Multiple sequence alignment - TraesCS3B01G131400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G131400 chr3B 100.000 7421 0 0 1 7421 113521446 113514026 0.000000e+00 13705.0
1 TraesCS3B01G131400 chr3B 96.494 599 19 2 6825 7421 731261481 731260883 0.000000e+00 989.0
2 TraesCS3B01G131400 chr3B 95.847 602 22 3 6822 7421 792966374 792966974 0.000000e+00 970.0
3 TraesCS3B01G131400 chr3B 95.688 603 22 4 6821 7421 23388615 23388015 0.000000e+00 966.0
4 TraesCS3B01G131400 chr3B 92.941 85 5 1 3790 3874 603571701 603571784 1.010000e-23 122.0
5 TraesCS3B01G131400 chr3A 90.594 2020 137 29 1680 3671 80219523 80221517 0.000000e+00 2628.0
6 TraesCS3B01G131400 chr3A 90.209 1246 100 11 452 1685 80218053 80219288 0.000000e+00 1605.0
7 TraesCS3B01G131400 chr3A 85.901 1227 94 34 3873 5078 80222233 80223401 0.000000e+00 1234.0
8 TraesCS3B01G131400 chr3A 92.026 627 39 4 6029 6653 80224770 80225387 0.000000e+00 870.0
9 TraesCS3B01G131400 chr3A 94.041 386 21 1 5079 5462 80223705 80224090 1.070000e-162 584.0
10 TraesCS3B01G131400 chr3A 92.689 383 9 4 5696 6059 80224385 80224767 1.100000e-147 534.0
11 TraesCS3B01G131400 chr3A 89.385 358 32 6 1 356 80217690 80218043 5.280000e-121 446.0
12 TraesCS3B01G131400 chr3A 91.765 85 6 1 3790 3874 599793103 599793020 4.700000e-22 117.0
13 TraesCS3B01G131400 chr3A 96.429 56 2 0 3736 3791 80222179 80222234 7.930000e-15 93.5
14 TraesCS3B01G131400 chr3D 90.166 1566 109 17 2247 3791 68165228 68166769 0.000000e+00 1997.0
15 TraesCS3B01G131400 chr3D 86.462 1204 89 42 1051 2236 68163681 68164828 0.000000e+00 1253.0
16 TraesCS3B01G131400 chr3D 86.170 940 73 18 74 991 68162330 68163234 0.000000e+00 963.0
17 TraesCS3B01G131400 chr3D 92.971 626 37 4 6029 6653 68169157 68169776 0.000000e+00 905.0
18 TraesCS3B01G131400 chr3D 90.650 631 43 13 4950 5574 68167999 68168619 0.000000e+00 824.0
19 TraesCS3B01G131400 chr3D 88.227 688 42 15 4258 4934 68167216 68167875 0.000000e+00 785.0
20 TraesCS3B01G131400 chr3D 89.858 493 28 11 5586 6059 68168665 68169154 1.370000e-171 614.0
21 TraesCS3B01G131400 chr3D 88.636 220 23 2 3998 4216 68166991 68167209 4.410000e-67 267.0
22 TraesCS3B01G131400 chr3D 90.476 84 3 4 6738 6821 68169913 68169991 1.020000e-18 106.0
23 TraesCS3B01G131400 chr6B 96.506 601 18 3 6823 7421 117764044 117763445 0.000000e+00 990.0
24 TraesCS3B01G131400 chr6B 95.688 603 23 3 6821 7421 633734256 633733655 0.000000e+00 966.0
25 TraesCS3B01G131400 chr7B 96.154 598 21 2 6825 7421 381866505 381867101 0.000000e+00 976.0
26 TraesCS3B01G131400 chr4B 95.854 603 21 4 6821 7421 642449195 642449795 0.000000e+00 972.0
27 TraesCS3B01G131400 chr4B 91.765 85 5 1 3790 3874 322668972 322669054 4.700000e-22 117.0
28 TraesCS3B01G131400 chr4A 95.854 603 21 4 6822 7421 669840471 669839870 0.000000e+00 972.0
29 TraesCS3B01G131400 chr2B 95.993 599 21 3 6825 7421 42268042 42268639 0.000000e+00 970.0
30 TraesCS3B01G131400 chr2A 96.429 84 3 0 3790 3873 102688041 102688124 1.000000e-28 139.0
31 TraesCS3B01G131400 chr5B 90.722 97 9 0 3779 3875 50469118 50469214 6.040000e-26 130.0
32 TraesCS3B01G131400 chr5D 89.691 97 10 0 3779 3875 47332239 47332335 2.810000e-24 124.0
33 TraesCS3B01G131400 chr5D 92.941 85 6 0 3790 3874 297499826 297499910 2.810000e-24 124.0
34 TraesCS3B01G131400 chr4D 92.941 85 6 0 3790 3874 179862536 179862452 2.810000e-24 124.0
35 TraesCS3B01G131400 chr2D 91.765 85 7 0 3790 3874 318124907 318124991 1.310000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G131400 chr3B 113514026 113521446 7420 True 13705.000000 13705 100.000000 1 7421 1 chr3B.!!$R2 7420
1 TraesCS3B01G131400 chr3B 731260883 731261481 598 True 989.000000 989 96.494000 6825 7421 1 chr3B.!!$R3 596
2 TraesCS3B01G131400 chr3B 792966374 792966974 600 False 970.000000 970 95.847000 6822 7421 1 chr3B.!!$F2 599
3 TraesCS3B01G131400 chr3B 23388015 23388615 600 True 966.000000 966 95.688000 6821 7421 1 chr3B.!!$R1 600
4 TraesCS3B01G131400 chr3A 80217690 80225387 7697 False 999.312500 2628 91.409250 1 6653 8 chr3A.!!$F1 6652
5 TraesCS3B01G131400 chr3D 68162330 68169991 7661 False 857.111111 1997 89.290667 74 6821 9 chr3D.!!$F1 6747
6 TraesCS3B01G131400 chr6B 117763445 117764044 599 True 990.000000 990 96.506000 6823 7421 1 chr6B.!!$R1 598
7 TraesCS3B01G131400 chr6B 633733655 633734256 601 True 966.000000 966 95.688000 6821 7421 1 chr6B.!!$R2 600
8 TraesCS3B01G131400 chr7B 381866505 381867101 596 False 976.000000 976 96.154000 6825 7421 1 chr7B.!!$F1 596
9 TraesCS3B01G131400 chr4B 642449195 642449795 600 False 972.000000 972 95.854000 6821 7421 1 chr4B.!!$F2 600
10 TraesCS3B01G131400 chr4A 669839870 669840471 601 True 972.000000 972 95.854000 6822 7421 1 chr4A.!!$R1 599
11 TraesCS3B01G131400 chr2B 42268042 42268639 597 False 970.000000 970 95.993000 6825 7421 1 chr2B.!!$F1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.034756 TCCACAGTTGACATCCGTGG 59.965 55.0 11.31 11.31 46.90 4.94 F
333 335 0.163788 CTTGATGTGTCGGTCGTTGC 59.836 55.0 0.00 0.00 0.00 4.17 F
560 563 0.247185 AATTGTCCAAATGCGCAGGG 59.753 50.0 18.32 17.47 0.00 4.45 F
1731 2396 0.037326 TGACAGAGCACCATCCGAAC 60.037 55.0 0.00 0.00 0.00 3.95 F
1997 2670 0.190815 AAATTGCTGGGGGTTCAGGT 59.809 50.0 0.00 0.00 35.43 4.00 F
3360 4450 0.810031 GCACACACGTGTCTTGGACT 60.810 55.0 20.49 0.00 45.50 3.85 F
3623 4715 0.031414 GCTTGGGGTACTAGAGGGGA 60.031 60.0 0.00 0.00 0.00 4.81 F
4225 6057 0.103937 TCGCCAAAAGCCCAAAACAG 59.896 50.0 0.00 0.00 38.78 3.16 F
5499 7771 0.392706 TGTCAGCACCTTGATCACGT 59.607 50.0 0.00 0.00 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1683 0.318441 CGAAGCTCTCCACCTCAACA 59.682 55.000 0.00 0.0 0.00 3.33 R
1645 2070 0.319383 ACTCGATCATGAGCCGATGC 60.319 55.000 19.07 0.0 39.68 3.91 R
2379 3448 0.036952 GAAGTGCTGCTACCTGCTCA 60.037 55.000 0.00 0.0 43.37 4.26 R
3615 4707 0.042731 CTCCCTTGTGGTCCCCTCTA 59.957 60.000 0.00 0.0 34.77 2.43 R
3623 4715 0.398318 GAGTGAAGCTCCCTTGTGGT 59.602 55.000 0.00 0.0 38.27 4.16 R
4719 6553 1.278985 TCAGGCCAGTGACTAACATGG 59.721 52.381 5.01 0.0 35.84 3.66 R
5480 7752 0.392706 ACGTGATCAAGGTGCTGACA 59.607 50.000 13.36 0.0 0.00 3.58 R
6138 8531 1.663702 CGACGACCGCTTTCTGGTT 60.664 57.895 0.00 0.0 40.63 3.67 R
6595 8991 0.167470 CAAGACAATGCTCCACGCTG 59.833 55.000 0.00 0.0 40.11 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.979155 CCAGTGGACGAGAGCTCCA 60.979 63.158 10.93 0.00 38.41 3.86
36 37 0.827925 TGGACGAGAGCTCCACAGTT 60.828 55.000 10.93 0.00 36.72 3.16
44 45 0.036952 AGCTCCACAGTTGACATCCG 60.037 55.000 0.00 0.00 0.00 4.18
47 48 0.034756 TCCACAGTTGACATCCGTGG 59.965 55.000 11.31 11.31 46.90 4.94
48 49 3.605013 CACAGTTGACATCCGTGGA 57.395 52.632 0.00 0.00 0.00 4.02
49 50 2.099141 CACAGTTGACATCCGTGGAT 57.901 50.000 0.00 0.00 34.81 3.41
50 51 2.002586 CACAGTTGACATCCGTGGATC 58.997 52.381 0.00 0.00 31.62 3.36
51 52 1.280982 CAGTTGACATCCGTGGATCG 58.719 55.000 0.00 0.00 39.52 3.69
91 92 2.340577 CGTGAAGTCGTAATCGGTGTTC 59.659 50.000 0.00 0.00 37.69 3.18
100 101 2.631160 AATCGGTGTTCAGGTCAACA 57.369 45.000 0.00 0.00 33.75 3.33
