Multiple sequence alignment - TraesCS3B01G131100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G131100 chr3B 100.000 5782 0 0 1 5782 113482521 113488302 0.000000e+00 10678.0
1 TraesCS3B01G131100 chr3B 94.641 3340 103 23 1478 4761 495276399 495273080 0.000000e+00 5107.0
2 TraesCS3B01G131100 chr3B 93.742 831 38 9 650 1471 112948725 112947900 0.000000e+00 1234.0
3 TraesCS3B01G131100 chr3B 92.317 833 43 12 650 1471 112497481 112496659 0.000000e+00 1164.0
4 TraesCS3B01G131100 chr3B 91.469 844 51 11 636 1471 113299605 113298775 0.000000e+00 1140.0
5 TraesCS3B01G131100 chr3B 90.689 827 47 20 661 1471 112465961 112465149 0.000000e+00 1074.0
6 TraesCS3B01G131100 chr3B 85.147 781 94 16 700 1471 113304445 113303678 0.000000e+00 780.0
7 TraesCS3B01G131100 chr3B 87.240 337 22 11 4762 5086 112835555 112835228 1.180000e-96 364.0
8 TraesCS3B01G131100 chr3B 86.350 337 25 11 4762 5086 113298781 113298454 1.190000e-91 348.0
9 TraesCS3B01G131100 chr3B 83.386 319 18 20 4779 5086 112947894 112947600 4.440000e-66 263.0
10 TraesCS3B01G131100 chr3B 90.123 162 12 4 5111 5269 112835148 112834988 2.110000e-49 207.0
11 TraesCS3B01G131100 chr3B 82.625 259 21 14 4779 5035 113504214 113504450 2.110000e-49 207.0
12 TraesCS3B01G131100 chr3B 92.806 139 7 2 5133 5269 113298249 113298112 1.270000e-46 198.0
13 TraesCS3B01G131100 chr3B 91.489 47 4 0 4779 4825 112496653 112496607 1.340000e-06 65.8
14 TraesCS3B01G131100 chr3A 100.000 3284 0 0 1478 4761 660278135 660274852 0.000000e+00 6065.0
15 TraesCS3B01G131100 chr3A 92.972 811 47 7 669 1471 80412785 80413593 0.000000e+00 1173.0
16 TraesCS3B01G131100 chr3A 84.006 719 52 21 5111 5780 80409952 80409248 2.940000e-177 632.0
17 TraesCS3B01G131100 chr3A 88.068 528 47 8 5268 5780 80411383 80410857 3.830000e-171 612.0
18 TraesCS3B01G131100 chr3A 90.076 262 14 3 4829 5086 80410286 80410033 4.320000e-86 329.0
19 TraesCS3B01G131100 chr3A 79.775 356 66 6 228 579 520446950 520446597 2.670000e-63 254.0
20 TraesCS3B01G131100 chr3A 80.597 335 28 19 4762 5086 80288984 80288677 2.100000e-54 224.0
21 TraesCS3B01G131100 chr3A 86.525 141 13 6 5111 5247 80288597 80288459 3.610000e-32 150.0
22 TraesCS3B01G131100 chr3A 80.455 220 24 7 4779 4979 80413599 80413818 3.610000e-32 150.0
23 TraesCS3B01G131100 chr4B 98.851 3308 12 2 1474 4763 608780092 608783391 0.000000e+00 5875.0
24 TraesCS3B01G131100 chr1A 98.513 3295 21 3 1476 4761 48035909 48032634 0.000000e+00 5788.0
25 TraesCS3B01G131100 chr6B 98.214 3304 24 4 1476 4761 172766132 172762846 0.000000e+00 5742.0
26 TraesCS3B01G131100 chr7A 96.127 2866 105 4 1901 4761 53283368 53280504 0.000000e+00 4673.0
27 TraesCS3B01G131100 chr5B 95.950 2864 111 3 1901 4760 661523068 661520206 0.000000e+00 4641.0
28 TraesCS3B01G131100 chr5A 93.741 2860 137 15 1905 4762 693355748 693358567 0.000000e+00 4252.0
29 TraesCS3B01G131100 chr1D 94.853 2720 93 16 2069 4760 381023208 381025908 0.000000e+00 4204.0
30 TraesCS3B01G131100 chr3D 93.034 847 45 8 629 1471 68430205 68431041 0.000000e+00 1225.0
31 TraesCS3B01G131100 chr3D 93.350 812 45 7 666 1471 68336124 68335316 0.000000e+00 1192.0
32 TraesCS3B01G131100 chr3D 90.141 852 39 18 629 1471 68388831 68389646 0.000000e+00 1066.0
33 TraesCS3B01G131100 chr3D 87.676 852 60 24 630 1471 68832928 68833744 0.000000e+00 950.0
34 TraesCS3B01G131100 chr3D 87.358 617 48 14 5158 5751 68335018 68334409 0.000000e+00 680.0
35 TraesCS3B01G131100 chr3D 88.425 527 41 8 5268 5780 68469935 68469415 8.230000e-173 617.0
