Multiple sequence alignment - TraesCS3B01G131900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G131900 chr3B 100.000 4224 0 0 1 4224 114146888 114142665 0.000000e+00 7801.0
1 TraesCS3B01G131900 chr3B 97.110 173 4 1 1 173 201616493 201616664 1.490000e-74 291.0
2 TraesCS3B01G131900 chr3B 96.894 161 4 1 13 173 524468319 524468160 6.960000e-68 268.0
3 TraesCS3B01G131900 chr3B 100.000 30 0 0 3633 3662 114143226 114143197 5.900000e-04 56.5
4 TraesCS3B01G131900 chr3B 100.000 30 0 0 3663 3692 114143256 114143227 5.900000e-04 56.5
5 TraesCS3B01G131900 chr3A 91.316 2234 124 32 1462 3662 79400918 79403114 0.000000e+00 2987.0
6 TraesCS3B01G131900 chr3A 86.293 1284 90 38 165 1415 79399688 79400918 0.000000e+00 1317.0
7 TraesCS3B01G131900 chr3A 95.552 562 25 0 3663 4224 79403085 79403646 0.000000e+00 900.0
8 TraesCS3B01G131900 chr3A 86.709 158 16 2 2437 2593 585936700 585936547 2.020000e-38 171.0
9 TraesCS3B01G131900 chr3D 92.284 1646 83 21 2032 3662 67711629 67713245 0.000000e+00 2296.0
10 TraesCS3B01G131900 chr3D 88.042 1823 129 40 241 2035 67709757 67711518 0.000000e+00 2076.0
11 TraesCS3B01G131900 chr3D 94.840 562 29 0 3663 4224 67713216 67713777 0.000000e+00 878.0
12 TraesCS3B01G131900 chr2B 91.806 1318 66 11 2071 3366 113326862 113325565 0.000000e+00 1797.0
13 TraesCS3B01G131900 chr2B 92.045 880 54 8 951 1822 113327967 113327096 0.000000e+00 1223.0
14 TraesCS3B01G131900 chr2B 97.546 163 4 0 1 163 1452884 1452722 3.220000e-71 279.0
15 TraesCS3B01G131900 chr2D 91.705 1314 70 10 2071 3362 74280487 74279191 0.000000e+00 1786.0
16 TraesCS3B01G131900 chr2D 91.741 896 51 13 935 1822 74281995 74281115 0.000000e+00 1223.0
17 TraesCS3B01G131900 chr2D 89.655 116 10 2 1832 1947 74280780 74280667 3.400000e-31 147.0
18 TraesCS3B01G131900 chr2D 85.393 89 12 1 607 694 74282566 74282478 1.620000e-14 91.6
19 TraesCS3B01G131900 chr2A 91.853 896 52 12 935 1822 73557078 73556196 0.000000e+00 1230.0
20 TraesCS3B01G131900 chr2A 87.430 891 61 15 2704 3561 73555072 73554200 0.000000e+00 977.0
21 TraesCS3B01G131900 chr2A 94.577 461 25 0 2077 2537 73555695 73555235 0.000000e+00 713.0
22 TraesCS3B01G131900 chr2A 80.618 712 84 32 2307 3008 383426662 383425995 6.300000e-138 501.0
23 TraesCS3B01G131900 chr2A 95.238 105 3 2 69 173 53948986 53948884 9.400000e-37 165.0
24 TraesCS3B01G131900 chr2A 86.301 73 7 3 470 542 73557799 73557730 4.530000e-10 76.8
25 TraesCS3B01G131900 chr6B 80.172 812 114 32 2181 2983 116891589 116892362 7.930000e-157 564.0
26 TraesCS3B01G131900 chr6B 78.839 827 124 31 2181 2983 28008629 28009428 1.050000e-140 510.0
27 TraesCS3B01G131900 chr4A 77.327 591 84 33 2431 3006 151642121 151642676 1.910000e-78 303.0
28 TraesCS3B01G131900 chr4A 88.889 72 4 1 296 367 662286502 662286435 7.520000e-13 86.1
29 TraesCS3B01G131900 chr5B 96.532 173 5 1 1 173 44990438 44990609 6.910000e-73 285.0
30 TraesCS3B01G131900 chr5B 96.532 173 5 1 1 173 127809970 127810141 6.910000e-73 285.0
31 TraesCS3B01G131900 chr1B 95.954 173 6 1 1 173 135052415 135052244 3.220000e-71 279.0
32 TraesCS3B01G131900 chr1B 95.376 173 6 2 1 173 638730175 638730345 1.500000e-69 274.0
33 TraesCS3B01G131900 chr1B 90.411 73 5 2 295 367 355408356 355408286 1.250000e-15 95.3
34 TraesCS3B01G131900 chr1D 96.296 81 3 0 1 81 51912584 51912504 2.650000e-27 134.0
35 TraesCS3B01G131900 chr1D 97.436 78 2 0 1 78 254527143 254527220 2.650000e-27 134.0
36 TraesCS3B01G131900 chr1D 89.552 67 3 1 301 367 410795983 410795921 9.730000e-12 82.4
37 TraesCS3B01G131900 chr1A 90.411 73 5 2 295 367 331272282 331272212 1.250000e-15 95.3
38 TraesCS3B01G131900 chr4B 90.278 72 2 3 301 367 131352098 131352027 5.820000e-14 89.8
39 TraesCS3B01G131900 chr4B 88.312 77 4 2 296 367 131352010 131352086 2.090000e-13 87.9
40 TraesCS3B01G131900 chr5A 88.000 75 7 2 296 368 521937821 521937895 2.090000e-13 87.9
41 TraesCS3B01G131900 chr6A 87.013 77 6 1 291 367 94067121 94067049 2.710000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G131900 chr3B 114142665 114146888 4223 True 2638.000000 7801 100.000000 1 4224 3 chr3B.!!$R2 4223
1 TraesCS3B01G131900 chr3A 79399688 79403646 3958 False 1734.666667 2987 91.053667 165 4224 3 chr3A.!!$F1 4059
2 TraesCS3B01G131900 chr3D 67709757 67713777 4020 False 1750.000000 2296 91.722000 241 4224 3 chr3D.!!$F1 3983
3 TraesCS3B01G131900 chr2B 113325565 113327967 2402 True 1510.000000 1797 91.925500 951 3366 2 chr2B.!!$R2 2415
4 TraesCS3B01G131900 chr2D 74279191 74282566 3375 True 811.900000 1786 89.623500 607 3362 4 chr2D.!!$R1 2755
5 TraesCS3B01G131900 chr2A 73554200 73557799 3599 True 749.200000 1230 90.040250 470 3561 4 chr2A.!!$R3 3091
6 TraesCS3B01G131900 chr2A 383425995 383426662 667 True 501.000000 501 80.618000 2307 3008 1 chr2A.!!$R2 701
7 TraesCS3B01G131900 chr6B 116891589 116892362 773 False 564.000000 564 80.172000 2181 2983 1 chr6B.!!$F2 802
8 TraesCS3B01G131900 chr6B 28008629 28009428 799 False 510.000000 510 78.839000 2181 2983 1 chr6B.!!$F1 802
9 TraesCS3B01G131900 chr4A 151642121 151642676 555 False 303.000000 303 77.327000 2431 3006 1 chr4A.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.033504 GAGACAACCTGGCGAACTGA 59.966 55.0 0.00 0.00 0.00 3.41 F
250 265 0.035725 TCTGTGCTGGCCATCTTCTG 60.036 55.0 5.51 4.51 0.00 3.02 F
698 777 0.101399 CCCTGAAGACGATCTCACCG 59.899 60.0 0.00 0.00 0.00 4.94 F
700 779 0.526524 CTGAAGACGATCTCACCGGC 60.527 60.0 0.00 0.00 34.76 6.13 F
1571 1955 0.540923 GAGGATGAGGCTTGCAGAGT 59.459 55.0 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 1996 1.293062 AATCAGAGCCTGTGATGGGT 58.707 50.000 4.96 0.00 40.97 4.51 R
1927 2644 3.618150 CCTTTTTGCCAGAACACTGTTTG 59.382 43.478 0.00 0.00 0.00 2.93 R
2403 3318 5.155278 TGTTGTACACCAGTATTGTAGGG 57.845 43.478 0.00 0.00 30.01 3.53 R
2526 3442 5.925969 ACCACACAAAAGAAAACTTGAACTG 59.074 36.000 0.00 0.00 0.00 3.16 R
3489 4529 1.298264 TGCAGTTTGCTTCAACGCG 60.298 52.632 3.53 3.53 45.31 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.307379 AAGAGACAACCTGGCGAAC 57.693 52.632 0.00 0.00 0.00 3.95
19 20 0.759346 AAGAGACAACCTGGCGAACT 59.241 50.000 0.00 0.00 0.00 3.01
20 21 0.034059 AGAGACAACCTGGCGAACTG 59.966 55.000 0.00 0.00 0.00 3.16
21 22 0.033504 GAGACAACCTGGCGAACTGA 59.966 55.000 0.00 0.00 0.00 3.41