131 132 2.711009 ACTGAATGGTTGGAGGTGAAGA 59.289 45.455 0.00 0.00 0.00 2.87
215 217 2.988839 GCCTTCAGCTGGGGTGGAT 61.989 63.158 15.13 0.00 38.99 3.41
217 219 1.565390 CCTTCAGCTGGGGTGGATCA 61.565 60.000 15.13 0.00 0.00 2.92
271 273 0.741326 TTGTGCTTTGGCTTACGCAA 59.259 45.000 0.00 0.00 39.59 4.85
285 287 2.511600 GCAATCCGTCCTGACCGG 60.512 66.667 0.00 0.00 46.83 5.28
325 327 0.389817 TCCTTCGCCTTGATGTGTCG 60.390 55.000 0.00 0.00 0.00 4.35
326 328 1.361668 CCTTCGCCTTGATGTGTCGG 61.362 60.000 0.00 0.00 0.00 4.79
327 329 0.670546 CTTCGCCTTGATGTGTCGGT 60.671 55.000 0.00 0.00 0.00 4.69
328 330 0.669318 TTCGCCTTGATGTGTCGGTC 60.669 55.000 0.00 0.00 0.00 4.79
329 331 2.444624 CGCCTTGATGTGTCGGTCG 61.445 63.158 0.00 0.00 0.00 4.79
330 332 1.374252 GCCTTGATGTGTCGGTCGT 60.374 57.895 0.00 0.00 0.00 4.34
331 333 0.949105 GCCTTGATGTGTCGGTCGTT 60.949 55.000 0.00 0.00 0.00 3.85
332 334 0.790207 CCTTGATGTGTCGGTCGTTG 59.210 55.000 0.00 0.00 0.00 4.10
333 335 0.163788 CTTGATGTGTCGGTCGTTGC 59.836 55.000 0.00 0.00 0.00 4.17
334 336 1.553195 TTGATGTGTCGGTCGTTGCG 61.553 55.000 0.00 0.00 0.00 4.85
335 337 2.019951 GATGTGTCGGTCGTTGCGT 61.020 57.895 0.00 0.00 0.00 5.24
336 338 1.554042 GATGTGTCGGTCGTTGCGTT 61.554 55.000 0.00 0.00 0.00 4.84
337 339 1.554042 ATGTGTCGGTCGTTGCGTTC 61.554 55.000 0.00 0.00 0.00 3.95
338 340 2.659244 TGTCGGTCGTTGCGTTCC 60.659 61.111 0.00 0.00 0.00 3.62
339 341 3.759828 GTCGGTCGTTGCGTTCCG 61.760 66.667 16.11 16.11 42.32 4.30
368 370 1.372004 CGTTGCGTTCCGTAGACCA 60.372 57.895 0.00 0.00 0.00 4.02
416 418 4.752879 CGGGATGCCGACCAACGT 62.753 66.667 22.73 0.00 40.78 3.99
420 422 1.375551 GGATGCCGACCAACGTTATT 58.624 50.000 0.00 0.00 40.78 1.40
428 430 2.433436 GACCAACGTTATTGGCTCCTT 58.567 47.619 0.00 0.00 43.23 3.36
446 448 3.134127 GGGCCGCTCCATCACAAC 61.134 66.667 0.00 0.00 36.21 3.32
481 483 1.194781 AGATCGGAACAGTGGTGGCT 61.195 55.000 0.00 0.00 0.00 4.75
515 517 4.432741 GAGGCAGTGGGGAAGGGC 62.433 72.222 0.00 0.00 0.00 5.19
560 563 0.247185 AATTGTCCAAATGCGCAGGG 59.753 50.000 18.32 17.47 0.00 4.45
581 584 3.509967 GGTTCACCTTGGTTTTGGATAGG 59.490 47.826 0.00 0.00 0.00 2.57
583 586 4.028993 TCACCTTGGTTTTGGATAGGTC 57.971 45.455 0.00 0.00 37.12 3.85
605 608 4.468510 TCCCCGTTATGTGAGTTCTACATT 59.531 41.667 0.00 0.00 39.36 2.71
606 609 5.657745 TCCCCGTTATGTGAGTTCTACATTA 59.342 40.000 0.00 0.00 39.36 1.90
611 614 7.447243 GTTATGTGAGTTCTACATTACGGAC 57.553 40.000 0.00 0.00 39.36 4.79
619 622 4.724074 TCTACATTACGGACGTCCAAAT 57.276 40.909 32.80 26.20 35.14 2.32
623 626 0.322322 TTACGGACGTCCAAATGCCT 59.678 50.000 32.80 8.99 35.14 4.75
653 656 3.701532 TTTGTTTAGTGCCGGTTTGAG 57.298 42.857 1.90 0.00 0.00 3.02
664 667 2.945890 GCCGGTTTGAGGGATTTCAGAT 60.946 50.000 1.90 0.00 0.00 2.90
665 668 2.684881 CCGGTTTGAGGGATTTCAGATG 59.315 50.000 0.00 0.00 0.00 2.90
669 672 4.082026 GGTTTGAGGGATTTCAGATGTTGG 60.082 45.833 0.00 0.00 0.00 3.77
683 686 3.255642 AGATGTTGGTCCGGACAAATTTG 59.744 43.478 34.40 16.67 0.00 2.32
689 692 5.637006 TGGTCCGGACAAATTTGATTAAG 57.363 39.130 34.40 10.21 0.00 1.85
690 693 5.317808 TGGTCCGGACAAATTTGATTAAGA 58.682 37.500 34.40 10.99 0.00 2.10
693 697 6.094881 GGTCCGGACAAATTTGATTAAGATGA 59.905 38.462 34.40 6.96 0.00 2.92
717 721 8.944029 TGATTAAAATGTTTAAACCGTCGGATA 58.056 29.630 20.51 7.87 0.00 2.59
728 732 2.160813 ACCGTCGGATACAAACATTTGC 59.839 45.455 20.51 0.00 41.79 3.68
745 749 3.363341 TTGCGAAAGGTTTGTTGATCC 57.637 42.857 0.00 0.00 0.00 3.36
775 779 6.153000 TGAAGTTGCCCTAAACTCTACTCTAG 59.847 42.308 0.00 0.00 39.48 2.43
796 800 2.203112 GGCGATTTACCCGGGACC 60.203 66.667 32.02 12.45 0.00 4.46
843 852 2.165301 GCGGACCCTTCGTTCATCG 61.165 63.158 0.00 0.00 41.41 3.84
896 906 1.302033 CCGCAGACTGCTTCACCTT 60.302 57.895 24.36 0.00 42.25 3.50
944 963 1.083141 GACCTCCCCTTCCCTTCCT 59.917 63.158 0.00 0.00 0.00 3.36
1228 1639 3.284251 TGAGGGAGAGGGCCAGGA 61.284 66.667 6.18 0.00 0.00 3.86
1266 1683 2.663796 CAGCAGCAGCAGAGGAGT 59.336 61.111 3.17 0.00 45.49 3.85
1311 1728 1.529713 CGGGCTAGAGGAGGAGGTC 60.530 68.421 0.00 0.00 0.00 3.85
1398 1815 2.743718 CTCTCCGGCACCAGTGTT 59.256 61.111 0.00 0.00 0.00 3.32
1455 1872 0.741915 CCTACTTGCTCCCTCTCGTC 59.258 60.000 0.00 0.00 0.00 4.20
1464 1881 0.255318 TCCCTCTCGTCCAGGTACTC 59.745 60.000 0.00 0.00 34.60 2.59
1469 1886 0.392729 CTCGTCCAGGTACTCGGACT 60.393 60.000 23.22 0.00 46.74 3.85
1494 1917 4.191544 CCCATCTTTTCACATTAGCGAGA 58.808 43.478 0.00 0.00 0.00 4.04
1495 1918 4.818546 CCCATCTTTTCACATTAGCGAGAT 59.181 41.667 0.00 0.00 0.00 2.75
1535 1958 8.780249 GGTATATTTGCACCGATGTTACTAATT 58.220 33.333 0.00 0.00 0.00 1.40
1602 2025 2.484264 GTGTAGTGAACCTGGTGCATTC 59.516 50.000 11.50 5.45 0.00 2.67
1605 2028 0.883833 GTGAACCTGGTGCATTCTGG 59.116 55.000 11.50 12.21 0.00 3.86
1645 2070 3.853671 GCAAAACAATTCATAGAGCGTGG 59.146 43.478 0.00 0.00 0.00 4.94
1649 2074 2.874701 ACAATTCATAGAGCGTGGCATC 59.125 45.455 0.00 0.00 0.00 3.91
1651 2076 0.249447 TTCATAGAGCGTGGCATCGG 60.249 55.000 10.56 0.00 0.00 4.18
1704 2369 9.941325 ATAACTCATATCAGAGAGGCTTATTTG 57.059 33.333 0.00 0.00 38.98 2.32
1728 2393 0.738762 CAGTGACAGAGCACCATCCG 60.739 60.000 0.00 0.00 39.59 4.18
1731 2396 0.037326 TGACAGAGCACCATCCGAAC 60.037 55.000 0.00 0.00 0.00 3.95
1735 2400 0.456221 AGAGCACCATCCGAACTACG 59.544 55.000 0.00 0.00 42.18 3.51
1765 2430 3.181487 GCCAATTTAACGTCCATGCTCAT 60.181 43.478 0.00 0.00 0.00 2.90
1797 2462 6.036517 GCATTAGACACCATTACAAGAGTGAG 59.963 42.308 0.00 0.00 34.33 3.51
1815 2480 6.926272 AGAGTGAGACAGTTTAGTGTTTGATC 59.074 38.462 0.00 0.00 0.00 2.92
1829 2494 0.478072 TTGATCAGGGTGCAAGTGGT 59.522 50.000 0.00 0.00 0.00 4.16
1864 2536 4.336280 AGAGGTCTAATGGAAGGTTTTGC 58.664 43.478 0.00 0.00 0.00 3.68
1887 2559 6.986817 TGCTTAAGAATAGTAACTGGATGAGC 59.013 38.462 6.67 0.00 0.00 4.26
1997 2670 0.190815 AAATTGCTGGGGGTTCAGGT 59.809 50.000 0.00 0.00 35.43 4.00
2055 2728 3.316308 GGCAGTTGTGAAATGAGACTGTT 59.684 43.478 0.00 0.00 39.79 3.16
2064 2737 6.425114 TGTGAAATGAGACTGTTTCTAGCTTC 59.575 38.462 0.00 0.00 35.80 3.86
2072 2745 2.058798 TGTTTCTAGCTTCGTCTTGCG 58.941 47.619 0.00 0.00 43.01 4.85
2117 2791 1.228228 GCTCATGCCCTGGATCCAA 59.772 57.895 17.00 0.17 0.00 3.53
2127 2801 3.644738 GCCCTGGATCCAATTTTCATCAT 59.355 43.478 17.00 0.00 0.00 2.45
2160 2836 1.204146 TGGTAGAGTCCAATCAGGCC 58.796 55.000 0.00 0.00 37.29 5.19
2178 2854 4.038402 CAGGCCAAATGAGTGTTTTCTCTT 59.962 41.667 5.01 0.00 35.68 2.85
2184 2860 7.086376 CCAAATGAGTGTTTTCTCTTACCATG 58.914 38.462 0.00 0.00 35.68 3.66
2188 2864 8.918202 ATGAGTGTTTTCTCTTACCATGTTTA 57.082 30.769 0.00 0.00 35.68 2.01
2286 3355 6.655003 TCAGTAACCATGGTCTTTGATTTCTC 59.345 38.462 20.07 0.00 0.00 2.87
2309 3378 2.167281 AGCTACTGCGTCATGATGAAGT 59.833 45.455 27.93 27.93 45.42 3.01
2406 3476 3.072476 AGGTAGCAGCACTTCCAAAGTAA 59.928 43.478 0.00 0.00 40.46 2.24
2407 3477 3.818773 GGTAGCAGCACTTCCAAAGTAAA 59.181 43.478 0.00 0.00 40.46 2.01
2408 3478 4.459337 GGTAGCAGCACTTCCAAAGTAAAT 59.541 41.667 0.00 0.00 40.46 1.40
