Multiple sequence alignment - TraesCS3B01G132200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G132200 chr3B 100.000 3587 0 0 1 3587 114727536 114723950 0.000000e+00 6625.0
1 TraesCS3B01G132200 chr3B 91.549 71 5 1 3093 3163 670541060 670541129 2.950000e-16 97.1
2 TraesCS3B01G132200 chr3A 93.032 2282 141 9 629 2897 79234751 79237027 0.000000e+00 3317.0
3 TraesCS3B01G132200 chr3A 83.690 1447 195 24 1584 3020 79265266 79266681 0.000000e+00 1327.0
4 TraesCS3B01G132200 chr3A 81.407 1393 195 32 1640 3012 79295033 79296381 0.000000e+00 1079.0
5 TraesCS3B01G132200 chr3A 84.440 1009 138 14 1353 2352 79270406 79271404 0.000000e+00 976.0
6 TraesCS3B01G132200 chr3A 84.253 997 142 8 1535 2517 79296766 79297761 0.000000e+00 957.0
7 TraesCS3B01G132200 chr3A 87.607 702 61 15 2892 3582 79238809 79239495 0.000000e+00 791.0
8 TraesCS3B01G132200 chr3A 84.836 244 34 2 2346 2587 79294741 79294983 3.580000e-60 243.0
9 TraesCS3B01G132200 chr3A 84.906 212 18 9 68 267 79192680 79192889 6.070000e-48 202.0
10 TraesCS3B01G132200 chr3D 91.939 2357 117 34 540 2856 67632195 67629872 0.000000e+00 3232.0
11 TraesCS3B01G132200 chr3D 86.432 398 36 15 351 739 67650081 67649693 1.540000e-113 420.0
12 TraesCS3B01G132200 chr4B 73.939 1485 306 62 1115 2574 667426685 667428113 1.140000e-144 523.0
13 TraesCS3B01G132200 chr4B 77.545 668 129 16 1065 1726 110228815 110229467 2.020000e-102 383.0
14 TraesCS3B01G132200 chr4B 73.608 413 69 24 7 384 60635115 60635522 4.860000e-24 122.0
15 TraesCS3B01G132200 chrUn 73.702 1483 312 60 1115 2573 30095214 30096642 1.150000e-139 507.0
16 TraesCS3B01G132200 chr7A 73.374 1461 312 62 1125 2563 518571443 518570038 4.190000e-129 472.0
17 TraesCS3B01G132200 chr7A 77.554 695 128 23 1076 1762 580225051 580225725 9.330000e-106 394.0
18 TraesCS3B01G132200 chr7A 77.778 342 64 10 2237 2575 81549459 81549791 2.180000e-47 200.0
19 TraesCS3B01G132200 chr7A 75.367 341 68 13 2237 2572 518504447 518504118 2.230000e-32 150.0
20 TraesCS3B01G132200 chr7B 79.403 704 116 20 1065 1758 502733993 502734677 1.510000e-128 470.0
21 TraesCS3B01G132200 chr2B 78.352 716 131 19 1067 1767 762118295 762117589 3.290000e-120 442.0
22 TraesCS3B01G132200 chr7D 72.950 1427 313 59 1157 2563 477659382 477660755 2.560000e-116 429.0
23 TraesCS3B01G132200 chr4D 78.378 666 127 13 1065 1726 78779689 78780341 1.990000e-112 416.0
24 TraesCS3B01G132200 chr4D 76.724 348 58 16 2237 2574 503607583 503607917 4.760000e-39 172.0
25 TraesCS3B01G132200 chr6B 76.754 499 72 21 7 466 198404987 198404494 4.630000e-59 239.0
26 TraesCS3B01G132200 chr5A 76.033 484 67 24 8 452 456977800 456977327 4.690000e-49 206.0
27 TraesCS3B01G132200 chr5A 78.144 334 66 7 2237 2568 475296028 475296356 4.690000e-49 206.0
28 TraesCS3B01G132200 chr5A 76.440 191 33 6 89 269 400485645 400485833 3.810000e-15 93.5
29 TraesCS3B01G132200 chr5A 82.895 76 12 1 310 384 17829030 17828955 2.310000e-07 67.6
30 TraesCS3B01G132200 chr5A 85.455 55 4 3 77 129 679123955 679124007 2.000000e-03 54.7
31 TraesCS3B01G132200 chr5D 75.216 464 67 18 8 437 354840756 354840307 3.680000e-40 176.0
32 TraesCS3B01G132200 chr5D 77.632 152 31 2 7 155 464285099 464285250 4.930000e-14 89.8
33 TraesCS3B01G132200 chr5D 84.211 76 11 1 310 384 25312860 25312935 4.970000e-09 73.1
34 TraesCS3B01G132200 chr1B 74.182 275 56 11 7 269 545076591 545076320 2.280000e-17 100.0
35 TraesCS3B01G132200 chr2A 94.737 38 2 0 97 134 758529587 758529624 3.870000e-05 60.2
36 TraesCS3B01G132200 chr5B 100.000 30 0 0 355 384 17969991 17969962 5.000000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G132200 chr3B 114723950 114727536 3586 True 6625.000000 6625 100.000000 1 3587 1 chr3B.!!$R1 3586
1 TraesCS3B01G132200 chr3A 79234751 79239495 4744 False 2054.000000 3317 90.319500 629 3582 2 chr3A.!!$F2 2953
2 TraesCS3B01G132200 chr3A 79265266 79271404 6138 False 1151.500000 1327 84.065000 1353 3020 2 chr3A.!!$F3 1667
3 TraesCS3B01G132200 chr3A 79294741 79297761 3020 False 759.666667 1079 83.498667 1535 3012 3 chr3A.!!$F4 1477
4 TraesCS3B01G132200 chr3D 67629872 67632195 2323 True 3232.000000 3232 91.939000 540 2856 1 chr3D.!!$R1 2316
5 TraesCS3B01G132200 chr4B 667426685 667428113 1428 False 523.000000 523 73.939000 1115 2574 1 chr4B.!!$F3 1459
6 TraesCS3B01G132200 chr4B 110228815 110229467 652 False 383.000000 383 77.545000 1065 1726 1 chr4B.!!$F2 661
7 TraesCS3B01G132200 chrUn 30095214 30096642 1428 False 507.000000 507 73.702000 1115 2573 1 chrUn.!!$F1 1458
8 TraesCS3B01G132200 chr7A 518570038 518571443 1405 True 472.000000 472 73.374000 1125 2563 1 chr7A.!!$R2 1438
9 TraesCS3B01G132200 chr7A 580225051 580225725 674 False 394.000000 394 77.554000 1076 1762 1 chr7A.!!$F2 686
10 TraesCS3B01G132200 chr7B 502733993 502734677 684 False 470.000000 470 79.403000 1065 1758 1 chr7B.!!$F1 693
11 TraesCS3B01G132200 chr2B 762117589 762118295 706 True 442.000000 442 78.352000 1067 1767 1 chr2B.!!$R1 700
12 TraesCS3B01G132200 chr7D 477659382 477660755 1373 False 429.000000 429 72.950000 1157 2563 1 chr7D.!!$F1 1406
13 TraesCS3B01G132200 chr4D 78779689 78780341 652 False 416.000000 416 78.378000 1065 1726 1 chr4D.!!$F1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 625 0.034896 TCGCTCCTCTTCCCACAAAC 59.965 55.0 0.00 0.0 0.0 2.93 F
2364 2638 0.400213 ACGGGTTCATGGAGCAGAAA 59.600 50.0 10.48 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2568 2842 0.394899 CCTAGACGGGTAGGAACGGT 60.395 60.0 6.51 0.0 42.18 4.83 R
3545 9962 0.319297 CATGCCGCAGATCGATGAGA 60.319 55.0 0.54 0.0 41.67 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.081840 GCAAACGAGTGCTCCAAGC 60.082 57.895 7.66 0.00 41.51 4.01
19 20 1.576421 CAAACGAGTGCTCCAAGCC 59.424 57.895 0.00 0.00 41.51 4.35
20 21 1.600916 AAACGAGTGCTCCAAGCCC 60.601 57.895 0.00 0.00 41.51 5.19
21 22 3.883744 AACGAGTGCTCCAAGCCCG 62.884 63.158 0.00 0.94 41.51 6.13
22 23 4.379243 CGAGTGCTCCAAGCCCGT 62.379 66.667 0.00 0.00 41.51 5.28
23 24 2.032681 GAGTGCTCCAAGCCCGTT 59.967 61.111 0.00 0.00 41.51 4.44
24 25 1.600916 GAGTGCTCCAAGCCCGTTT 60.601 57.895 0.00 0.00 41.51 3.60
25 26 1.152756 AGTGCTCCAAGCCCGTTTT 60.153 52.632 0.00 0.00 41.51 2.43
26 27 1.007387 GTGCTCCAAGCCCGTTTTG 60.007 57.895 0.00 0.00 41.51 2.44
27 28 1.454847 TGCTCCAAGCCCGTTTTGT 60.455 52.632 0.00 0.00 41.51 2.83
28 29 0.179015 TGCTCCAAGCCCGTTTTGTA 60.179 50.000 0.00 0.00 41.51 2.41
29 30 0.521735 GCTCCAAGCCCGTTTTGTAG 59.478 55.000 0.00 0.00 34.48 2.74
30 31 1.892209 CTCCAAGCCCGTTTTGTAGT 58.108 50.000 0.00 0.00 0.00 2.73
31 32 2.227194 CTCCAAGCCCGTTTTGTAGTT 58.773 47.619 0.00 0.00 0.00 2.24
32 33 1.950909 TCCAAGCCCGTTTTGTAGTTG 59.049 47.619 0.00 0.00 0.00 3.16
33 34 1.679153 CCAAGCCCGTTTTGTAGTTGT 59.321 47.619 0.00 0.00 0.00 3.32
34 35 2.100087 CCAAGCCCGTTTTGTAGTTGTT 59.900 45.455 0.00 0.00 0.00 2.83
35 36 3.429684 CCAAGCCCGTTTTGTAGTTGTTT 60.430 43.478 0.00 0.00 0.00 2.83
36 37 3.430333 AGCCCGTTTTGTAGTTGTTTG 57.570 42.857 0.00 0.00 0.00 2.93
37 38 2.756207 AGCCCGTTTTGTAGTTGTTTGT 59.244 40.909 0.00 0.00 0.00 2.83
38 39 2.855370 GCCCGTTTTGTAGTTGTTTGTG 59.145 45.455 0.00 0.00 0.00 3.33
39 40 3.427773 GCCCGTTTTGTAGTTGTTTGTGA 60.428 43.478 0.00 0.00 0.00 3.58
40 41 4.734917 CCCGTTTTGTAGTTGTTTGTGAA 58.265 39.130 0.00 0.00 0.00 3.18
41 42 4.559643 CCCGTTTTGTAGTTGTTTGTGAAC 59.440 41.667 0.00 0.00 36.29 3.18
42 43 4.559643 CCGTTTTGTAGTTGTTTGTGAACC 59.440 41.667 0.00 0.00 34.80 3.62
43 44 5.395642 CGTTTTGTAGTTGTTTGTGAACCT 58.604 37.500 0.00 0.00 34.80 3.50
44 45 6.403418 CCGTTTTGTAGTTGTTTGTGAACCTA 60.403 38.462 0.00 0.00 34.80 3.08
45 46 6.466730 CGTTTTGTAGTTGTTTGTGAACCTAC 59.533 38.462 0.00 0.00 34.13 3.18
46 47 7.532571 GTTTTGTAGTTGTTTGTGAACCTACT 58.467 34.615 0.00 0.00 34.40 2.57
47 48 8.667463 GTTTTGTAGTTGTTTGTGAACCTACTA 58.333 33.333 0.00 0.00 34.40 1.82
48 49 8.789825 TTTGTAGTTGTTTGTGAACCTACTAA 57.210 30.769 0.00 0.00 35.50 2.24
49 50 8.789825 TTGTAGTTGTTTGTGAACCTACTAAA 57.210 30.769 0.00 0.00 35.50 1.85
50 51 8.200364 TGTAGTTGTTTGTGAACCTACTAAAC 57.800 34.615 0.00 0.00 35.50 2.01
51 52 8.042515 TGTAGTTGTTTGTGAACCTACTAAACT 58.957 33.333 0.00 0.00 35.50 2.66
52 53 7.316544 AGTTGTTTGTGAACCTACTAAACTG 57.683 36.000 0.00 0.00 34.80 3.16
53 54 6.882678 AGTTGTTTGTGAACCTACTAAACTGT 59.117 34.615 0.00 0.00 34.80 3.55
54 55 6.671614 TGTTTGTGAACCTACTAAACTGTG 57.328 37.500 0.00 0.00 34.80 3.66
55 56 5.587043 TGTTTGTGAACCTACTAAACTGTGG 59.413 40.000 0.00 0.00 34.80 4.17
56 57 4.345859 TGTGAACCTACTAAACTGTGGG 57.654 45.455 0.00 0.00 43.15 4.61