22 23 0.468226 AGACAACCTGGCGAACTGAA 59.532 50.000 0.00 0.00 0.00 3.02
23 24 1.134220 AGACAACCTGGCGAACTGAAA 60.134 47.619 0.00 0.00 0.00 2.69
24 25 1.002792 GACAACCTGGCGAACTGAAAC 60.003 52.381 0.00 0.00 0.00 2.78
25 26 1.021202 CAACCTGGCGAACTGAAACA 58.979 50.000 0.00 0.00 0.00 2.83
26 27 1.608590 CAACCTGGCGAACTGAAACAT 59.391 47.619 0.00 0.00 0.00 2.71
27 28 1.523758 ACCTGGCGAACTGAAACATC 58.476 50.000 0.00 0.00 0.00 3.06
28 29 1.072331 ACCTGGCGAACTGAAACATCT 59.928 47.619 0.00 0.00 0.00 2.90
29 30 2.154462 CCTGGCGAACTGAAACATCTT 58.846 47.619 0.00 0.00 0.00 2.40
30 31 3.244422 ACCTGGCGAACTGAAACATCTTA 60.244 43.478 0.00 0.00 0.00 2.10
31 32 3.372206 CCTGGCGAACTGAAACATCTTAG 59.628 47.826 0.00 0.00 0.00 2.18
32 33 3.997021 CTGGCGAACTGAAACATCTTAGT 59.003 43.478 0.00 0.00 0.00 2.24
33 34 5.142061 TGGCGAACTGAAACATCTTAGTA 57.858 39.130 0.00 0.00 0.00 1.82
34 35 5.168569 TGGCGAACTGAAACATCTTAGTAG 58.831 41.667 0.00 0.00 0.00 2.57
35 36 4.033014 GGCGAACTGAAACATCTTAGTAGC 59.967 45.833 0.00 0.00 0.00 3.58
36 37 4.033014 GCGAACTGAAACATCTTAGTAGCC 59.967 45.833 0.00 0.00 0.00 3.93
37 38 5.168569 CGAACTGAAACATCTTAGTAGCCA 58.831 41.667 0.00 0.00 0.00 4.75
38 39 5.289675 CGAACTGAAACATCTTAGTAGCCAG 59.710 44.000 0.00 0.00 0.00 4.85
39 40 6.360370 AACTGAAACATCTTAGTAGCCAGA 57.640 37.500 0.00 0.00 0.00 3.86
40 41 5.971763 ACTGAAACATCTTAGTAGCCAGAG 58.028 41.667 0.00 0.00 0.00 3.35
41 42 5.105146 ACTGAAACATCTTAGTAGCCAGAGG 60.105 44.000 0.00 0.00 0.00 3.69
42 43 5.023452 TGAAACATCTTAGTAGCCAGAGGA 58.977 41.667 0.00 0.00 0.00 3.71
43 44 5.483937 TGAAACATCTTAGTAGCCAGAGGAA 59.516 40.000 0.00 0.00 0.00 3.36
44 45 6.013725 TGAAACATCTTAGTAGCCAGAGGAAA 60.014 38.462 0.00 0.00 0.00 3.13
45 46 6.374417 AACATCTTAGTAGCCAGAGGAAAA 57.626 37.500 0.00 0.00 0.00 2.29
46 47 5.983540 ACATCTTAGTAGCCAGAGGAAAAG 58.016 41.667 0.00 0.00 0.00 2.27
47 48 5.721960 ACATCTTAGTAGCCAGAGGAAAAGA 59.278 40.000 0.00 0.00 0.00 2.52
48 49 6.213600 ACATCTTAGTAGCCAGAGGAAAAGAA 59.786 38.462 0.00 0.00 0.00 2.52
49 50 6.681729 TCTTAGTAGCCAGAGGAAAAGAAA 57.318 37.500 0.00 0.00 0.00 2.52
50 51 6.702329 TCTTAGTAGCCAGAGGAAAAGAAAG 58.298 40.000 0.00 0.00 0.00 2.62
51 52 3.680490 AGTAGCCAGAGGAAAAGAAAGC 58.320 45.455 0.00 0.00 0.00 3.51
52 53 2.664402 AGCCAGAGGAAAAGAAAGCA 57.336 45.000 0.00 0.00 0.00 3.91
53 54 2.949447 AGCCAGAGGAAAAGAAAGCAA 58.051 42.857 0.00 0.00 0.00 3.91
54 55 2.889678 AGCCAGAGGAAAAGAAAGCAAG 59.110 45.455 0.00 0.00 0.00 4.01
55 56 2.887152 GCCAGAGGAAAAGAAAGCAAGA 59.113 45.455 0.00 0.00 0.00 3.02
56 57 3.057666 GCCAGAGGAAAAGAAAGCAAGAG 60.058 47.826 0.00 0.00 0.00 2.85
57 58 3.057666 CCAGAGGAAAAGAAAGCAAGAGC 60.058 47.826 0.00 0.00 42.56 4.09
67 68 4.827481 GCAAGAGCGATTCCCGTA 57.173 55.556 0.00 0.00 41.15 4.02
68 69 2.594541 GCAAGAGCGATTCCCGTAG 58.405 57.895 0.00 0.00 41.15 3.51
69 70 0.179108 GCAAGAGCGATTCCCGTAGT 60.179 55.000 0.00 0.00 41.15 2.73
70 71 1.066605 GCAAGAGCGATTCCCGTAGTA 59.933 52.381 0.00 0.00 41.15 1.82
71 72 2.859032 GCAAGAGCGATTCCCGTAGTAG 60.859 54.545 0.00 0.00 41.15 2.57
72 73 0.953003 AGAGCGATTCCCGTAGTAGC 59.047 55.000 0.00 0.00 41.15 3.58
73 74 0.385723 GAGCGATTCCCGTAGTAGCG 60.386 60.000 0.00 0.00 41.15 4.26
74 75 2.015090 GCGATTCCCGTAGTAGCGC 61.015 63.158 0.00 0.00 41.15 5.92
75 76 1.371389 CGATTCCCGTAGTAGCGCC 60.371 63.158 2.29 0.00 0.00 6.53
76 77 1.371389 GATTCCCGTAGTAGCGCCG 60.371 63.158 2.29 0.00 0.00 6.46
77 78 1.789078 GATTCCCGTAGTAGCGCCGA 61.789 60.000 2.29 0.00 0.00 5.54
78 79 1.177256 ATTCCCGTAGTAGCGCCGAT 61.177 55.000 2.29 0.00 0.00 4.18
79 80 1.789078 TTCCCGTAGTAGCGCCGATC 61.789 60.000 2.29 0.00 0.00 3.69
80 81 2.127345 CCGTAGTAGCGCCGATCG 60.127 66.667 8.51 8.51 42.12 3.69
81 82 2.127345 CGTAGTAGCGCCGATCGG 60.127 66.667 30.03 30.03 38.94 4.18
89 90 3.715854 GCGCCGATCGGTATTCTAT 57.284 52.632 33.33 0.00 38.94 1.98
90 91 2.838386 GCGCCGATCGGTATTCTATA 57.162 50.000 33.33 0.00 38.94 1.31
91 92 3.351020 GCGCCGATCGGTATTCTATAT 57.649 47.619 33.33 0.00 38.94 0.86
92 93 3.298317 GCGCCGATCGGTATTCTATATC 58.702 50.000 33.33 12.90 38.94 1.63
93 94 3.242969 GCGCCGATCGGTATTCTATATCA 60.243 47.826 33.33 0.00 38.94 2.15
94 95 4.528504 CGCCGATCGGTATTCTATATCAG 58.471 47.826 33.33 4.98 37.65 2.90
95 96 4.291783 GCCGATCGGTATTCTATATCAGC 58.708 47.826 33.33 11.40 37.65 4.26
96 97 4.528504 CCGATCGGTATTCTATATCAGCG 58.471 47.826 26.35 0.00 0.00 5.18
97 98 4.528504 CGATCGGTATTCTATATCAGCGG 58.471 47.826 7.38 0.00 33.06 5.52
98 99 4.272748 CGATCGGTATTCTATATCAGCGGA 59.727 45.833 7.38 0.00 33.06 5.54
99 100 4.959596 TCGGTATTCTATATCAGCGGAC 57.040 45.455 0.00 0.00 33.06 4.79
100 101 3.693085 TCGGTATTCTATATCAGCGGACC 59.307 47.826 0.00 0.00 33.06 4.46
101 102 3.181489 CGGTATTCTATATCAGCGGACCC 60.181 52.174 0.00 0.00 0.00 4.46
102 103 3.767673 GGTATTCTATATCAGCGGACCCA 59.232 47.826 0.00 0.00 0.00 4.51
103 104 4.222145 GGTATTCTATATCAGCGGACCCAA 59.778 45.833 0.00 0.00 0.00 4.12
104 105 3.746045 TTCTATATCAGCGGACCCAAC 57.254 47.619 0.00 0.00 0.00 3.77
105 106 1.968493 TCTATATCAGCGGACCCAACC 59.032 52.381 0.00 0.00 0.00 3.77
106 107 1.002087 CTATATCAGCGGACCCAACCC 59.998 57.143 0.00 0.00 0.00 4.11
107 108 0.694444 ATATCAGCGGACCCAACCCT 60.694 55.000 0.00 0.00 0.00 4.34
108 109 1.335132 TATCAGCGGACCCAACCCTC 61.335 60.000 0.00 0.00 0.00 4.30
109 110 4.410400 CAGCGGACCCAACCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
112 113 2.933834 CGGACCCAACCCTCCCTT 60.934 66.667 0.00 0.00 0.00 3.95
113 114 2.763902 GGACCCAACCCTCCCTTG 59.236 66.667 0.00 0.00 0.00 3.61
114 115 2.035783 GACCCAACCCTCCCTTGC 59.964 66.667 0.00 0.00 0.00 4.01
115 116 2.780924 ACCCAACCCTCCCTTGCA 60.781 61.111 0.00 0.00 0.00 4.08
116 117 2.155197 GACCCAACCCTCCCTTGCAT 62.155 60.000 0.00 0.00 0.00 3.96
117 118 1.380380 CCCAACCCTCCCTTGCATC 60.380 63.158 0.00 0.00 0.00 3.91
118 119 1.693640 CCAACCCTCCCTTGCATCT 59.306 57.895 0.00 0.00 0.00 2.90
119 120 0.918983 CCAACCCTCCCTTGCATCTA 59.081 55.000 0.00 0.00 0.00 1.98
120 121 1.284785 CCAACCCTCCCTTGCATCTAA 59.715 52.381 0.00 0.00 0.00 2.10
121 122 2.648059 CAACCCTCCCTTGCATCTAAG 58.352 52.381 0.00 0.00 0.00 2.18
122 123 1.216990 ACCCTCCCTTGCATCTAAGG 58.783 55.000 0.00 0.00 45.51 2.69
123 124 0.179006 CCCTCCCTTGCATCTAAGGC 60.179 60.000 0.00 0.00 44.75 4.35
124 125 0.548031 CCTCCCTTGCATCTAAGGCA 59.452 55.000 0.00 0.00 44.75 4.75