2412 3482 6.348498 AGCAGCACTTCCAAAGTAAATTTTT 58.652 32.000 0.00 0.00 40.46 1.94
2438 3508 9.486123 TTTTTGGGAACTATGATTTGATATCCA 57.514 29.630 0.00 0.00 0.00 3.41
2499 3569 1.940613 GTCTTCCGTGTTGCAAAGTCT 59.059 47.619 0.00 0.00 0.00 3.24
2505 3575 3.682858 TCCGTGTTGCAAAGTCTATAAGC 59.317 43.478 0.00 0.00 0.00 3.09
2682 3752 4.744795 ATATCTGGTGTGTTCCTGAGTC 57.255 45.455 0.00 0.00 38.47 3.36
2692 3762 3.755378 GTGTTCCTGAGTCATGAGCAAAT 59.245 43.478 14.73 0.00 0.00 2.32
2704 3774 7.573710 AGTCATGAGCAAATAATTACTACCCA 58.426 34.615 0.00 0.00 0.00 4.51
2705 3775 7.716998 AGTCATGAGCAAATAATTACTACCCAG 59.283 37.037 0.00 0.00 0.00 4.45
2706 3776 7.715249 GTCATGAGCAAATAATTACTACCCAGA 59.285 37.037 0.00 0.00 0.00 3.86
2707 3777 8.271458 TCATGAGCAAATAATTACTACCCAGAA 58.729 33.333 0.00 0.00 0.00 3.02
2708 3778 9.071276 CATGAGCAAATAATTACTACCCAGAAT 57.929 33.333 0.00 0.00 0.00 2.40
2709 3779 9.646522 ATGAGCAAATAATTACTACCCAGAATT 57.353 29.630 0.00 0.00 0.00 2.17
2724 3795 5.829924 ACCCAGAATTACTATCCTGCATTTG 59.170 40.000 0.00 0.00 0.00 2.32
2774 3846 7.268199 TGGAATGAGTTCATTTATCTGCATC 57.732 36.000 8.62 0.00 45.72 3.91
2775 3847 6.829811 TGGAATGAGTTCATTTATCTGCATCA 59.170 34.615 8.62 0.00 45.72 3.07
2796 3868 0.908198 AGGTTCTGGATGAGGCAGAC 59.092 55.000 0.00 0.00 0.00 3.51
2814 3886 2.362077 AGACACAATGTTTGACCAAGGC 59.638 45.455 0.00 0.00 0.00 4.35
2832 3904 2.832129 AGGCTTTGGAGAAGACATACGA 59.168 45.455 0.00 0.00 0.00 3.43
2883 3955 1.704628 TCAAAGCCTGGTGATCAAGGA 59.295 47.619 16.31 0.00 0.00 3.36
2933 4005 8.664669 ACCATGACCAAGGTTTTATTCTAATT 57.335 30.769 0.00 0.00 33.39 1.40
2961 4033 3.118261 TCCAGCAAATCCTACCTAGCTTG 60.118 47.826 0.00 0.00 0.00 4.01
3010 4084 4.142447 CCTTCAAAGATCTTGCATGGAGTG 60.142 45.833 9.17 0.81 0.00 3.51
3012 4086 4.005650 TCAAAGATCTTGCATGGAGTGTC 58.994 43.478 9.17 0.00 0.00 3.67
3019 4093 6.716628 AGATCTTGCATGGAGTGTCTTAAAAA 59.283 34.615 0.00 0.00 0.00 1.94
3020 4094 6.317789 TCTTGCATGGAGTGTCTTAAAAAG 57.682 37.500 0.00 0.00 0.00 2.27
3078 4161 8.985922 TCAGCTATTCCAGATTATATAGTGCAT 58.014 33.333 0.00 0.00 0.00 3.96
3088 4171 9.597170 CAGATTATATAGTGCATATGCTCAAGT 57.403 33.333 27.13 13.26 42.66 3.16
3139 4227 9.762381 AACCTTTAATATCCTTTATTGACCACA 57.238 29.630 0.00 0.00 0.00 4.17
3164 4252 6.326843 ACTTCTACTTCAGGGAGTACAAAAGT 59.673 38.462 0.00 0.00 0.00 2.66
3265 4353 5.007626 TGACTTCATCAAACTTTCTGGTTCG 59.992 40.000 0.00 0.00 33.02 3.95
3268 4356 4.065088 TCATCAAACTTTCTGGTTCGGAG 58.935 43.478 0.00 0.00 0.00 4.63
3314 4403 6.234177 CAGGTTATTGAACTCTGTTTCTCCT 58.766 40.000 0.00 0.00 35.74 3.69
3316 4406 6.043243 AGGTTATTGAACTCTGTTTCTCCTCA 59.957 38.462 0.00 0.00 35.74 3.86
3320 4410 3.132289 TGAACTCTGTTTCTCCTCACGTT 59.868 43.478 0.00 0.00 0.00 3.99
3321 4411 4.340097 TGAACTCTGTTTCTCCTCACGTTA 59.660 41.667 0.00 0.00 0.00 3.18
3358 4448 1.087202 GTGCACACACGTGTCTTGGA 61.087 55.000 20.49 17.07 45.50 3.53
3359 4449 1.087202 TGCACACACGTGTCTTGGAC 61.087 55.000 20.49 7.72 45.50 4.02
3360 4450 0.810031 GCACACACGTGTCTTGGACT 60.810 55.000 20.49 0.00 45.50 3.85
3361 4451 1.209128 CACACACGTGTCTTGGACTC 58.791 55.000 20.49 0.00 42.83 3.36
3362 4452 1.112113 ACACACGTGTCTTGGACTCT 58.888 50.000 20.49 0.00 40.24 3.24
3363 4453 1.480954 ACACACGTGTCTTGGACTCTT 59.519 47.619 20.49 0.00 40.24 2.85
3364 4454 1.860950 CACACGTGTCTTGGACTCTTG 59.139 52.381 20.49 0.00 33.60 3.02
3365 4455 1.202533 ACACGTGTCTTGGACTCTTGG 60.203 52.381 17.22 0.00 32.34 3.61
3366 4456 1.120530 ACGTGTCTTGGACTCTTGGT 58.879 50.000 0.00 0.00 33.15 3.67
3367 4457 1.202533 ACGTGTCTTGGACTCTTGGTG 60.203 52.381 0.00 0.00 33.15 4.17
3378 4468 1.071385 ACTCTTGGTGAAGCTGGAGTG 59.929 52.381 0.00 0.00 33.56 3.51
3396 4486 6.720309 TGGAGTGATGTCCATTAAATTCTCA 58.280 36.000 0.00 0.00 41.99 3.27
3464 4554 7.891183 ACAATTGGCTACTCGATATCAATAC 57.109 36.000 10.83 0.00 0.00 1.89
3515 4607 7.851228 TGATACTGTATGTGGAGAGTTTGATT 58.149 34.615 4.79 0.00 0.00 2.57
3526 4618 4.393371 GGAGAGTTTGATTGCTTAGGTGAC 59.607 45.833 0.00 0.00 0.00 3.67
3531 4623 5.539955 AGTTTGATTGCTTAGGTGACCAAAT 59.460 36.000 3.63 0.00 0.00 2.32
3549 4641 8.091449 TGACCAAATTTCTGTTAAAACAACACT 58.909 29.630 0.00 0.00 38.66 3.55
3563 4655 3.299503 ACAACACTTTGGCTTCTTGGAT 58.700 40.909 0.00 0.00 37.00 3.41
3567 4659 2.094854 CACTTTGGCTTCTTGGATCTGC 60.095 50.000 0.00 0.00 0.00 4.26
3615 4707 2.247358 CCATTTTGTGCTTGGGGTACT 58.753 47.619 0.00 0.00 0.00 2.73
3623 4715 0.031414 GCTTGGGGTACTAGAGGGGA 60.031 60.000 0.00 0.00 0.00 4.81
3662 4754 0.844661 TACCACCTGCCACAAGGGAT 60.845 55.000 0.00 0.00 42.11 3.85
3791 5503 8.451748 CAAGCCTTACTCTGTTAAAAATCCTAC 58.548 37.037 0.00 0.00 0.00 3.18
3792 5504 7.919151 AGCCTTACTCTGTTAAAAATCCTACT 58.081 34.615 0.00 0.00 0.00 2.57
3793 5505 8.041919 AGCCTTACTCTGTTAAAAATCCTACTC 58.958 37.037 0.00 0.00 0.00 2.59
3794 5506 7.280428 GCCTTACTCTGTTAAAAATCCTACTCC 59.720 40.741 0.00 0.00 0.00 3.85
3795 5507 7.769507 CCTTACTCTGTTAAAAATCCTACTCCC 59.230 40.741 0.00 0.00 0.00 4.30
3796 5508 6.954352 ACTCTGTTAAAAATCCTACTCCCT 57.046 37.500 0.00 0.00 0.00 4.20
3797 5509 6.948589 ACTCTGTTAAAAATCCTACTCCCTC 58.051 40.000 0.00 0.00 0.00 4.30
3798 5510 6.070136 ACTCTGTTAAAAATCCTACTCCCTCC 60.070 42.308 0.00 0.00 0.00 4.30
3799 5511 5.093849 TGTTAAAAATCCTACTCCCTCCG 57.906 43.478 0.00 0.00 0.00 4.63
3800 5512 4.533311 TGTTAAAAATCCTACTCCCTCCGT 59.467 41.667 0.00 0.00 0.00 4.69
3801 5513 5.721000 TGTTAAAAATCCTACTCCCTCCGTA 59.279 40.000 0.00 0.00 0.00 4.02
3802 5514 6.213195 TGTTAAAAATCCTACTCCCTCCGTAA 59.787 38.462 0.00 0.00 0.00 3.18
3803 5515 4.750021 AAAATCCTACTCCCTCCGTAAC 57.250 45.455 0.00 0.00 0.00 2.50
3804 5516 2.378378 ATCCTACTCCCTCCGTAACC 57.622 55.000 0.00 0.00 0.00 2.85
3805 5517 1.302907 TCCTACTCCCTCCGTAACCT 58.697 55.000 0.00 0.00 0.00 3.50
3806 5518 2.492025 TCCTACTCCCTCCGTAACCTA 58.508 52.381 0.00 0.00 0.00 3.08
3807 5519 2.852449 TCCTACTCCCTCCGTAACCTAA 59.148 50.000 0.00 0.00 0.00 2.69
3808 5520 3.464833 TCCTACTCCCTCCGTAACCTAAT 59.535 47.826 0.00 0.00 0.00 1.73
3809 5521 4.665009 TCCTACTCCCTCCGTAACCTAATA 59.335 45.833 0.00 0.00 0.00 0.98
3810 5522 5.314306 TCCTACTCCCTCCGTAACCTAATAT 59.686 44.000 0.00 0.00 0.00 1.28
3811 5523 6.505344 TCCTACTCCCTCCGTAACCTAATATA 59.495 42.308 0.00 0.00 0.00 0.86
3812 5524 7.018550 TCCTACTCCCTCCGTAACCTAATATAA 59.981 40.741 0.00 0.00 0.00 0.98
3813 5525 7.338957 CCTACTCCCTCCGTAACCTAATATAAG 59.661 44.444 0.00 0.00 0.00 1.73
3814 5526 6.856757 ACTCCCTCCGTAACCTAATATAAGA 58.143 40.000 0.00 0.00 0.00 2.10
3815 5527 6.718912 ACTCCCTCCGTAACCTAATATAAGAC 59.281 42.308 0.00 0.00 0.00 3.01
3816 5528 5.707298 TCCCTCCGTAACCTAATATAAGACG 59.293 44.000 0.00 0.00 0.00 4.18
3817 5529 5.474876 CCCTCCGTAACCTAATATAAGACGT 59.525 44.000 0.00 0.00 0.00 4.34
3818 5530 6.015940 CCCTCCGTAACCTAATATAAGACGTT 60.016 42.308 0.00 0.00 0.00 3.99
3819 5531 7.428826 CCTCCGTAACCTAATATAAGACGTTT 58.571 38.462 0.00 0.00 0.00 3.60
3820 5532 7.922811 CCTCCGTAACCTAATATAAGACGTTTT 59.077 37.037 0.00 0.00 0.00 2.43
3821 5533 9.305925 CTCCGTAACCTAATATAAGACGTTTTT 57.694 33.333 0.00 0.00 0.00 1.94