57 58 3.968649 TGTGAACCTACTAAACTGTGGGA 59.031 43.478 4.12 0.00 40.47 4.37
58 59 4.595781 TGTGAACCTACTAAACTGTGGGAT 59.404 41.667 4.12 0.00 40.47 3.85
59 60 5.176592 GTGAACCTACTAAACTGTGGGATC 58.823 45.833 4.12 2.72 40.47 3.36
60 61 4.224370 TGAACCTACTAAACTGTGGGATCC 59.776 45.833 1.92 1.92 40.47 3.36
61 62 3.798515 ACCTACTAAACTGTGGGATCCA 58.201 45.455 15.23 0.00 40.47 3.41
62 63 4.172807 ACCTACTAAACTGTGGGATCCAA 58.827 43.478 15.23 0.00 40.47 3.53
63 64 4.600111 ACCTACTAAACTGTGGGATCCAAA 59.400 41.667 15.23 0.00 40.47 3.28
64 65 5.186198 CCTACTAAACTGTGGGATCCAAAG 58.814 45.833 15.23 9.92 44.14 2.77
65 66 4.993705 ACTAAACTGTGGGATCCAAAGA 57.006 40.909 15.23 0.00 41.22 2.52
66 67 4.652822 ACTAAACTGTGGGATCCAAAGAC 58.347 43.478 15.23 4.84 41.22 3.01
67 68 3.593442 AAACTGTGGGATCCAAAGACA 57.407 42.857 15.23 9.27 41.22 3.41
68 69 3.814504 AACTGTGGGATCCAAAGACAT 57.185 42.857 15.23 0.00 41.22 3.06
69 70 3.814504 ACTGTGGGATCCAAAGACATT 57.185 42.857 15.23 2.09 41.22 2.71
70 71 3.424703 ACTGTGGGATCCAAAGACATTG 58.575 45.455 15.23 2.72 41.22 2.82
71 72 3.181429 ACTGTGGGATCCAAAGACATTGT 60.181 43.478 15.23 3.30 41.22 2.71
72 73 3.420893 TGTGGGATCCAAAGACATTGTC 58.579 45.455 15.23 8.82 37.32 3.18
73 74 3.181435 TGTGGGATCCAAAGACATTGTCA 60.181 43.478 18.57 0.00 37.32 3.58
74 75 3.826157 GTGGGATCCAAAGACATTGTCAA 59.174 43.478 18.57 0.00 37.32 3.18
75 76 4.280677 GTGGGATCCAAAGACATTGTCAAA 59.719 41.667 18.57 0.14 37.32 2.69
76 77 4.523943 TGGGATCCAAAGACATTGTCAAAG 59.476 41.667 18.57 7.36 37.32 2.77
77 78 4.766891 GGGATCCAAAGACATTGTCAAAGA 59.233 41.667 18.57 9.77 37.32 2.52
78 79 5.420104 GGGATCCAAAGACATTGTCAAAGAT 59.580 40.000 18.57 13.55 37.32 2.40
79 80 6.327934 GGATCCAAAGACATTGTCAAAGATG 58.672 40.000 18.57 9.22 37.32 2.90
80 81 6.151648 GGATCCAAAGACATTGTCAAAGATGA 59.848 38.462 18.57 7.66 37.32 2.92
81 82 7.147949 GGATCCAAAGACATTGTCAAAGATGAT 60.148 37.037 18.57 11.49 38.01 2.45
82 83 6.916440 TCCAAAGACATTGTCAAAGATGATG 58.084 36.000 18.57 5.66 38.01 3.07
83 84 6.716173 TCCAAAGACATTGTCAAAGATGATGA 59.284 34.615 18.57 0.81 38.01 2.92
84 85 7.395206 TCCAAAGACATTGTCAAAGATGATGAT 59.605 33.333 18.57 0.00 38.01 2.45
85 86 7.488150 CCAAAGACATTGTCAAAGATGATGATG 59.512 37.037 18.57 0.19 38.01 3.07
86 87 6.132791 AGACATTGTCAAAGATGATGATGC 57.867 37.500 18.57 0.00 38.01 3.91
87 88 5.886474 AGACATTGTCAAAGATGATGATGCT 59.114 36.000 18.57 0.00 38.01 3.79
88 89 6.377429 AGACATTGTCAAAGATGATGATGCTT 59.623 34.615 18.57 0.00 38.01 3.91
89 90 6.330278 ACATTGTCAAAGATGATGATGCTTG 58.670 36.000 0.00 0.00 38.01 4.01
90 91 5.970317 TTGTCAAAGATGATGATGCTTGT 57.030 34.783 0.00 0.00 38.01 3.16
91 92 5.305139 TGTCAAAGATGATGATGCTTGTG 57.695 39.130 0.00 0.00 38.01 3.33
92 93 5.005094 TGTCAAAGATGATGATGCTTGTGA 58.995 37.500 0.00 0.00 38.01 3.58
93 94 5.650703 TGTCAAAGATGATGATGCTTGTGAT 59.349 36.000 0.00 0.00 38.01 3.06
94 95 6.183360 TGTCAAAGATGATGATGCTTGTGATC 60.183 38.462 0.00 0.00 38.01 2.92
95 96 5.883673 TCAAAGATGATGATGCTTGTGATCA 59.116 36.000 0.00 0.00 34.37 2.92
96 97 6.546034 TCAAAGATGATGATGCTTGTGATCAT 59.454 34.615 0.00 0.00 42.15 2.45
97 98 5.948992 AGATGATGATGCTTGTGATCATG 57.051 39.130 0.00 0.00 40.03 3.07
98 99 5.621193 AGATGATGATGCTTGTGATCATGA 58.379 37.500 0.00 0.00 40.03 3.07
99 100 6.062095 AGATGATGATGCTTGTGATCATGAA 58.938 36.000 0.00 0.00 40.03 2.57
100 101 5.494632 TGATGATGCTTGTGATCATGAAC 57.505 39.130 0.00 0.00 40.03 3.18
101 102 4.944930 TGATGATGCTTGTGATCATGAACA 59.055 37.500 0.00 0.00 40.03 3.18
102 103 5.416326 TGATGATGCTTGTGATCATGAACAA 59.584 36.000 7.30 9.74 40.03 2.83
103 104 5.907866 TGATGCTTGTGATCATGAACAAT 57.092 34.783 12.25 0.84 35.82 2.71
104 105 7.283580 TGATGATGCTTGTGATCATGAACAATA 59.716 33.333 12.25 6.62 40.03 1.90
105 106 7.576861 TGATGCTTGTGATCATGAACAATAT 57.423 32.000 12.25 10.21 35.82 1.28
106 107 7.422399 TGATGCTTGTGATCATGAACAATATG 58.578 34.615 12.25 6.69 35.82 1.78
107 108 7.283580 TGATGCTTGTGATCATGAACAATATGA 59.716 33.333 12.25 4.02 38.76 2.15
108 109 7.576861 TGCTTGTGATCATGAACAATATGAT 57.423 32.000 12.25 0.00 45.35 2.45
109 110 8.002984 TGCTTGTGATCATGAACAATATGATT 57.997 30.769 12.25 0.00 43.37 2.57
110 111 7.918562 TGCTTGTGATCATGAACAATATGATTG 59.081 33.333 12.25 2.46 43.37 2.67
111 112 7.919091 GCTTGTGATCATGAACAATATGATTGT 59.081 33.333 12.25 0.00 43.37 2.71
112 113 9.233232 CTTGTGATCATGAACAATATGATTGTG 57.767 33.333 12.25 0.00 43.37 3.33
113 114 7.708998 TGTGATCATGAACAATATGATTGTGG 58.291 34.615 7.30 0.00 43.37 4.17
114 115 7.556996 TGTGATCATGAACAATATGATTGTGGA 59.443 33.333 7.30 3.12 43.37 4.02
115 116 8.074370 GTGATCATGAACAATATGATTGTGGAG 58.926 37.037 7.30 0.00 43.37 3.86
116 117 6.947644 TCATGAACAATATGATTGTGGAGG 57.052 37.500 5.63 0.00 32.22 4.30
117 118 6.661777 TCATGAACAATATGATTGTGGAGGA 58.338 36.000 5.63 1.07 32.22 3.71
118 119 7.292319 TCATGAACAATATGATTGTGGAGGAT 58.708 34.615 5.63 0.00 32.22 3.24
119 120 6.947644 TGAACAATATGATTGTGGAGGATG 57.052 37.500 5.63 0.00 32.22 3.51
120 121 6.661777 TGAACAATATGATTGTGGAGGATGA 58.338 36.000 5.63 0.00 32.22 2.92
121 122 6.769341 TGAACAATATGATTGTGGAGGATGAG 59.231 38.462 5.63 0.00 32.22 2.90
122 123 5.628130 ACAATATGATTGTGGAGGATGAGG 58.372 41.667 4.08 0.00 0.00 3.86
123 124 4.923516 ATATGATTGTGGAGGATGAGGG 57.076 45.455 0.00 0.00 0.00 4.30
124 125 1.971149 TGATTGTGGAGGATGAGGGT 58.029 50.000 0.00 0.00 0.00 4.34
125 126 1.561076 TGATTGTGGAGGATGAGGGTG 59.439 52.381 0.00 0.00 0.00 4.61
126 127 1.839994 GATTGTGGAGGATGAGGGTGA 59.160 52.381 0.00 0.00 0.00 4.02
127 128 1.971149 TTGTGGAGGATGAGGGTGAT 58.029 50.000 0.00 0.00 0.00 3.06
128 129 1.206878 TGTGGAGGATGAGGGTGATG 58.793 55.000 0.00 0.00 0.00 3.07
129 130 0.471617 GTGGAGGATGAGGGTGATGG 59.528 60.000 0.00 0.00 0.00 3.51
130 131 0.343018 TGGAGGATGAGGGTGATGGA 59.657 55.000 0.00 0.00 0.00 3.41
131 132 1.055040 GGAGGATGAGGGTGATGGAG 58.945 60.000 0.00 0.00 0.00 3.86
132 133 1.694048 GGAGGATGAGGGTGATGGAGT 60.694 57.143 0.00 0.00 0.00 3.85
133 134 2.122768 GAGGATGAGGGTGATGGAGTT 58.877 52.381 0.00 0.00 0.00 3.01
134 135 2.507471 GAGGATGAGGGTGATGGAGTTT 59.493 50.000 0.00 0.00 0.00 2.66
135 136 2.240667 AGGATGAGGGTGATGGAGTTTG 59.759 50.000 0.00 0.00 0.00 2.93
136 137 2.025887 GGATGAGGGTGATGGAGTTTGT 60.026 50.000 0.00 0.00 0.00 2.83
137 138 2.859165 TGAGGGTGATGGAGTTTGTC 57.141 50.000 0.00 0.00 0.00 3.18
138 139 2.054021 TGAGGGTGATGGAGTTTGTCA 58.946 47.619 0.00 0.00 0.00 3.58
139 140 2.644299 TGAGGGTGATGGAGTTTGTCAT 59.356 45.455 0.00 0.00 0.00 3.06
140 141 3.012518 GAGGGTGATGGAGTTTGTCATG 58.987 50.000 0.00 0.00 0.00 3.07
141 142 1.474077 GGGTGATGGAGTTTGTCATGC 59.526 52.381 0.00 0.00 0.00 4.06
142 143 2.440409 GGTGATGGAGTTTGTCATGCT 58.560 47.619 0.00 0.00 0.00 3.79
143 144 2.421424 GGTGATGGAGTTTGTCATGCTC 59.579 50.000 0.00 0.00 0.00 4.26
144 145 3.341823 GTGATGGAGTTTGTCATGCTCT 58.658 45.455 0.00 0.00 0.00 4.09
145 146 3.126514 GTGATGGAGTTTGTCATGCTCTG 59.873 47.826 0.00 0.00 0.00 3.35
146 147 2.189594 TGGAGTTTGTCATGCTCTGG 57.810 50.000 0.00 0.00 0.00 3.86
147 148 1.699083 TGGAGTTTGTCATGCTCTGGA 59.301 47.619 0.00 0.00 0.00 3.86
148 149 2.306805 TGGAGTTTGTCATGCTCTGGAT 59.693 45.455 0.00 0.00 0.00 3.41
149 150 3.245016 TGGAGTTTGTCATGCTCTGGATT 60.245 43.478 0.00 0.00 0.00 3.01
150 151 3.760684 GGAGTTTGTCATGCTCTGGATTT 59.239 43.478 0.00 0.00 0.00 2.17
151 152 4.219288 GGAGTTTGTCATGCTCTGGATTTT 59.781 41.667 0.00 0.00 0.00 1.82
152 153 5.382618 AGTTTGTCATGCTCTGGATTTTC 57.617 39.130 0.00 0.00 0.00 2.29
153 154 4.828939 AGTTTGTCATGCTCTGGATTTTCA 59.171 37.500 0.00 0.00 0.00 2.69
154 155 5.302568 AGTTTGTCATGCTCTGGATTTTCAA 59.697 36.000 0.00 0.00 0.00 2.69
155 156 5.787953 TTGTCATGCTCTGGATTTTCAAA 57.212 34.783 0.00 0.00 0.00 2.69
156 157 5.988310 TGTCATGCTCTGGATTTTCAAAT 57.012 34.783 0.00 0.00 0.00 2.32
157 158 5.957798 TGTCATGCTCTGGATTTTCAAATC 58.042 37.500 3.97 3.97 43.12 2.17
170 171 6.721704 ATTTTCAAATCCTATCCAGCTTCC 57.278 37.500 0.00 0.00 0.00 3.46
171 172 4.860802 TTCAAATCCTATCCAGCTTCCA 57.139 40.909 0.00 0.00 0.00 3.53
172 173 4.428294 TCAAATCCTATCCAGCTTCCAG 57.572 45.455 0.00 0.00 0.00 3.86
173 174 4.040047 TCAAATCCTATCCAGCTTCCAGA 58.960 43.478 0.00 0.00 0.00 3.86
174 175 4.102210 TCAAATCCTATCCAGCTTCCAGAG 59.898 45.833 0.00 0.00 0.00 3.35
186 187 2.005451 CTTCCAGAGCAGATTCCAACG 58.995 52.381 0.00 0.00 0.00 4.10
187 188 1.266178 TCCAGAGCAGATTCCAACGA 58.734 50.000 0.00 0.00 0.00 3.85
188 189 1.066858 TCCAGAGCAGATTCCAACGAC 60.067 52.381 0.00 0.00 0.00 4.34
189 190 1.338105 CCAGAGCAGATTCCAACGACA 60.338 52.381 0.00 0.00 0.00 4.35
