 55.000 5.69 0.00 38.84 4.12
424 474 1.775385 AGGGCCCGAATTTGTATTGG 58.225 50.000 18.44 0.00 0.00 3.16
425 475 3.551846 AGTAGGGCCCGAATTTGTATTG 58.448 45.455 18.44 0.00 0.00 1.90
426 476 3.945640 AGTAGGGCCCGAATTTGTATT 57.054 42.857 18.44 0.00 0.00 1.89
427 477 3.945640 AAGTAGGGCCCGAATTTGTAT 57.054 42.857 18.44 0.00 0.00 2.29
435 485 2.189676 TGACAAATAAGTAGGGCCCGA 58.810 47.619 18.44 8.90 0.00 5.14
439 489 5.161358 GCAAGTTTGACAAATAAGTAGGGC 58.839 41.667 3.49 0.00 0.00 5.19
452 502 6.837992 TGAACGAAATATAGGCAAGTTTGAC 58.162 36.000 0.00 0.00 36.08 3.18
453 503 7.624360 ATGAACGAAATATAGGCAAGTTTGA 57.376 32.000 0.00 0.00 0.00 2.69
471 521 2.957006 AGGTAGTAGGGTGCTATGAACG 59.043 50.000 0.00 0.00 0.00 3.95
473 523 4.537945 AGAGGTAGTAGGGTGCTATGAA 57.462 45.455 0.00 0.00 0.00 2.57
480 530 3.140519 ACCAGGATAGAGGTAGTAGGGTG 59.859 52.174 0.00 0.00 36.07 4.61
522 601 5.144832 TCCTTCATCCGGATATGTAAGTCA 58.855 41.667 18.63 5.04 0.00 3.41
531 610 6.741521 GCAAGATTACTTCCTTCATCCGGATA 60.742 42.308 18.63 0.80 33.70 2.59
533 612 4.683400 GCAAGATTACTTCCTTCATCCGGA 60.683 45.833 6.61 6.61 33.70 5.14
536 615 7.865706 TTTAGCAAGATTACTTCCTTCATCC 57.134 36.000 0.00 0.00 33.70 3.51
573 652 3.565307 ACATTTGCTTCCCAACTCAGAA 58.435 40.909 0.00 0.00 31.97 3.02
575 654 3.068590 ACAACATTTGCTTCCCAACTCAG 59.931 43.478 0.00 0.00 31.97 3.35
576 655 3.030291 ACAACATTTGCTTCCCAACTCA 58.970 40.909 0.00 0.00 31.97 3.41
577 656 3.733443 ACAACATTTGCTTCCCAACTC 57.267 42.857 0.00 0.00 31.97 3.01
599 700 4.068599 TGTGCGTGAATCTTATGTCCAAA 58.931 39.130 0.00 0.00 0.00 3.28
606 707 4.478843 GCATCATGTGCGTGAATCTTAT 57.521 40.909 4.83 0.00 45.23 1.73
732 834 1.810412 GCCACGGAACTTGTTCTCTGT 60.810 52.381 12.44 6.99 0.00 3.41
760 862 2.813474 CGTGGCTTCGGAATGCGA 60.813 61.111 0.00 0.00 0.00 5.10
871 998 0.046242 AGAGATGTGGGGATTGGGGA 59.954 55.000 0.00 0.00 0.00 4.81
886 1014 2.441164 GCCTGGGAGCGAGAGAGA 60.441 66.667 0.00 0.00 0.00 3.10
898 1026 4.101448 CGGACAGGGAAGGCCTGG 62.101 72.222 5.69 0.00 39.38 4.45
902 1030 2.683933 TCTCCGGACAGGGAAGGC 60.684 66.667 0.00 0.00 41.52 4.35
912 1040 3.379445 GGTTCAGGCGTCTCCGGA 61.379 66.667 2.93 2.93 40.77 5.14
1145 1286 0.458716 GTAACGAGAGGAGGTGCTGC 60.459 60.000 0.00 0.00 0.00 5.25
1160 1301 1.751351 GGGGACTACTACACGGGTAAC 59.249 57.143 0.00 0.00 0.00 2.50