3869 5581 9.813446 AAACGTCTTATATTAAGTTACAGAGGG 57.187 33.333 0.00 0.00 0.00 4.30
3870 5582 8.757982 ACGTCTTATATTAAGTTACAGAGGGA 57.242 34.615 0.00 0.00 0.00 4.20
3871 5583 8.848182 ACGTCTTATATTAAGTTACAGAGGGAG 58.152 37.037 0.00 0.00 0.00 4.30
3872 5584 8.848182 CGTCTTATATTAAGTTACAGAGGGAGT 58.152 37.037 0.00 0.00 0.00 3.85
3938 5652 4.036971 CCTAGAGATGAGGAACTTGGTACG 59.963 50.000 0.00 0.00 41.55 3.67
3964 5678 2.510906 CCATAGGGGGTGGCGAAG 59.489 66.667 0.00 0.00 0.00 3.79
3980 5694 3.951979 CGAAGCAAGCAACTAATAGGG 57.048 47.619 0.00 0.00 0.00 3.53
3981 5695 2.614057 CGAAGCAAGCAACTAATAGGGG 59.386 50.000 0.00 0.00 0.00 4.79
3982 5696 2.736670 AGCAAGCAACTAATAGGGGG 57.263 50.000 0.00 0.00 0.00 5.40
4018 5849 7.328737 AGCAAGTAACTAATAGGATTGTTCGT 58.671 34.615 0.00 0.00 0.00 3.85
4028 5859 4.853924 AGGATTGTTCGTTCATTTTGCT 57.146 36.364 0.00 0.00 0.00 3.91
4049 5880 1.464997 GTGCCCTCTCTTGTTTAAGCG 59.535 52.381 0.00 0.00 33.82 4.68
4053 5884 2.996621 CCCTCTCTTGTTTAAGCGTCAG 59.003 50.000 0.00 0.00 33.82 3.51
4069 5900 0.323816 TCAGCCTCATCCTCACGAGT 60.324 55.000 0.00 0.00 0.00 4.18
4110 5941 8.503458 AACTCAATTTCCATAGATCAACTCAG 57.497 34.615 0.00 0.00 0.00 3.35
4199 6031 5.112686 GGTTAATGTTCAAAAGGCACACAA 58.887 37.500 0.00 0.00 0.00 3.33
4207 6039 3.068024 TCAAAAGGCACACAAAGGACATC 59.932 43.478 0.00 0.00 0.00 3.06
4225 6057 0.103937 TCGCCAAAAGCCCAAAACAG 59.896 50.000 0.00 0.00 38.78 3.16
4228 6060 1.072173 GCCAAAAGCCCAAAACAGGAT 59.928 47.619 0.00 0.00 34.35 3.24
4254 6086 4.256920 AGATAAACAGACCTGTGATGTGC 58.743 43.478 3.13 0.00 44.13 4.57
4264 6097 4.121317 ACCTGTGATGTGCATTTTGTTTG 58.879 39.130 0.00 0.00 0.00 2.93
4296 6129 6.325596 TCTTACAAGATCTCATGTCTTCACG 58.674 40.000 3.29 0.00 33.82 4.35
4304 6137 3.057245 TCTCATGTCTTCACGTTCTCCAG 60.057 47.826 0.00 0.00 0.00 3.86
4308 6141 3.973657 TGTCTTCACGTTCTCCAGTTAC 58.026 45.455 0.00 0.00 0.00 2.50
4327 6160 6.695278 CAGTTACTGAATTTTTGCTCCGAAAA 59.305 34.615 6.50 0.00 32.44 2.29
4329 6162 5.262588 ACTGAATTTTTGCTCCGAAAACT 57.737 34.783 0.00 0.00 30.74 2.66
4494 6327 2.037902 TCGTGCAGTGGACCATTTTCTA 59.962 45.455 9.40 0.00 0.00 2.10
4497 6330 3.568007 GTGCAGTGGACCATTTTCTAACA 59.432 43.478 2.86 0.00 0.00 2.41
4533 6366 7.973048 ATCTACTGTTAACTACCATGGAGAA 57.027 36.000 21.47 2.10 0.00 2.87
4586 6419 5.192927 CCTAACATGTTCCTGCCTTATGAA 58.807 41.667 15.85 0.00 0.00 2.57
4590 6423 6.699575 ACATGTTCCTGCCTTATGAAATAC 57.300 37.500 0.00 0.00 0.00 1.89
4591 6424 5.296780 ACATGTTCCTGCCTTATGAAATACG 59.703 40.000 0.00 0.00 0.00 3.06
4592 6425 4.839121 TGTTCCTGCCTTATGAAATACGT 58.161 39.130 0.00 0.00 0.00 3.57
4593 6426 5.979993 TGTTCCTGCCTTATGAAATACGTA 58.020 37.500 0.00 0.00 0.00 3.57
4594 6427 6.588204 TGTTCCTGCCTTATGAAATACGTAT 58.412 36.000 1.14 1.14 0.00 3.06
4595 6428 7.051623 TGTTCCTGCCTTATGAAATACGTATT 58.948 34.615 15.07 15.07 0.00 1.89
4636 6469 9.439500 GTAGAGGATAGATCTAATGTAACTCGT 57.561 37.037 6.52 0.00 31.27 4.18
4646 6480 6.624423 TCTAATGTAACTCGTTAACTGTCCC 58.376 40.000 3.71 0.00 0.00 4.46
4673 6507 5.363005 TCCCAATTTCGTTTTTCCACCTTAA 59.637 36.000 0.00 0.00 0.00 1.85
4694 6528 8.472683 CTTAAAAGGAGATGAAGTGAGTACAG 57.527 38.462 0.00 0.00 0.00 2.74
4719 6553 9.264719 AGTCATTTGATTGGAAATTTTCAAGAC 57.735 29.630 16.78 15.57 30.45 3.01
4723 6557 7.966246 TTGATTGGAAATTTTCAAGACCATG 57.034 32.000 16.78 0.00 0.00 3.66
4834 6668 5.186603 TCATAGAAGCACAAGATCAGAGTGT 59.813 40.000 11.98 1.05 35.75 3.55
4852 6686 6.823689 CAGAGTGTGCCTAATTTTGTATAGGT 59.176 38.462 0.00 0.00 40.71 3.08
4880 6714 7.956420 TTTCGTCATAAGTTATGTTCACTGT 57.044 32.000 19.85 0.00 37.45 3.55
4888 6722 4.917385 AGTTATGTTCACTGTTATGGCCA 58.083 39.130 8.56 8.56 0.00 5.36
4890 6724 2.949177 TGTTCACTGTTATGGCCAGT 57.051 45.000 13.05 0.00 43.76 4.00
4910 6750 5.291178 CAGTGAGGCACAAAATTTGATTCA 58.709 37.500 13.19 7.28 36.74 2.57
4915 6755 2.412770 GCACAAAATTTGATTCAGGGCG 59.587 45.455 13.19 0.00 0.00 6.13
4934 6779 5.123344 AGGGCGAACACATTTCTATGTAAAC 59.877 40.000 0.00 0.00 43.07 2.01
4935 6780 5.123344 GGGCGAACACATTTCTATGTAAACT 59.877 40.000 0.00 0.00 43.07 2.66
4936 6781 6.021596 GGCGAACACATTTCTATGTAAACTG 58.978 40.000 0.00 0.00 43.07 3.16
4937 6782 6.348213 GGCGAACACATTTCTATGTAAACTGT 60.348 38.462 0.00 0.00 43.07 3.55
4938 6783 7.148540 GGCGAACACATTTCTATGTAAACTGTA 60.149 37.037 0.00 0.00 43.07 2.74
4939 6784 8.225107 GCGAACACATTTCTATGTAAACTGTAA 58.775 33.333 0.00 0.00 43.07 2.41
4958 6809 8.827832 ACTGTAAAGTATGGTGGTAGTATACA 57.172 34.615 5.50 0.00 45.43 2.29
5159 7424 4.986659 TGACCGTTTCTAGCTTTAACTGTC 59.013 41.667 16.02 16.02 36.88 3.51
5201 7466 0.912486 AGTTCCGGAATGAAGAGGGG 59.088 55.000 22.04 0.00 0.00 4.79
5315 7580 7.906160 ACTCTGTACGTGTTAATTGCATATTC 58.094 34.615 0.00 0.00 0.00 1.75
5369 7634 9.672673 CAAAGACCTCAAGGATTCTTATTCTAA 57.327 33.333 2.30 0.00 38.94 2.10
5417 7682 0.679505 TCCACAGAACAGGGAGAACG 59.320 55.000 0.00 0.00 0.00 3.95
5450 7715 5.067805 GGGAGCCAAAGGTATTAATCACTTG 59.932 44.000 0.00 0.00 0.00 3.16
5471 7743 5.922739 TGTTTGCTGTAACAGACACATAG 57.077 39.130 0.00 0.00 33.31 2.23
5472 7744 5.606505 TGTTTGCTGTAACAGACACATAGA 58.393 37.500 0.00 0.00 33.31 1.98
5475 7747 4.556233 TGCTGTAACAGACACATAGACAC 58.444 43.478 0.00 0.00 33.31 3.67
5480 7752 7.050970 TGTAACAGACACATAGACACTTTCT 57.949 36.000 0.00 0.00 33.64 2.52
5481 7753 6.923508 TGTAACAGACACATAGACACTTTCTG 59.076 38.462 0.00 0.00 32.01 3.02
5491 7763 2.717639 ACACTTTCTGTCAGCACCTT 57.282 45.000 0.00 0.00 0.00 3.50
5493 7765 2.092968 ACACTTTCTGTCAGCACCTTGA 60.093 45.455 0.00 0.00 0.00 3.02
5494 7766 3.144506 CACTTTCTGTCAGCACCTTGAT 58.855 45.455 0.00 0.00 0.00 2.57
5495 7767 3.188048 CACTTTCTGTCAGCACCTTGATC 59.812 47.826 0.00 0.00 0.00 2.92
5496 7768 3.181451 ACTTTCTGTCAGCACCTTGATCA 60.181 43.478 0.00 0.00 0.00 2.92
5497 7769 2.462456 TCTGTCAGCACCTTGATCAC 57.538 50.000 0.00 0.00 0.00 3.06
5498 7770 1.073964 CTGTCAGCACCTTGATCACG 58.926 55.000 0.00 0.00 0.00 4.35
5499 7771 0.392706 TGTCAGCACCTTGATCACGT 59.607 50.000 0.00 0.00 0.00 4.49
5500 7772 1.616374 TGTCAGCACCTTGATCACGTA 59.384 47.619 0.00 0.00 0.00 3.57
5501 7773 2.233676 TGTCAGCACCTTGATCACGTAT 59.766 45.455 0.00 0.00 0.00 3.06
5502 7774 3.262420 GTCAGCACCTTGATCACGTATT 58.738 45.455 0.00 0.00 0.00 1.89
5503 7775 3.062639 GTCAGCACCTTGATCACGTATTG 59.937 47.826 0.00 0.00 0.00 1.90
5504 7776 2.009774 AGCACCTTGATCACGTATTGC 58.990 47.619 0.00 2.29 0.00 3.56
5505 7777 1.737236 GCACCTTGATCACGTATTGCA 59.263 47.619 0.00 0.00 0.00 4.08
5506 7778 2.476185 GCACCTTGATCACGTATTGCAC 60.476 50.000 0.00 0.00 0.00 4.57
5507 7779 3.002791 CACCTTGATCACGTATTGCACT 58.997 45.455 0.00 0.00 0.00 4.40
5508 7780 3.002791 ACCTTGATCACGTATTGCACTG 58.997 45.455 0.00 0.00 0.00 3.66
5581 7859 0.738975 CATGCATGCTCTTGACCTGG 59.261 55.000 20.33 0.00 0.00 4.45
5582 7860 0.622136 ATGCATGCTCTTGACCTGGA 59.378 50.000 20.33 0.00 0.00 3.86
5584 7862 1.839354 TGCATGCTCTTGACCTGGATA 59.161 47.619 20.33 0.00 0.00 2.59
5588 7900 4.378774 CATGCTCTTGACCTGGATAAGAG 58.621 47.826 25.94 25.94 46.32 2.85