125 126 1.673168 CTCCCTTGCATCTAAGGCAC 58.327 55.000 0.00 0.00 44.75 5.01
126 127 0.991146 TCCCTTGCATCTAAGGCACA 59.009 50.000 0.00 0.00 44.75 4.57
127 128 1.565759 TCCCTTGCATCTAAGGCACAT 59.434 47.619 0.00 0.00 44.75 3.21
128 129 2.025037 TCCCTTGCATCTAAGGCACATT 60.025 45.455 0.00 0.00 44.75 2.71
129 130 2.762327 CCCTTGCATCTAAGGCACATTT 59.238 45.455 0.00 0.00 44.75 2.32
130 131 3.181483 CCCTTGCATCTAAGGCACATTTC 60.181 47.826 0.00 0.00 44.75 2.17
131 132 3.444742 CCTTGCATCTAAGGCACATTTCA 59.555 43.478 0.00 0.00 41.75 2.69
132 133 4.098960 CCTTGCATCTAAGGCACATTTCAT 59.901 41.667 0.00 0.00 41.75 2.57
133 134 4.906065 TGCATCTAAGGCACATTTCATC 57.094 40.909 0.00 0.00 36.11 2.92
134 135 4.529897 TGCATCTAAGGCACATTTCATCT 58.470 39.130 0.00 0.00 36.11 2.90
135 136 4.577693 TGCATCTAAGGCACATTTCATCTC 59.422 41.667 0.00 0.00 36.11 2.75
136 137 4.820716 GCATCTAAGGCACATTTCATCTCT 59.179 41.667 0.00 0.00 0.00 3.10
137 138 5.277876 GCATCTAAGGCACATTTCATCTCTG 60.278 44.000 0.00 0.00 0.00 3.35
138 139 4.774124 TCTAAGGCACATTTCATCTCTGG 58.226 43.478 0.00 0.00 0.00 3.86
139 140 2.431954 AGGCACATTTCATCTCTGGG 57.568 50.000 0.00 0.00 0.00 4.45
140 141 0.743097 GGCACATTTCATCTCTGGGC 59.257 55.000 0.00 0.00 38.60 5.36
141 142 0.743097 GCACATTTCATCTCTGGGCC 59.257 55.000 0.00 0.00 33.14 5.80
142 143 1.396653 CACATTTCATCTCTGGGCCC 58.603 55.000 17.59 17.59 0.00 5.80
143 144 1.002069 ACATTTCATCTCTGGGCCCA 58.998 50.000 26.67 26.67 0.00 5.36
144 145 1.341383 ACATTTCATCTCTGGGCCCAC 60.341 52.381 24.45 0.00 0.00 4.61
145 146 0.259938 ATTTCATCTCTGGGCCCACC 59.740 55.000 24.45 0.00 40.81 4.61
155 156 3.672503 GGCCCACCCCCAACAGAT 61.673 66.667 0.00 0.00 0.00 2.90
156 157 2.313427 GGCCCACCCCCAACAGATA 61.313 63.158 0.00 0.00 0.00 1.98
157 158 1.076995 GCCCACCCCCAACAGATAC 60.077 63.158 0.00 0.00 0.00 2.24
158 159 1.613061 CCCACCCCCAACAGATACC 59.387 63.158 0.00 0.00 0.00 2.73
159 160 1.223487 CCACCCCCAACAGATACCG 59.777 63.158 0.00 0.00 0.00 4.02
160 161 1.223487 CACCCCCAACAGATACCGG 59.777 63.158 0.00 0.00 0.00 5.28
161 162 1.229723 ACCCCCAACAGATACCGGT 60.230 57.895 13.98 13.98 0.00 5.28
162 163 0.043032 ACCCCCAACAGATACCGGTA 59.957 55.000 18.46 18.46 0.00 4.02
163 164 1.344701 ACCCCCAACAGATACCGGTAT 60.345 52.381 27.13 27.13 0.00 2.73
214 229 7.667557 TCCGTTACTCTAAATATTCCATCCAG 58.332 38.462 0.00 0.00 0.00 3.86
231 246 5.651139 CCATCCAGTCTGATCTTGAACAATT 59.349 40.000 0.00 0.00 0.00 2.32
232 247 6.183360 CCATCCAGTCTGATCTTGAACAATTC 60.183 42.308 0.00 0.00 0.00 2.17
238 253 5.180868 GTCTGATCTTGAACAATTCTGTGCT 59.819 40.000 0.00 0.00 35.37 4.40
239 254 5.180680 TCTGATCTTGAACAATTCTGTGCTG 59.819 40.000 0.00 0.00 35.37 4.41
248 263 1.760192 ATTCTGTGCTGGCCATCTTC 58.240 50.000 5.51 0.20 0.00 2.87
249 264 0.694771 TTCTGTGCTGGCCATCTTCT 59.305 50.000 5.51 0.00 0.00 2.85
250 265 0.035725 TCTGTGCTGGCCATCTTCTG 60.036 55.000 5.51 4.51 0.00 3.02
254 269 0.107508 TGCTGGCCATCTTCTGTAGC 60.108 55.000 5.51 2.81 0.00 3.58
282 298 8.589338 AGAATATTTTCCTAGATATGCACGAGT 58.411 33.333 0.00 0.00 31.84 4.18
300 316 4.337555 ACGAGTGTGTGTACCATATACTCC 59.662 45.833 10.61 0.00 39.27 3.85
304 320 3.887110 TGTGTGTACCATATACTCCCTCG 59.113 47.826 0.00 0.00 0.00 4.63
334 350 9.821662 ACTAAATATAAGACGTTTTTGCAGTTC 57.178 29.630 0.00 0.00 0.00 3.01
339 355 5.949233 AAGACGTTTTTGCAGTTCAATTC 57.051 34.783 0.00 0.00 34.12 2.17
342 358 6.042143 AGACGTTTTTGCAGTTCAATTCAAT 58.958 32.000 0.00 0.00 34.12 2.57
343 359 6.534793 AGACGTTTTTGCAGTTCAATTCAATT 59.465 30.769 0.00 0.00 34.12 2.32
344 360 6.476896 ACGTTTTTGCAGTTCAATTCAATTG 58.523 32.000 3.46 3.46 41.57 2.32
345 361 5.393163 CGTTTTTGCAGTTCAATTCAATTGC 59.607 36.000 5.12 2.51 40.05 3.56
368 384 7.585867 TGCACTGCAAAAACGTCTTATATTAA 58.414 30.769 0.00 0.00 34.76 1.40
395 411 7.854557 TGATGAACCATAGAAAATCAGTCTG 57.145 36.000 0.00 0.00 0.00 3.51
396 412 7.623630 TGATGAACCATAGAAAATCAGTCTGA 58.376 34.615 4.68 4.68 0.00 3.27
397 413 8.270030 TGATGAACCATAGAAAATCAGTCTGAT 58.730 33.333 9.68 9.68 39.09 2.90
398 414 9.770097 GATGAACCATAGAAAATCAGTCTGATA 57.230 33.333 15.77 0.21 35.76 2.15
399 415 8.948631 TGAACCATAGAAAATCAGTCTGATAC 57.051 34.615 15.77 10.29 35.76 2.24
400 416 8.539544 TGAACCATAGAAAATCAGTCTGATACA 58.460 33.333 15.77 0.78 35.76 2.29
401 417 9.553064 GAACCATAGAAAATCAGTCTGATACAT 57.447 33.333 15.77 5.34 35.76 2.29
424 442 7.806014 ACATTTGTTTATTACAATCACGGTGTC 59.194 33.333 8.17 0.00 45.72 3.67
429 447 7.442969 TGTTTATTACAATCACGGTGTCTTCTT 59.557 33.333 8.17 0.00 32.64 2.52
437 455 2.540101 CACGGTGTCTTCTTGAACAGTC 59.460 50.000 0.00 0.00 0.00 3.51
442 464 3.001736 GTGTCTTCTTGAACAGTCACAGC 59.998 47.826 0.00 0.00 31.90 4.40
446 468 3.032017 TCTTGAACAGTCACAGCTAGC 57.968 47.619 6.62 6.62 31.90 3.42
463 485 1.594331 AGCGTCACACTTTTTCTCCC 58.406 50.000 0.00 0.00 0.00 4.30
536 564 1.900486 ACGAAGAACCCTAACCTCCAG 59.100 52.381 0.00 0.00 0.00 3.86
542 570 2.042930 CCTAACCTCCAGCCCCCT 59.957 66.667 0.00 0.00 0.00 4.79
544 598 1.054978 CCTAACCTCCAGCCCCCTAC 61.055 65.000 0.00 0.00 0.00 3.18
547 601 4.431524 CCTCCAGCCCCCTACCCA 62.432 72.222 0.00 0.00 0.00 4.51
580 659 2.386661 GAGCAAATCGGAGGACAAGA 57.613 50.000 0.00 0.00 0.00 3.02
581 660 2.275318 GAGCAAATCGGAGGACAAGAG 58.725 52.381 0.00 0.00 0.00 2.85
582 661 1.065854 AGCAAATCGGAGGACAAGAGG 60.066 52.381 0.00 0.00 0.00 3.69
583 662 2.014068 GCAAATCGGAGGACAAGAGGG 61.014 57.143 0.00 0.00 0.00 4.30
584 663 0.253327 AAATCGGAGGACAAGAGGGC 59.747 55.000 0.00 0.00 0.00 5.19
585 664 0.909610 AATCGGAGGACAAGAGGGCA 60.910 55.000 0.00 0.00 0.00 5.36
586 665 0.692419 ATCGGAGGACAAGAGGGCAT 60.692 55.000 0.00 0.00 0.00 4.40
587 666 1.153289 CGGAGGACAAGAGGGCATG 60.153 63.158 0.00 0.00 0.00 4.06
588 667 1.225704 GGAGGACAAGAGGGCATGG 59.774 63.158 0.00 0.00 0.00 3.66
589 668 1.225704 GAGGACAAGAGGGCATGGG 59.774 63.158 0.00 0.00 0.00 4.00
590 669 1.229951 AGGACAAGAGGGCATGGGA 60.230 57.895 0.00 0.00 0.00 4.37
591 670 1.225704 GGACAAGAGGGCATGGGAG 59.774 63.158 0.00 0.00 0.00 4.30
592 671 1.274703 GGACAAGAGGGCATGGGAGA 61.275 60.000 0.00 0.00 0.00 3.71
593 672 0.107459 GACAAGAGGGCATGGGAGAC 60.107 60.000 0.00 0.00 0.00 3.36
594 673 1.153289 CAAGAGGGCATGGGAGACG 60.153 63.158 0.00 0.00 0.00 4.18
595 674 1.306141 AAGAGGGCATGGGAGACGA 60.306 57.895 0.00 0.00 0.00 4.20
596 675 1.333636 AAGAGGGCATGGGAGACGAG 61.334 60.000 0.00 0.00 0.00 4.18