1170 1311 1.228063 CTAGCCGCGGGGACTACTA 60.228 63.158 29.38 16.88 34.06 1.82
1180 1354 0.377203 GAAATCAAACCCTAGCCGCG 59.623 55.000 0.00 0.00 0.00 6.46
1204 1378 2.096406 CGCAACTTGCATCGGACG 59.904 61.111 14.10 0.00 45.36 4.79
1226 1402 1.927174 CGCCGATTTGGTCAGAGTAAG 59.073 52.381 0.00 0.00 41.21 2.34
1264 1445 0.975556 GGGGCAAAACATGGTAGGGG 60.976 60.000 0.00 0.00 0.00 4.79
1291 1473 3.677121 GCCTGTTCATACGCAGATCTATG 59.323 47.826 0.00 0.00 34.87 2.23
1292 1474 3.576118 AGCCTGTTCATACGCAGATCTAT 59.424 43.478 0.00 0.00 34.87 1.98
1302 1484 5.057149 CCAGTTATACCAGCCTGTTCATAC 58.943 45.833 0.00 0.00 0.00 2.39
1367 1549 1.593265 CTGGGGAAATTGGTGCAGC 59.407 57.895 9.47 9.47 0.00 5.25
1389 1571 7.023575 GTCACACGCATAAGAATTCTCAAATT 58.976 34.615 8.78 0.00 37.80 1.82
1401 1589 3.804325 CCCTCATAAGTCACACGCATAAG 59.196 47.826 0.00 0.00 0.00 1.73
1424 1612 2.661504 TTCATTCACGAACAAGTGCG 57.338 45.000 0.00 0.00 41.61 5.34
1489 1677 5.330866 CGAAACGATGTAGTTAATGAGAGCG 60.331 44.000 0.00 0.00 33.41 5.03
1528 1716 0.179045 ACATGAATAGGCCGGCAGAC 60.179 55.000 30.85 11.48 0.00 3.51
1584 1777 1.731720 CTTGAGCTCCCGGAAAAGAG 58.268 55.000 12.15 1.15 0.00 2.85
1639 1834 2.898729 ACTTCAGATCCACGGCATAG 57.101 50.000 0.00 0.00 0.00 2.23
1663 1858 6.466812 TCTTGATCTGAAGTGACATAGCAAA 58.533 36.000 0.00 0.00 0.00 3.68
1683 1881 1.002430 TCTAGCTGTGCAGGGTTCTTG 59.998 52.381 0.00 0.00 0.00 3.02
1725 1923 3.254166 CCAAAGATTCAGGACCAGTGTTG 59.746 47.826 0.00 0.00 0.00 3.33
1875 2940 6.143758 CCAAACAACCACATTCTAAAATCACG 59.856 38.462 0.00 0.00 0.00 4.35
1934 2999 0.877649 CCTTCCATGTCCGATCGCAG 60.878 60.000 10.32 0.00 0.00 5.18
1937 3002 1.069765 CCCCTTCCATGTCCGATCG 59.930 63.158 8.51 8.51 0.00 3.69
1942 3007 2.043953 GGTGCCCCTTCCATGTCC 60.044 66.667 0.00 0.00 0.00 4.02
2083 3272 3.819564 TTTATGTGATACCGCTGCTCT 57.180 42.857 0.00 0.00 0.00 4.09
2447 3760 2.957402 TTCAGCTCACCAACCTCAAT 57.043 45.000 0.00 0.00 0.00 2.57
2467 3780 8.536175 GTCATATTTTAAACCCAAAGGATCCAA 58.464 33.333 15.82 0.00 36.73 3.53
2615 4019 9.408648 CAATCTATGGTACCTTATTGTTTTCCT 57.591 33.333 14.36 0.00 0.00 3.36
2656 4066 6.869913 AGATGCATAACACCAACAGAAATTTG 59.130 34.615 0.00 0.00 0.00 2.32
2826 4261 0.535102 GTGCCCTCCATATGTTCCCG 60.535 60.000 1.24 0.00 0.00 5.14
3101 4552 7.721399 AGCGGAGAAAACTGGAAATTCATATAT 59.279 33.333 0.00 0.00 0.00 0.86