5597 7909 9.083422 TCTTGACCTGGATAAGAGATACTAATG 57.917 37.037 0.00 0.00 0.00 1.90
5600 7912 9.029368 TGACCTGGATAAGAGATACTAATGATG 57.971 37.037 0.00 0.00 0.00 3.07
5602 7914 9.386122 ACCTGGATAAGAGATACTAATGATGTT 57.614 33.333 0.00 0.00 0.00 2.71
5634 7946 6.546403 AGCAGAGTCTAATCATGATTTGCAAT 59.454 34.615 28.85 16.84 32.50 3.56
5654 7967 5.356470 GCAATTCTAGAAAAGAGATGGCAGT 59.644 40.000 9.71 0.00 35.05 4.40
5675 7991 6.936968 AGTAGTTAGGAACTTCTGATTGGT 57.063 37.500 0.00 0.00 42.81 3.67
5685 8001 9.784531 AGGAACTTCTGATTGGTATGTATTATG 57.215 33.333 0.00 0.00 27.25 1.90
5720 8061 7.622502 TTAGAAATGAGATGATGGGAGATGA 57.377 36.000 0.00 0.00 0.00 2.92
5856 8216 4.280436 ACTCACGTATTGTCATTTCCCA 57.720 40.909 0.00 0.00 0.00 4.37
5922 8282 2.613691 GGTTTAGCGACAAGGATCGAA 58.386 47.619 0.00 0.00 45.13 3.71
5925 8285 2.846039 TAGCGACAAGGATCGAAGAC 57.154 50.000 0.00 0.00 45.13 3.01
6138 8531 2.229792 GCCATCAAGGACACAACTTCA 58.770 47.619 0.00 0.00 41.22 3.02
6192 8585 0.318441 CTTCGTCCAGGAAGCACTCA 59.682 55.000 0.00 0.00 37.24 3.41
6298 8691 1.293498 GTCGGGAAGAGCAGCAGAA 59.707 57.895 0.00 0.00 0.00 3.02
6309 8702 3.249189 AGCAGAACCAGGCCGGAA 61.249 61.111 18.74 0.00 38.63 4.30
6349 8742 5.338463 GCTCTGAATAAGGTGGGAAGTAAGT 60.338 44.000 0.00 0.00 0.00 2.24
6458 8852 9.436957 CTGTAACCTGTAAATATCAGTGACTTT 57.563 33.333 0.00 1.27 0.00 2.66
6464 8858 9.612620 CCTGTAAATATCAGTGACTTTGTTTTC 57.387 33.333 11.11 0.51 0.00 2.29
6549 8943 3.562182 TGAGATCTTACCACGGCATCTA 58.438 45.455 0.00 0.00 0.00 1.98
6558 8952 9.959721 ATCTTACCACGGCATCTATAATAAAAT 57.040 29.630 0.00 0.00 0.00 1.82
6595 8991 8.624028 GTGCTTTTATTGTTTGTATACACGAAC 58.376 33.333 4.68 9.12 45.72 3.95
6630 9026 2.620585 GTCTTGCCCAGATGCTAAATCC 59.379 50.000 0.00 0.00 32.60 3.01
6635 9031 2.620585 GCCCAGATGCTAAATCCTTGTC 59.379 50.000 0.00 0.00 0.00 3.18
6639 9035 4.334759 CCAGATGCTAAATCCTTGTCACTG 59.665 45.833 0.00 0.00 0.00 3.66
6653 9049 4.811555 TGTCACTGCACATCTTTGTTAC 57.188 40.909 0.00 0.00 32.34 2.50
6658 9103 4.751600 CACTGCACATCTTTGTTACTCTCA 59.248 41.667 0.00 0.00 32.34 3.27
6659 9104 4.752101 ACTGCACATCTTTGTTACTCTCAC 59.248 41.667 0.00 0.00 32.34 3.51
6662 9107 4.377841 GCACATCTTTGTTACTCTCACAGC 60.378 45.833 0.00 0.00 32.34 4.40
6666 9111 1.729586 TTGTTACTCTCACAGCCCCT 58.270 50.000 0.00 0.00 0.00 4.79
6670 9115 2.024176 TACTCTCACAGCCCCTGAAA 57.976 50.000 0.00 0.00 35.18 2.69
6674 9119 1.372087 CTCACAGCCCCTGAAATCGC 61.372 60.000 0.00 0.00 35.18 4.58
6685 9130 1.608590 CTGAAATCGCCACAAACCAGT 59.391 47.619 0.00 0.00 0.00 4.00
6688 9133 1.821216 AATCGCCACAAACCAGTAGG 58.179 50.000 0.00 0.00 42.21 3.18
6689 9134 0.676782 ATCGCCACAAACCAGTAGGC 60.677 55.000 0.00 0.00 41.86 3.93
6691 9136 1.852067 CGCCACAAACCAGTAGGCAC 61.852 60.000 0.00 0.00 45.47 5.01
6718 9176 6.293004 AGGATTGTAGAAGTTTCTGGAGAG 57.707 41.667 4.67 0.00 38.19 3.20
6719 9177 4.873259 GGATTGTAGAAGTTTCTGGAGAGC 59.127 45.833 4.67 0.00 38.19 4.09
6720 9178 3.577649 TGTAGAAGTTTCTGGAGAGCG 57.422 47.619 4.67 0.00 38.19 5.03
6721 9179 2.231478 TGTAGAAGTTTCTGGAGAGCGG 59.769 50.000 4.67 0.00 38.19 5.52
6722 9180 1.633774 AGAAGTTTCTGGAGAGCGGA 58.366 50.000 0.00 0.00 35.89 5.54
6723 9181 2.183679 AGAAGTTTCTGGAGAGCGGAT 58.816 47.619 0.00 0.00 35.89 4.18
6724 9182 3.366396 AGAAGTTTCTGGAGAGCGGATA 58.634 45.455 0.00 0.00 35.89 2.59
6725 9183 3.964031 AGAAGTTTCTGGAGAGCGGATAT 59.036 43.478 0.00 0.00 35.89 1.63
6726 9184 4.038642 AGAAGTTTCTGGAGAGCGGATATC 59.961 45.833 0.00 0.00 35.89 1.63
6727 9185 3.571590 AGTTTCTGGAGAGCGGATATCT 58.428 45.455 2.05 0.00 0.00 1.98
6728 9186 3.964031 AGTTTCTGGAGAGCGGATATCTT 59.036 43.478 2.05 0.00 0.00 2.40
6735 9193 4.061596 GGAGAGCGGATATCTTTCCAAAG 58.938 47.826 2.05 0.00 35.55 2.77
6736 9194 4.061596 GAGAGCGGATATCTTTCCAAAGG 58.938 47.826 2.05 0.00 36.67 3.11
6737 9195 3.711704 AGAGCGGATATCTTTCCAAAGGA 59.288 43.478 2.05 0.00 36.67 3.36
6756 9214 2.293399 GGAAAGAGCGAAAGGAAAAGCA 59.707 45.455 0.00 0.00 0.00 3.91
6780 9238 9.921637 GCACAGAGCTTAATAAATACTATCTCT 57.078 33.333 0.00 0.00 41.15 3.10
7156 9620 1.399714 CTGCACCATTGATGCCTCAT 58.600 50.000 0.00 0.00 42.69 2.90
7263 9727 1.754803 CCTATATATGAAGCGCCCCGA 59.245 52.381 2.29 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.625897 CTCGTCCACTGGTGCCCA 61.626 66.667 0.00 0.00 0.00 5.36
10 11 2.433318 GCTCTCGTCCACTGGTGC 60.433 66.667 0.00 0.00 0.00 5.01
17 18 0.827925 AACTGTGGAGCTCTCGTCCA 60.828 55.000 14.64 0.00 42.06 4.02
31 32 1.404181 CGATCCACGGATGTCAACTGT 60.404 52.381 2.54 0.00 38.46 3.55
44 45 0.242825 TCGACACTTGTCCGATCCAC 59.757 55.000 3.77 0.00 41.86 4.02
47 48 0.167470 TCGTCGACACTTGTCCGATC 59.833 55.000 17.16 0.00 41.86 3.69
48 49 0.109873 GTCGTCGACACTTGTCCGAT 60.110 55.000 20.28 0.00 39.54 4.18
49 50 1.162181 AGTCGTCGACACTTGTCCGA 61.162 55.000 26.17 0.93 41.86 4.55
50 51 0.725118 GAGTCGTCGACACTTGTCCG 60.725 60.000 26.17 0.00 41.86 4.79
51 52 0.386985 GGAGTCGTCGACACTTGTCC 60.387 60.000 26.17 19.11 41.86 4.02
52 53 0.725118 CGGAGTCGTCGACACTTGTC 60.725 60.000 26.17 14.41 41.47 3.18
77 78 1.887854 TGACCTGAACACCGATTACGA 59.112 47.619 0.00 0.00 42.66 3.43
91 92 4.516321 TCAGTGATGTTCAATGTTGACCTG 59.484 41.667 5.05 0.00 42.45 4.00
100 101 5.078949 TCCAACCATTCAGTGATGTTCAAT 58.921 37.500 0.00 0.00 0.00 2.57
131 132 3.345028 AGCAGCCATCCCAGCCTT 61.345 61.111 0.00 0.00 0.00 4.35
215 217 1.819208 CGGGCAATCGCAATCCTGA 60.819 57.895 0.00 0.00 41.24 3.86
217 219 2.516930 CCGGGCAATCGCAATCCT 60.517 61.111 0.00 0.00 41.24 3.24
285 287 3.577313 GGCGAAAGAGGCGATGGC 61.577 66.667 0.00 0.00 38.90 4.40
338 340 4.059459 GCAACGACCGACACTGCG 62.059 66.667 0.00 0.00 0.00 5.18
339 341 4.059459 CGCAACGACCGACACTGC 62.059 66.667 0.00 0.00 0.00 4.40
340 342 2.142418 GAACGCAACGACCGACACTG 62.142 60.000 0.00 0.00 0.00 3.66
341 343 1.947642 GAACGCAACGACCGACACT 60.948 57.895 0.00 0.00 0.00 3.55
342 344 2.542896 GAACGCAACGACCGACAC 59.457 61.111 0.00 0.00 0.00 3.67
343 345 2.659244 GGAACGCAACGACCGACA 60.659 61.111 0.00 0.00 0.00 4.35
404 406 1.579084 GCCAATAACGTTGGTCGGCA 61.579 55.000 20.95 0.00 44.69 5.69
414 416 2.106844 GCCCAAGGAGCCAATAACG 58.893 57.895 0.00 0.00 0.00 3.18
428 430 3.645660 TTGTGATGGAGCGGCCCA 61.646 61.111 11.71 11.71 41.05 5.36
446 448 2.629050 ATCTGCCCCGTCATTCGTCG 62.629 60.000 0.00 0.00 37.94 5.12
459 461 1.021390 CACCACTGTTCCGATCTGCC 61.021 60.000 0.00 0.00 0.00 4.85
460 462 1.021390 CCACCACTGTTCCGATCTGC 61.021 60.000 0.00 0.00 0.00 4.26
462 464 1.194781 AGCCACCACTGTTCCGATCT 61.195 55.000 0.00 0.00 0.00 2.75
464 466 1.003355 CAGCCACCACTGTTCCGAT 60.003 57.895 0.00 0.00 32.78 4.18
509 511 3.431725 CACGAAAGCCCGCCCTTC 61.432 66.667 0.00 0.00 0.00 3.46
515 517 0.378962 TTGTTTCACACGAAAGCCCG 59.621 50.000 0.00 0.00 41.75 6.13
539 542 2.415776 CCTGCGCATTTGGACAATTTT 58.584 42.857 12.24 0.00 0.00 1.82
541 544 0.247185 CCCTGCGCATTTGGACAATT 59.753 50.000 12.24 0.00 0.00 2.32
560 563 4.149598 ACCTATCCAAAACCAAGGTGAAC 58.850 43.478 0.00 0.00 39.10 3.18
581 584 3.194116 TGTAGAACTCACATAACGGGGAC 59.806 47.826 0.00 0.00 0.00 4.46
583 586 3.880047 TGTAGAACTCACATAACGGGG 57.120 47.619 0.00 0.00 0.00 5.73