190 191 2.625737 CAGAGCAGATTCCAACGACAT 58.374 47.619 0.00 0.00 0.00 3.06
191 192 3.005554 CAGAGCAGATTCCAACGACATT 58.994 45.455 0.00 0.00 0.00 2.71
192 193 3.438087 CAGAGCAGATTCCAACGACATTT 59.562 43.478 0.00 0.00 0.00 2.32
193 194 3.438087 AGAGCAGATTCCAACGACATTTG 59.562 43.478 0.00 0.00 0.00 2.32
194 195 3.411446 AGCAGATTCCAACGACATTTGA 58.589 40.909 0.00 0.00 0.00 2.69
195 196 4.012374 AGCAGATTCCAACGACATTTGAT 58.988 39.130 0.00 0.00 0.00 2.57
196 197 4.100529 GCAGATTCCAACGACATTTGATG 58.899 43.478 0.00 0.00 0.00 3.07
197 198 4.142622 GCAGATTCCAACGACATTTGATGA 60.143 41.667 0.00 0.00 0.00 2.92
198 199 5.449588 GCAGATTCCAACGACATTTGATGAT 60.450 40.000 0.00 0.00 0.00 2.45
199 200 6.197276 CAGATTCCAACGACATTTGATGATC 58.803 40.000 0.00 0.00 0.00 2.92
200 201 6.037940 CAGATTCCAACGACATTTGATGATCT 59.962 38.462 0.00 0.00 0.00 2.75
201 202 6.600822 AGATTCCAACGACATTTGATGATCTT 59.399 34.615 0.00 0.00 0.00 2.40
202 203 7.770433 AGATTCCAACGACATTTGATGATCTTA 59.230 33.333 0.00 0.00 0.00 2.10
203 204 7.864108 TTCCAACGACATTTGATGATCTTAT 57.136 32.000 0.00 0.00 0.00 1.73
204 205 7.482654 TCCAACGACATTTGATGATCTTATC 57.517 36.000 0.00 0.00 0.00 1.75
205 206 6.483307 TCCAACGACATTTGATGATCTTATCC 59.517 38.462 0.00 0.00 0.00 2.59
206 207 6.260714 CCAACGACATTTGATGATCTTATCCA 59.739 38.462 0.00 0.00 0.00 3.41
207 208 7.201723 CCAACGACATTTGATGATCTTATCCAA 60.202 37.037 0.00 0.00 0.00 3.53
208 209 7.864108 ACGACATTTGATGATCTTATCCAAA 57.136 32.000 0.00 0.00 0.00 3.28
209 210 8.455903 ACGACATTTGATGATCTTATCCAAAT 57.544 30.769 0.00 0.00 0.00 2.32
210 211 8.347771 ACGACATTTGATGATCTTATCCAAATG 58.652 33.333 20.86 20.86 38.97 2.32
211 212 7.325338 CGACATTTGATGATCTTATCCAAATGC 59.675 37.037 21.65 16.64 38.04 3.56
212 213 8.014070 ACATTTGATGATCTTATCCAAATGCA 57.986 30.769 21.65 0.00 38.04 3.96
213 214 8.647796 ACATTTGATGATCTTATCCAAATGCAT 58.352 29.630 21.65 0.00 38.04 3.96
214 215 9.140286 CATTTGATGATCTTATCCAAATGCATC 57.860 33.333 15.32 0.00 33.80 3.91
215 216 7.826918 TTGATGATCTTATCCAAATGCATCA 57.173 32.000 0.00 0.00 39.08 3.07
216 217 8.417273 TTGATGATCTTATCCAAATGCATCAT 57.583 30.769 0.00 0.00 40.09 2.45
217 218 7.826690 TGATGATCTTATCCAAATGCATCATG 58.173 34.615 0.00 2.24 36.82 3.07
218 219 7.668052 TGATGATCTTATCCAAATGCATCATGA 59.332 33.333 12.66 0.00 36.82 3.07
219 220 7.826918 TGATCTTATCCAAATGCATCATGAA 57.173 32.000 12.66 0.00 0.00 2.57
220 221 8.240267 TGATCTTATCCAAATGCATCATGAAA 57.760 30.769 12.66 3.04 0.00 2.69
221 222 8.866093 TGATCTTATCCAAATGCATCATGAAAT 58.134 29.630 12.66 8.80 0.00 2.17
222 223 9.706691 GATCTTATCCAAATGCATCATGAAATT 57.293 29.630 12.66 0.00 0.00 1.82
223 224 9.706691 ATCTTATCCAAATGCATCATGAAATTC 57.293 29.630 12.66 0.00 0.00 2.17
224 225 8.697292 TCTTATCCAAATGCATCATGAAATTCA 58.303 29.630 12.66 0.00 0.00 2.57
225 226 9.320352 CTTATCCAAATGCATCATGAAATTCAA 57.680 29.630 12.66 0.00 0.00 2.69
226 227 6.971527 TCCAAATGCATCATGAAATTCAAC 57.028 33.333 12.66 0.00 0.00 3.18
227 228 6.465084 TCCAAATGCATCATGAAATTCAACA 58.535 32.000 12.66 0.00 0.00 3.33
228 229 7.106890 TCCAAATGCATCATGAAATTCAACAT 58.893 30.769 12.66 0.00 0.00 2.71
229 230 8.258708 TCCAAATGCATCATGAAATTCAACATA 58.741 29.630 12.66 0.00 0.00 2.29
230 231 8.884726 CCAAATGCATCATGAAATTCAACATAA 58.115 29.630 12.66 0.00 0.00 1.90
231 232 9.914923 CAAATGCATCATGAAATTCAACATAAG 57.085 29.630 0.00 0.00 0.00 1.73
232 233 9.878667 AAATGCATCATGAAATTCAACATAAGA 57.121 25.926 0.00 0.00 0.00 2.10
233 234 9.529325 AATGCATCATGAAATTCAACATAAGAG 57.471 29.630 0.00 0.00 0.00 2.85
234 235 7.485810 TGCATCATGAAATTCAACATAAGAGG 58.514 34.615 0.00 0.00 0.00 3.69
235 236 7.339976 TGCATCATGAAATTCAACATAAGAGGA 59.660 33.333 0.00 0.00 0.00 3.71
236 237 8.192774 GCATCATGAAATTCAACATAAGAGGAA 58.807 33.333 0.00 0.00 0.00 3.36
237 238 9.512435 CATCATGAAATTCAACATAAGAGGAAC 57.488 33.333 0.00 0.00 0.00 3.62
250 251 3.857217 AGGAACTCATGAGCAGCTG 57.143 52.632 22.83 10.11 0.00 4.24
251 252 0.392729 AGGAACTCATGAGCAGCTGC 60.393 55.000 31.53 31.53 42.49 5.25
252 253 0.675837 GGAACTCATGAGCAGCTGCA 60.676 55.000 38.24 21.24 45.16 4.41
253 254 1.162698 GAACTCATGAGCAGCTGCAA 58.837 50.000 38.24 26.74 45.16 4.08
254 255 1.538512 GAACTCATGAGCAGCTGCAAA 59.461 47.619 38.24 26.37 45.16 3.68
255 256 1.612676 ACTCATGAGCAGCTGCAAAA 58.387 45.000 38.24 23.82 45.16 2.44
256 257 2.168496 ACTCATGAGCAGCTGCAAAAT 58.832 42.857 38.24 24.90 45.16 1.82
257 258 2.094700 ACTCATGAGCAGCTGCAAAATG 60.095 45.455 38.24 32.50 45.16 2.32
258 259 2.163613 CTCATGAGCAGCTGCAAAATGA 59.836 45.455 38.24 34.21 45.16 2.57
259 260 2.758423 TCATGAGCAGCTGCAAAATGAT 59.242 40.909 38.24 17.87 45.16 2.45
260 261 2.933495 TGAGCAGCTGCAAAATGATC 57.067 45.000 38.24 25.07 45.16 2.92
261 262 2.443416 TGAGCAGCTGCAAAATGATCT 58.557 42.857 38.24 16.27 45.16 2.75
262 263 2.163613 TGAGCAGCTGCAAAATGATCTG 59.836 45.455 38.24 0.00 45.16 2.90
263 264 1.476891 AGCAGCTGCAAAATGATCTGG 59.523 47.619 38.24 0.00 45.16 3.86
264 265 1.203994 GCAGCTGCAAAATGATCTGGT 59.796 47.619 33.36 0.00 41.59 4.00
265 266 2.353406 GCAGCTGCAAAATGATCTGGTT 60.353 45.455 33.36 0.00 41.59 3.67
266 267 3.250744 CAGCTGCAAAATGATCTGGTTG 58.749 45.455 0.00 0.00 0.00 3.77
267 268 3.057104 CAGCTGCAAAATGATCTGGTTGA 60.057 43.478 0.00 0.00 0.00 3.18
268 269 3.192844 AGCTGCAAAATGATCTGGTTGAG 59.807 43.478 1.02 0.00 0.00 3.02
269 270 3.675228 GCTGCAAAATGATCTGGTTGAGG 60.675 47.826 0.00 0.00 0.00 3.86
270 271 2.827322 TGCAAAATGATCTGGTTGAGGG 59.173 45.455 0.00 0.00 0.00 4.30
271 272 2.417787 GCAAAATGATCTGGTTGAGGGC 60.418 50.000 0.00 0.00 0.00 5.19
272 273 2.827322 CAAAATGATCTGGTTGAGGGCA 59.173 45.455 0.00 0.00 0.00 5.36
273 274 3.393426 AAATGATCTGGTTGAGGGCAT 57.607 42.857 0.00 0.00 0.00 4.40
274 275 3.393426 AATGATCTGGTTGAGGGCATT 57.607 42.857 0.00 0.00 0.00 3.56
275 276 2.905415 TGATCTGGTTGAGGGCATTT 57.095 45.000 0.00 0.00 0.00 2.32
276 277 2.726821 TGATCTGGTTGAGGGCATTTC 58.273 47.619 0.00 0.00 0.00 2.17
277 278 2.041485 TGATCTGGTTGAGGGCATTTCA 59.959 45.455 0.00 0.00 0.00 2.69
278 279 2.905415 TCTGGTTGAGGGCATTTCAT 57.095 45.000 0.00 0.00 0.00 2.57
279 280 4.079844 TGATCTGGTTGAGGGCATTTCATA 60.080 41.667 0.00 0.00 0.00 2.15
280 281 4.524802 TCTGGTTGAGGGCATTTCATAT 57.475 40.909 0.00 0.00 0.00 1.78
281 282 4.209538 TCTGGTTGAGGGCATTTCATATG 58.790 43.478 0.00 0.00 0.00 1.78
282 283 3.298619 TGGTTGAGGGCATTTCATATGG 58.701 45.455 2.13 0.00 0.00 2.74
283 284 3.053019 TGGTTGAGGGCATTTCATATGGA 60.053 43.478 2.13 0.00 0.00 3.41
284 285 3.960102 GGTTGAGGGCATTTCATATGGAA 59.040 43.478 0.00 0.00 0.00 3.53
298 299 8.686397 TTTCATATGGAAAATTCGAACATGTG 57.314 30.769 0.00 7.96 42.37 3.21
299 300 6.264832 TCATATGGAAAATTCGAACATGTGC 58.735 36.000 13.91 0.00 32.79 4.57
300 301 4.789012 ATGGAAAATTCGAACATGTGCT 57.211 36.364 0.00 0.00 0.00 4.40
301 302 4.159377 TGGAAAATTCGAACATGTGCTC 57.841 40.909 0.00 0.00 0.00 4.26
302 303 3.163594 GGAAAATTCGAACATGTGCTCG 58.836 45.455 12.69 12.69 35.20 5.03
303 304 3.120338 GGAAAATTCGAACATGTGCTCGA 60.120 43.478 16.61 16.61 40.36 4.04
304 305 3.455619 AAATTCGAACATGTGCTCGAC 57.544 42.857 19.47 0.00 41.56 4.20
305 306 2.370281 ATTCGAACATGTGCTCGACT 57.630 45.000 19.47 13.08 41.56 4.18
306 307 3.503827 ATTCGAACATGTGCTCGACTA 57.496 42.857 19.47 8.95 41.56 2.59
307 308 3.291809 TTCGAACATGTGCTCGACTAA 57.708 42.857 19.47 5.61 41.56 2.24
308 309 2.863739 TCGAACATGTGCTCGACTAAG 58.136 47.619 16.61 0.00 37.68 2.18
309 310 2.228103 TCGAACATGTGCTCGACTAAGT 59.772 45.455 16.61 0.00 37.68 2.24
310 311 2.987149 CGAACATGTGCTCGACTAAGTT 59.013 45.455 13.47 0.00 35.85 2.66
311 312 3.181540 CGAACATGTGCTCGACTAAGTTG 60.182 47.826 13.47 0.00 35.85 3.16
312 313 3.660501 ACATGTGCTCGACTAAGTTGA 57.339 42.857 0.00 0.00 0.00 3.18
313 314 3.990092 ACATGTGCTCGACTAAGTTGAA 58.010 40.909 0.00 0.00 0.00 2.69
314 315 3.741344 ACATGTGCTCGACTAAGTTGAAC 59.259 43.478 0.00 0.00 0.00 3.18
315 316 3.728076 TGTGCTCGACTAAGTTGAACT 57.272 42.857 0.00 0.00 0.00 3.01
316 317 4.841443 TGTGCTCGACTAAGTTGAACTA 57.159 40.909 0.00 0.00 0.00 2.24
317 318 5.386958 TGTGCTCGACTAAGTTGAACTAT 57.613 39.130 0.00 0.00 0.00 2.12
318 319 5.779922 TGTGCTCGACTAAGTTGAACTATT 58.220 37.500 0.00 0.00 0.00 1.73
319 320 6.220930 TGTGCTCGACTAAGTTGAACTATTT 58.779 36.000 0.00 0.00 0.00 1.40
320 321 6.704493 TGTGCTCGACTAAGTTGAACTATTTT 59.296 34.615 0.00 0.00 0.00 1.82
321 322 7.225931 TGTGCTCGACTAAGTTGAACTATTTTT 59.774 33.333 0.00 0.00 0.00 1.94
392 393 9.853555 TGTTGCATTGTAATATTTACCTTCAAG 57.146 29.630 0.00 0.00 0.00 3.02
396 397 9.185192 GCATTGTAATATTTACCTTCAAGATGC 57.815 33.333 0.00 0.00 0.00 3.91