3116 4575 6.640907 ACATAAAAATGACAAGCGGAGAAAAC 59.359 34.615 0.00 0.00 0.00 2.43
3119 4578 5.957842 ACATAAAAATGACAAGCGGAGAA 57.042 34.783 0.00 0.00 0.00 2.87
3120 4579 6.170506 AGTACATAAAAATGACAAGCGGAGA 58.829 36.000 0.00 0.00 0.00 3.71
3121 4580 6.422776 AGTACATAAAAATGACAAGCGGAG 57.577 37.500 0.00 0.00 0.00 4.63
3122 4581 6.811253 AAGTACATAAAAATGACAAGCGGA 57.189 33.333 0.00 0.00 0.00 5.54
3212 4682 0.324552 TCAATGGCATGGTCAAGGGG 60.325 55.000 0.00 0.00 0.00 4.79
3240 4710 6.332630 AGCATAAATTCAAAGACCATTTCCG 58.667 36.000 0.00 0.00 0.00 4.30
3283 4755 4.056050 CGATACTTATTTTGGGACGGAGG 58.944 47.826 0.00 0.00 0.00 4.30
3285 4757 3.133362 AGCGATACTTATTTTGGGACGGA 59.867 43.478 0.00 0.00 0.00 4.69
3286 4758 3.247648 CAGCGATACTTATTTTGGGACGG 59.752 47.826 0.00 0.00 0.00 4.79
3287 4759 4.116961 TCAGCGATACTTATTTTGGGACG 58.883 43.478 0.00 0.00 0.00 4.79
3288 4760 6.619801 ATTCAGCGATACTTATTTTGGGAC 57.380 37.500 0.00 0.00 0.00 4.46
3290 4762 7.220683 CACAAATTCAGCGATACTTATTTTGGG 59.779 37.037 0.00 0.00 31.59 4.12
3291 4763 7.754924 ACACAAATTCAGCGATACTTATTTTGG 59.245 33.333 0.00 0.00 31.59 3.28
3292 4764 8.673626 ACACAAATTCAGCGATACTTATTTTG 57.326 30.769 0.00 0.00 32.72 2.44
3295 4767 9.988350 CTTTACACAAATTCAGCGATACTTATT 57.012 29.630 0.00 0.00 0.00 1.40
3296 4768 9.162764 ACTTTACACAAATTCAGCGATACTTAT 57.837 29.630 0.00 0.00 0.00 1.73
3297 4769 8.542497 ACTTTACACAAATTCAGCGATACTTA 57.458 30.769 0.00 0.00 0.00 2.24
3298 4770 7.435068 ACTTTACACAAATTCAGCGATACTT 57.565 32.000 0.00 0.00 0.00 2.24
3299 4771 7.435068 AACTTTACACAAATTCAGCGATACT 57.565 32.000 0.00 0.00 0.00 2.12
3300 4772 9.769093 ATTAACTTTACACAAATTCAGCGATAC 57.231 29.630 0.00 0.00 0.00 2.24
3302 4774 9.769093 GTATTAACTTTACACAAATTCAGCGAT 57.231 29.630 0.00 0.00 0.00 4.58
3303 4775 8.775527 TGTATTAACTTTACACAAATTCAGCGA 58.224 29.630 0.00 0.00 0.00 4.93
3304 4776 8.942669 TGTATTAACTTTACACAAATTCAGCG 57.057 30.769 0.00 0.00 0.00 5.18
3323 4795 9.642327 TCGCTGATTTAGTACAAAGTTGTATTA 57.358 29.630 7.14 4.99 44.59 0.98
3324 4796 8.440833 GTCGCTGATTTAGTACAAAGTTGTATT 58.559 33.333 7.14 5.91 44.59 1.89
3325 4797 7.601130 TGTCGCTGATTTAGTACAAAGTTGTAT 59.399 33.333 7.14 0.74 44.59 2.29
3326 4798 6.924612 TGTCGCTGATTTAGTACAAAGTTGTA 59.075 34.615 0.00 0.00 42.35 2.41
3327 4799 5.756347 TGTCGCTGATTTAGTACAAAGTTGT 59.244 36.000 1.75 1.75 44.86 3.32