605 608 0.390603 CAGGCATTTGGACGTCCGTA 60.391 55.000 28.70 19.34 39.43 4.02
606 609 1.671054 CAGGCATTTGGACGTCCGT 60.671 57.895 28.70 15.03 39.43 4.69
611 614 0.667184 GGTTTGCAGGCATTTGGACG 60.667 55.000 0.00 0.00 0.00 4.79
619 622 0.908198 AACAAAAGGGTTTGCAGGCA 59.092 45.000 0.00 0.00 46.84 4.75
623 626 3.526534 GCACTAAACAAAAGGGTTTGCA 58.473 40.909 0.00 0.00 46.84 4.08
653 656 2.017049 CGGACCAACATCTGAAATCCC 58.983 52.381 0.00 0.00 0.00 3.85
664 667 2.656002 TCAAATTTGTCCGGACCAACA 58.344 42.857 31.19 11.15 0.00 3.33
665 668 3.934457 ATCAAATTTGTCCGGACCAAC 57.066 42.857 31.19 8.22 0.00 3.77
669 672 7.083875 TCATCTTAATCAAATTTGTCCGGAC 57.916 36.000 28.17 28.17 0.00 4.79
689 692 7.964011 TCCGACGGTTTAAACATTTTAATCATC 59.036 33.333 19.57 0.00 0.00 2.92
690 693 7.818642 TCCGACGGTTTAAACATTTTAATCAT 58.181 30.769 19.57 0.00 0.00 2.45
693 697 8.728833 TGTATCCGACGGTTTAAACATTTTAAT 58.271 29.630 19.57 8.66 0.00 1.40
701 705 5.341407 TGTTTGTATCCGACGGTTTAAAC 57.659 39.130 14.79 18.80 0.00 2.01
705 709 4.789784 CAAATGTTTGTATCCGACGGTTT 58.210 39.130 14.79 5.55 33.59 3.27
717 721 4.856115 CAAACCTTTCGCAAATGTTTGT 57.144 36.364 20.72 3.40 44.63 2.83
728 732 2.289547 ACGTGGATCAACAAACCTTTCG 59.710 45.455 0.13 0.00 0.00 3.46
745 749 2.616842 AGTTTAGGGCAACTTCAACGTG 59.383 45.455 0.00 0.00 32.81 4.49
796 800 2.285756 TCAACGTTTTTCACTAGCACCG 59.714 45.455 0.00 0.00 0.00 4.94
944 963 1.682684 GAGGAGTGGAAGGGCGAGA 60.683 63.158 0.00 0.00 0.00 4.04
1266 1683 0.318441 CGAAGCTCTCCACCTCAACA 59.682 55.000 0.00 0.00 0.00 3.33
1347 1764 1.226717 GACGCACTGGATCTCGGTC 60.227 63.158 0.00 0.00 31.34 4.79
1455 1872 1.321074 GGGTCAGTCCGAGTACCTGG 61.321 65.000 0.00 0.00 37.00 4.45
1464 1881 2.076863 GTGAAAAGATGGGTCAGTCCG 58.923 52.381 0.00 0.00 37.00 4.79
1469 1886 3.689161 CGCTAATGTGAAAAGATGGGTCA 59.311 43.478 0.00 0.00 0.00 4.02
1494 1917 6.319658 GCAAATATACCTGCAGGCACATATAT 59.680 38.462 33.06 25.28 38.48 0.86
1495 1918 5.647658 GCAAATATACCTGCAGGCACATATA 59.352 40.000 33.06 24.30 38.48 0.86
1552 1975 3.414549 CAACTTTGCACCTAACAACGT 57.585 42.857 0.00 0.00 31.57 3.99
1575 1998 4.622933 GCACCAGGTTCACTACACATATGA 60.623 45.833 10.38 0.00 0.00 2.15
1602 2025 1.089920 CTCGCTTGGAAATGGACCAG 58.910 55.000 0.00 0.00 38.70 4.00
1605 2028 0.729690 GCTCTCGCTTGGAAATGGAC 59.270 55.000 0.00 0.00 0.00 4.02
1645 2070 0.319383 ACTCGATCATGAGCCGATGC 60.319 55.000 19.07 0.00 39.68 3.91
1649 2074 2.550180 TCTCTTACTCGATCATGAGCCG 59.450 50.000 5.18 9.51 39.68 5.52
1651 2076 5.181690 AGTTCTCTTACTCGATCATGAGC 57.818 43.478 0.00 0.00 39.68 4.26
1704 2369 0.952984 GGTGCTCTGTCACTGGCTTC 60.953 60.000 0.00 0.00 37.16 3.86
1728 2393 1.262640 TTGGCCCTCCTCCGTAGTTC 61.263 60.000 0.00 0.00 0.00 3.01
1731 2396 0.546598 AAATTGGCCCTCCTCCGTAG 59.453 55.000 0.00 0.00 0.00 3.51
1735 2400 1.340697 ACGTTAAATTGGCCCTCCTCC 60.341 52.381 0.00 0.00 0.00 4.30
1765 2430 6.176896 TGTAATGGTGTCTAATGCTAAGCAA 58.823 36.000 0.00 0.00 43.62 3.91
1797 2462 5.049405 CACCCTGATCAAACACTAAACTGTC 60.049 44.000 0.00 0.00 0.00 3.51
1836 2501 3.069443 CCTTCCATTAGACCTCTCAGCTC 59.931 52.174 0.00 0.00 0.00 4.09
1864 2536 7.500992 TGGCTCATCCAGTTACTATTCTTAAG 58.499 38.462 0.00 0.00 40.72 1.85
1943 2615 6.601332 ACTAATCCAGTTTTTCTCCAACTCA 58.399 36.000 0.00 0.00 31.59 3.41
1946 2618 6.877611 TGACTAATCCAGTTTTTCTCCAAC 57.122 37.500 0.00 0.00 37.72 3.77
2055 2728 3.425892 GTCTACGCAAGACGAAGCTAGAA 60.426 47.826 0.00 0.00 45.05 2.10
2072 2745 1.279749 CCAAAGGGGGAGGGGTCTAC 61.280 65.000 0.00 0.00 0.00 2.59
2160 2836 7.651808 ACATGGTAAGAGAAAACACTCATTTG 58.348 34.615 0.00 0.00 39.14 2.32
2178 2854 9.787435 AGATGTACTCAACTTTTAAACATGGTA 57.213 29.630 0.00 0.00 0.00 3.25
2309 3378 1.552792 TCATTGACATACCCAGCGTCA 59.447 47.619 0.00 0.00 37.87 4.35
2313 3382 1.678101 GGCTTCATTGACATACCCAGC 59.322 52.381 0.00 0.00 0.00 4.85
2379 3448 0.036952 GAAGTGCTGCTACCTGCTCA 60.037 55.000 0.00 0.00 43.37 4.26
2412 3482 9.486123 TGGATATCAAATCATAGTTCCCAAAAA 57.514 29.630 4.83 0.00 0.00 1.94
2417 3487 7.884877 TGACATGGATATCAAATCATAGTTCCC 59.115 37.037 4.83 0.00 0.00 3.97
2418 3488 8.853077 TGACATGGATATCAAATCATAGTTCC 57.147 34.615 4.83 0.00 0.00 3.62
2437 3507 6.017325 CACATAAACGACAGTCAATGACATG 58.983 40.000 16.38 12.62 34.60 3.21
2438 3508 5.931724 TCACATAAACGACAGTCAATGACAT 59.068 36.000 16.38 2.85 34.60 3.06
2499 3569 4.260579 CGAAAACGTGCATGATGGCTTATA 60.261 41.667 14.17 0.00 34.04 0.98
2505 3575 0.521291 ACCGAAAACGTGCATGATGG 59.479 50.000 14.17 8.77 0.00 3.51
2682 3752 8.450578 TTCTGGGTAGTAATTATTTGCTCATG 57.549 34.615 0.00 0.00 0.00 3.07
2704 3774 7.260603 GCAAACAAATGCAGGATAGTAATTCT 58.739 34.615 0.00 0.00 45.70 2.40
2705 3775 7.455331 GCAAACAAATGCAGGATAGTAATTC 57.545 36.000 0.00 0.00 45.70 2.17
2724 3795 6.128172 AGTGATAAACTACTGCATCAGCAAAC 60.128 38.462 0.00 0.00 44.10 2.93
2736 3807 8.375506 TGAACTCATTCCAAGTGATAAACTACT 58.624 33.333 0.00 0.00 33.98 2.57
2737 3808 8.547967 TGAACTCATTCCAAGTGATAAACTAC 57.452 34.615 0.00 0.00 33.98 2.73
2774 3846 0.325933 TGCCTCATCCAGAACCTGTG 59.674 55.000 0.00 0.00 0.00 3.66
2775 3847 0.617413 CTGCCTCATCCAGAACCTGT 59.383 55.000 0.00 0.00 32.03 4.00
2796 3868 3.457610 AAGCCTTGGTCAAACATTGTG 57.542 42.857 0.00 0.00 0.00 3.33
2814 3886 6.787085 AACTTTCGTATGTCTTCTCCAAAG 57.213 37.500 0.00 0.00 0.00 2.77
2832 3904 6.530019 TTCTTCAAAGGAGCAAGAAACTTT 57.470 33.333 0.00 0.00 34.04 2.66
2933 4005 1.138266 GTAGGATTTGCTGGACGCCTA 59.862 52.381 0.00 0.00 38.05 3.93
2953 4025 9.610705 ACAGCATATCATATTTATCAAGCTAGG 57.389 33.333 0.00 0.00 0.00 3.02
3012 4086 9.723447 GAGAAAAACAGGAGAAGTCTTTTTAAG 57.277 33.333 0.00 0.00 0.00 1.85
3019 4093 6.240549 TCTTGAGAAAAACAGGAGAAGTCT 57.759 37.500 0.00 0.00 0.00 3.24
3020 4094 6.238511 GGTTCTTGAGAAAAACAGGAGAAGTC 60.239 42.308 0.00 0.00 35.58 3.01
3030 4105 7.264373 TGAGAAGATGGTTCTTGAGAAAAAC 57.736 36.000 0.00 0.00 42.34 2.43
3075 4158 2.648059 ACCAAGGACTTGAGCATATGC 58.352 47.619 20.36 20.36 42.93 3.14
3078 4161 5.885912 GGAAAATACCAAGGACTTGAGCATA 59.114 40.000 13.35 1.73 42.93 3.14
3088 4171 6.723515 TCACAAATCATGGAAAATACCAAGGA 59.276 34.615 0.00 0.00 43.47 3.36
3139 4227 6.326843 ACTTTTGTACTCCCTGAAGTAGAAGT 59.673 38.462 0.00 0.00 36.65 3.01
3164 4252 5.500234 ACCTTCAAATTCCTCATCGATCAA 58.500 37.500 0.00 0.00 0.00 2.57
3265 4353 1.273886 AGAGCCTCGAGTTTGTTCTCC 59.726 52.381 12.31 0.00 0.00 3.71
3268 4356 1.273886 AGGAGAGCCTCGAGTTTGTTC 59.726 52.381 12.31 3.84 42.19 3.18
3314 4403 4.930463 TGCGCATAAAAAGATAACGTGA 57.070 36.364 5.66 0.00 0.00 4.35
3316 4406 6.905076 CACTTATGCGCATAAAAAGATAACGT 59.095 34.615 35.05 24.97 33.34 3.99
3348 4438 1.068588 TCACCAAGAGTCCAAGACACG 59.931 52.381 0.00 0.00 34.60 4.49
3358 4448 1.071385 CACTCCAGCTTCACCAAGAGT 59.929 52.381 0.00 0.00 35.02 3.24
3359 4449 1.345741 TCACTCCAGCTTCACCAAGAG 59.654 52.381 0.00 0.00 0.00 2.85
3360 4450 1.423584 TCACTCCAGCTTCACCAAGA 58.576 50.000 0.00 0.00 0.00 3.02
3361 4451 2.082231 CATCACTCCAGCTTCACCAAG 58.918 52.381 0.00 0.00 0.00 3.61
3362 4452 1.421268 ACATCACTCCAGCTTCACCAA 59.579 47.619 0.00 0.00 0.00 3.67