36 TraesCS3B01G131100 chr3D 90.578 329 14 9 4762 5086 68431035 68431350 2.490000e-113 420.0
37 TraesCS3B01G131100 chr3D 81.391 532 47 26 4762 5266 68389640 68390146 2.530000e-103 387.0
38 TraesCS3B01G131100 chr3D 91.403 221 17 2 1 221 568042382 568042164 9.420000e-78 302.0
39 TraesCS3B01G131100 chr3D 91.403 221 18 1 1 221 573446580 573446799 9.420000e-78 302.0
40 TraesCS3B01G131100 chr3D 94.444 198 6 1 5150 5342 68329373 68329176 3.390000e-77 300.0
41 TraesCS3B01G131100 chr3D 86.900 229 22 5 5338 5560 68329007 68328781 3.460000e-62 250.0
42 TraesCS3B01G131100 chr3D 92.593 162 4 4 4925 5086 68335229 68335076 5.830000e-55 226.0
43 TraesCS3B01G131100 chr3D 89.937 159 12 4 5111 5266 68431431 68431588 9.820000e-48 202.0
44 TraesCS3B01G131100 chr3D 87.857 140 12 5 5111 5247 68324776 68324639 6.000000e-35 159.0
45 TraesCS3B01G131100 chr3D 97.753 89 2 0 4762 4850 68335322 68335234 2.790000e-33 154.0
46 TraesCS3B01G131100 chr3D 97.297 37 1 0 5230 5266 68834197 68834233 4.840000e-06 63.9
47 TraesCS3B01G131100 chr4D 90.052 382 33 2 1905 2283 503353599 503353978 1.870000e-134 490.0
48 TraesCS3B01G131100 chr4D 83.529 340 22 19 4762 5086 134563762 134564082 2.640000e-73 287.0
49 TraesCS3B01G131100 chr4D 86.047 172 9 8 4915 5086 134549790 134549634 2.770000e-38 171.0
50 TraesCS3B01G131100 chr4D 82.243 107 10 7 4762 4861 134549895 134549791 3.710000e-12 84.2
51 TraesCS3B01G131100 chr7B 82.908 509 49 21 1478 1973 27596634 27596151 1.930000e-114 424.0
52 TraesCS3B01G131100 chr7B 91.556 225 17 2 1 224 468160601 468160824 5.630000e-80 309.0
53 TraesCS3B01G131100 chr7B 91.403 221 17 2 2 221 468158145 468158364 9.420000e-78 302.0
54 TraesCS3B01G131100 chr7B 95.833 168 6 1 1478 1644 720720537 720720704 2.660000e-68 270.0
55 TraesCS3B01G131100 chr2B 94.811 212 11 0 4553 4764 18163587 18163376 1.200000e-86 331.0
56 TraesCS3B01G131100 chr1B 91.213 239 15 3 1905 2140 447168969 447168734 2.600000e-83 320.0
57 TraesCS3B01G131100 chr6A 91.556 225 17 2 1 224 457311200 457310977 5.630000e-80 309.0
58 TraesCS3B01G131100 chr6A 91.403 221 18 1 1 221 457313363 457313144 9.420000e-78 302.0
59 TraesCS3B01G131100 chr5D 91.781 219 17 1 1 219 483092719 483092502 2.620000e-78 303.0
60 TraesCS3B01G131100 chr7D 90.476 231 19 3 1 231 163602759 163602532 9.420000e-78 302.0
61 TraesCS3B01G131100 chr7D 88.571 175 16 3 1474 1644 439324294 439324468 5.870000e-50 209.0
62 TraesCS3B01G131100 chr2D 91.441 222 16 3 1 221 476761801 476761582 9.420000e-78 302.0
63 TraesCS3B01G131100 chrUn 84.483 232 24 5 1905 2133 76133539 76133317 9.750000e-53 219.0
64 TraesCS3B01G131100 chrUn 89.873 158 12 3 1491 1644 76134021 76133864 3.530000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G131100 chr3B 113482521 113488302 5781 False 10678.000000 10678 100.000000 1 5782 1 chr3B.!!$F1 5781
1 TraesCS3B01G131100 chr3B 495273080 495276399 3319 True 5107.000000 5107 94.641000 1478 4761 1 chr3B.!!$R3 3283
2 TraesCS3B01G131100 chr3B 112465149 112465961 812 True 1074.000000 1074 90.689000 661 1471 1 chr3B.!!$R1 810
3 TraesCS3B01G131100 chr3B 113303678 113304445 767 True 780.000000 780 85.147000 700 1471 1 chr3B.!!$R2 771
4 TraesCS3B01G131100 chr3B 112947600 112948725 1125 True 748.500000 1234 88.564000 650 5086 2 chr3B.!!$R6 4436
5 TraesCS3B01G131100 chr3B 112496607 112497481 874 True 614.900000 1164 91.903000 650 4825 2 chr3B.!!$R4 4175