3328 4800 6.071463 GTGTCGCTGATTTAGTACAAAGTTG 58.929 40.000 0.00 0.00 0.00 3.16
3329 4801 5.989777 AGTGTCGCTGATTTAGTACAAAGTT 59.010 36.000 0.00 0.00 0.00 2.66
3330 4802 5.539048 AGTGTCGCTGATTTAGTACAAAGT 58.461 37.500 0.00 0.00 0.00 2.66
3331 4803 6.467723 AAGTGTCGCTGATTTAGTACAAAG 57.532 37.500 0.00 0.00 0.00 2.77
3332 4804 8.440059 CAATAAGTGTCGCTGATTTAGTACAAA 58.560 33.333 0.00 0.00 0.00 2.83
3333 4805 7.601130 ACAATAAGTGTCGCTGATTTAGTACAA 59.399 33.333 0.00 0.00 34.38 2.41
3334 4806 7.094631 ACAATAAGTGTCGCTGATTTAGTACA 58.905 34.615 0.00 0.00 34.38 2.90
3335 4807 7.521509 ACAATAAGTGTCGCTGATTTAGTAC 57.478 36.000 0.00 0.00 34.38 2.73
3336 4808 8.464404 AGTACAATAAGTGTCGCTGATTTAGTA 58.536 33.333 0.00 0.00 41.98 1.82
3337 4809 7.321153 AGTACAATAAGTGTCGCTGATTTAGT 58.679 34.615 0.00 0.00 41.98 2.24
3338 4810 7.757097 AGTACAATAAGTGTCGCTGATTTAG 57.243 36.000 0.00 0.00 41.98 1.85
3339 4811 9.079833 GTTAGTACAATAAGTGTCGCTGATTTA 57.920 33.333 0.00 0.00 41.98 1.40
3340 4812 7.817962 AGTTAGTACAATAAGTGTCGCTGATTT 59.182 33.333 0.00 0.00 41.98 2.17
3341 4813 7.321153 AGTTAGTACAATAAGTGTCGCTGATT 58.679 34.615 0.00 0.00 41.98 2.57
3342 4814 6.864342 AGTTAGTACAATAAGTGTCGCTGAT 58.136 36.000 0.00 0.00 41.98 2.90
3343 4815 6.263516 AGTTAGTACAATAAGTGTCGCTGA 57.736 37.500 0.00 0.00 41.98 4.26
3344 4816 6.946229 AAGTTAGTACAATAAGTGTCGCTG 57.054 37.500 0.00 0.00 41.98 5.18
3345 4817 6.927381 ACAAAGTTAGTACAATAAGTGTCGCT 59.073 34.615 0.00 0.00 41.98 4.93
3346 4818 7.113704 ACAAAGTTAGTACAATAAGTGTCGC 57.886 36.000 0.00 0.00 41.98 5.19
3347 4819 9.403110 AGTACAAAGTTAGTACAATAAGTGTCG 57.597 33.333 6.30 0.00 43.24 4.35
3356 4828 8.918658 CGCTGATTTAGTACAAAGTTAGTACAA 58.081 33.333 6.30 0.00 43.24 2.41
3357 4829 8.298854 TCGCTGATTTAGTACAAAGTTAGTACA 58.701 33.333 6.30 0.00 43.24 2.90
3358 4830 8.582096 GTCGCTGATTTAGTACAAAGTTAGTAC 58.418 37.037 0.00 0.00 41.59 2.73
3359 4831 8.298854 TGTCGCTGATTTAGTACAAAGTTAGTA 58.701 33.333 0.00 0.00 0.00 1.82
3360 4832 7.115947 GTGTCGCTGATTTAGTACAAAGTTAGT 59.884 37.037 0.00 0.00 0.00 2.24
3361 4833 7.328737 AGTGTCGCTGATTTAGTACAAAGTTAG 59.671 37.037 0.00 0.00 0.00 2.34
3362 4834 7.149973 AGTGTCGCTGATTTAGTACAAAGTTA 58.850 34.615 0.00 0.00 0.00 2.24
3363 4835 5.989777 AGTGTCGCTGATTTAGTACAAAGTT 59.010 36.000 0.00 0.00 0.00 2.66
3364 4836 5.539048 AGTGTCGCTGATTTAGTACAAAGT 58.461 37.500 0.00 0.00 0.00 2.66