597 676 2.765807 AGGGCATGGGAGACGAGG 60.766 66.667 0.00 0.00 0.00 4.63
598 677 3.866582 GGGCATGGGAGACGAGGG 61.867 72.222 0.00 0.00 0.00 4.30
599 678 3.866582 GGCATGGGAGACGAGGGG 61.867 72.222 0.00 0.00 0.00 4.79
600 679 3.866582 GCATGGGAGACGAGGGGG 61.867 72.222 0.00 0.00 0.00 5.40
601 680 2.041922 CATGGGAGACGAGGGGGA 60.042 66.667 0.00 0.00 0.00 4.81
602 681 2.136878 CATGGGAGACGAGGGGGAG 61.137 68.421 0.00 0.00 0.00 4.30
603 682 3.396822 ATGGGAGACGAGGGGGAGG 62.397 68.421 0.00 0.00 0.00 4.30
604 683 3.752167 GGGAGACGAGGGGGAGGA 61.752 72.222 0.00 0.00 0.00 3.71
605 684 2.442458 GGAGACGAGGGGGAGGAC 60.442 72.222 0.00 0.00 0.00 3.85
617 696 1.379309 GGAGGACGAGGAGCTCACT 60.379 63.158 17.19 10.28 0.00 3.41
630 709 3.499929 CTCACTGTGCCGTCGTGGT 62.500 63.158 2.12 0.00 41.21 4.16
695 774 1.667154 CCGCCCTGAAGACGATCTCA 61.667 60.000 0.00 0.00 0.00 3.27
696 775 0.526524 CGCCCTGAAGACGATCTCAC 60.527 60.000 0.00 0.00 0.00 3.51
697 776 0.179097 GCCCTGAAGACGATCTCACC 60.179 60.000 0.00 0.00 0.00 4.02
698 777 0.101399 CCCTGAAGACGATCTCACCG 59.899 60.000 0.00 0.00 0.00 4.94
699 778 0.101399 CCTGAAGACGATCTCACCGG 59.899 60.000 0.00 0.00 0.00 5.28
700 779 0.526524 CTGAAGACGATCTCACCGGC 60.527 60.000 0.00 0.00 34.76 6.13
734 816 2.184579 CCGCTCCTCCTCGGTTTC 59.815 66.667 0.00 0.00 40.72 2.78
917 1001 2.759973 CCTGTCAGCCGAGCCCTA 60.760 66.667 0.00 0.00 0.00 3.53
929 1020 1.794714 GAGCCCTACCATTCTCCTCA 58.205 55.000 0.00 0.00 0.00 3.86
1312 1694 3.520721 TGGTGATCCATGAGATGTGTTCT 59.479 43.478 0.00 0.00 39.03 3.01
1329 1711 4.150098 GTGTTCTACTAGTGCTTTTCGTGG 59.850 45.833 5.39 0.00 0.00 4.94
1361 1743 3.788937 CCGAATTACACGGTAGGATTGT 58.211 45.455 0.00 0.00 44.57 2.71
1399 1781 6.817765 TTTCCATAGAAATCTGGTGTGTTC 57.182 37.500 0.00 0.00 37.07 3.18
1461 1843 6.799926 ATTTCAATTGTTTTGGTACCATGC 57.200 33.333 17.17 9.52 0.00 4.06
1465 1847 2.373335 TGTTTTGGTACCATGCCACT 57.627 45.000 17.17 0.00 35.46 4.00
1493 1876 5.046087 TGAGAAGTGTCATTCTGATCCATGT 60.046 40.000 0.00 0.00 39.63 3.21
1571 1955 0.540923 GAGGATGAGGCTTGCAGAGT 59.459 55.000 0.00 0.00 0.00 3.24
1731 2117 6.944557 TCGTCCTATTTACAATATGATGCG 57.055 37.500 0.00 0.00 0.00 4.73
1768 2154 6.826741 AGAAACTACACCAAGAAACAGCTAAA 59.173 34.615 0.00 0.00 0.00 1.85
1769 2155 7.338449 AGAAACTACACCAAGAAACAGCTAAAA 59.662 33.333 0.00 0.00 0.00 1.52
1770 2156 7.399245 AACTACACCAAGAAACAGCTAAAAA 57.601 32.000 0.00 0.00 0.00 1.94
1794 2185 6.673154 ATTTATGGGCGTGTAGAACTTTAC 57.327 37.500 0.00 0.00 0.00 2.01
1803 2194 5.210715 CGTGTAGAACTTTACTCGTGACTT 58.789 41.667 0.00 0.00 36.39 3.01
1850 2566 5.519206 GTCGCGTTGATTAGAAGTAGGAAAT 59.481 40.000 5.77 0.00 0.00 2.17
1947 2664 4.527509 TCAAACAGTGTTCTGGCAAAAA 57.472 36.364 9.40 0.00 45.14 1.94
1948 2665 4.493547 TCAAACAGTGTTCTGGCAAAAAG 58.506 39.130 9.40 0.00 45.14 2.27
1949 2666 3.525268 AACAGTGTTCTGGCAAAAAGG 57.475 42.857 1.64 0.00 45.14 3.11
1999 2740 6.986904 AGATAACTTAGCTTAGCAAACCAC 57.013 37.500 7.07 0.00 0.00 4.16
2009 2750 0.613292 AGCAAACCACACCACACCAA 60.613 50.000 0.00 0.00 0.00 3.67
2210 3124 3.181483 GCTTCCCAAAGGTGCTCATAATG 60.181 47.826 0.00 0.00 32.79 1.90
2244 3158 9.974980 GACTTTAGGAAGAAATTCTATCTCGAT 57.025 33.333 0.00 0.00 36.69 3.59
2352 3267 6.088085 CGACAAAATATGCAGAAACCAAGTTC 59.912 38.462 0.00 0.00 0.00 3.01
2403 3318 4.202367 CCCAACTACCCAGATAGGAATGTC 60.202 50.000 0.00 0.00 41.22 3.06
2526 3442 6.375455 ACCACACAATCAGTTTCCATTATCTC 59.625 38.462 0.00 0.00 0.00 2.75
2547 3467 7.214467 TCTCAGTTCAAGTTTTCTTTTGTGT 57.786 32.000 0.00 0.00 38.17 3.72
2633 3567 3.868661 GTGAACAGTGTGTATGTGTGTGA 59.131 43.478 0.00 0.00 0.00 3.58
2814 3792 5.129485 GTCTATGGTGGATATATGGTCCTGG 59.871 48.000 9.56 0.00 36.68 4.45
2836 3814 4.107622 GTGTATGTTTGCCTTGCATCATC 58.892 43.478 9.38 4.95 38.76 2.92
2941 3926 7.376072 GCTGCTGTTACCATTAAAATCGAATAC 59.624 37.037 0.00 0.00 0.00 1.89
2983 3978 5.509272 CGACAACGGATTTTTCTTGATCATG 59.491 40.000 0.00 0.00 35.72 3.07
3226 4251 6.740110 AGACGAAGATGATAGCGACTAAAAT 58.260 36.000 0.00 0.00 0.00 1.82
3231 4256 8.752254 CGAAGATGATAGCGACTAAAATTTACA 58.248 33.333 0.00 0.00 0.00 2.41
3276 4303 6.903516 TGGTTCAGTGATATCATTTGGATCT 58.096 36.000 9.02 0.00 37.44 2.75
3290 4323 4.585955 TTGGATCTACGGATAGTCTTGC 57.414 45.455 0.00 0.00 31.46 4.01
3314 4347 6.295292 GCCTTTCCTGATCTTATTTGGTTGTT 60.295 38.462 0.00 0.00 0.00 2.83
3328 4361 5.659048 TTGGTTGTTTGTGTGTGAAAAAC 57.341 34.783 0.00 0.00 34.97 2.43
3455 4493 6.889301 ATGGAATATGGAACTTGCATACTG 57.111 37.500 5.22 0.00 33.52 2.74
3489 4529 6.834959 TTTCGTCAGCAGAGATGATTATTC 57.165 37.500 0.00 0.00 33.81 1.75
3549 4589 8.483307 AATTTTGTCTCCATTGCACATAATTC 57.517 30.769 0.00 0.00 30.53 2.17
3561 4601 6.500684 TGCACATAATTCCTGAAGAGAAAC 57.499 37.500 0.00 0.00 0.00 2.78
3562 4602 5.415701 TGCACATAATTCCTGAAGAGAAACC 59.584 40.000 0.00 0.00 0.00 3.27
3566 4606 7.065563 CACATAATTCCTGAAGAGAAACCAGAG 59.934 40.741 0.00 0.00 0.00 3.35
3569 4609 4.881019 TCCTGAAGAGAAACCAGAGAAG 57.119 45.455 0.00 0.00 0.00 2.85
3571 4611 4.901849 TCCTGAAGAGAAACCAGAGAAGAA 59.098 41.667 0.00 0.00 0.00 2.52
3573 4613 5.220710 TGAAGAGAAACCAGAGAAGAAGG 57.779 43.478 0.00 0.00 0.00 3.46
3600 4641 5.523588 TCTCTGGATATCACAAAGGAGAGT 58.476 41.667 4.83 0.00 0.00 3.24
3608 4652 9.482627 GGATATCACAAAGGAGAGTTATTACAG 57.517 37.037 4.83 0.00 0.00 2.74
3612 4656 7.609056 TCACAAAGGAGAGTTATTACAGTACC 58.391 38.462 0.00 0.00 0.00 3.34
3613 4657 7.233962 TCACAAAGGAGAGTTATTACAGTACCA 59.766 37.037 0.00 0.00 0.00 3.25
3622 4666 5.832060 AGTTATTACAGTACCATAGCTCGGT 59.168 40.000 12.14 12.14 40.73 4.69
3626 4670 1.030457 AGTACCATAGCTCGGTTCCG 58.970 55.000 12.67 4.74 37.99 4.30
3628 4672 1.135721 GTACCATAGCTCGGTTCCGTT 59.864 52.381 12.67 1.80 37.99 4.44
3629 4673 0.175073 ACCATAGCTCGGTTCCGTTC 59.825 55.000 11.04 4.59 30.53 3.95
3630 4674 0.174845 CCATAGCTCGGTTCCGTTCA 59.825 55.000 11.04 0.00 0.00 3.18
3631 4675 1.202533 CCATAGCTCGGTTCCGTTCAT 60.203 52.381 11.04 0.00 0.00 2.57
3632 4676 1.860950 CATAGCTCGGTTCCGTTCATG 59.139 52.381 11.04 7.15 0.00 3.07
3633 4677 0.174845 TAGCTCGGTTCCGTTCATGG 59.825 55.000 11.04 0.00 0.00 3.66
3634 4678 1.079405 GCTCGGTTCCGTTCATGGA 60.079 57.895 11.04 0.00 35.83 3.41
3635 4679 1.084370 GCTCGGTTCCGTTCATGGAG 61.084 60.000 11.04 0.87 39.72 3.86