407 408 8.635765 TTACCTTCAAGATGCTTAAGAATTGT 57.364 30.769 6.67 0.00 0.00 2.71
408 409 6.917533 ACCTTCAAGATGCTTAAGAATTGTG 58.082 36.000 6.67 3.94 0.00 3.33
409 410 6.491403 ACCTTCAAGATGCTTAAGAATTGTGT 59.509 34.615 6.67 0.00 0.00 3.72
410 411 7.014615 ACCTTCAAGATGCTTAAGAATTGTGTT 59.985 33.333 6.67 0.00 0.00 3.32
411 412 7.327761 CCTTCAAGATGCTTAAGAATTGTGTTG 59.672 37.037 6.67 4.82 0.00 3.33
412 413 7.275888 TCAAGATGCTTAAGAATTGTGTTGT 57.724 32.000 6.67 0.00 0.00 3.32
413 414 7.715657 TCAAGATGCTTAAGAATTGTGTTGTT 58.284 30.769 6.67 0.00 0.00 2.83
414 415 8.196771 TCAAGATGCTTAAGAATTGTGTTGTTT 58.803 29.630 6.67 0.00 0.00 2.83
415 416 9.462174 CAAGATGCTTAAGAATTGTGTTGTTTA 57.538 29.630 6.67 0.00 0.00 2.01
417 418 9.846248 AGATGCTTAAGAATTGTGTTGTTTATC 57.154 29.630 6.67 0.00 0.00 1.75
418 419 9.846248 GATGCTTAAGAATTGTGTTGTTTATCT 57.154 29.630 6.67 0.00 0.00 1.98
431 432 9.645059 TGTGTTGTTTATCTTTGATTGTTTTCA 57.355 25.926 0.00 0.00 0.00 2.69
466 467 9.719355 TGTATAGAAAATAACAAACTGAGAGCA 57.281 29.630 0.00 0.00 0.00 4.26
469 470 7.992754 AGAAAATAACAAACTGAGAGCAGAT 57.007 32.000 0.00 0.00 45.17 2.90
471 472 9.678260 AGAAAATAACAAACTGAGAGCAGATAT 57.322 29.630 0.00 0.00 45.17 1.63
475 476 9.453572 AATAACAAACTGAGAGCAGATATTTGA 57.546 29.630 11.79 0.00 45.17 2.69
476 477 6.734104 ACAAACTGAGAGCAGATATTTGAC 57.266 37.500 11.79 0.00 45.17 3.18
477 478 5.349817 ACAAACTGAGAGCAGATATTTGACG 59.650 40.000 11.79 0.00 45.17 4.35
478 479 3.452474 ACTGAGAGCAGATATTTGACGC 58.548 45.455 0.00 0.00 45.17 5.19
479 480 2.799412 CTGAGAGCAGATATTTGACGCC 59.201 50.000 0.00 0.00 45.17 5.68
480 481 2.432146 TGAGAGCAGATATTTGACGCCT 59.568 45.455 0.00 0.00 0.00 5.52
481 482 2.799412 GAGAGCAGATATTTGACGCCTG 59.201 50.000 0.00 0.00 0.00 4.85
482 483 3.833706 GCAGATATTTGACGCCTGC 57.166 52.632 0.00 0.00 42.52 4.85
483 484 0.041839 GCAGATATTTGACGCCTGCG 60.042 55.000 10.40 10.40 40.40 5.18
484 485 0.583438 CAGATATTTGACGCCTGCGG 59.417 55.000 16.63 0.00 44.69 5.69
485 486 0.178068 AGATATTTGACGCCTGCGGT 59.822 50.000 16.63 1.38 44.69 5.68
486 487 1.014352 GATATTTGACGCCTGCGGTT 58.986 50.000 16.63 0.00 44.69 4.44
487 488 0.732571 ATATTTGACGCCTGCGGTTG 59.267 50.000 16.63 0.00 44.69 3.77
488 489 0.320858 TATTTGACGCCTGCGGTTGA 60.321 50.000 16.63 0.00 44.69 3.18
489 490 1.169661 ATTTGACGCCTGCGGTTGAA 61.170 50.000 16.63 5.55 44.69 2.69
490 491 1.169661 TTTGACGCCTGCGGTTGAAT 61.170 50.000 16.63 0.00 44.69 2.57
491 492 1.851021 TTGACGCCTGCGGTTGAATG 61.851 55.000 16.63 0.00 44.69 2.67
492 493 2.031919 ACGCCTGCGGTTGAATGA 59.968 55.556 16.63 0.00 44.69 2.57
493 494 2.240612 GACGCCTGCGGTTGAATGAC 62.241 60.000 16.63 0.00 44.69 3.06
494 495 2.877691 GCCTGCGGTTGAATGACC 59.122 61.111 0.00 0.00 36.31 4.02
495 496 1.675641 GCCTGCGGTTGAATGACCT 60.676 57.895 0.00 0.00 37.56 3.85
496 497 1.648467 GCCTGCGGTTGAATGACCTC 61.648 60.000 0.00 0.00 37.56 3.85
497 498 1.026718 CCTGCGGTTGAATGACCTCC 61.027 60.000 0.00 0.00 37.56 4.30
498 499 1.002624 TGCGGTTGAATGACCTCCC 60.003 57.895 0.00 0.00 37.56 4.30
499 500 1.749258 GCGGTTGAATGACCTCCCC 60.749 63.158 0.00 0.00 37.56 4.81
500 501 1.077716 CGGTTGAATGACCTCCCCC 60.078 63.158 0.00 0.00 37.56 5.40
516 517 0.773644 CCCCCTATCCTTGTCCATGG 59.226 60.000 4.97 4.97 0.00 3.66
517 518 1.698928 CCCCCTATCCTTGTCCATGGA 60.699 57.143 11.44 11.44 38.74 3.41
518 519 1.421646 CCCCTATCCTTGTCCATGGAC 59.578 57.143 33.97 33.97 44.77 4.02
536 537 1.588404 GACACGTCCAGCATGTATTCG 59.412 52.381 0.00 0.00 0.00 3.34
537 538 1.067142 ACACGTCCAGCATGTATTCGT 60.067 47.619 0.00 0.00 0.00 3.85
538 539 2.164827 ACACGTCCAGCATGTATTCGTA 59.835 45.455 0.00 0.00 0.00 3.43
539 540 2.789339 CACGTCCAGCATGTATTCGTAG 59.211 50.000 0.00 0.00 0.00 3.51
540 541 2.686405 ACGTCCAGCATGTATTCGTAGA 59.314 45.455 0.00 0.00 0.00 2.59
541 542 3.043586 CGTCCAGCATGTATTCGTAGAC 58.956 50.000 0.00 0.00 34.32 2.59
542 543 3.488553 CGTCCAGCATGTATTCGTAGACA 60.489 47.826 0.00 0.00 34.32 3.41
543 544 4.621991 GTCCAGCATGTATTCGTAGACAT 58.378 43.478 0.00 0.00 36.67 3.06
544 545 5.050490 GTCCAGCATGTATTCGTAGACATT 58.950 41.667 0.00 0.00 34.09 2.71
545 546 5.523916 GTCCAGCATGTATTCGTAGACATTT 59.476 40.000 0.00 0.00 34.09 2.32
546 547 5.753438 TCCAGCATGTATTCGTAGACATTTC 59.247 40.000 0.00 0.00 34.09 2.17
547 548 5.332581 CCAGCATGTATTCGTAGACATTTCG 60.333 44.000 0.00 0.00 34.09 3.46
548 549 5.458779 CAGCATGTATTCGTAGACATTTCGA 59.541 40.000 0.00 0.00 34.09 3.71
549 550 6.144563 CAGCATGTATTCGTAGACATTTCGAT 59.855 38.462 0.00 0.00 34.09 3.59
550 551 6.144563 AGCATGTATTCGTAGACATTTCGATG 59.855 38.462 0.00 0.00 34.09 3.84
551 552 6.143919 GCATGTATTCGTAGACATTTCGATGA 59.856 38.462 0.00 0.00 34.09 2.92
554 555 7.255569 TGTATTCGTAGACATTTCGATGAGTT 58.744 34.615 0.00 0.00 34.32 3.01
570 571 3.199677 TGAGTTCGTTTTGGTGATTCGT 58.800 40.909 0.00 0.00 0.00 3.85
582 583 2.223377 GGTGATTCGTGTTGGAGTTGTC 59.777 50.000 0.00 0.00 0.00 3.18
583 584 2.223377 GTGATTCGTGTTGGAGTTGTCC 59.777 50.000 0.00 0.00 44.24 4.02
585 586 2.234300 TTCGTGTTGGAGTTGTCCTC 57.766 50.000 0.00 0.00 44.30 3.71
593 594 1.980765 TGGAGTTGTCCTCAGCTTCAT 59.019 47.619 0.00 0.00 44.30 2.57
597 598 5.003804 GGAGTTGTCCTCAGCTTCATAAAA 58.996 41.667 0.00 0.00 42.40 1.52
598 599 5.123027 GGAGTTGTCCTCAGCTTCATAAAAG 59.877 44.000 0.00 0.00 42.40 2.27
601 602 6.205658 AGTTGTCCTCAGCTTCATAAAAGAAC 59.794 38.462 0.00 0.00 31.23 3.01
602 603 5.869579 TGTCCTCAGCTTCATAAAAGAACT 58.130 37.500 0.00 0.00 0.00 3.01
613 614 5.411781 TCATAAAAGAACTCTTCGCTCCTC 58.588 41.667 0.00 0.00 34.61 3.71
617 618 1.822371 AGAACTCTTCGCTCCTCTTCC 59.178 52.381 0.00 0.00 34.02 3.46
624 625 0.034896 TCGCTCCTCTTCCCACAAAC 59.965 55.000 0.00 0.00 0.00 2.93
625 626 1.291877 CGCTCCTCTTCCCACAAACG 61.292 60.000 0.00 0.00 0.00 3.60
626 627 1.578206 GCTCCTCTTCCCACAAACGC 61.578 60.000 0.00 0.00 0.00 4.84
627 628 0.955919 CTCCTCTTCCCACAAACGCC 60.956 60.000 0.00 0.00 0.00 5.68
628 629 1.971695 CCTCTTCCCACAAACGCCC 60.972 63.158 0.00 0.00 0.00 6.13
629 630 1.228124 CTCTTCCCACAAACGCCCA 60.228 57.895 0.00 0.00 0.00 5.36
630 631 0.609131 CTCTTCCCACAAACGCCCAT 60.609 55.000 0.00 0.00 0.00 4.00
631 632 0.893270 TCTTCCCACAAACGCCCATG 60.893 55.000 0.00 0.00 0.00 3.66
632 633 1.152652 TTCCCACAAACGCCCATGT 60.153 52.632 0.00 0.00 0.00 3.21
640 644 1.592081 CAAACGCCCATGTTTTGTGTG 59.408 47.619 0.00 0.00 39.94 3.82
670 679 3.921677 TCAGTGGAGTGATTCGTTAACC 58.078 45.455 0.00 0.00 0.00 2.85
689 698 1.608590 CCAGTTGACATTGACCACACC 59.391 52.381 0.00 0.00 0.00 4.16
727 741 7.254151 GGAATCAAATCAGTCGAGTAGCTTAAC 60.254 40.741 0.00 0.00 0.00 2.01
787 801 2.222027 GGGATGAAGGCCGTCATTAAG 58.778 52.381 31.00 0.00 38.38 1.85
806 820 8.531146 TCATTAAGACTCACAGTTGACATGATA 58.469 33.333 0.00 0.00 0.00 2.15
855 869 3.486708 CGAGGAGACGAAGATCAAGTCAG 60.487 52.174 14.64 1.69 37.36 3.51
858 872 3.178267 GAGACGAAGATCAAGTCAGCTG 58.822 50.000 7.63 7.63 37.36 4.24
877 891 3.430929 GCTGGACAGGTCAACCATACTAG 60.431 52.174 1.33 0.00 38.89 2.57
892 906 5.765182 ACCATACTAGGCATCATTAGCAAAC 59.235 40.000 0.00 0.00 0.00 2.93
947 962 0.811281 GCCAGCTCCACAACCATAAC 59.189 55.000 0.00 0.00 0.00 1.89
977 992 1.946745 GCCATTAGCAGTCTCCACTC 58.053 55.000 0.00 0.00 42.97 3.51
998 1031 4.839121 TCCACTACACCGAGCAAATTATT 58.161 39.130 0.00 0.00 0.00 1.40
1043 1079 1.167781 TCACTGGTGCTCGTCGTGTA 61.168 55.000 0.00 0.00 0.00 2.90
1683 1949 0.692419 ATCTCTTCTGGGCCATCCGT 60.692 55.000 6.72 0.00 38.76 4.69
1719 1985 3.515316 CTTCGGCGTGGTGGTGTCT 62.515 63.158 6.85 0.00 0.00 3.41
2362 2636 0.535335 GTACGGGTTCATGGAGCAGA 59.465 55.000 10.48 0.00 0.00 4.26
2364 2638 0.400213 ACGGGTTCATGGAGCAGAAA 59.600 50.000 10.48 0.00 0.00 2.52
2430 2704 1.671054 CATCGGGCAGAACGTGGTT 60.671 57.895 0.00 0.00 0.00 3.67
2437 2711 1.885388 CAGAACGTGGTTGGCGACA 60.885 57.895 7.28 0.00 39.83 4.35
2467 2741 2.513204 CGTACGAGAGCGGGAGGA 60.513 66.667 10.44 0.00 43.17 3.71
2568 2842 1.219124 GAACGAGCAGAGCATCCCA 59.781 57.895 0.00 0.00 33.66 4.37
2602 2885 0.244994 CTAGGCTGCAACGAGTGAGT 59.755 55.000 0.50 0.00 0.00 3.41
2610 2893 2.159099 TGCAACGAGTGAGTGAACTTCT 60.159 45.455 0.00 0.00 0.00 2.85
2612 2895 2.690173 ACGAGTGAGTGAACTTCTCG 57.310 50.000 23.94 23.94 45.95 4.04
2756 3041 9.413734 CTTGAATAAGGAATAAAGATTGGGACT 57.586 33.333 0.00 0.00 0.00 3.85
2787 3072 7.120285 ACATGTCAGTGGATGAAGTAGATTTTG 59.880 37.037 9.32 0.00 40.43 2.44
2798 3084 9.813080 GATGAAGTAGATTTTGGTATAATTCGC 57.187 33.333 0.00 0.00 0.00 4.70
2906 4981 2.366034 ACCCCTAACCGCCTACCC 60.366 66.667 0.00 0.00 0.00 3.69