3365 4837 6.467723 AAGTGTCGCTGATTTAGTACAAAG 57.532 37.500 0.00 0.00 0.00 2.77
3366 4838 8.542497 AATAAGTGTCGCTGATTTAGTACAAA 57.458 30.769 0.00 0.00 0.00 2.83
3367 4839 8.542497 AAATAAGTGTCGCTGATTTAGTACAA 57.458 30.769 6.91 0.00 36.68 2.41
3368 4840 8.440059 CAAAATAAGTGTCGCTGATTTAGTACA 58.560 33.333 8.84 0.00 37.29 2.90
3369 4841 7.903431 CCAAAATAAGTGTCGCTGATTTAGTAC 59.097 37.037 8.84 0.00 37.29 2.73
3370 4842 7.065324 CCCAAAATAAGTGTCGCTGATTTAGTA 59.935 37.037 8.84 0.00 37.29 1.82
3371 4843 6.128007 CCCAAAATAAGTGTCGCTGATTTAGT 60.128 38.462 8.84 0.00 37.29 2.24
3372 4844 6.093495 TCCCAAAATAAGTGTCGCTGATTTAG 59.907 38.462 8.84 4.74 37.29 1.85
3373 4845 5.941058 TCCCAAAATAAGTGTCGCTGATTTA 59.059 36.000 8.84 0.00 37.29 1.40
3374 4846 4.764823 TCCCAAAATAAGTGTCGCTGATTT 59.235 37.500 3.21 3.21 39.41 2.17
3375 4847 4.156008 GTCCCAAAATAAGTGTCGCTGATT 59.844 41.667 0.00 0.00 29.37 2.57
3376 4848 3.689649 GTCCCAAAATAAGTGTCGCTGAT 59.310 43.478 0.00 0.00 0.00 2.90
3377 4849 3.071479 GTCCCAAAATAAGTGTCGCTGA 58.929 45.455 0.00 0.00 0.00 4.26
3378 4850 2.811431 TGTCCCAAAATAAGTGTCGCTG 59.189 45.455 0.00 0.00 0.00 5.18
3379 4851 3.074412 CTGTCCCAAAATAAGTGTCGCT 58.926 45.455 0.00 0.00 0.00 4.93
3380 4852 3.071479 TCTGTCCCAAAATAAGTGTCGC 58.929 45.455 0.00 0.00 0.00 5.19
3381 4853 3.684788 CCTCTGTCCCAAAATAAGTGTCG 59.315 47.826 0.00 0.00 0.00 4.35
3382 4854 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
3383 4855 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
3440 4917 8.409358 ACCAAGCAAAACTAATTAGAACTCAT 57.591 30.769 19.38 0.00 0.00 2.90
3534 6179 7.397892 TCAAACCTGTAATTCAAAGACACAA 57.602 32.000 0.00 0.00 0.00 3.33
3538 6183 7.591426 GTGTCATCAAACCTGTAATTCAAAGAC 59.409 37.037 0.00 0.00 0.00 3.01
3883 6569 8.765219 TCTTCAAATAACTTCAAAGACTCTTCG 58.235 33.333 0.00 0.00 0.00 3.79
3893 6579 6.370593 GTCGCATGTCTTCAAATAACTTCAA 58.629 36.000 0.00 0.00 0.00 2.69
3919 6605 0.523072 CACCTTCAGCAATCAACCCG 59.477 55.000 0.00 0.00 0.00 5.28
3934 6620 1.758440 TTCGGAGAGTTGCTGCACCT 61.758 55.000 0.00 0.00 38.43 4.00
4067 6753 7.062605 GGCATCAAAGATTGAGTTTTGTATGTG 59.937 37.037 0.00 0.00 43.98 3.21
4208 6898 4.574013 CGAGGCAGAGCTATTTCAAGAAAT 59.426 41.667 12.21 12.21 42.95 2.17
4556 7261 1.186200 TCGCAGTTGCTGATACTCCT 58.814 50.000 2.29 0.00 39.32 3.69