3636 4680 0.460284 CTCGGTTCCGTTCATGGAGG 60.460 60.000 11.04 0.00 39.72 4.30
3637 4681 0.901114 TCGGTTCCGTTCATGGAGGA 60.901 55.000 11.04 0.00 39.72 3.71
3638 4682 0.460284 CGGTTCCGTTCATGGAGGAG 60.460 60.000 2.82 0.00 39.72 3.69
3639 4683 0.744771 GGTTCCGTTCATGGAGGAGC 60.745 60.000 0.00 3.14 39.72 4.70
3640 4684 0.250513 GTTCCGTTCATGGAGGAGCT 59.749 55.000 0.00 0.00 39.72 4.09
3641 4685 0.984230 TTCCGTTCATGGAGGAGCTT 59.016 50.000 0.00 0.00 39.72 3.74
3642 4686 0.250234 TCCGTTCATGGAGGAGCTTG 59.750 55.000 0.00 0.00 33.05 4.01
3643 4687 0.036010 CCGTTCATGGAGGAGCTTGT 60.036 55.000 0.00 0.00 0.00 3.16
3644 4688 1.081892 CGTTCATGGAGGAGCTTGTG 58.918 55.000 0.00 0.00 0.00 3.33
3645 4689 1.457346 GTTCATGGAGGAGCTTGTGG 58.543 55.000 0.00 0.00 0.00 4.17
3646 4690 0.322816 TTCATGGAGGAGCTTGTGGC 60.323 55.000 0.00 0.00 42.19 5.01
3647 4691 1.751927 CATGGAGGAGCTTGTGGCC 60.752 63.158 0.00 0.00 43.05 5.36
3648 4692 3.335356 ATGGAGGAGCTTGTGGCCG 62.335 63.158 0.00 0.00 43.05 6.13
3650 4694 4.704833 GAGGAGCTTGTGGCCGCA 62.705 66.667 16.89 16.89 43.05 5.69
3651 4695 3.984193 GAGGAGCTTGTGGCCGCAT 62.984 63.158 21.95 4.92 43.05 4.73
3652 4696 3.512516 GGAGCTTGTGGCCGCATC 61.513 66.667 21.95 14.89 43.05 3.91
3653 4697 3.512516 GAGCTTGTGGCCGCATCC 61.513 66.667 21.95 13.99 43.05 3.51
3654 4698 3.984193 GAGCTTGTGGCCGCATCCT 62.984 63.158 21.95 18.69 43.05 3.24
3655 4699 3.818787 GCTTGTGGCCGCATCCTG 61.819 66.667 21.95 11.81 34.27 3.86
3656 4700 2.046023 CTTGTGGCCGCATCCTGA 60.046 61.111 21.95 3.22 0.00 3.86
3657 4701 2.046023 TTGTGGCCGCATCCTGAG 60.046 61.111 21.95 0.00 0.00 3.35
3658 4702 2.526450 CTTGTGGCCGCATCCTGAGA 62.526 60.000 21.95 1.53 0.00 3.27
3659 4703 2.512515 GTGGCCGCATCCTGAGAC 60.513 66.667 12.58 0.00 0.00 3.36
3660 4704 4.147449 TGGCCGCATCCTGAGACG 62.147 66.667 0.00 0.00 0.00 4.18
3703 4747 1.931841 CTGAGACGGACGAAGACGATA 59.068 52.381 0.00 0.00 42.66 2.92
3739 4783 3.764466 CACGGCGAGAAGAGGGCT 61.764 66.667 16.62 0.00 0.00 5.19
3801 4845 2.992817 AAAGCCACCACCGCCATCAA 62.993 55.000 0.00 0.00 0.00 2.57
3817 4861 4.254709 AACGCCAGCACCAGCAGA 62.255 61.111 0.00 0.00 45.49 4.26
3835 4879 0.383246 GACCGACGACGATCATCGAG 60.383 60.000 19.21 10.91 45.13 4.04
3919 4963 1.145156 CAATATCCCCACACCGCGA 59.855 57.895 8.23 0.00 0.00 5.87
3954 4998 3.092511 GGGCAGGGATCAGCTCCA 61.093 66.667 0.00 0.00 46.98 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.033504 TCAGTTCGCCAGGTTGTCTC 59.966 55.000 0.00 0.00 0.00 3.36
3 4 0.468226 TTCAGTTCGCCAGGTTGTCT 59.532 50.000 0.00 0.00 0.00 3.41
4 5 1.002792 GTTTCAGTTCGCCAGGTTGTC 60.003 52.381 0.00 0.00 0.00 3.18
6 7 1.021202 TGTTTCAGTTCGCCAGGTTG 58.979 50.000 0.00 0.00 0.00 3.77
7 8 1.880027 GATGTTTCAGTTCGCCAGGTT 59.120 47.619 0.00 0.00 0.00 3.50
8 9 1.072331 AGATGTTTCAGTTCGCCAGGT 59.928 47.619 0.00 0.00 0.00 4.00
9 10 1.813513 AGATGTTTCAGTTCGCCAGG 58.186 50.000 0.00 0.00 0.00 4.45
10 11 3.997021 ACTAAGATGTTTCAGTTCGCCAG 59.003 43.478 0.00 0.00 0.00 4.85
11 12 4.002906 ACTAAGATGTTTCAGTTCGCCA 57.997 40.909 0.00 0.00 0.00 5.69
12 13 4.033014 GCTACTAAGATGTTTCAGTTCGCC 59.967 45.833 0.00 0.00 0.00 5.54
13 14 4.033014 GGCTACTAAGATGTTTCAGTTCGC 59.967 45.833 0.00 0.00 0.00 4.70
14 15 5.168569 TGGCTACTAAGATGTTTCAGTTCG 58.831 41.667 0.00 0.00 0.00 3.95
15 16 6.398918 TCTGGCTACTAAGATGTTTCAGTTC 58.601 40.000 0.00 0.00 0.00 3.01
16 17 6.360370 TCTGGCTACTAAGATGTTTCAGTT 57.640 37.500 0.00 0.00 0.00 3.16
17 18 5.105146 CCTCTGGCTACTAAGATGTTTCAGT 60.105 44.000 0.00 0.00 0.00 3.41
18 19 5.127845 TCCTCTGGCTACTAAGATGTTTCAG 59.872 44.000 0.00 0.00 0.00 3.02
19 20 5.023452 TCCTCTGGCTACTAAGATGTTTCA 58.977 41.667 0.00 0.00 0.00 2.69
20 21 5.599999 TCCTCTGGCTACTAAGATGTTTC 57.400 43.478 0.00 0.00 0.00 2.78
21 22 6.374417 TTTCCTCTGGCTACTAAGATGTTT 57.626 37.500 0.00 0.00 0.00 2.83
22 23 6.213600 TCTTTTCCTCTGGCTACTAAGATGTT 59.786 38.462 0.00 0.00 0.00 2.71
23 24 5.721960 TCTTTTCCTCTGGCTACTAAGATGT 59.278 40.000 0.00 0.00 0.00 3.06
24 25 6.227298 TCTTTTCCTCTGGCTACTAAGATG 57.773 41.667 0.00 0.00 0.00 2.90
25 26 6.875972 TTCTTTTCCTCTGGCTACTAAGAT 57.124 37.500 0.00 0.00 0.00 2.40
26 27 6.681729 TTTCTTTTCCTCTGGCTACTAAGA 57.318 37.500 0.00 0.00 0.00 2.10
27 28 5.352846 GCTTTCTTTTCCTCTGGCTACTAAG 59.647 44.000 0.00 0.00 0.00 2.18
28 29 5.221843 TGCTTTCTTTTCCTCTGGCTACTAA 60.222 40.000 0.00 0.00 0.00 2.24
29 30 4.286032 TGCTTTCTTTTCCTCTGGCTACTA 59.714 41.667 0.00 0.00 0.00 1.82
30 31 3.073062 TGCTTTCTTTTCCTCTGGCTACT 59.927 43.478 0.00 0.00 0.00 2.57
31 32 3.412386 TGCTTTCTTTTCCTCTGGCTAC 58.588 45.455 0.00 0.00 0.00 3.58
32 33 3.788227 TGCTTTCTTTTCCTCTGGCTA 57.212 42.857 0.00 0.00 0.00 3.93
33 34 2.664402 TGCTTTCTTTTCCTCTGGCT 57.336 45.000 0.00 0.00 0.00 4.75
34 35 2.887152 TCTTGCTTTCTTTTCCTCTGGC 59.113 45.455 0.00 0.00 0.00 4.85
35 36 3.057666 GCTCTTGCTTTCTTTTCCTCTGG 60.058 47.826 0.00 0.00 36.03 3.86
36 37 3.364764 CGCTCTTGCTTTCTTTTCCTCTG 60.365 47.826 0.00 0.00 36.97 3.35
37 38 2.810852 CGCTCTTGCTTTCTTTTCCTCT 59.189 45.455 0.00 0.00 36.97 3.69
38 39 2.808543 TCGCTCTTGCTTTCTTTTCCTC 59.191 45.455 0.00 0.00 36.97 3.71
39 40 2.851195 TCGCTCTTGCTTTCTTTTCCT 58.149 42.857 0.00 0.00 36.97 3.36
40 41 3.839051 ATCGCTCTTGCTTTCTTTTCC 57.161 42.857 0.00 0.00 36.97 3.13
41 42 4.162072 GGAATCGCTCTTGCTTTCTTTTC 58.838 43.478 0.00 0.00 36.97 2.29
42 43 3.057245 GGGAATCGCTCTTGCTTTCTTTT 60.057 43.478 0.00 0.00 36.97 2.27
43 44 2.489722 GGGAATCGCTCTTGCTTTCTTT 59.510 45.455 0.00 0.00 36.97 2.52
44 45 2.087646 GGGAATCGCTCTTGCTTTCTT 58.912 47.619 0.00 0.00 36.97 2.52
45 46 1.743996 GGGAATCGCTCTTGCTTTCT 58.256 50.000 0.00 0.00 36.97 2.52
46 47 0.375106 CGGGAATCGCTCTTGCTTTC 59.625 55.000 0.00 0.00 36.97 2.62
47 48 0.321653 ACGGGAATCGCTCTTGCTTT 60.322 50.000 0.00 0.00 43.89 3.51
48 49 0.535335 TACGGGAATCGCTCTTGCTT 59.465 50.000 0.00 0.00 43.89 3.91
49 50 0.103208 CTACGGGAATCGCTCTTGCT 59.897 55.000 0.00 0.00 43.89 3.91
50 51 0.179108 ACTACGGGAATCGCTCTTGC 60.179 55.000 0.00 0.00 43.89 4.01
51 52 2.859032 GCTACTACGGGAATCGCTCTTG 60.859 54.545 0.00 0.00 43.89 3.02
52 53 1.337387 GCTACTACGGGAATCGCTCTT 59.663 52.381 0.00 0.00 43.89 2.85
53 54 0.953003 GCTACTACGGGAATCGCTCT 59.047 55.000 0.00 0.00 43.89 4.09
54 55 0.385723 CGCTACTACGGGAATCGCTC 60.386 60.000 0.00 0.00 43.89 5.03
55 56 1.653115 CGCTACTACGGGAATCGCT 59.347 57.895 0.00 0.00 43.89 4.93