2911 4986 1.520787 CTAACCGCCTACCCGCAAG 60.521 63.158 0.00 0.00 0.00 4.01
2938 5013 2.512692 TAGACCCACTGCCGTTACTA 57.487 50.000 0.00 0.00 0.00 1.82
2950 5025 1.381928 CGTTACTAGAGGCCAGCGGA 61.382 60.000 5.01 0.00 0.00 5.54
3023 5098 4.193893 CCCCCATCTCATGCGCCA 62.194 66.667 4.18 0.00 0.00 5.69
3024 5099 2.114625 CCCCATCTCATGCGCCAT 59.885 61.111 4.18 0.00 0.00 4.40
3041 5116 4.833811 TCGAATGGCGATCACCTG 57.166 55.556 0.64 0.00 45.59 4.00
3072 5149 2.176369 CGCACATGAACCAATAAAGCG 58.824 47.619 0.00 0.00 36.62 4.68
3081 5158 1.819632 CAATAAAGCGGCCGCCTCT 60.820 57.895 44.47 30.63 43.17 3.69
3090 5167 1.154205 CGGCCGCCTCTCATAAAGTG 61.154 60.000 14.67 0.00 0.00 3.16
3091 5168 0.178068 GGCCGCCTCTCATAAAGTGA 59.822 55.000 0.71 0.00 35.05 3.41
3093 5170 2.139118 GCCGCCTCTCATAAAGTGATC 58.861 52.381 0.00 0.00 35.97 2.92
3094 5171 2.224161 GCCGCCTCTCATAAAGTGATCT 60.224 50.000 0.00 0.00 35.97 2.75
3095 5172 3.005897 GCCGCCTCTCATAAAGTGATCTA 59.994 47.826 0.00 0.00 35.97 1.98
3096 5173 4.551388 CCGCCTCTCATAAAGTGATCTAC 58.449 47.826 0.00 0.00 35.97 2.59
3097 5174 4.279671 CCGCCTCTCATAAAGTGATCTACT 59.720 45.833 0.00 0.00 42.89 2.57
3112 5189 7.911651 AGTGATCTACTTCTTTTCAGGATCAA 58.088 34.615 0.00 0.00 39.39 2.57
3142 5219 6.384015 AGGAGGACTTGTTGATCACATACATA 59.616 38.462 0.00 0.00 34.43 2.29
3144 5221 7.552687 GGAGGACTTGTTGATCACATACATAAA 59.447 37.037 0.00 0.00 34.43 1.40
3191 5268 4.282957 TCCATTTGCTTTAGAACATGCCAA 59.717 37.500 0.00 0.00 0.00 4.52
3202 5413 9.888878 CTTTAGAACATGCCAATGAACATATAG 57.111 33.333 0.00 0.00 37.24 1.31
3211 5422 6.979817 TGCCAATGAACATATAGTCAATTTGC 59.020 34.615 0.00 0.00 30.56 3.68
3307 5867 8.000709 AGAAAAGATACTATCCATGCCAATGAA 58.999 33.333 0.00 0.00 35.67 2.57
3322 5882 4.022068 GCCAATGAACATCAAAGAAGGACA 60.022 41.667 0.00 0.00 0.00 4.02
3330 5890 4.202398 ACATCAAAGAAGGACAGCTTGAGA 60.202 41.667 0.00 0.00 0.00 3.27
3333 5893 4.818546 TCAAAGAAGGACAGCTTGAGAAAG 59.181 41.667 0.00 0.00 0.00 2.62
3402 8720 2.818432 GCAGAATAGAATGGCTCCATGG 59.182 50.000 4.97 4.97 36.68 3.66
3440 8758 7.875971 AGTTTGCTAAAAACAATAGAGACCAG 58.124 34.615 4.00 0.00 32.81 4.00
3535 9952 2.092429 AGGGATGTATCATGCGGTTTGT 60.092 45.455 0.00 0.00 0.00 2.83
3545 9962 1.106351 TGCGGTTTGTCTTGTGCCAT 61.106 50.000 0.00 0.00 0.00 4.40
3556 9973 2.697229 TCTTGTGCCATCTCATCGATCT 59.303 45.455 0.00 0.00 0.00 2.75
3560 9977 1.013005 GCCATCTCATCGATCTGCGG 61.013 60.000 0.00 0.00 41.33 5.69
3566 9983 2.667536 ATCGATCTGCGGCATGGC 60.668 61.111 9.69 9.69 41.33 4.40
3582 9999 4.329545 GCCTGCCCCGTCACTGAA 62.330 66.667 0.00 0.00 0.00 3.02
3583 10000 2.358737 CCTGCCCCGTCACTGAAC 60.359 66.667 0.00 0.00 0.00 3.18
3584 10001 2.743718 CTGCCCCGTCACTGAACT 59.256 61.111 0.00 0.00 0.00 3.01
3585 10002 1.541310 CCTGCCCCGTCACTGAACTA 61.541 60.000 0.00 0.00 0.00 2.24
3586 10003 0.537188 CTGCCCCGTCACTGAACTAT 59.463 55.000 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.379243 CGGGCTTGGAGCACTCGT 62.379 66.667 0.27 0.00 44.04 4.18
5 6 3.883744 AACGGGCTTGGAGCACTCG 62.884 63.158 0.27 4.69 44.04 4.18
6 7 1.172812 AAAACGGGCTTGGAGCACTC 61.173 55.000 0.27 0.00 44.04 3.51
7 8 1.152756 AAAACGGGCTTGGAGCACT 60.153 52.632 0.27 0.00 44.04 4.40
8 9 1.007387 CAAAACGGGCTTGGAGCAC 60.007 57.895 2.04 0.00 44.75 4.40
11 12 1.892209 ACTACAAAACGGGCTTGGAG 58.108 50.000 4.57 4.57 40.12 3.86
12 13 1.950909 CAACTACAAAACGGGCTTGGA 59.049 47.619 0.00 0.00 0.00 3.53
13 14 1.679153 ACAACTACAAAACGGGCTTGG 59.321 47.619 0.00 0.00 0.00 3.61
15 16 3.193903 ACAAACAACTACAAAACGGGCTT 59.806 39.130 0.00 0.00 0.00 4.35
16 17 2.756207 ACAAACAACTACAAAACGGGCT 59.244 40.909 0.00 0.00 0.00 5.19
17 18 2.855370 CACAAACAACTACAAAACGGGC 59.145 45.455 0.00 0.00 0.00 6.13
18 19 4.358494 TCACAAACAACTACAAAACGGG 57.642 40.909 0.00 0.00 0.00 5.28
19 20 4.559643 GGTTCACAAACAACTACAAAACGG 59.440 41.667 0.00 0.00 37.10 4.44
20 21 5.395642 AGGTTCACAAACAACTACAAAACG 58.604 37.500 0.00 0.00 37.10 3.60
21 22 7.532571 AGTAGGTTCACAAACAACTACAAAAC 58.467 34.615 0.00 0.00 34.85 2.43
22 23 7.690952 AGTAGGTTCACAAACAACTACAAAA 57.309 32.000 0.00 0.00 34.85 2.44
23 24 8.789825 TTAGTAGGTTCACAAACAACTACAAA 57.210 30.769 0.00 0.00 36.19 2.83
24 25 8.667463 GTTTAGTAGGTTCACAAACAACTACAA 58.333 33.333 0.00 0.00 36.19 2.41
25 26 8.042515 AGTTTAGTAGGTTCACAAACAACTACA 58.957 33.333 0.00 0.00 36.19 2.74
26 27 8.333186 CAGTTTAGTAGGTTCACAAACAACTAC 58.667 37.037 0.00 0.00 36.19 2.73
27 28 8.042515 ACAGTTTAGTAGGTTCACAAACAACTA 58.957 33.333 0.00 0.00 37.10 2.24
28 29 6.882678 ACAGTTTAGTAGGTTCACAAACAACT 59.117 34.615 0.00 0.00 37.10 3.16
29 30 6.964934 CACAGTTTAGTAGGTTCACAAACAAC 59.035 38.462 0.00 0.00 37.10 3.32
30 31 6.094325 CCACAGTTTAGTAGGTTCACAAACAA 59.906 38.462 0.00 0.00 37.10 2.83
31 32 5.587043 CCACAGTTTAGTAGGTTCACAAACA 59.413 40.000 0.00 0.00 37.10 2.83
32 33 5.008316 CCCACAGTTTAGTAGGTTCACAAAC 59.992 44.000 0.00 0.00 34.46 2.93
33 34 5.104444 TCCCACAGTTTAGTAGGTTCACAAA 60.104 40.000 0.00 0.00 0.00 2.83
34 35 4.409574 TCCCACAGTTTAGTAGGTTCACAA 59.590 41.667 0.00 0.00 0.00 3.33
35 36 3.968649 TCCCACAGTTTAGTAGGTTCACA 59.031 43.478 0.00 0.00 0.00 3.58
36 37 4.612264 TCCCACAGTTTAGTAGGTTCAC 57.388 45.455 0.00 0.00 0.00 3.18
37 38 4.224370 GGATCCCACAGTTTAGTAGGTTCA 59.776 45.833 0.00 0.00 0.00 3.18
38 39 4.224370 TGGATCCCACAGTTTAGTAGGTTC 59.776 45.833 9.90 0.00 0.00 3.62
39 40 4.172807 TGGATCCCACAGTTTAGTAGGTT 58.827 43.478 9.90 0.00 0.00 3.50
40 41 3.798515 TGGATCCCACAGTTTAGTAGGT 58.201 45.455 9.90 0.00 0.00 3.08
41 42 4.837093 TTGGATCCCACAGTTTAGTAGG 57.163 45.455 9.90 0.00 30.78 3.18
42 43 5.875359 GTCTTTGGATCCCACAGTTTAGTAG 59.125 44.000 9.90 0.00 33.46 2.57
43 44 5.308497 TGTCTTTGGATCCCACAGTTTAGTA 59.692 40.000 9.90 0.00 33.46 1.82
44 45 4.104102 TGTCTTTGGATCCCACAGTTTAGT 59.896 41.667 9.90 0.00 33.46 2.24
45 46 4.651778 TGTCTTTGGATCCCACAGTTTAG 58.348 43.478 9.90 0.00 33.46 1.85
46 47 4.715534 TGTCTTTGGATCCCACAGTTTA 57.284 40.909 9.90 0.00 33.46 2.01
47 48 3.593442 TGTCTTTGGATCCCACAGTTT 57.407 42.857 9.90 0.00 33.46 2.66
48 49 3.814504 ATGTCTTTGGATCCCACAGTT 57.185 42.857 9.90 0.00 33.46 3.16
49 50 3.181429 ACAATGTCTTTGGATCCCACAGT 60.181 43.478 9.90 3.40 39.80 3.55
50 51 3.424703 ACAATGTCTTTGGATCCCACAG 58.575 45.455 9.90 2.28 39.80 3.66
51 52 3.181435 TGACAATGTCTTTGGATCCCACA 60.181 43.478 14.97 7.32 39.80 4.17
52 53 3.420893 TGACAATGTCTTTGGATCCCAC 58.579 45.455 14.97 1.23 39.80 4.61
53 54 3.805066 TGACAATGTCTTTGGATCCCA 57.195 42.857 14.97 0.00 39.80 4.37
54 55 4.766891 TCTTTGACAATGTCTTTGGATCCC 59.233 41.667 14.97 0.00 39.80 3.85
55 56 5.964958 TCTTTGACAATGTCTTTGGATCC 57.035 39.130 14.97 4.20 39.80 3.36
56 57 7.149569 TCATCTTTGACAATGTCTTTGGATC 57.850 36.000 14.97 0.00 39.80 3.36
57 58 7.395206 TCATCATCTTTGACAATGTCTTTGGAT 59.605 33.333 14.97 9.65 39.80 3.41
58 59 6.716173 TCATCATCTTTGACAATGTCTTTGGA 59.284 34.615 14.97 7.91 39.80 3.53
59 60 6.916440 TCATCATCTTTGACAATGTCTTTGG 58.084 36.000 14.97 2.93 39.80 3.28
60 61 7.009265 GCATCATCATCTTTGACAATGTCTTTG 59.991 37.037 14.97 4.60 41.36 2.77
61 62 7.033791 GCATCATCATCTTTGACAATGTCTTT 58.966 34.615 14.97 0.00 33.85 2.52
62 63 6.377429 AGCATCATCATCTTTGACAATGTCTT 59.623 34.615 14.97 0.00 33.85 3.01
63 64 5.886474 AGCATCATCATCTTTGACAATGTCT 59.114 36.000 14.97 0.00 33.85 3.41
64 65 6.132791 AGCATCATCATCTTTGACAATGTC 57.867 37.500 6.41 6.41 33.85 3.06
65 66 6.071560 ACAAGCATCATCATCTTTGACAATGT 60.072 34.615 0.00 0.00 33.85 2.71
66 67 6.253512 CACAAGCATCATCATCTTTGACAATG 59.746 38.462 0.00 0.00 33.85 2.82
67 68 6.152154 TCACAAGCATCATCATCTTTGACAAT 59.848 34.615 0.00 0.00 33.85 2.71
68 69 5.474189 TCACAAGCATCATCATCTTTGACAA 59.526 36.000 0.00 0.00 33.85 3.18
69 70 5.005094 TCACAAGCATCATCATCTTTGACA 58.995 37.500 0.00 0.00 33.85 3.58
70 71 5.556355 TCACAAGCATCATCATCTTTGAC 57.444 39.130 0.00 0.00 33.85 3.18
71 72 5.883673 TGATCACAAGCATCATCATCTTTGA 59.116 36.000 0.00 0.00 36.00 2.69
72 73 6.131544 TGATCACAAGCATCATCATCTTTG 57.868 37.500 0.00 0.00 0.00 2.77
73 74 6.546034 TCATGATCACAAGCATCATCATCTTT 59.454 34.615 0.00 0.00 38.67 2.52
74 75 6.062095 TCATGATCACAAGCATCATCATCTT 58.938 36.000 0.00 0.00 38.67 2.40
75 76 5.621193 TCATGATCACAAGCATCATCATCT 58.379 37.500 0.00 0.00 38.67 2.90
76 77 5.941948 TCATGATCACAAGCATCATCATC 57.058 39.130 0.00 0.00 38.67 2.92
77 78 5.592688 TGTTCATGATCACAAGCATCATCAT 59.407 36.000 0.00 0.00 38.67 2.45
78 79 4.944930 TGTTCATGATCACAAGCATCATCA 59.055 37.500 0.00 0.00 38.67 3.07
79 80 5.494632 TGTTCATGATCACAAGCATCATC 57.505 39.130 0.00 0.00 38.67 2.92
80 81 5.907866 TTGTTCATGATCACAAGCATCAT 57.092 34.783 8.57 0.00 40.92 2.45