3363 4453 1.002430 GACATCACTCCAGCTTCACCA 59.998 52.381 0.00 0.00 0.00 4.17
3364 4454 1.677217 GGACATCACTCCAGCTTCACC 60.677 57.143 0.00 0.00 0.00 4.02
3365 4455 1.002430 TGGACATCACTCCAGCTTCAC 59.998 52.381 0.00 0.00 35.23 3.18
3366 4456 1.351076 TGGACATCACTCCAGCTTCA 58.649 50.000 0.00 0.00 35.23 3.02
3367 4457 2.706339 ATGGACATCACTCCAGCTTC 57.294 50.000 0.00 0.00 43.82 3.86
3378 4468 8.937634 AGCAAATTGAGAATTTAATGGACATC 57.062 30.769 0.00 0.00 38.97 3.06
3396 4486 9.247861 ACCAAGAACAAGATAGATAAGCAAATT 57.752 29.630 0.00 0.00 0.00 1.82
3501 4593 4.154918 CACCTAAGCAATCAAACTCTCCAC 59.845 45.833 0.00 0.00 0.00 4.02
3515 4607 4.469657 ACAGAAATTTGGTCACCTAAGCA 58.530 39.130 0.00 0.00 0.00 3.91
3526 4618 9.540431 CAAAGTGTTGTTTTAACAGAAATTTGG 57.460 29.630 16.39 0.00 40.50 3.28
3531 4623 6.459923 AGCCAAAGTGTTGTTTTAACAGAAA 58.540 32.000 0.00 0.00 40.50 2.52
3549 4641 1.167851 CGCAGATCCAAGAAGCCAAA 58.832 50.000 0.00 0.00 0.00 3.28
3615 4707 0.042731 CTCCCTTGTGGTCCCCTCTA 59.957 60.000 0.00 0.00 34.77 2.43
3623 4715 0.398318 GAGTGAAGCTCCCTTGTGGT 59.602 55.000 0.00 0.00 38.27 4.16
3636 4728 0.685097 GTGGCAGGTGGTAGAGTGAA 59.315 55.000 0.00 0.00 0.00 3.18
3662 4754 3.076621 GCTGTTCATGACCATGACTCAA 58.923 45.455 11.83 0.00 46.49 3.02
3791 5503 6.128063 CGTCTTATATTAGGTTACGGAGGGAG 60.128 46.154 0.00 0.00 0.00 4.30
3792 5504 5.707298 CGTCTTATATTAGGTTACGGAGGGA 59.293 44.000 0.00 0.00 0.00 4.20
3793 5505 5.474876 ACGTCTTATATTAGGTTACGGAGGG 59.525 44.000 6.46 0.00 33.44 4.30
3794 5506 6.566197 ACGTCTTATATTAGGTTACGGAGG 57.434 41.667 6.46 0.00 33.44 4.30
3795 5507 8.862550 AAAACGTCTTATATTAGGTTACGGAG 57.137 34.615 6.46 0.00 33.44 4.63
3843 5555 9.813446 CCCTCTGTAACTTAATATAAGACGTTT 57.187 33.333 4.24 0.00 0.00 3.60
3844 5556 9.193806 TCCCTCTGTAACTTAATATAAGACGTT 57.806 33.333 4.24 0.00 0.00 3.99
3845 5557 8.757982 TCCCTCTGTAACTTAATATAAGACGT 57.242 34.615 4.24 0.00 0.00 4.34
3846 5558 8.848182 ACTCCCTCTGTAACTTAATATAAGACG 58.152 37.037 4.24 0.00 0.00 4.18
3855 5567 9.575868 CTCATATCTACTCCCTCTGTAACTTAA 57.424 37.037 0.00 0.00 0.00 1.85
3856 5568 8.946248 TCTCATATCTACTCCCTCTGTAACTTA 58.054 37.037 0.00 0.00 0.00 2.24
3857 5569 7.817440 TCTCATATCTACTCCCTCTGTAACTT 58.183 38.462 0.00 0.00 0.00 2.66
3858 5570 7.073215 ACTCTCATATCTACTCCCTCTGTAACT 59.927 40.741 0.00 0.00 0.00 2.24
3859 5571 7.228590 ACTCTCATATCTACTCCCTCTGTAAC 58.771 42.308 0.00 0.00 0.00 2.50
3860 5572 7.395525 ACTCTCATATCTACTCCCTCTGTAA 57.604 40.000 0.00 0.00 0.00 2.41
3861 5573 7.395525 AACTCTCATATCTACTCCCTCTGTA 57.604 40.000 0.00 0.00 0.00 2.74
3862 5574 5.922960 ACTCTCATATCTACTCCCTCTGT 57.077 43.478 0.00 0.00 0.00 3.41
3863 5575 8.328758 AGATAACTCTCATATCTACTCCCTCTG 58.671 40.741 0.00 0.00 38.13 3.35
3864 5576 8.463055 AGATAACTCTCATATCTACTCCCTCT 57.537 38.462 0.00 0.00 38.13 3.69
3910 5622 3.815809 AGTTCCTCATCTCTAGGACTCG 58.184 50.000 0.00 0.00 42.89 4.18
3958 5672 2.032178 CCTATTAGTTGCTTGCTTCGCC 59.968 50.000 0.00 0.00 0.00 5.54
3959 5673 2.032178 CCCTATTAGTTGCTTGCTTCGC 59.968 50.000 0.00 0.00 0.00 4.70
3960 5674 2.614057 CCCCTATTAGTTGCTTGCTTCG 59.386 50.000 0.00 0.00 0.00 3.79
3961 5675 2.952310 CCCCCTATTAGTTGCTTGCTTC 59.048 50.000 0.00 0.00 0.00 3.86
3962 5676 2.311841 ACCCCCTATTAGTTGCTTGCTT 59.688 45.455 0.00 0.00 0.00 3.91
3963 5677 1.923148 ACCCCCTATTAGTTGCTTGCT 59.077 47.619 0.00 0.00 0.00 3.91
3964 5678 2.024414 CACCCCCTATTAGTTGCTTGC 58.976 52.381 0.00 0.00 0.00 4.01
3965 5679 3.279434 GACACCCCCTATTAGTTGCTTG 58.721 50.000 0.00 0.00 0.00 4.01
3966 5680 2.093128 CGACACCCCCTATTAGTTGCTT 60.093 50.000 0.00 0.00 0.00 3.91
3967 5681 1.485066 CGACACCCCCTATTAGTTGCT 59.515 52.381 0.00 0.00 0.00 3.91
3968 5682 1.483415 TCGACACCCCCTATTAGTTGC 59.517 52.381 0.00 0.00 0.00 4.17
3969 5683 3.793559 CTTCGACACCCCCTATTAGTTG 58.206 50.000 0.00 0.00 0.00 3.16
3970 5684 2.169978 GCTTCGACACCCCCTATTAGTT 59.830 50.000 0.00 0.00 0.00 2.24
3971 5685 1.761198 GCTTCGACACCCCCTATTAGT 59.239 52.381 0.00 0.00 0.00 2.24
3972 5686 1.760613 TGCTTCGACACCCCCTATTAG 59.239 52.381 0.00 0.00 0.00 1.73
3973 5687 1.868713 TGCTTCGACACCCCCTATTA 58.131 50.000 0.00 0.00 0.00 0.98
3974 5688 0.988832 TTGCTTCGACACCCCCTATT 59.011 50.000 0.00 0.00 0.00 1.73
3975 5689 0.541863 CTTGCTTCGACACCCCCTAT 59.458 55.000 0.00 0.00 0.00 2.57
3976 5690 1.980052 CTTGCTTCGACACCCCCTA 59.020 57.895 0.00 0.00 0.00 3.53
3977 5691 2.750350 CTTGCTTCGACACCCCCT 59.250 61.111 0.00 0.00 0.00 4.79
3978 5692 3.056328 GCTTGCTTCGACACCCCC 61.056 66.667 0.00 0.00 0.00 5.40
3979 5693 1.856265 CTTGCTTGCTTCGACACCCC 61.856 60.000 0.00 0.00 0.00 4.95
3980 5694 1.166531 ACTTGCTTGCTTCGACACCC 61.167 55.000 0.00 0.00 0.00 4.61
3981 5695 1.508632 TACTTGCTTGCTTCGACACC 58.491 50.000 0.00 0.00 0.00 4.16
3982 5696 2.544267 AGTTACTTGCTTGCTTCGACAC 59.456 45.455 0.00 0.00 0.00 3.67
4018 5849 1.888512 GAGAGGGCACAGCAAAATGAA 59.111 47.619 0.00 0.00 0.00 2.57
4028 5859 2.504367 GCTTAAACAAGAGAGGGCACA 58.496 47.619 0.00 0.00 0.00 4.57
4049 5880 0.102120 CTCGTGAGGATGAGGCTGAC 59.898 60.000 0.00 0.00 32.24 3.51
4053 5884 2.961526 TTAACTCGTGAGGATGAGGC 57.038 50.000 1.43 0.00 39.29 4.70
4069 5900 9.131791 GAAATTGAGTTTATAGGGCAGGATTAA 57.868 33.333 0.00 0.00 0.00 1.40
4199 6031 2.267045 GGCTTTTGGCGATGTCCTT 58.733 52.632 0.00 0.00 42.94 3.36
4225 6057 8.616076 CATCACAGGTCTGTTTATCTTAAATCC 58.384 37.037 0.20 0.00 42.83 3.01
4228 6060 7.094805 GCACATCACAGGTCTGTTTATCTTAAA 60.095 37.037 0.20 0.00 42.83 1.52
4296 6129 6.739112 AGCAAAAATTCAGTAACTGGAGAAC 58.261 36.000 0.00 0.00 31.51 3.01
4304 6137 6.695713 AGTTTTCGGAGCAAAAATTCAGTAAC 59.304 34.615 0.00 0.00 0.00 2.50
4308 6141 5.043248 ACAGTTTTCGGAGCAAAAATTCAG 58.957 37.500 0.00 0.00 0.00 3.02
4327 6160 3.323691 TGCCATCAAGTGTACACTACAGT 59.676 43.478 28.13 10.53 43.85 3.55
4329 6162 4.062293 GTTGCCATCAAGTGTACACTACA 58.938 43.478 28.13 17.70 41.58 2.74
4388 6221 4.590850 ACCTGCAAGAACAAAATCCTTC 57.409 40.909 0.00 0.00 34.07 3.46
4518 6351 4.030913 CAGGGACTTCTCCATGGTAGTTA 58.969 47.826 12.58 0.00 43.55 2.24
4636 6469 4.403734 GAAATTGGGAGTGGGACAGTTAA 58.596 43.478 0.00 0.00 45.14 2.01
4646 6480 4.048504 GTGGAAAAACGAAATTGGGAGTG 58.951 43.478 0.00 0.00 0.00 3.51
4673 6507 5.540337 TGACTGTACTCACTTCATCTCCTTT 59.460 40.000 0.00 0.00 0.00 3.11
4678 6512 6.997655 TCAAATGACTGTACTCACTTCATCT 58.002 36.000 0.00 0.00 31.00 2.90
4683 6517 6.533730 TCCAATCAAATGACTGTACTCACTT 58.466 36.000 0.00 0.00 0.00 3.16
4694 6528 8.498358 GGTCTTGAAAATTTCCAATCAAATGAC 58.502 33.333 3.00 11.00 31.94 3.06
4719 6553 1.278985 TCAGGCCAGTGACTAACATGG 59.721 52.381 5.01 0.00 35.84 3.66
4834 6668 8.402472 CGAAATTCACCTATACAAAATTAGGCA 58.598 33.333 0.00 0.00 38.88 4.75
4852 6686 9.214957 AGTGAACATAACTTATGACGAAATTCA 57.785 29.630 14.58 9.85 39.45 2.57
4888 6722 5.510179 CCTGAATCAAATTTTGTGCCTCACT 60.510 40.000 8.89 0.00 35.11 3.41
4890 6724 4.262549 CCCTGAATCAAATTTTGTGCCTCA 60.263 41.667 8.89 6.92 0.00 3.86
4891 6725 4.248058 CCCTGAATCAAATTTTGTGCCTC 58.752 43.478 8.89 3.27 0.00 4.70