56 57 2.015090 GCGCTACTACGGGAATCGC 61.015 63.158 0.00 0.00 43.89 4.58
57 58 1.371389 GGCGCTACTACGGGAATCG 60.371 63.158 7.64 0.00 45.88 3.34
58 59 1.371389 CGGCGCTACTACGGGAATC 60.371 63.158 7.64 0.00 0.00 2.52
59 60 1.177256 ATCGGCGCTACTACGGGAAT 61.177 55.000 7.64 0.00 0.00 3.01
60 61 1.789078 GATCGGCGCTACTACGGGAA 61.789 60.000 7.64 0.00 0.00 3.97
61 62 2.203252 ATCGGCGCTACTACGGGA 60.203 61.111 7.64 0.00 0.00 5.14
62 63 2.254651 GATCGGCGCTACTACGGG 59.745 66.667 7.64 0.00 0.00 5.28
63 64 2.127345 CGATCGGCGCTACTACGG 60.127 66.667 7.64 0.00 0.00 4.02
64 65 1.560004 TACCGATCGGCGCTACTACG 61.560 60.000 33.62 6.60 39.32 3.51
65 66 0.801251 ATACCGATCGGCGCTACTAC 59.199 55.000 33.62 0.00 39.32 2.73
66 67 1.466167 GAATACCGATCGGCGCTACTA 59.534 52.381 33.62 17.55 39.32 1.82
67 68 0.240411 GAATACCGATCGGCGCTACT 59.760 55.000 33.62 15.81 39.32 2.57
68 69 0.240411 AGAATACCGATCGGCGCTAC 59.760 55.000 33.62 19.97 39.32 3.58
69 70 1.812235 TAGAATACCGATCGGCGCTA 58.188 50.000 33.62 23.69 39.32 4.26
70 71 1.174783 ATAGAATACCGATCGGCGCT 58.825 50.000 33.62 24.66 39.32 5.92
71 72 2.838386 TATAGAATACCGATCGGCGC 57.162 50.000 33.62 19.34 39.32 6.53
72 73 4.528504 CTGATATAGAATACCGATCGGCG 58.471 47.826 33.62 12.10 39.32 6.46
73 74 4.291783 GCTGATATAGAATACCGATCGGC 58.708 47.826 33.62 17.37 40.60 5.54
74 75 4.528504 CGCTGATATAGAATACCGATCGG 58.471 47.826 32.20 32.20 42.03 4.18
75 76 4.272748 TCCGCTGATATAGAATACCGATCG 59.727 45.833 8.51 8.51 0.00 3.69
76 77 5.505985 GGTCCGCTGATATAGAATACCGATC 60.506 48.000 0.00 0.00 0.00 3.69
77 78 4.338682 GGTCCGCTGATATAGAATACCGAT 59.661 45.833 0.00 0.00 0.00 4.18
78 79 3.693085 GGTCCGCTGATATAGAATACCGA 59.307 47.826 0.00 0.00 0.00 4.69
79 80 3.181489 GGGTCCGCTGATATAGAATACCG 60.181 52.174 0.00 0.00 0.00 4.02
80 81 3.767673 TGGGTCCGCTGATATAGAATACC 59.232 47.826 0.00 0.00 0.00 2.73
81 82 5.169295 GTTGGGTCCGCTGATATAGAATAC 58.831 45.833 0.00 0.00 0.00 1.89
82 83 4.222145 GGTTGGGTCCGCTGATATAGAATA 59.778 45.833 0.00 0.00 0.00 1.75
83 84 3.008049 GGTTGGGTCCGCTGATATAGAAT 59.992 47.826 0.00 0.00 0.00 2.40
84 85 2.367567 GGTTGGGTCCGCTGATATAGAA 59.632 50.000 0.00 0.00 0.00 2.10
85 86 1.968493 GGTTGGGTCCGCTGATATAGA 59.032 52.381 0.00 0.00 0.00 1.98
86 87 1.002087 GGGTTGGGTCCGCTGATATAG 59.998 57.143 0.00 0.00 0.00 1.31
87 88 1.053424 GGGTTGGGTCCGCTGATATA 58.947 55.000 0.00 0.00 0.00 0.86
88 89 0.694444 AGGGTTGGGTCCGCTGATAT 60.694 55.000 0.00 0.00 0.00 1.63
89 90 1.306654 AGGGTTGGGTCCGCTGATA 60.307 57.895 0.00 0.00 0.00 2.15
90 91 2.610859 AGGGTTGGGTCCGCTGAT 60.611 61.111 0.00 0.00 0.00 2.90
91 92 3.319198 GAGGGTTGGGTCCGCTGA 61.319 66.667 0.00 0.00 0.00 4.26
92 93 4.410400 GGAGGGTTGGGTCCGCTG 62.410 72.222 0.00 0.00 0.00 5.18
95 96 2.933834 AAGGGAGGGTTGGGTCCG 60.934 66.667 0.00 0.00 33.13 4.79
96 97 2.763902 CAAGGGAGGGTTGGGTCC 59.236 66.667 0.00 0.00 0.00 4.46
97 98 2.035783 GCAAGGGAGGGTTGGGTC 59.964 66.667 0.00 0.00 0.00 4.46
98 99 2.155197 GATGCAAGGGAGGGTTGGGT 62.155 60.000 0.00 0.00 0.00 4.51
99 100 1.380380 GATGCAAGGGAGGGTTGGG 60.380 63.158 0.00 0.00 0.00 4.12
100 101 0.918983 TAGATGCAAGGGAGGGTTGG 59.081 55.000 0.00 0.00 0.00 3.77
101 102 2.648059 CTTAGATGCAAGGGAGGGTTG 58.352 52.381 0.00 0.00 0.00 3.77
102 103 1.566231 CCTTAGATGCAAGGGAGGGTT 59.434 52.381 0.00 0.00 41.30 4.11
103 104 1.216990 CCTTAGATGCAAGGGAGGGT 58.783 55.000 0.00 0.00 41.30 4.34
104 105 0.179006 GCCTTAGATGCAAGGGAGGG 60.179 60.000 4.36 0.00 44.56 4.30
105 106 0.548031 TGCCTTAGATGCAAGGGAGG 59.452 55.000 4.36 4.97 44.56 4.30
106 107 1.065199 TGTGCCTTAGATGCAAGGGAG 60.065 52.381 4.36 0.00 45.49 4.30
107 108 0.991146 TGTGCCTTAGATGCAAGGGA 59.009 50.000 4.36 0.00 44.56 4.20
108 109 2.062971 ATGTGCCTTAGATGCAAGGG 57.937 50.000 4.36 0.00 44.56 3.95
109 110 3.444742 TGAAATGTGCCTTAGATGCAAGG 59.555 43.478 0.00 0.00 46.74 3.61
110 111 4.707030 TGAAATGTGCCTTAGATGCAAG 57.293 40.909 0.00 0.00 41.06 4.01
111 112 4.951715 AGATGAAATGTGCCTTAGATGCAA 59.048 37.500 0.00 0.00 41.06 4.08
112 113 4.529897 AGATGAAATGTGCCTTAGATGCA 58.470 39.130 0.00 0.00 36.12 3.96
113 114 4.820716 AGAGATGAAATGTGCCTTAGATGC 59.179 41.667 0.00 0.00 0.00 3.91
114 115 5.238868 CCAGAGATGAAATGTGCCTTAGATG 59.761 44.000 0.00 0.00 0.00 2.90
115 116 5.374921 CCAGAGATGAAATGTGCCTTAGAT 58.625 41.667 0.00 0.00 0.00 1.98
116 117 4.384537 CCCAGAGATGAAATGTGCCTTAGA 60.385 45.833 0.00 0.00 0.00 2.10
117 118 3.881688 CCCAGAGATGAAATGTGCCTTAG 59.118 47.826 0.00 0.00 0.00 2.18
118 119 3.889815 CCCAGAGATGAAATGTGCCTTA 58.110 45.455 0.00 0.00 0.00 2.69
119 120 2.731572 CCCAGAGATGAAATGTGCCTT 58.268 47.619 0.00 0.00 0.00 4.35
120 121 1.684248 GCCCAGAGATGAAATGTGCCT 60.684 52.381 0.00 0.00 0.00 4.75
121 122 0.743097 GCCCAGAGATGAAATGTGCC 59.257 55.000 0.00 0.00 0.00 5.01
122 123 0.743097 GGCCCAGAGATGAAATGTGC 59.257 55.000 0.00 0.00 0.00 4.57
123 124 1.341285 TGGGCCCAGAGATGAAATGTG 60.341 52.381 24.45 0.00 0.00 3.21
124 125 1.002069 TGGGCCCAGAGATGAAATGT 58.998 50.000 24.45 0.00 0.00 2.71
125 126 1.396653 GTGGGCCCAGAGATGAAATG 58.603 55.000 29.55 0.00 0.00 2.32
126 127 0.259938 GGTGGGCCCAGAGATGAAAT 59.740 55.000 29.55 0.00 0.00 2.17
127 128 1.691219 GGTGGGCCCAGAGATGAAA 59.309 57.895 29.55 0.00 0.00 2.69
128 129 3.415186 GGTGGGCCCAGAGATGAA 58.585 61.111 29.55 0.00 0.00 2.57
138 139 2.313427 TATCTGTTGGGGGTGGGCC 61.313 63.158 0.00 0.00 0.00 5.80
139 140 1.076995 GTATCTGTTGGGGGTGGGC 60.077 63.158 0.00 0.00 0.00 5.36
140 141 1.613061 GGTATCTGTTGGGGGTGGG 59.387 63.158 0.00 0.00 0.00 4.61
141 142 1.223487 CGGTATCTGTTGGGGGTGG 59.777 63.158 0.00 0.00 0.00 4.61
142 143 1.223487 CCGGTATCTGTTGGGGGTG 59.777 63.158 0.00 0.00 0.00 4.61
143 144 0.043032 TACCGGTATCTGTTGGGGGT 59.957 55.000 11.16 0.00 0.00 4.95
144 145 1.346722 GATACCGGTATCTGTTGGGGG 59.653 57.143 36.78 0.00 39.01 5.40
145 146 2.037251 CTGATACCGGTATCTGTTGGGG 59.963 54.545 40.37 23.29 41.80 4.96
146 147 2.037251 CCTGATACCGGTATCTGTTGGG 59.963 54.545 40.37 30.57 41.80 4.12
147 148 2.548067 GCCTGATACCGGTATCTGTTGG 60.548 54.545 40.37 34.50 41.80 3.77
148 149 2.755650 GCCTGATACCGGTATCTGTTG 58.244 52.381 40.37 30.70 41.80 3.33
149 150 1.340248 CGCCTGATACCGGTATCTGTT 59.660 52.381 40.37 18.73 41.80 3.16
150 151 0.959553 CGCCTGATACCGGTATCTGT 59.040 55.000 40.37 19.10 41.80 3.41
151 152 1.244816 TCGCCTGATACCGGTATCTG 58.755 55.000 40.37 38.34 41.80 2.90