4628 7334 5.181690 TCATGTGAGCCTTTGTTAACAAC 57.818 39.130 20.43 9.66 35.28 3.32
4707 7429 5.982356 TCACTGCATATAGAAAGAAGTGCT 58.018 37.500 0.00 0.00 34.85 4.40
4731 7456 6.101332 ACGGTCAACACGAATTAAGCTATTA 58.899 36.000 0.00 0.00 34.93 0.98
4822 7555 3.634910 GGAACTGAGTGCCAAACCTTTAA 59.365 43.478 4.25 0.00 29.85 1.52
4839 7572 2.283145 AGTGAATTGCAGCAGGAACT 57.717 45.000 0.00 0.00 43.88 3.01
4867 7600 6.262496 GTGTGTTAGGAACTTCTAAAGGCTTT 59.738 38.462 17.76 17.76 41.75 3.51
4868 7601 5.763698 GTGTGTTAGGAACTTCTAAAGGCTT 59.236 40.000 0.00 0.00 41.75 4.35
5089 7880 9.834628 CATGGACACAAAGTAAAACGTATAAAT 57.165 29.630 0.00 0.00 0.00 1.40
5123 7916 9.262358 CCTGTAGAAAGGTAGCATATAAGAAAC 57.738 37.037 0.00 0.00 32.17 2.78
5143 7937 5.277828 CGGTTTTTGAGAAAGGAACCTGTAG 60.278 44.000 0.00 0.00 0.00 2.74
5274 8069 9.822185 ATTTTCAGCTCAACTTTCTTAACAAAT 57.178 25.926 0.00 0.00 0.00 2.32
5299 8094 9.476928 AGTAGGTGAAGTACAATAGTCAAGTAT 57.523 33.333 0.00 0.00 0.00 2.12
5505 8321 4.202223 TGTGTTTCAACTCCCTGAGTAGAC 60.202 45.833 0.00 0.00 42.59 2.59
5512 8328 2.097466 GTGTGTGTGTTTCAACTCCCTG 59.903 50.000 0.00 0.00 0.00 4.45
5523 8339 8.855110 TCCAGAATATATTTTTGTGTGTGTGTT 58.145 29.630 0.00 0.00 0.00 3.32
5539 8365 7.556275 GGAAACCAAGTCAACATCCAGAATATA 59.444 37.037 0.00 0.00 0.00 0.86
5675 8505 1.226686 ACAGCAAGAACAGCGAGCAG 61.227 55.000 0.00 0.00 37.01 4.24
5714 8551 5.757850 ACACAGAAAAGTGACTTTCCATC 57.242 39.130 11.44 5.63 42.05 3.51
5715 8552 6.772716 ACATACACAGAAAAGTGACTTTCCAT 59.227 34.615 11.44 0.00 42.05 3.41
5730 8567 3.324846 AGAGCAAGGAACACATACACAGA 59.675 43.478 0.00 0.00 0.00 3.41
5731 8568 3.668447 AGAGCAAGGAACACATACACAG 58.332 45.455 0.00 0.00 0.00 3.66
5744 8581 3.465871 GCAGGATTCTAAGAGAGCAAGG 58.534 50.000 0.00 0.00 0.00 3.61
5778 8636 1.377202 GTTCAGATCGCCCAGCCAA 60.377 57.895 0.00 0.00 0.00 4.52
5793 8651 1.014564 CCTCTTTCGAGTGCGGGTTC 61.015 60.000 0.00 0.00 38.28 3.62
5850 8708 1.597854 CTTGTCGCCCAGAACTGCA 60.598 57.895 0.00 0.00 0.00 4.41
5916 8786 0.108615 CAAGCGACGGAGAGGAATGT 60.109 55.000 0.00 0.00 0.00 2.71
5938 8814 1.686587 TCAAGAAGAGCGGTCAGTTGA 59.313 47.619 18.15 17.59 0.00 3.18
6156 9051 1.063266 ACAAAAAGGGCCTCTTGGACA 60.063 47.619 24.41 0.00 45.45 4.02
6158 9053 2.470057 AACAAAAAGGGCCTCTTGGA 57.530 45.000 24.41 0.00 35.55 3.53
6220 9121 8.071122 TCCAAATTTTGATCGATTGAAACAAC 57.929 30.769 10.72 0.00 0.00 3.32