4892 6726 3.557686 GCCCTGAATCAAATTTTGTGCCT 60.558 43.478 8.89 0.00 0.00 4.75
4893 6727 2.743664 GCCCTGAATCAAATTTTGTGCC 59.256 45.455 8.89 1.02 0.00 5.01
4895 6729 3.911868 TCGCCCTGAATCAAATTTTGTG 58.088 40.909 8.89 0.00 0.00 3.33
4910 6750 3.350219 ACATAGAAATGTGTTCGCCCT 57.650 42.857 0.00 0.00 44.79 5.19
4935 6780 9.874205 GTTTGTATACTACCACCATACTTTACA 57.126 33.333 4.17 0.00 0.00 2.41
4938 6783 7.551617 GCAGTTTGTATACTACCACCATACTTT 59.448 37.037 4.17 0.00 0.00 2.66
4939 6784 7.046033 GCAGTTTGTATACTACCACCATACTT 58.954 38.462 4.17 0.00 0.00 2.24
4940 6785 6.383147 AGCAGTTTGTATACTACCACCATACT 59.617 38.462 4.17 0.00 0.00 2.12
4987 6940 7.973944 ACATTCTTATCGCAAAAAGAAATACCC 59.026 33.333 8.03 0.00 43.05 3.69
5044 7003 4.428294 AGCAGCCTGATCAAGCTATAAA 57.572 40.909 18.29 0.00 37.18 1.40
5057 7016 3.068307 ACGGAGTAGTTATTAGCAGCCTG 59.932 47.826 0.00 0.00 41.94 4.85
5124 7389 6.238484 GCTAGAAACGGTCAGCATAATTCAAT 60.238 38.462 0.00 0.00 33.27 2.57
5159 7424 7.210873 ACTTGTTTAGGTTCTCAACTCTACAG 58.789 38.462 0.00 0.00 0.00 2.74
5201 7466 2.099756 GCAGACTAATGTTGGGCAATCC 59.900 50.000 0.00 0.00 0.00 3.01
5305 7570 8.480501 ACAGCAGAAATTAAAGGAATATGCAAT 58.519 29.630 0.00 0.00 35.55 3.56
5417 7682 4.849310 TTGGCTCCCATACGCGCC 62.849 66.667 5.73 0.00 42.78 6.53
5450 7715 5.465390 TGTCTATGTGTCTGTTACAGCAAAC 59.535 40.000 7.61 6.27 39.29 2.93
5472 7744 2.092968 TCAAGGTGCTGACAGAAAGTGT 60.093 45.455 6.65 0.00 44.49 3.55
5475 7747 3.188048 GTGATCAAGGTGCTGACAGAAAG 59.812 47.826 6.65 0.00 0.00 2.62
5480 7752 0.392706 ACGTGATCAAGGTGCTGACA 59.607 50.000 13.36 0.00 0.00 3.58
5481 7753 2.363788 TACGTGATCAAGGTGCTGAC 57.636 50.000 13.36 0.00 0.00 3.51
5483 7755 2.223112 GCAATACGTGATCAAGGTGCTG 60.223 50.000 19.44 13.07 0.00 4.41
5484 7756 2.009774 GCAATACGTGATCAAGGTGCT 58.990 47.619 19.44 2.05 0.00 4.40
5485 7757 1.737236 TGCAATACGTGATCAAGGTGC 59.263 47.619 19.72 19.72 0.00 5.01
5486 7758 3.002791 AGTGCAATACGTGATCAAGGTG 58.997 45.455 13.36 8.80 0.00 4.00
5487 7759 3.002791 CAGTGCAATACGTGATCAAGGT 58.997 45.455 13.36 9.44 0.00 3.50
5488 7760 2.223112 GCAGTGCAATACGTGATCAAGG 60.223 50.000 11.09 3.62 0.00 3.61
5489 7761 2.416202 TGCAGTGCAATACGTGATCAAG 59.584 45.455 17.26 7.13 34.76 3.02
5491 7763 2.091852 TGCAGTGCAATACGTGATCA 57.908 45.000 17.26 0.00 34.76 2.92
5537 7809 9.674068 TGCAACTTGTATTCATATGTAAGGTAA 57.326 29.630 1.90 0.00 0.00 2.85
5538 7810 9.845740 ATGCAACTTGTATTCATATGTAAGGTA 57.154 29.630 1.90 0.00 0.00 3.08
5574 7852 9.029368 CATCATTAGTATCTCTTATCCAGGTCA 57.971 37.037 0.00 0.00 0.00 4.02
5575 7853 9.030452 ACATCATTAGTATCTCTTATCCAGGTC 57.970 37.037 0.00 0.00 0.00 3.85
5576 7854 8.964533 ACATCATTAGTATCTCTTATCCAGGT 57.035 34.615 0.00 0.00 0.00 4.00
5612 7924 8.749026 AGAATTGCAAATCATGATTAGACTCT 57.251 30.769 21.00 14.25 0.00 3.24
5634 7946 6.859112 ACTACTGCCATCTCTTTTCTAGAA 57.141 37.500 0.00 0.00 30.91 2.10
5654 7967 8.375493 ACATACCAATCAGAAGTTCCTAACTA 57.625 34.615 0.00 0.00 41.91 2.24
5689 8005 7.840716 TCCCATCATCTCATTTCTAAACCAAAT 59.159 33.333 0.00 0.00 0.00 2.32
5690 8006 7.181361 TCCCATCATCTCATTTCTAAACCAAA 58.819 34.615 0.00 0.00 0.00 3.28
5691 8007 6.730447 TCCCATCATCTCATTTCTAAACCAA 58.270 36.000 0.00 0.00 0.00 3.67
5692 8008 6.158520 TCTCCCATCATCTCATTTCTAAACCA 59.841 38.462 0.00 0.00 0.00 3.67
5693 8009 6.595682 TCTCCCATCATCTCATTTCTAAACC 58.404 40.000 0.00 0.00 0.00 3.27
5694 8010 7.935755 TCATCTCCCATCATCTCATTTCTAAAC 59.064 37.037 0.00 0.00 0.00 2.01
5744 8085 3.755378 GTCCACAAATCTGTCAGATTGCT 59.245 43.478 25.30 10.77 43.67 3.91
5922 8282 2.480419 CTCGTTTTTCTTCATGGCGTCT 59.520 45.455 0.00 0.00 0.00 4.18
5925 8285 2.726066 GCTCTCGTTTTTCTTCATGGCG 60.726 50.000 0.00 0.00 0.00 5.69
5988 8348 3.219281 GGTGCTTGGGTTTTGAGAGTTA 58.781 45.455 0.00 0.00 0.00 2.24
6138 8531 1.663702 CGACGACCGCTTTCTGGTT 60.664 57.895 0.00 0.00 40.63 3.67
6192 8585 2.976356 GGCGGGTTCTTAGACGGT 59.024 61.111 0.00 0.00 0.00 4.83
6349 8742 1.071542 TCTGAATCCAACCACGCTCAA 59.928 47.619 0.00 0.00 0.00 3.02
6383 8776 3.982372 TAAGCCTGCGCCGACTTCG 62.982 63.158 4.18 0.00 39.44 3.79
6401 8794 0.968901 TCAGGAGCGATTACCGTGGT 60.969 55.000 0.00 0.00 41.15 4.16
6402 8795 0.249073 CTCAGGAGCGATTACCGTGG 60.249 60.000 0.00 0.00 41.15 4.94
6405 8798 4.442375 AATATCTCAGGAGCGATTACCG 57.558 45.455 0.00 0.00 42.21 4.02
6407 8800 6.533367 GGATCAAATATCTCAGGAGCGATTAC 59.467 42.308 0.00 0.00 0.00 1.89
6595 8991 0.167470 CAAGACAATGCTCCACGCTG 59.833 55.000 0.00 0.00 40.11 5.18
6598 8994 1.503542 GGCAAGACAATGCTCCACG 59.496 57.895 0.00 0.00 45.68 4.94
6630 9026 3.976793 ACAAAGATGTGCAGTGACAAG 57.023 42.857 0.00 0.00 38.69 3.16
6635 9031 4.751600 TGAGAGTAACAAAGATGTGCAGTG 59.248 41.667 0.00 0.00 40.46 3.66
6639 9035 4.377841 GCTGTGAGAGTAACAAAGATGTGC 60.378 45.833 0.00 0.00 40.46 4.57
6653 9049 1.741732 CGATTTCAGGGGCTGTGAGAG 60.742 57.143 0.00 0.00 32.61 3.20
6658 9103 2.044946 GGCGATTTCAGGGGCTGT 60.045 61.111 0.00 0.00 32.61 4.40
6659 9104 2.045045 TGGCGATTTCAGGGGCTG 60.045 61.111 0.00 0.00 0.00 4.85
6662 9107 0.243636 GTTTGTGGCGATTTCAGGGG 59.756 55.000 0.00 0.00 0.00 4.79
6666 9111 1.686355 ACTGGTTTGTGGCGATTTCA 58.314 45.000 0.00 0.00 0.00 2.69
6670 9115 0.676782 GCCTACTGGTTTGTGGCGAT 60.677 55.000 0.00 0.00 33.96 4.58
6674 9119 1.234615 CGGTGCCTACTGGTTTGTGG 61.235 60.000 0.00 0.00 35.27 4.17
6685 9130 1.063492 TCTACAATCCTCCGGTGCCTA 60.063 52.381 0.00 0.00 0.00 3.93
6688 9133 1.207329 ACTTCTACAATCCTCCGGTGC 59.793 52.381 0.00 0.00 0.00 5.01
6689 9134 3.611766 AACTTCTACAATCCTCCGGTG 57.388 47.619 0.00 0.00 0.00 4.94
6691 9136 4.184629 CAGAAACTTCTACAATCCTCCGG 58.815 47.826 0.00 0.00 35.34 5.14
6702 9160 2.803956 TCCGCTCTCCAGAAACTTCTA 58.196 47.619 0.00 0.00 35.34 2.10
6728 9186 2.884639 CCTTTCGCTCTTTCCTTTGGAA 59.115 45.455 0.00 0.00 40.27 3.53
6735 9193 2.293399 TGCTTTTCCTTTCGCTCTTTCC 59.707 45.455 0.00 0.00 0.00 3.13
6736 9194 3.243068 TGTGCTTTTCCTTTCGCTCTTTC 60.243 43.478 0.00 0.00 0.00 2.62
6737 9195 2.687935 TGTGCTTTTCCTTTCGCTCTTT 59.312 40.909 0.00 0.00 0.00 2.52
6740 9198 1.873591 TCTGTGCTTTTCCTTTCGCTC 59.126 47.619 0.00 0.00 0.00 5.03
6743 9201 2.322371 GCTCTGTGCTTTTCCTTTCG 57.678 50.000 0.00 0.00 38.95 3.46
6767 9225 8.770322 AGCGGATAGGAGTAGAGATAGTATTTA 58.230 37.037 0.00 0.00 0.00 1.40
6770 9228 6.183361 GGAGCGGATAGGAGTAGAGATAGTAT 60.183 46.154 0.00 0.00 0.00 2.12
6771 9229 5.129155 GGAGCGGATAGGAGTAGAGATAGTA 59.871 48.000 0.00 0.00 0.00 1.82
6772 9230 4.080751 GGAGCGGATAGGAGTAGAGATAGT 60.081 50.000 0.00 0.00 0.00 2.12
6775 9233 2.645297 TGGAGCGGATAGGAGTAGAGAT 59.355 50.000 0.00 0.00 0.00 2.75
6777 9235 2.039216 TCTGGAGCGGATAGGAGTAGAG 59.961 54.545 0.00 0.00 0.00 2.43
6778 9236 2.055579 TCTGGAGCGGATAGGAGTAGA 58.944 52.381 0.00 0.00 0.00 2.59
6779 9237 2.570415 TCTGGAGCGGATAGGAGTAG 57.430 55.000 0.00 0.00 0.00 2.57
6780 9238 2.865079 CTTCTGGAGCGGATAGGAGTA 58.135 52.381 0.00 0.00 0.00 2.59
6781 9239 1.698506 CTTCTGGAGCGGATAGGAGT 58.301 55.000 0.00 0.00 0.00 3.85
6915 9377 2.339556 CCCAAGCCGGCGAAAATCA 61.340 57.895 23.20 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.