152 153 1.819288 CATCGCCTGATACCGGTATCT 59.181 52.381 40.37 24.89 41.80 1.98
153 154 1.135083 CCATCGCCTGATACCGGTATC 60.135 57.143 37.23 37.23 41.67 2.24
154 155 0.895530 CCATCGCCTGATACCGGTAT 59.104 55.000 27.13 27.13 32.18 2.73
155 156 1.812686 GCCATCGCCTGATACCGGTA 61.813 60.000 18.46 18.46 32.18 4.02
156 157 3.138625 CCATCGCCTGATACCGGT 58.861 61.111 13.98 13.98 32.18 5.28
157 158 2.357517 GCCATCGCCTGATACCGG 60.358 66.667 0.00 0.00 32.18 5.28
158 159 2.734723 CGCCATCGCCTGATACCG 60.735 66.667 0.00 0.00 32.18 4.02
214 229 5.180868 AGCACAGAATTGTTCAAGATCAGAC 59.819 40.000 0.00 0.00 34.62 3.51
231 246 0.035725 CAGAAGATGGCCAGCACAGA 60.036 55.000 25.38 0.00 0.00 3.41
232 247 0.322277 ACAGAAGATGGCCAGCACAG 60.322 55.000 25.38 15.49 0.00 3.66
250 265 9.103861 GCATATCTAGGAAAATATTCTGGCTAC 57.896 37.037 0.00 0.00 35.79 3.58
254 269 7.819415 TCGTGCATATCTAGGAAAATATTCTGG 59.181 37.037 0.00 0.00 35.79 3.86
287 303 5.320277 AGTTACCGAGGGAGTATATGGTAC 58.680 45.833 0.00 0.00 32.05 3.34
290 306 6.906157 TTTAGTTACCGAGGGAGTATATGG 57.094 41.667 0.00 0.00 0.00 2.74
300 316 8.862550 AAACGTCTTATATTTAGTTACCGAGG 57.137 34.615 0.00 0.00 0.00 4.63
343 359 3.980646 ATAAGACGTTTTTGCAGTGCA 57.019 38.095 15.37 15.37 36.47 4.57
344 360 7.749126 AGTTAATATAAGACGTTTTTGCAGTGC 59.251 33.333 8.58 8.58 0.00 4.40
345 361 9.607285 AAGTTAATATAAGACGTTTTTGCAGTG 57.393 29.630 0.00 0.00 0.00 3.66
368 384 8.105829 AGACTGATTTTCTATGGTTCATCAAGT 58.894 33.333 0.00 0.00 0.00 3.16
404 420 7.360575 AGAAGACACCGTGATTGTAATAAAC 57.639 36.000 5.28 0.00 0.00 2.01
414 432 3.181465 ACTGTTCAAGAAGACACCGTGAT 60.181 43.478 5.28 0.00 0.00 3.06
424 442 3.431572 GCTAGCTGTGACTGTTCAAGAAG 59.568 47.826 7.70 0.00 31.90 2.85
429 447 0.673985 ACGCTAGCTGTGACTGTTCA 59.326 50.000 13.93 0.00 0.00 3.18
437 455 1.502231 AAAGTGTGACGCTAGCTGTG 58.498 50.000 13.93 0.00 0.00 3.66
442 464 2.737252 GGGAGAAAAAGTGTGACGCTAG 59.263 50.000 0.00 0.00 0.00 3.42
446 468 1.961793 TGGGGAGAAAAAGTGTGACG 58.038 50.000 0.00 0.00 0.00 4.35
463 485 3.811083 TGTAGTGGTAGTGTTTGGTTGG 58.189 45.455 0.00 0.00 0.00 3.77
536 564 2.150014 AATGTGTGTGGGTAGGGGGC 62.150 60.000 0.00 0.00 0.00 5.80
542 570 1.002544 TCGATGCAATGTGTGTGGGTA 59.997 47.619 0.00 0.00 0.00 3.69
544 598 0.448990 CTCGATGCAATGTGTGTGGG 59.551 55.000 0.00 0.00 0.00 4.61
576 655 1.153289 CGTCTCCCATGCCCTCTTG 60.153 63.158 0.00 0.00 0.00 3.02
577 656 1.306141 TCGTCTCCCATGCCCTCTT 60.306 57.895 0.00 0.00 0.00 2.85
578 657 1.760086 CTCGTCTCCCATGCCCTCT 60.760 63.158 0.00 0.00 0.00 3.69
579 658 2.801631 CCTCGTCTCCCATGCCCTC 61.802 68.421 0.00 0.00 0.00 4.30
580 659 2.765807 CCTCGTCTCCCATGCCCT 60.766 66.667 0.00 0.00 0.00 5.19
581 660 3.866582 CCCTCGTCTCCCATGCCC 61.867 72.222 0.00 0.00 0.00 5.36
582 661 3.866582 CCCCTCGTCTCCCATGCC 61.867 72.222 0.00 0.00 0.00 4.40
583 662 3.866582 CCCCCTCGTCTCCCATGC 61.867 72.222 0.00 0.00 0.00 4.06
584 663 2.041922 TCCCCCTCGTCTCCCATG 60.042 66.667 0.00 0.00 0.00 3.66
585 664 2.283809 CTCCCCCTCGTCTCCCAT 59.716 66.667 0.00 0.00 0.00 4.00
586 665 4.075793 CCTCCCCCTCGTCTCCCA 62.076 72.222 0.00 0.00 0.00 4.37
587 666 3.752167 TCCTCCCCCTCGTCTCCC 61.752 72.222 0.00 0.00 0.00 4.30
588 667 2.442458 GTCCTCCCCCTCGTCTCC 60.442 72.222 0.00 0.00 0.00 3.71
589 668 2.829458 CGTCCTCCCCCTCGTCTC 60.829 72.222 0.00 0.00 0.00 3.36
590 669 3.336568 TCGTCCTCCCCCTCGTCT 61.337 66.667 0.00 0.00 0.00 4.18
591 670 2.829458 CTCGTCCTCCCCCTCGTC 60.829 72.222 0.00 0.00 0.00 4.20
592 671 4.444081 CCTCGTCCTCCCCCTCGT 62.444 72.222 0.00 0.00 0.00 4.18
593 672 4.124943 TCCTCGTCCTCCCCCTCG 62.125 72.222 0.00 0.00 0.00 4.63
594 673 2.123640 CTCCTCGTCCTCCCCCTC 60.124 72.222 0.00 0.00 0.00 4.30
595 674 4.467107 GCTCCTCGTCCTCCCCCT 62.467 72.222 0.00 0.00 0.00 4.79
596 675 4.467107 AGCTCCTCGTCCTCCCCC 62.467 72.222 0.00 0.00 0.00 5.40
597 676 2.835895 GAGCTCCTCGTCCTCCCC 60.836 72.222 0.87 0.00 0.00 4.81
598 677 2.043852 TGAGCTCCTCGTCCTCCC 60.044 66.667 12.15 0.00 32.35 4.30
599 678 1.379309 AGTGAGCTCCTCGTCCTCC 60.379 63.158 12.15 0.00 32.35 4.30
600 679 0.963355 ACAGTGAGCTCCTCGTCCTC 60.963 60.000 12.15 0.00 32.35 3.71
601 680 1.075836 ACAGTGAGCTCCTCGTCCT 59.924 57.895 12.15 0.00 32.35 3.85
602 681 1.214062 CACAGTGAGCTCCTCGTCC 59.786 63.158 12.15 0.00 32.35 4.79
603 682 1.445238 GCACAGTGAGCTCCTCGTC 60.445 63.158 12.15 0.00 32.35 4.20
604 683 2.653702 GCACAGTGAGCTCCTCGT 59.346 61.111 12.15 1.95 32.35 4.18
605 684 2.125753 GGCACAGTGAGCTCCTCG 60.126 66.667 12.15 1.25 32.35 4.63
617 696 3.986006 GGAGACCACGACGGCACA 61.986 66.667 0.00 0.00 39.03 4.57
630 709 3.209812 CGACGCCATCCTCGGAGA 61.210 66.667 6.58 0.00 0.00 3.71
682 761 1.511305 GCCGGTGAGATCGTCTTCA 59.489 57.895 1.90 0.00 0.00 3.02
700 779 4.821589 GAGCGGGAGAAGCGGTGG 62.822 72.222 0.00 0.00 40.04 4.61
734 816 1.878522 CTCCCTGATCGCGAAACCG 60.879 63.158 15.24 7.00 0.00 4.44
806 890 4.115199 GGGCCCGCTGGTCATTCT 62.115 66.667 5.69 0.00 38.32 2.40
917 1001 2.293598 AGGGGAATGAGGAGAATGGT 57.706 50.000 0.00 0.00 0.00 3.55
929 1020 0.621862 AGGAGAAGCGGAAGGGGAAT 60.622 55.000 0.00 0.00 0.00 3.01
1312 1694 4.325028 TCAACCACGAAAAGCACTAGTA 57.675 40.909 0.00 0.00 0.00 1.82
1329 1711 4.399978 CGTGTAATTCGGGTCAAATCAAC 58.600 43.478 0.00 0.00 0.00 3.18
1359 1741 4.390264 TGGAAATCACACGAATTACCACA 58.610 39.130 0.00 0.00 0.00 4.17
1361 1743 6.645306 TCTATGGAAATCACACGAATTACCA 58.355 36.000 0.00 0.00 0.00 3.25
1416 1798 2.290134 TGTACAGTACTGCTCCGAGTCT 60.290 50.000 22.90 2.45 0.00 3.24
1461 1843 7.402737 TCAGAATGACACTTCTCACAAAGTGG 61.403 42.308 18.05 4.04 46.85 4.00
1493 1876 3.096092 GGTGGACATGGATTTTTGGCTA 58.904 45.455 0.00 0.00 0.00 3.93
1571 1955 2.101249 CAGTTTTTGCTGCCTCCTTGAA 59.899 45.455 0.00 0.00 0.00 2.69
1600 1984 2.166829 GTGATGGGTTGTATTGTGCCA 58.833 47.619 0.00 0.00 0.00 4.92
1612 1996 1.293062 AATCAGAGCCTGTGATGGGT 58.707 50.000 4.96 0.00 40.97 4.51
1731 2117 4.024809 GGTGTAGTTTCTGACACAAGAAGC 60.025 45.833 7.40 0.00 46.34 3.86
1768 2154 6.584185 AAGTTCTACACGCCCATAAATTTT 57.416 33.333 0.00 0.00 0.00 1.82
1769 2155 6.584185 AAAGTTCTACACGCCCATAAATTT 57.416 33.333 0.00 0.00 0.00 1.82
1770 2156 6.882678 AGTAAAGTTCTACACGCCCATAAATT 59.117 34.615 0.00 0.00 0.00 1.82
1771 2157 6.412214 AGTAAAGTTCTACACGCCCATAAAT 58.588 36.000 0.00 0.00 0.00 1.40