81 82 5.907866 ATTGTTCATGATCACAAGCATCA 57.092 34.783 16.01 0.00 36.36 3.07
82 83 7.645402 TCATATTGTTCATGATCACAAGCATC 58.355 34.615 16.01 0.00 36.36 3.91
83 84 7.576861 TCATATTGTTCATGATCACAAGCAT 57.423 32.000 16.01 10.18 36.36 3.79
84 85 7.576861 ATCATATTGTTCATGATCACAAGCA 57.423 32.000 16.01 8.68 38.47 3.91
85 86 7.919091 ACAATCATATTGTTCATGATCACAAGC 59.081 33.333 16.01 0.00 41.24 4.01
86 87 9.233232 CACAATCATATTGTTCATGATCACAAG 57.767 33.333 16.01 5.69 41.24 3.16
87 88 8.192110 CCACAATCATATTGTTCATGATCACAA 58.808 33.333 13.84 13.84 41.24 3.33
88 89 7.556996 TCCACAATCATATTGTTCATGATCACA 59.443 33.333 5.96 0.88 41.24 3.58
89 90 7.933396 TCCACAATCATATTGTTCATGATCAC 58.067 34.615 5.96 0.00 41.24 3.06
90 91 7.229907 CCTCCACAATCATATTGTTCATGATCA 59.770 37.037 0.00 0.00 41.24 2.92
91 92 7.446319 TCCTCCACAATCATATTGTTCATGATC 59.554 37.037 0.00 0.00 41.24 2.92
92 93 7.292319 TCCTCCACAATCATATTGTTCATGAT 58.708 34.615 0.00 0.00 43.38 2.45
93 94 6.661777 TCCTCCACAATCATATTGTTCATGA 58.338 36.000 2.59 0.00 36.86 3.07
94 95 6.947644 TCCTCCACAATCATATTGTTCATG 57.052 37.500 2.59 0.00 0.00 3.07
95 96 7.292319 TCATCCTCCACAATCATATTGTTCAT 58.708 34.615 2.59 0.00 0.00 2.57
96 97 6.661777 TCATCCTCCACAATCATATTGTTCA 58.338 36.000 2.59 0.00 0.00 3.18
97 98 6.206243 CCTCATCCTCCACAATCATATTGTTC 59.794 42.308 2.59 0.00 0.00 3.18
98 99 6.066690 CCTCATCCTCCACAATCATATTGTT 58.933 40.000 2.59 0.00 0.00 2.83
99 100 5.457197 CCCTCATCCTCCACAATCATATTGT 60.457 44.000 0.00 0.00 0.00 2.71
100 101 5.008331 CCCTCATCCTCCACAATCATATTG 58.992 45.833 0.00 0.00 0.00 1.90
101 102 4.666907 ACCCTCATCCTCCACAATCATATT 59.333 41.667 0.00 0.00 0.00 1.28
102 103 4.042560 CACCCTCATCCTCCACAATCATAT 59.957 45.833 0.00 0.00 0.00 1.78
103 104 3.392285 CACCCTCATCCTCCACAATCATA 59.608 47.826 0.00 0.00 0.00 2.15
104 105 2.174210 CACCCTCATCCTCCACAATCAT 59.826 50.000 0.00 0.00 0.00 2.45
105 106 1.561076 CACCCTCATCCTCCACAATCA 59.439 52.381 0.00 0.00 0.00 2.57
106 107 1.839994 TCACCCTCATCCTCCACAATC 59.160 52.381 0.00 0.00 0.00 2.67
107 108 1.971149 TCACCCTCATCCTCCACAAT 58.029 50.000 0.00 0.00 0.00 2.71
108 109 1.561076 CATCACCCTCATCCTCCACAA 59.439 52.381 0.00 0.00 0.00 3.33
109 110 1.206878 CATCACCCTCATCCTCCACA 58.793 55.000 0.00 0.00 0.00 4.17
110 111 0.471617 CCATCACCCTCATCCTCCAC 59.528 60.000 0.00 0.00 0.00 4.02
111 112 0.343018 TCCATCACCCTCATCCTCCA 59.657 55.000 0.00 0.00 0.00 3.86
112 113 1.055040 CTCCATCACCCTCATCCTCC 58.945 60.000 0.00 0.00 0.00 4.30
113 114 1.799933 ACTCCATCACCCTCATCCTC 58.200 55.000 0.00 0.00 0.00 3.71
114 115 2.240667 CAAACTCCATCACCCTCATCCT 59.759 50.000 0.00 0.00 0.00 3.24
115 116 2.025887 ACAAACTCCATCACCCTCATCC 60.026 50.000 0.00 0.00 0.00 3.51
116 117 3.274288 GACAAACTCCATCACCCTCATC 58.726 50.000 0.00 0.00 0.00 2.92
117 118 2.644299 TGACAAACTCCATCACCCTCAT 59.356 45.455 0.00 0.00 0.00 2.90
118 119 2.054021 TGACAAACTCCATCACCCTCA 58.946 47.619 0.00 0.00 0.00 3.86
119 120 2.859165 TGACAAACTCCATCACCCTC 57.141 50.000 0.00 0.00 0.00 4.30
120 121 2.881403 GCATGACAAACTCCATCACCCT 60.881 50.000 0.00 0.00 0.00 4.34
121 122 1.474077 GCATGACAAACTCCATCACCC 59.526 52.381 0.00 0.00 0.00 4.61
122 123 2.421424 GAGCATGACAAACTCCATCACC 59.579 50.000 0.00 0.00 0.00 4.02
123 124 3.126514 CAGAGCATGACAAACTCCATCAC 59.873 47.826 0.00 0.00 0.00 3.06
124 125 3.340928 CAGAGCATGACAAACTCCATCA 58.659 45.455 0.00 0.00 0.00 3.07
125 126 2.681848 CCAGAGCATGACAAACTCCATC 59.318 50.000 0.00 0.00 0.00 3.51
126 127 2.306805 TCCAGAGCATGACAAACTCCAT 59.693 45.455 0.00 0.00 0.00 3.41
127 128 1.699083 TCCAGAGCATGACAAACTCCA 59.301 47.619 0.00 0.00 0.00 3.86
128 129 2.479566 TCCAGAGCATGACAAACTCC 57.520 50.000 0.00 0.00 0.00 3.85
129 130 5.048504 TGAAAATCCAGAGCATGACAAACTC 60.049 40.000 0.00 0.00 0.00 3.01
130 131 4.828939 TGAAAATCCAGAGCATGACAAACT 59.171 37.500 0.00 0.00 0.00 2.66
131 132 5.125100 TGAAAATCCAGAGCATGACAAAC 57.875 39.130 0.00 0.00 0.00 2.93
132 133 5.787953 TTGAAAATCCAGAGCATGACAAA 57.212 34.783 0.00 0.00 0.00 2.83
133 134 5.787953 TTTGAAAATCCAGAGCATGACAA 57.212 34.783 0.00 0.00 0.00 3.18
134 135 5.957798 GATTTGAAAATCCAGAGCATGACA 58.042 37.500 0.00 0.00 39.04 3.58
146 147 6.322201 TGGAAGCTGGATAGGATTTGAAAATC 59.678 38.462 7.15 7.15 43.12 2.17
147 148 6.197168 TGGAAGCTGGATAGGATTTGAAAAT 58.803 36.000 0.00 0.00 0.00 1.82
148 149 5.579047 TGGAAGCTGGATAGGATTTGAAAA 58.421 37.500 0.00 0.00 0.00 2.29
149 150 5.044919 TCTGGAAGCTGGATAGGATTTGAAA 60.045 40.000 0.00 0.00 0.00 2.69
150 151 4.474651 TCTGGAAGCTGGATAGGATTTGAA 59.525 41.667 0.00 0.00 0.00 2.69
151 152 4.040047 TCTGGAAGCTGGATAGGATTTGA 58.960 43.478 0.00 0.00 0.00 2.69
152 153 4.387598 CTCTGGAAGCTGGATAGGATTTG 58.612 47.826 0.00 0.00 0.00 2.32
153 154 4.703379 CTCTGGAAGCTGGATAGGATTT 57.297 45.455 0.00 0.00 0.00 2.17
166 167 2.005451 CGTTGGAATCTGCTCTGGAAG 58.995 52.381 0.00 0.00 0.00 3.46
167 168 1.623311 TCGTTGGAATCTGCTCTGGAA 59.377 47.619 0.00 0.00 0.00 3.53
168 169 1.066858 GTCGTTGGAATCTGCTCTGGA 60.067 52.381 0.00 0.00 0.00 3.86
169 170 1.338105 TGTCGTTGGAATCTGCTCTGG 60.338 52.381 0.00 0.00 0.00 3.86
170 171 2.084610 TGTCGTTGGAATCTGCTCTG 57.915 50.000 0.00 0.00 0.00 3.35
171 172 3.340814 AATGTCGTTGGAATCTGCTCT 57.659 42.857 0.00 0.00 0.00 4.09
172 173 3.436704 TCAAATGTCGTTGGAATCTGCTC 59.563 43.478 0.00 0.00 0.00 4.26
173 174 3.411446 TCAAATGTCGTTGGAATCTGCT 58.589 40.909 0.00 0.00 0.00 4.24
174 175 3.829886 TCAAATGTCGTTGGAATCTGC 57.170 42.857 0.00 0.00 0.00 4.26
175 176 5.550232 TCATCAAATGTCGTTGGAATCTG 57.450 39.130 0.00 0.00 0.00 2.90
176 177 6.118170 AGATCATCAAATGTCGTTGGAATCT 58.882 36.000 0.00 0.00 0.00 2.40
177 178 6.369059 AGATCATCAAATGTCGTTGGAATC 57.631 37.500 0.00 0.00 0.00 2.52
178 179 6.764308 AAGATCATCAAATGTCGTTGGAAT 57.236 33.333 0.00 0.00 0.00 3.01
179 180 7.012327 GGATAAGATCATCAAATGTCGTTGGAA 59.988 37.037 0.00 0.00 0.00 3.53
180 181 6.483307 GGATAAGATCATCAAATGTCGTTGGA 59.517 38.462 0.00 0.00 0.00 3.53
181 182 6.260714 TGGATAAGATCATCAAATGTCGTTGG 59.739 38.462 0.00 0.00 0.00 3.77
182 183 7.250445 TGGATAAGATCATCAAATGTCGTTG 57.750 36.000 0.00 0.00 0.00 4.10
183 184 7.864108 TTGGATAAGATCATCAAATGTCGTT 57.136 32.000 0.00 0.00 0.00 3.85
184 185 7.864108 TTTGGATAAGATCATCAAATGTCGT 57.136 32.000 0.00 0.00 0.00 4.34
185 186 7.325338 GCATTTGGATAAGATCATCAAATGTCG 59.675 37.037 23.57 11.51 36.73 4.35
186 187 8.139350 TGCATTTGGATAAGATCATCAAATGTC 58.861 33.333 23.57 19.38 36.73 3.06
187 188 8.014070 TGCATTTGGATAAGATCATCAAATGT 57.986 30.769 23.57 3.70 36.73 2.71
188 189 9.140286 GATGCATTTGGATAAGATCATCAAATG 57.860 33.333 21.31 21.31 37.01 2.32
189 190 8.866093 TGATGCATTTGGATAAGATCATCAAAT 58.134 29.630 0.00 1.32 36.95 2.32
190 191 8.240267 TGATGCATTTGGATAAGATCATCAAA 57.760 30.769 0.00 0.00 36.95 2.69
191 192 7.826918 TGATGCATTTGGATAAGATCATCAA 57.173 32.000 0.00 0.00 36.95 2.57
192 193 7.668052 TCATGATGCATTTGGATAAGATCATCA 59.332 33.333 0.00 0.00 41.84 3.07
193 194 8.051901 TCATGATGCATTTGGATAAGATCATC 57.948 34.615 0.00 0.00 28.81 2.92
194 195 8.417273 TTCATGATGCATTTGGATAAGATCAT 57.583 30.769 0.00 0.00 30.89 2.45
195 196 7.826918 TTCATGATGCATTTGGATAAGATCA 57.173 32.000 0.00 0.00 0.00 2.92
196 197 9.706691 AATTTCATGATGCATTTGGATAAGATC 57.293 29.630 0.00 0.00 0.00 2.75
197 198 9.706691 GAATTTCATGATGCATTTGGATAAGAT 57.293 29.630 0.00 0.00 0.00 2.40
198 199 8.697292 TGAATTTCATGATGCATTTGGATAAGA 58.303 29.630 0.00 0.00 0.00 2.10
199 200 8.880878 TGAATTTCATGATGCATTTGGATAAG 57.119 30.769 0.00 0.00 0.00 1.73
200 201 9.100554 GTTGAATTTCATGATGCATTTGGATAA 57.899 29.630 0.00 0.00 0.00 1.75
201 202 8.258708 TGTTGAATTTCATGATGCATTTGGATA 58.741 29.630 0.00 0.00 0.00 2.59
202 203 7.106890 TGTTGAATTTCATGATGCATTTGGAT 58.893 30.769 0.00 0.00 0.00 3.41
203 204 6.465084 TGTTGAATTTCATGATGCATTTGGA 58.535 32.000 0.00 0.00 0.00 3.53
204 205 6.729391 TGTTGAATTTCATGATGCATTTGG 57.271 33.333 0.00 0.00 0.00 3.28
205 206 9.914923 CTTATGTTGAATTTCATGATGCATTTG 57.085 29.630 0.00 2.17 0.00 2.32
206 207 9.878667 TCTTATGTTGAATTTCATGATGCATTT 57.121 25.926 0.00 0.00 0.00 2.32
207 208 9.529325 CTCTTATGTTGAATTTCATGATGCATT 57.471 29.630 0.00 0.00 0.00 3.56
208 209 8.141909 CCTCTTATGTTGAATTTCATGATGCAT 58.858 33.333 0.00 0.00 0.00 3.96
209 210 7.339976 TCCTCTTATGTTGAATTTCATGATGCA 59.660 33.333 0.00 0.00 0.00 3.96
210 211 7.709947 TCCTCTTATGTTGAATTTCATGATGC 58.290 34.615 0.00 0.00 0.00 3.91
211 212 9.512435 GTTCCTCTTATGTTGAATTTCATGATG 57.488 33.333 0.00 0.00 0.00 3.07
212 213 9.471702 AGTTCCTCTTATGTTGAATTTCATGAT 57.528 29.630 0.00 0.00 0.00 2.45