6257 9158 5.220931 GCAGGTAATCTGAGCAACTATTTGG 60.221 44.000 0.00 0.00 46.18 3.28
6267 9168 0.811616 CACGGGCAGGTAATCTGAGC 60.812 60.000 0.00 0.00 46.18 4.26
6293 9194 3.428589 GCTCCGGCTAAGGTATATTACCG 60.429 52.174 0.00 0.00 43.63 4.02
6338 9240 0.613777 CTGGTTTCTTAGAGGGCGGT 59.386 55.000 0.00 0.00 0.00 5.68
6381 9287 4.535116 GCAAGAGAAGTGCTTTTCAGAAG 58.465 43.478 5.47 0.00 39.00 2.85
6382 9288 4.558538 GCAAGAGAAGTGCTTTTCAGAA 57.441 40.909 5.47 0.00 39.00 3.02
6391 9297 3.111098 CACAAAACAGCAAGAGAAGTGC 58.889 45.455 0.00 0.00 42.55 4.40
6392 9298 4.361451 ACACAAAACAGCAAGAGAAGTG 57.639 40.909 0.00 0.00 0.00 3.16
6393 9299 5.391312 AAACACAAAACAGCAAGAGAAGT 57.609 34.783 0.00 0.00 0.00 3.01
6394 9300 6.095377 AGAAAACACAAAACAGCAAGAGAAG 58.905 36.000 0.00 0.00 0.00 2.85
6395 9301 6.024552 AGAAAACACAAAACAGCAAGAGAA 57.975 33.333 0.00 0.00 0.00 2.87
6396 9302 5.643379 AGAAAACACAAAACAGCAAGAGA 57.357 34.783 0.00 0.00 0.00 3.10
6397 9303 5.003778 CGAAGAAAACACAAAACAGCAAGAG 59.996 40.000 0.00 0.00 0.00 2.85
6398 9304 4.856487 CGAAGAAAACACAAAACAGCAAGA 59.144 37.500 0.00 0.00 0.00 3.02
6399 9305 4.031652 CCGAAGAAAACACAAAACAGCAAG 59.968 41.667 0.00 0.00 0.00 4.01
6400 9306 3.923461 CCGAAGAAAACACAAAACAGCAA 59.077 39.130 0.00 0.00 0.00 3.91
6401 9307 3.057174 ACCGAAGAAAACACAAAACAGCA 60.057 39.130 0.00 0.00 0.00 4.41
6402 9308 3.507786 ACCGAAGAAAACACAAAACAGC 58.492 40.909 0.00 0.00 0.00 4.40
6403 9309 6.970043 TGAATACCGAAGAAAACACAAAACAG 59.030 34.615 0.00 0.00 0.00 3.16
6409 9315 6.017770 ACGAAATGAATACCGAAGAAAACACA 60.018 34.615 0.00 0.00 0.00 3.72
6432 9338 1.691976 TGGTGGGGCAATATAGAGACG 59.308 52.381 0.00 0.00 0.00 4.18
6433 9339 2.438021 TGTGGTGGGGCAATATAGAGAC 59.562 50.000 0.00 0.00 0.00 3.36
6435 9341 3.214328 GTTGTGGTGGGGCAATATAGAG 58.786 50.000 0.00 0.00 0.00 2.43
6439 9345 1.203112 TGTGTTGTGGTGGGGCAATAT 60.203 47.619 0.00 0.00 0.00 1.28
6458 9364 9.297586 GCTGAATAAATGCATGAATATACCATG 57.702 33.333 0.00 11.59 43.06 3.66
6459 9365 8.186163 CGCTGAATAAATGCATGAATATACCAT 58.814 33.333 0.00 0.00 0.00 3.55
6460 9366 7.174772 ACGCTGAATAAATGCATGAATATACCA 59.825 33.333 0.00 2.08 0.00 3.25
6461 9367 7.482743 CACGCTGAATAAATGCATGAATATACC 59.517 37.037 0.00 0.00 0.00 2.73
6463 9369 8.098220 ACACGCTGAATAAATGCATGAATATA 57.902 30.769 0.00 0.00 0.00 0.86