1819 2210 5.640357 ACTTCTAATCAACGCGACCAAATAA 59.360 36.000 15.93 0.00 0.00 1.40
1850 2566 7.775093 ACTCATTTTCAAGCTGCCATAGTTATA 59.225 33.333 0.00 0.00 0.00 0.98
1927 2644 3.618150 CCTTTTTGCCAGAACACTGTTTG 59.382 43.478 0.00 0.00 0.00 2.93
1971 2703 7.963465 GGTTTGCTAAGCTAAGTTATCTTGTTC 59.037 37.037 8.86 0.39 35.36 3.18
1999 2740 5.711976 AGAGGAAAAATATCTTGGTGTGGTG 59.288 40.000 0.00 0.00 0.00 4.17
2100 3014 6.595716 CCTAAAATCCTACAGTTTCCAGTCAG 59.404 42.308 0.00 0.00 0.00 3.51
2210 3124 8.518702 AGAATTTCTTCCTAAAGTCATTTCTGC 58.481 33.333 0.00 0.00 36.24 4.26
2244 3158 5.798125 AGAAGTCTCAGACAATGAACAGA 57.202 39.130 7.77 0.00 37.52 3.41
2352 3267 6.604930 ACAGTCCGTGGAAATAATTTTAACG 58.395 36.000 0.00 0.00 35.95 3.18
2403 3318 5.155278 TGTTGTACACCAGTATTGTAGGG 57.845 43.478 0.00 0.00 30.01 3.53
2526 3442 5.925969 ACCACACAAAAGAAAACTTGAACTG 59.074 36.000 0.00 0.00 0.00 3.16
2624 3544 6.710295 TGCAACTTTAAGATAGTCACACACAT 59.290 34.615 0.00 0.00 0.00 3.21
2633 3567 7.611855 ACTGGCTAATTGCAACTTTAAGATAGT 59.388 33.333 0.00 0.00 45.15 2.12
2814 3792 3.574284 TGATGCAAGGCAAACATACAC 57.426 42.857 0.00 0.00 43.62 2.90
2953 3938 6.258287 TCAAGAAAAATCCGTTGTCGTTTCTA 59.742 34.615 0.00 0.00 37.54 2.10
2983 3978 5.220416 GCTCACATCAGTCGGTGTAATTTAC 60.220 44.000 0.00 0.00 36.43 2.01
3226 4251 7.399245 AACAAAACTAGCAGAAAGGTGTAAA 57.601 32.000 0.00 0.00 0.00 2.01
3231 4256 5.186992 ACCAAAACAAAACTAGCAGAAAGGT 59.813 36.000 0.00 0.00 0.00 3.50
3276 4303 3.132289 CAGGAAAGGCAAGACTATCCGTA 59.868 47.826 0.00 0.00 32.22 4.02
3290 4323 6.840780 ACAACCAAATAAGATCAGGAAAGG 57.159 37.500 0.00 0.00 0.00 3.11
3314 4347 4.021544 AGCTTTCAGGTTTTTCACACACAA 60.022 37.500 0.00 0.00 0.00 3.33
3328 4361 2.031682 CCTCGTCAAAACAGCTTTCAGG 60.032 50.000 0.00 0.00 0.00 3.86
3380 4413 7.709269 GATACATTACAACCACGTGTATCAT 57.291 36.000 15.65 0.00 45.38 2.45
3455 4493 5.460646 TCTGCTGACGAAATTTTCCATTTC 58.539 37.500 3.61 0.00 35.34 2.17
3489 4529 1.298264 TGCAGTTTGCTTCAACGCG 60.298 52.632 3.53 3.53 45.31 6.01
3549 4589 4.881019 TCTTCTCTGGTTTCTCTTCAGG 57.119 45.455 0.00 0.00 0.00 3.86
3569 4609 3.389329 TGTGATATCCAGAGAAGCCCTTC 59.611 47.826 0.00 0.00 39.78 3.46
3571 4611 3.051940 TGTGATATCCAGAGAAGCCCT 57.948 47.619 0.00 0.00 0.00 5.19
3573 4613 4.133078 CCTTTGTGATATCCAGAGAAGCC 58.867 47.826 0.00 0.00 0.00 4.35
3582 4623 9.482627 CTGTAATAACTCTCCTTTGTGATATCC 57.517 37.037 0.00 0.00 0.00 2.59
3587 4628 7.233962 TGGTACTGTAATAACTCTCCTTTGTGA 59.766 37.037 0.00 0.00 0.00 3.58
3588 4629 7.383687 TGGTACTGTAATAACTCTCCTTTGTG 58.616 38.462 0.00 0.00 0.00 3.33
3600 4641 6.239120 GGAACCGAGCTATGGTACTGTAATAA 60.239 42.308 10.36 0.00 39.29 1.40
3608 4652 0.743097 ACGGAACCGAGCTATGGTAC 59.257 55.000 20.14 6.40 39.29 3.34
3612 4656 1.860950 CATGAACGGAACCGAGCTATG 59.139 52.381 20.14 13.13 42.83 2.23
3613 4657 1.202533 CCATGAACGGAACCGAGCTAT 60.203 52.381 20.14 5.88 42.83 2.97
3622 4666 0.984230 AAGCTCCTCCATGAACGGAA 59.016 50.000 0.00 0.00 33.65 4.30
3626 4670 1.457346 CCACAAGCTCCTCCATGAAC 58.543 55.000 0.00 0.00 0.00 3.18
3628 4672 1.300963 GCCACAAGCTCCTCCATGA 59.699 57.895 0.00 0.00 38.99 3.07
3629 4673 1.751927 GGCCACAAGCTCCTCCATG 60.752 63.158 0.00 0.00 43.05 3.66
3630 4674 2.679716 GGCCACAAGCTCCTCCAT 59.320 61.111 0.00 0.00 43.05 3.41
3631 4675 4.020617 CGGCCACAAGCTCCTCCA 62.021 66.667 2.24 0.00 43.05 3.86
3633 4677 3.984193 ATGCGGCCACAAGCTCCTC 62.984 63.158 2.24 0.00 43.05 3.71
3634 4678 3.984193 GATGCGGCCACAAGCTCCT 62.984 63.158 2.24 0.00 43.05 3.69
3635 4679 3.512516 GATGCGGCCACAAGCTCC 61.513 66.667 2.24 0.00 43.05 4.70
3636 4680 3.512516 GGATGCGGCCACAAGCTC 61.513 66.667 2.24 0.00 43.05 4.09
3637 4681 4.039092 AGGATGCGGCCACAAGCT 62.039 61.111 2.24 0.00 43.05 3.74
3638 4682 3.818787 CAGGATGCGGCCACAAGC 61.819 66.667 2.24 0.00 42.60 4.01
3639 4683 2.046023 TCAGGATGCGGCCACAAG 60.046 61.111 2.24 0.00 34.76 3.16
3640 4684 2.046023 CTCAGGATGCGGCCACAA 60.046 61.111 2.24 0.00 34.76 3.33
3641 4685 3.002583 TCTCAGGATGCGGCCACA 61.003 61.111 2.24 0.00 34.76 4.17
3642 4686 2.512515 GTCTCAGGATGCGGCCAC 60.513 66.667 2.24 0.00 34.76 5.01
3643 4687 4.147449 CGTCTCAGGATGCGGCCA 62.147 66.667 2.24 0.00 34.76 5.36
3644 4688 4.899239 CCGTCTCAGGATGCGGCC 62.899 72.222 0.00 0.00 37.69 6.13
3645 4689 4.899239 CCCGTCTCAGGATGCGGC 62.899 72.222 0.00 0.00 42.54 6.53
3646 4690 4.227134 CCCCGTCTCAGGATGCGG 62.227 72.222 0.00 0.00 43.40 5.69
3647 4691 3.144120 CTCCCCGTCTCAGGATGCG 62.144 68.421 0.00 0.00 34.76 4.73
3648 4692 2.801631 CCTCCCCGTCTCAGGATGC 61.802 68.421 0.00 0.00 34.76 3.91
3649 4693 1.075970 TCCTCCCCGTCTCAGGATG 60.076 63.158 0.00 0.00 30.92 3.51
3650 4694 1.231641 CTCCTCCCCGTCTCAGGAT 59.768 63.158 0.00 0.00 35.70 3.24
3651 4695 2.684104 CTCCTCCCCGTCTCAGGA 59.316 66.667 0.00 0.00 34.97 3.86
3652 4696 3.151022 GCTCCTCCCCGTCTCAGG 61.151 72.222 0.00 0.00 0.00 3.86
3653 4697 1.684049 AAGCTCCTCCCCGTCTCAG 60.684 63.158 0.00 0.00 0.00 3.35
3654 4698 1.984570 CAAGCTCCTCCCCGTCTCA 60.985 63.158 0.00 0.00 0.00 3.27
3655 4699 1.985116 ACAAGCTCCTCCCCGTCTC 60.985 63.158 0.00 0.00 0.00 3.36
3656 4700 2.120718 ACAAGCTCCTCCCCGTCT 59.879 61.111 0.00 0.00 0.00 4.18
3657 4701 2.266055 CACAAGCTCCTCCCCGTC 59.734 66.667 0.00 0.00 0.00 4.79
3658 4702 3.322466 CCACAAGCTCCTCCCCGT 61.322 66.667 0.00 0.00 0.00 5.28
3659 4703 4.785453 GCCACAAGCTCCTCCCCG 62.785 72.222 0.00 0.00 38.99 5.73
3660 4704 4.432741 GGCCACAAGCTCCTCCCC 62.433 72.222 0.00 0.00 43.05 4.81
3661 4705 4.785453 CGGCCACAAGCTCCTCCC 62.785 72.222 2.24 0.00 43.05 4.30
3739 4783 0.587768 TGTCGTCGAGCGTAGTCAAA 59.412 50.000 0.00 0.00 42.13 2.69
3801 4845 4.996434 GTCTGCTGGTGCTGGCGT 62.996 66.667 0.00 0.00 40.48 5.68
3806 4850 4.363990 CGTCGGTCTGCTGGTGCT 62.364 66.667 0.00 0.00 40.48 4.40
3833 4877 2.360475 GTGGACCAAGCCTGCCTC 60.360 66.667 0.00 0.00 0.00 4.70
3835 4879 4.329545 TCGTGGACCAAGCCTGCC 62.330 66.667 2.02 0.00 0.00 4.85
3866 4910 2.629051 GGATTGGATTTTCCTCGTCGT 58.371 47.619 0.00 0.00 37.46 4.34
3925 4969 1.227118 CCTGCCCGTTTTGCGTTTT 60.227 52.632 0.00 0.00 39.32 2.43
3954 4998 2.189521 CGGCGAGCCCAAGGTAAT 59.810 61.111 0.00 0.00 0.00 1.89
4064 5108 2.103042 CCTCTTCGCCTTCAAGCCG 61.103 63.158 0.00 0.00 0.00 5.52
4092 5136 2.580815 CATCCAGGCAGAGCACGA 59.419 61.111 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.