213 214 8.868522 AGTTCCTCTTATGTTGAATTTCATGA 57.131 30.769 0.00 0.00 0.00 3.07
214 215 8.733458 TGAGTTCCTCTTATGTTGAATTTCATG 58.267 33.333 0.00 0.00 0.00 3.07
215 216 8.868522 TGAGTTCCTCTTATGTTGAATTTCAT 57.131 30.769 0.00 0.00 0.00 2.57
216 217 8.733458 CATGAGTTCCTCTTATGTTGAATTTCA 58.267 33.333 0.00 0.00 36.03 2.69
217 218 8.950210 TCATGAGTTCCTCTTATGTTGAATTTC 58.050 33.333 0.00 0.00 39.93 2.17
218 219 8.868522 TCATGAGTTCCTCTTATGTTGAATTT 57.131 30.769 0.00 0.00 39.93 1.82
219 220 7.066766 GCTCATGAGTTCCTCTTATGTTGAATT 59.933 37.037 23.38 0.00 39.93 2.17
220 221 6.541641 GCTCATGAGTTCCTCTTATGTTGAAT 59.458 38.462 23.38 0.00 39.93 2.57
221 222 5.877012 GCTCATGAGTTCCTCTTATGTTGAA 59.123 40.000 23.38 0.00 39.93 2.69
222 223 5.046376 TGCTCATGAGTTCCTCTTATGTTGA 60.046 40.000 23.38 0.00 39.93 3.18
223 224 5.181009 TGCTCATGAGTTCCTCTTATGTTG 58.819 41.667 23.38 0.00 39.93 3.33
224 225 5.426504 CTGCTCATGAGTTCCTCTTATGTT 58.573 41.667 23.38 0.00 39.93 2.71
225 226 4.682859 GCTGCTCATGAGTTCCTCTTATGT 60.683 45.833 23.38 0.00 39.93 2.29
226 227 3.808726 GCTGCTCATGAGTTCCTCTTATG 59.191 47.826 23.38 0.00 40.22 1.90
227 228 3.710677 AGCTGCTCATGAGTTCCTCTTAT 59.289 43.478 23.38 0.00 0.00 1.73
228 229 3.102972 AGCTGCTCATGAGTTCCTCTTA 58.897 45.455 23.38 0.85 0.00 2.10
229 230 1.907936 AGCTGCTCATGAGTTCCTCTT 59.092 47.619 23.38 1.56 0.00 2.85
230 231 1.207570 CAGCTGCTCATGAGTTCCTCT 59.792 52.381 23.38 10.97 0.00 3.69
231 232 1.654317 CAGCTGCTCATGAGTTCCTC 58.346 55.000 23.38 7.41 0.00 3.71
232 233 0.392729 GCAGCTGCTCATGAGTTCCT 60.393 55.000 31.33 13.59 38.21 3.36
233 234 0.675837 TGCAGCTGCTCATGAGTTCC 60.676 55.000 36.61 11.67 42.66 3.62
234 235 1.162698 TTGCAGCTGCTCATGAGTTC 58.837 50.000 36.61 12.62 42.66 3.01
235 236 1.612676 TTTGCAGCTGCTCATGAGTT 58.387 45.000 36.61 5.12 42.66 3.01
236 237 1.612676 TTTTGCAGCTGCTCATGAGT 58.387 45.000 36.61 0.84 42.66 3.41
237 238 2.163613 TCATTTTGCAGCTGCTCATGAG 59.836 45.455 36.61 18.84 42.66 2.90
238 239 2.164338 TCATTTTGCAGCTGCTCATGA 58.836 42.857 36.61 32.07 42.66 3.07
239 240 2.647529 TCATTTTGCAGCTGCTCATG 57.352 45.000 36.61 30.67 42.66 3.07
240 241 3.024547 AGATCATTTTGCAGCTGCTCAT 58.975 40.909 36.61 22.91 42.66 2.90
241 242 2.163613 CAGATCATTTTGCAGCTGCTCA 59.836 45.455 36.61 22.14 42.66 4.26
242 243 2.479730 CCAGATCATTTTGCAGCTGCTC 60.480 50.000 36.61 24.15 42.66 4.26
243 244 1.476891 CCAGATCATTTTGCAGCTGCT 59.523 47.619 36.61 17.15 42.66 4.24
244 245 1.203994 ACCAGATCATTTTGCAGCTGC 59.796 47.619 31.89 31.89 42.50 5.25
245 246 3.057104 TCAACCAGATCATTTTGCAGCTG 60.057 43.478 10.11 10.11 0.00 4.24
246 247 3.159472 TCAACCAGATCATTTTGCAGCT 58.841 40.909 0.00 0.00 0.00 4.24
247 248 3.508762 CTCAACCAGATCATTTTGCAGC 58.491 45.455 0.00 0.00 0.00 5.25
248 249 3.119245 CCCTCAACCAGATCATTTTGCAG 60.119 47.826 0.00 0.00 0.00 4.41
249 250 2.827322 CCCTCAACCAGATCATTTTGCA 59.173 45.455 0.00 0.00 0.00 4.08
250 251 2.417787 GCCCTCAACCAGATCATTTTGC 60.418 50.000 0.00 0.00 0.00 3.68
251 252 2.827322 TGCCCTCAACCAGATCATTTTG 59.173 45.455 0.00 0.00 0.00 2.44
252 253 3.173953 TGCCCTCAACCAGATCATTTT 57.826 42.857 0.00 0.00 0.00 1.82
253 254 2.905415 TGCCCTCAACCAGATCATTT 57.095 45.000 0.00 0.00 0.00 2.32
254 255 3.393426 AATGCCCTCAACCAGATCATT 57.607 42.857 0.00 0.00 0.00 2.57
255 256 3.294214 GAAATGCCCTCAACCAGATCAT 58.706 45.455 0.00 0.00 0.00 2.45
256 257 2.041485 TGAAATGCCCTCAACCAGATCA 59.959 45.455 0.00 0.00 0.00 2.92
257 258 2.726821 TGAAATGCCCTCAACCAGATC 58.273 47.619 0.00 0.00 0.00 2.75
258 259 2.905415 TGAAATGCCCTCAACCAGAT 57.095 45.000 0.00 0.00 0.00 2.90
259 260 2.905415 ATGAAATGCCCTCAACCAGA 57.095 45.000 0.00 0.00 0.00 3.86
260 261 3.319972 CCATATGAAATGCCCTCAACCAG 59.680 47.826 3.65 0.00 0.00 4.00
261 262 3.053019 TCCATATGAAATGCCCTCAACCA 60.053 43.478 3.65 0.00 0.00 3.67
262 263 3.565307 TCCATATGAAATGCCCTCAACC 58.435 45.455 3.65 0.00 0.00 3.77
263 264 5.596836 TTTCCATATGAAATGCCCTCAAC 57.403 39.130 3.65 0.00 38.04 3.18
264 265 6.811634 ATTTTCCATATGAAATGCCCTCAA 57.188 33.333 3.65 0.00 42.38 3.02
265 266 6.461370 CGAATTTTCCATATGAAATGCCCTCA 60.461 38.462 3.65 0.00 42.38 3.86
266 267 5.922544 CGAATTTTCCATATGAAATGCCCTC 59.077 40.000 3.65 0.00 42.38 4.30
267 268 5.598005 TCGAATTTTCCATATGAAATGCCCT 59.402 36.000 3.65 0.00 42.38 5.19
268 269 5.841810 TCGAATTTTCCATATGAAATGCCC 58.158 37.500 3.65 0.00 42.38 5.36
269 270 6.756074 TGTTCGAATTTTCCATATGAAATGCC 59.244 34.615 3.65 0.00 42.38 4.40
270 271 7.754069 TGTTCGAATTTTCCATATGAAATGC 57.246 32.000 3.65 1.24 42.38 3.56
271 272 9.304731 ACATGTTCGAATTTTCCATATGAAATG 57.695 29.630 3.65 0.00 42.38 2.32
272 273 9.304731 CACATGTTCGAATTTTCCATATGAAAT 57.695 29.630 3.65 0.32 42.38 2.17
273 274 7.275341 GCACATGTTCGAATTTTCCATATGAAA 59.725 33.333 3.65 0.00 41.18 2.69
274 275 6.751425 GCACATGTTCGAATTTTCCATATGAA 59.249 34.615 3.65 0.00 0.00 2.57
275 276 6.095300 AGCACATGTTCGAATTTTCCATATGA 59.905 34.615 3.65 0.00 0.00 2.15
276 277 6.267817 AGCACATGTTCGAATTTTCCATATG 58.732 36.000 0.00 0.15 0.00 1.78
277 278 6.455360 AGCACATGTTCGAATTTTCCATAT 57.545 33.333 0.00 0.00 0.00 1.78
278 279 5.879237 GAGCACATGTTCGAATTTTCCATA 58.121 37.500 0.00 0.00 0.00 2.74
279 280 4.737054 GAGCACATGTTCGAATTTTCCAT 58.263 39.130 0.00 0.00 0.00 3.41
280 281 4.159377 GAGCACATGTTCGAATTTTCCA 57.841 40.909 0.00 0.00 0.00 3.53
290 291 3.987868 TCAACTTAGTCGAGCACATGTTC 59.012 43.478 0.00 0.00 0.00 3.18
291 292 3.990092 TCAACTTAGTCGAGCACATGTT 58.010 40.909 0.00 0.00 0.00 2.71
292 293 3.660501 TCAACTTAGTCGAGCACATGT 57.339 42.857 0.00 0.00 0.00 3.21
293 294 3.990469 AGTTCAACTTAGTCGAGCACATG 59.010 43.478 0.00 0.00 0.00 3.21
294 295 4.258702 AGTTCAACTTAGTCGAGCACAT 57.741 40.909 0.00 0.00 0.00 3.21
295 296 3.728076 AGTTCAACTTAGTCGAGCACA 57.272 42.857 0.00 0.00 0.00 4.57
296 297 6.707599 AAATAGTTCAACTTAGTCGAGCAC 57.292 37.500 0.00 0.00 0.00 4.40
297 298 7.724305 AAAAATAGTTCAACTTAGTCGAGCA 57.276 32.000 0.00 0.00 0.00 4.26
366 367 9.853555 CTTGAAGGTAAATATTACAATGCAACA 57.146 29.630 0.00 0.00 0.00 3.33
370 371 9.185192 GCATCTTGAAGGTAAATATTACAATGC 57.815 33.333 0.00 0.00 0.00 3.56
381 382 9.077885 ACAATTCTTAAGCATCTTGAAGGTAAA 57.922 29.630 0.00 0.00 0.00 2.01
382 383 8.514594 CACAATTCTTAAGCATCTTGAAGGTAA 58.485 33.333 0.00 0.00 0.00 2.85
383 384 7.665559 ACACAATTCTTAAGCATCTTGAAGGTA 59.334 33.333 0.00 0.00 0.00 3.08
384 385 6.491403 ACACAATTCTTAAGCATCTTGAAGGT 59.509 34.615 0.00 0.00 0.00 3.50
385 386 6.917533 ACACAATTCTTAAGCATCTTGAAGG 58.082 36.000 0.00 0.00 0.00 3.46
386 387 7.864379 ACAACACAATTCTTAAGCATCTTGAAG 59.136 33.333 0.00 0.00 0.00 3.02
387 388 7.715657 ACAACACAATTCTTAAGCATCTTGAA 58.284 30.769 0.00 0.00 0.00 2.69
388 389 7.275888 ACAACACAATTCTTAAGCATCTTGA 57.724 32.000 0.00 0.00 0.00 3.02
389 390 7.935338 AACAACACAATTCTTAAGCATCTTG 57.065 32.000 0.00 1.73 0.00 3.02
391 392 9.846248 GATAAACAACACAATTCTTAAGCATCT 57.154 29.630 0.00 0.00 0.00 2.90
392 393 9.846248 AGATAAACAACACAATTCTTAAGCATC 57.154 29.630 0.00 0.00 0.00 3.91
405 406 9.645059 TGAAAACAATCAAAGATAAACAACACA 57.355 25.926 0.00 0.00 0.00 3.72
440 441 9.719355 TGCTCTCAGTTTGTTATTTTCTATACA 57.281 29.630 0.00 0.00 0.00 2.29
443 444 9.678260 ATCTGCTCTCAGTTTGTTATTTTCTAT 57.322 29.630 0.00 0.00 41.10 1.98
445 446 7.992754 ATCTGCTCTCAGTTTGTTATTTTCT 57.007 32.000 0.00 0.00 41.10 2.52
449 450 9.453572 TCAAATATCTGCTCTCAGTTTGTTATT 57.546 29.630 0.00 0.00 41.10 1.40
450 451 8.887717 GTCAAATATCTGCTCTCAGTTTGTTAT 58.112 33.333 0.00 0.00 41.10 1.89
451 452 7.063426 CGTCAAATATCTGCTCTCAGTTTGTTA 59.937 37.037 0.00 0.00 41.10 2.41
452 453 6.128445 CGTCAAATATCTGCTCTCAGTTTGTT 60.128 38.462 0.00 0.00 41.10 2.83
453 454 5.349817 CGTCAAATATCTGCTCTCAGTTTGT 59.650 40.000 0.00 0.00 41.10 2.83
454 455 5.726138 GCGTCAAATATCTGCTCTCAGTTTG 60.726 44.000 0.00 0.00 41.10 2.93
455 456 4.331168 GCGTCAAATATCTGCTCTCAGTTT 59.669 41.667 0.00 0.00 41.10 2.66
456 457 3.868077 GCGTCAAATATCTGCTCTCAGTT 59.132 43.478 0.00 0.00 41.10 3.16
457 458 3.452474 GCGTCAAATATCTGCTCTCAGT 58.548 45.455 0.00 0.00 41.10 3.41
458 459 2.799412 GGCGTCAAATATCTGCTCTCAG 59.201 50.000 0.00 0.00 41.67 3.35
459 460 2.432146 AGGCGTCAAATATCTGCTCTCA 59.568 45.455 0.00 0.00 0.00 3.27
460 461 2.799412 CAGGCGTCAAATATCTGCTCTC 59.201 50.000 0.00 0.00 0.00 3.20
461 462 2.831333 CAGGCGTCAAATATCTGCTCT 58.169 47.619 0.00 0.00 0.00 4.09
462 463 1.262683 GCAGGCGTCAAATATCTGCTC 59.737 52.381 0.00 0.00 45.03 4.26
463 464 1.303309 GCAGGCGTCAAATATCTGCT 58.697 50.000 0.00 0.00 45.03 4.24
464 465 0.041839 CGCAGGCGTCAAATATCTGC 60.042 55.000 5.34 0.00 45.01 4.26