6519 9943 5.047092 CCCAAAAATATATGCCCATGTCTCC 60.047 44.000 0.00 0.00 0.00 3.71
6521 9945 4.840115 CCCCAAAAATATATGCCCATGTCT 59.160 41.667 0.00 0.00 0.00 3.41
6562 9989 6.742109 TCTAGGCGCTCTTAAAAATATACGT 58.258 36.000 7.64 0.00 0.00 3.57
6563 9990 7.813852 ATCTAGGCGCTCTTAAAAATATACG 57.186 36.000 7.64 0.00 0.00 3.06
6564 9991 8.657729 GGAATCTAGGCGCTCTTAAAAATATAC 58.342 37.037 7.64 0.00 0.00 1.47
6565 9992 8.372459 TGGAATCTAGGCGCTCTTAAAAATATA 58.628 33.333 7.64 0.00 0.00 0.86
6566 9993 7.224297 TGGAATCTAGGCGCTCTTAAAAATAT 58.776 34.615 7.64 0.00 0.00 1.28
6567 9994 6.588204 TGGAATCTAGGCGCTCTTAAAAATA 58.412 36.000 7.64 0.00 0.00 1.40
6570 9997 4.481368 TGGAATCTAGGCGCTCTTAAAA 57.519 40.909 7.64 0.00 0.00 1.52
6627 10056 3.753272 AGTACAAAGGTCATGTGATGCAC 59.247 43.478 0.00 0.00 34.56 4.57
6697 10126 5.753744 CAAAGGAAAACGTTGTAGCACATA 58.246 37.500 0.00 0.00 34.43 2.29
6744 10189 6.291637 CGATGGTATAGTTGCACTTAGAAACG 60.292 42.308 0.00 0.00 0.00 3.60
6802 10512 5.484715 ACGAAAATCGGTAATGGAAGAGAA 58.515 37.500 4.66 0.00 45.59 2.87
6819 10531 2.297880 TCGGAGATGGTCTTGACGAAAA 59.702 45.455 0.00 0.00 29.38 2.29
6863 10851 2.234661 AGCTTTTTATCTTGGGCAAGGC 59.765 45.455 0.00 0.00 38.88 4.35
6865 10853 3.056322 AGCAGCTTTTTATCTTGGGCAAG 60.056 43.478 0.00 0.00 39.71 4.01
6909 10897 2.032681 GGGCTTGGAGCACTCGTT 59.967 61.111 2.04 0.00 42.59 3.85
6910 10898 4.379243 CGGGCTTGGAGCACTCGT 62.379 66.667 0.27 0.00 44.04 4.18
6933 10921 8.042515 ACAGTTTAGTAGGTTCACAAACAACTA 58.957 33.333 0.00 0.00 37.10 2.24
6936 10924 6.094325 CCACAGTTTAGTAGGTTCACAAACAA 59.906 38.462 0.00 0.00 37.10 2.83
6945 10933 4.172807 TGGATCCCACAGTTTAGTAGGTT 58.827 43.478 9.90 0.00 0.00 3.50
6950 10938 4.104102 TGTCTTTGGATCCCACAGTTTAGT 59.896 41.667 9.90 0.00 33.46 2.24
6958 10946 3.420893 TGACAATGTCTTTGGATCCCAC 58.579 45.455 14.97 1.23 39.80 4.61
6978 10966 6.131544 TGATCACAAGCATCATCATCTTTG 57.868 37.500 0.00 0.00 0.00 2.77
6979 10967 6.546034 TCATGATCACAAGCATCATCATCTTT 59.454 34.615 0.00 0.00 38.67 2.52
6983 10971 5.592688 TGTTCATGATCACAAGCATCATCAT 59.407 36.000 0.00 0.00 38.67 2.45
6990 10978 7.576861 ATCATATTGTTCATGATCACAAGCA 57.423 32.000 16.01 8.68 38.47 3.91
7004 10992 6.066690 CCTCATCCTCCACAATCATATTGTT 58.933 40.000 2.59 0.00 0.00 2.83
7009 10997 3.392285 CACCCTCATCCTCCACAATCATA 59.608 47.826 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.