465 466 0.583438 CCGCAGGCGTCAAATATCTG 59.417 55.000 13.07 0.00 46.14 2.90
466 467 2.992089 CCGCAGGCGTCAAATATCT 58.008 52.632 13.07 0.00 46.14 1.98
479 480 1.026718 GGGAGGTCATTCAACCGCAG 61.027 60.000 0.00 0.00 44.49 5.18
480 481 1.002624 GGGAGGTCATTCAACCGCA 60.003 57.895 0.00 0.00 44.49 5.69
481 482 1.749258 GGGGAGGTCATTCAACCGC 60.749 63.158 0.00 0.00 44.49 5.68
482 483 1.077716 GGGGGAGGTCATTCAACCG 60.078 63.158 0.00 0.00 44.49 4.44
497 498 0.773644 CCATGGACAAGGATAGGGGG 59.226 60.000 5.56 0.00 0.00 5.40
498 499 1.421646 GTCCATGGACAAGGATAGGGG 59.578 57.143 35.21 0.00 44.02 4.79
499 500 2.938956 GTCCATGGACAAGGATAGGG 57.061 55.000 35.21 0.00 44.02 3.53
515 516 1.933853 GAATACATGCTGGACGTGTCC 59.066 52.381 12.17 12.17 45.71 4.02
516 517 1.588404 CGAATACATGCTGGACGTGTC 59.412 52.381 0.00 0.00 45.71 3.67
518 519 1.640428 ACGAATACATGCTGGACGTG 58.360 50.000 0.00 0.00 41.41 4.49
519 520 2.686405 TCTACGAATACATGCTGGACGT 59.314 45.455 0.00 0.00 36.52 4.34
520 521 3.043586 GTCTACGAATACATGCTGGACG 58.956 50.000 0.00 0.00 0.00 4.79
521 522 4.041740 TGTCTACGAATACATGCTGGAC 57.958 45.455 0.00 0.00 0.00 4.02
522 523 4.937201 ATGTCTACGAATACATGCTGGA 57.063 40.909 0.00 0.00 35.06 3.86
523 524 5.332581 CGAAATGTCTACGAATACATGCTGG 60.333 44.000 0.00 0.00 36.47 4.85
524 525 5.458779 TCGAAATGTCTACGAATACATGCTG 59.541 40.000 0.00 0.00 36.47 4.41
525 526 5.588240 TCGAAATGTCTACGAATACATGCT 58.412 37.500 0.00 0.00 36.47 3.79
526 527 5.883328 TCGAAATGTCTACGAATACATGC 57.117 39.130 0.00 0.00 36.47 4.06
527 528 7.379797 ACTCATCGAAATGTCTACGAATACATG 59.620 37.037 0.00 0.00 39.38 3.21
528 529 7.426410 ACTCATCGAAATGTCTACGAATACAT 58.574 34.615 0.00 0.00 39.38 2.29
529 530 6.792326 ACTCATCGAAATGTCTACGAATACA 58.208 36.000 0.00 0.00 39.38 2.29
530 531 7.681125 AACTCATCGAAATGTCTACGAATAC 57.319 36.000 0.00 0.00 39.38 1.89
531 532 7.909777 GAACTCATCGAAATGTCTACGAATA 57.090 36.000 0.00 0.00 39.38 1.75
532 533 6.814076 GAACTCATCGAAATGTCTACGAAT 57.186 37.500 0.00 0.00 39.38 3.34
547 548 4.084013 ACGAATCACCAAAACGAACTCATC 60.084 41.667 0.00 0.00 0.00 2.92
548 549 3.813166 ACGAATCACCAAAACGAACTCAT 59.187 39.130 0.00 0.00 0.00 2.90
549 550 3.001838 CACGAATCACCAAAACGAACTCA 59.998 43.478 0.00 0.00 0.00 3.41
550 551 3.001939 ACACGAATCACCAAAACGAACTC 59.998 43.478 0.00 0.00 0.00 3.01
551 552 2.940410 ACACGAATCACCAAAACGAACT 59.060 40.909 0.00 0.00 0.00 3.01
554 555 2.032302 CCAACACGAATCACCAAAACGA 59.968 45.455 0.00 0.00 0.00 3.85
560 561 2.217750 CAACTCCAACACGAATCACCA 58.782 47.619 0.00 0.00 0.00 4.17
570 571 1.131638 AGCTGAGGACAACTCCAACA 58.868 50.000 0.00 0.00 46.01 3.33
582 583 6.183360 CGAAGAGTTCTTTTATGAAGCTGAGG 60.183 42.308 0.00 0.00 36.11 3.86
583 584 6.671879 GCGAAGAGTTCTTTTATGAAGCTGAG 60.672 42.308 0.00 0.00 36.11 3.35
585 586 5.121454 AGCGAAGAGTTCTTTTATGAAGCTG 59.879 40.000 0.00 0.00 36.11 4.24
593 594 5.470047 AAGAGGAGCGAAGAGTTCTTTTA 57.530 39.130 0.00 0.00 36.11 1.52
597 598 1.822371 GGAAGAGGAGCGAAGAGTTCT 59.178 52.381 0.00 0.00 0.00 3.01
598 599 1.134936 GGGAAGAGGAGCGAAGAGTTC 60.135 57.143 0.00 0.00 0.00 3.01
601 602 0.174617 GTGGGAAGAGGAGCGAAGAG 59.825 60.000 0.00 0.00 0.00 2.85
602 603 0.541998 TGTGGGAAGAGGAGCGAAGA 60.542 55.000 0.00 0.00 0.00 2.87
613 614 1.178534 ACATGGGCGTTTGTGGGAAG 61.179 55.000 0.00 0.00 0.00 3.46
617 618 1.216122 CAAAACATGGGCGTTTGTGG 58.784 50.000 0.00 0.00 39.04 4.17
624 625 1.606668 ACTACACACAAAACATGGGCG 59.393 47.619 0.00 0.00 35.04 6.13
625 626 3.067461 TCAACTACACACAAAACATGGGC 59.933 43.478 0.00 0.00 35.04 5.36
626 627 4.909696 TCAACTACACACAAAACATGGG 57.090 40.909 0.00 0.00 38.89 4.00
627 628 6.502652 TGATTCAACTACACACAAAACATGG 58.497 36.000 0.00 0.00 0.00 3.66
628 629 7.166307 CACTGATTCAACTACACACAAAACATG 59.834 37.037 0.00 0.00 0.00 3.21
629 630 7.195646 CACTGATTCAACTACACACAAAACAT 58.804 34.615 0.00 0.00 0.00 2.71
630 631 6.404184 CCACTGATTCAACTACACACAAAACA 60.404 38.462 0.00 0.00 0.00 2.83
631 632 5.971202 CCACTGATTCAACTACACACAAAAC 59.029 40.000 0.00 0.00 0.00 2.43
632 633 5.883115 TCCACTGATTCAACTACACACAAAA 59.117 36.000 0.00 0.00 0.00 2.44
670 679 2.296792 TGGTGTGGTCAATGTCAACTG 58.703 47.619 0.00 0.00 0.00 3.16
689 698 9.941664 GACTGATTTGATTCCTACAATACATTG 57.058 33.333 0.37 0.37 43.26 2.82
696 705 6.037786 ACTCGACTGATTTGATTCCTACAA 57.962 37.500 0.00 0.00 0.00 2.41
727 741 8.019669 TGCTAAACGAAGAACTAGTTGTAGTAG 58.980 37.037 14.14 10.37 38.66 2.57
787 801 7.426929 AAGTTTATCATGTCAACTGTGAGTC 57.573 36.000 7.42 0.00 33.27 3.36
806 820 2.646250 GCACGTTCGCAATGTAAGTTT 58.354 42.857 0.00 0.00 0.00 2.66
855 869 1.279271 AGTATGGTTGACCTGTCCAGC 59.721 52.381 1.34 0.00 36.82 4.85
858 872 2.158943 GCCTAGTATGGTTGACCTGTCC 60.159 54.545 1.34 0.00 36.82 4.02
877 891 5.653507 TGATTTGAGTTTGCTAATGATGCC 58.346 37.500 0.00 0.00 0.00 4.40
947 962 0.179119 GCTAATGGCAGCCAAGCTTG 60.179 55.000 25.39 19.93 36.40 4.01
975 990 2.386661 ATTTGCTCGGTGTAGTGGAG 57.613 50.000 0.00 0.00 0.00 3.86
977 992 4.634004 TGAATAATTTGCTCGGTGTAGTGG 59.366 41.667 0.00 0.00 0.00 4.00
1043 1079 1.674221 GGAAGACATCGCAGCAGAAGT 60.674 52.381 0.00 0.00 0.00 3.01
1317 1365 2.044555 CAGGCCCTCGTAGTCGTGA 61.045 63.158 0.00 0.00 38.33 4.35
1683 1949 2.217038 GCTCTCACCACCTCCACCA 61.217 63.158 0.00 0.00 0.00 4.17
1809 2075 1.908066 GCGCGAACGTCTCCCATTTT 61.908 55.000 12.10 0.00 42.83 1.82
2217 2485 1.902508 GTGAAGGAGTCTGGGATGACA 59.097 52.381 0.00 0.00 39.27 3.58
2329 2603 1.520787 CGTACAGGCCGTTGATCCC 60.521 63.158 5.57 0.00 0.00 3.85
2362 2636 0.886490 CTCGGGTTGCTGCTCACTTT 60.886 55.000 0.00 0.00 0.00 2.66
2364 2638 2.345244 CTCGGGTTGCTGCTCACT 59.655 61.111 0.00 0.00 0.00 3.41
2446 2720 4.233635 CCCGCTCTCGTACGTCGG 62.234 72.222 23.21 23.21 40.32 4.79
2523 2797 2.758327 TCGTCGGGATCCACCTGG 60.758 66.667 15.23 0.00 44.73 4.45
2537 2811 1.199558 GCTCGTTCCTGAAGTAGTCGT 59.800 52.381 0.00 0.00 0.00 4.34
2568 2842 0.394899 CCTAGACGGGTAGGAACGGT 60.395 60.000 6.51 0.00 42.18 4.83
2756 3041 6.053632 ACTTCATCCACTGACATGTAATCA 57.946 37.500 0.00 0.00 32.17 2.57
2787 3072 4.497507 GGCTGGACAAAAGCGAATTATACC 60.498 45.833 0.00 0.00 41.78 2.73
2906 4981 1.339631 TGGGTCTATTTGGTCCTTGCG 60.340 52.381 0.00 0.00 0.00 4.85
2911 4986 1.682087 GGCAGTGGGTCTATTTGGTCC 60.682 57.143 0.00 0.00 0.00 4.46
3010 5085 1.136057 CATTCGATGGCGCATGAGATG 60.136 52.381 10.83 1.98 42.49 2.90
3057 5134 0.738389 CGGCCGCTTTATTGGTTCAT 59.262 50.000 14.67 0.00 0.00 2.57
3058 5135 1.928706 GCGGCCGCTTTATTGGTTCA 61.929 55.000 41.71 0.00 38.26 3.18
3072 5149 0.178068 TCACTTTATGAGAGGCGGCC 59.822 55.000 12.11 12.11 31.91 6.13
3095 5172 8.940397 TCCTTTATTTGATCCTGAAAAGAAGT 57.060 30.769 8.48 0.00 0.00 3.01
3096 5173 8.465201 CCTCCTTTATTTGATCCTGAAAAGAAG 58.535 37.037 8.48 0.38 0.00 2.85
3097 5174 8.170061 TCCTCCTTTATTTGATCCTGAAAAGAA 58.830 33.333 8.48 0.00 0.00 2.52
3099 5176 7.613411 AGTCCTCCTTTATTTGATCCTGAAAAG 59.387 37.037 0.00 0.00 0.00 2.27
3100 5177 7.470192 AGTCCTCCTTTATTTGATCCTGAAAA 58.530 34.615 0.00 0.00 0.00 2.29
3101 5178 7.032598 AGTCCTCCTTTATTTGATCCTGAAA 57.967 36.000 0.00 0.00 0.00 2.69
3102 5179 6.642733 AGTCCTCCTTTATTTGATCCTGAA 57.357 37.500 0.00 0.00 0.00 3.02
3103 5180 6.012508 ACAAGTCCTCCTTTATTTGATCCTGA 60.013 38.462 0.00 0.00 0.00 3.86
3104 5181 6.183347 ACAAGTCCTCCTTTATTTGATCCTG 58.817 40.000 0.00 0.00 0.00 3.86
3112 5189 6.542821 TGTGATCAACAAGTCCTCCTTTATT 58.457 36.000 0.00 0.00 35.24 1.40
3144 5221 8.306761 GGATATGAGAAAACAAGGACAAATTGT 58.693 33.333 0.00 0.00 42.55 2.71
3163 5240 7.428020 GCATGTTCTAAAGCAAATGGATATGA 58.572 34.615 0.00 0.00 0.00 2.15
3191 5268 7.342799 ACAAGGGCAAATTGACTATATGTTCAT 59.657 33.333 0.00 0.00 0.00 2.57
3202 5413 6.536941 TCTTGTAAAAACAAGGGCAAATTGAC 59.463 34.615 16.01 0.00 45.15 3.18
3289 5849 5.939447 TGATGTTCATTGGCATGGATAGTA 58.061 37.500 0.00 0.00 0.00 1.82
3292 5852 5.892686 TCTTTGATGTTCATTGGCATGGATA 59.107 36.000 0.00 0.00 0.00 2.59
3293 5853 4.712829 TCTTTGATGTTCATTGGCATGGAT 59.287 37.500 0.00 0.00 0.00 3.41
3307 5867 4.070716 CTCAAGCTGTCCTTCTTTGATGT 58.929 43.478 0.00 0.00 0.00 3.06
3322 5882 9.905171 GAGTTTCAAATTTATCTTTCTCAAGCT 57.095 29.630 0.00 0.00 0.00 3.74
3351 8668 6.198687 TGACGATGTCAAAAATCAGTTGTTC 58.801 36.000 0.00 0.00 39.78 3.18
3377 8695 4.603131 TGGAGCCATTCTATTCTGCTTTT 58.397 39.130 0.00 0.00 31.23 2.27
3440 8758 4.670227 AGAAGATCACTTGCTTTTACGC 57.330 40.909 0.00 0.00 36.39 4.42
3545 9962 0.319297 CATGCCGCAGATCGATGAGA 60.319 55.000 0.54 0.00 41.67 3.27
3566 9983 1.541310 TAGTTCAGTGACGGGGCAGG 61.541 60.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.