6 TraesCS3B01G131100 chr3B 113298112 113299605 1493 True 562.000000 1140 90.208333 636 5269 3 chr3B.!!$R7 4633
7 TraesCS3B01G131100 chr3B 112834988 112835555 567 True 285.500000 364 88.681500 4762 5269 2 chr3B.!!$R5 507
8 TraesCS3B01G131100 chr3A 660274852 660278135 3283 True 6065.000000 6065 100.000000 1478 4761 1 chr3A.!!$R2 3283
9 TraesCS3B01G131100 chr3A 80412785 80413818 1033 False 661.500000 1173 86.713500 669 4979 2 chr3A.!!$F1 4310
10 TraesCS3B01G131100 chr3A 80409248 80411383 2135 True 524.333333 632 87.383333 4829 5780 3 chr3A.!!$R4 951
11 TraesCS3B01G131100 chr4B 608780092 608783391 3299 False 5875.000000 5875 98.851000 1474 4763 1 chr4B.!!$F1 3289
12 TraesCS3B01G131100 chr1A 48032634 48035909 3275 True 5788.000000 5788 98.513000 1476 4761 1 chr1A.!!$R1 3285
13 TraesCS3B01G131100 chr6B 172762846 172766132 3286 True 5742.000000 5742 98.214000 1476 4761 1 chr6B.!!$R1 3285
14 TraesCS3B01G131100 chr7A 53280504 53283368 2864 True 4673.000000 4673 96.127000 1901 4761 1 chr7A.!!$R1 2860
15 TraesCS3B01G131100 chr5B 661520206 661523068 2862 True 4641.000000 4641 95.950000 1901 4760 1 chr5B.!!$R1 2859
16 TraesCS3B01G131100 chr5A 693355748 693358567 2819 False 4252.000000 4252 93.741000 1905 4762 1 chr5A.!!$F1 2857
17 TraesCS3B01G131100 chr1D 381023208 381025908 2700 False 4204.000000 4204 94.853000 2069 4760 1 chr1D.!!$F1 2691
18 TraesCS3B01G131100 chr3D 68388831 68390146 1315 False 726.500000 1066 85.766000 629 5266 2 chr3D.!!$F2 4637
19 TraesCS3B01G131100 chr3D 68469415 68469935 520 True 617.000000 617 88.425000 5268 5780 1 chr3D.!!$R2 512
20 TraesCS3B01G131100 chr3D 68430205 68431588 1383 False 615.666667 1225 91.183000 629 5266 3 chr3D.!!$F3 4637
21 TraesCS3B01G131100 chr3D 68334409 68336124 1715 True 563.000000 1192 92.763500 666 5751 4 chr3D.!!$R5 5085
22 TraesCS3B01G131100 chr3D 68832928 68834233 1305 False 506.950000 950 92.486500 630 5266 2 chr3D.!!$F4 4636
23 TraesCS3B01G131100 chr3D 68328781 68329373 592 True 275.000000 300 90.672000 5150 5560 2 chr3D.!!$R4 410
24 TraesCS3B01G131100 chr7B 468158145 468160824 2679 False 305.500000 309 91.479500 1 224 2 chr7B.!!$F2 223
25 TraesCS3B01G131100 chr6A 457310977 457313363 2386 True 305.500000 309 91.479500 1 224 2 chr6A.!!$R1 223
26 TraesCS3B01G131100 chrUn 76133317 76134021 704 True 209.500000 219 87.178000 1491 2133 2 chrUn.!!$R1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 482 0.039180 ATGATCCGCATGCATGGGAT 59.961 50.0 37.16 34.62 42.66 3.85 F
595 596 0.179045 GGCGCTGAGGGTCAACATAT 60.179 55.0 7.64 0.00 0.00 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 3476 1.949847 CTACAGCTACGCCACTGCCT 61.950 60.0 0.00 0.0 37.42 4.75 R
4786 7028 2.348140 GATTCGACGCGCACACCATC 62.348 60.0 5.73 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.602638 ATGAACGCAGTGAAAGCCGA 60.603 50.000 0.00 0.00 45.00 5.54
55 56 1.293179 CATGTGTCAGCGTCCAGGA 59.707 57.895 0.00 0.00 0.00 3.86
143 144 3.949754 AGTCATATCGGTGAACCTCGTTA 59.050 43.478 0.00 0.00 0.00 3.18
144 145 4.400251 AGTCATATCGGTGAACCTCGTTAA 59.600 41.667 0.00 0.00 0.00 2.01
146 147 4.158209 TCATATCGGTGAACCTCGTTAACA 59.842 41.667 6.39 0.00 28.88 2.41
147 148 2.886862 TCGGTGAACCTCGTTAACAA 57.113 45.000 6.39 0.00 28.88 2.83
149 150 3.529533 TCGGTGAACCTCGTTAACAAAA 58.470 40.909 6.39 0.00 28.88 2.44
150 151 3.309410 TCGGTGAACCTCGTTAACAAAAC 59.691 43.478 6.39 0.00 28.88 2.43
152 153 4.551410 CGGTGAACCTCGTTAACAAAACTC 60.551 45.833 6.39 0.00 28.88 3.01
154 155 3.556775 TGAACCTCGTTAACAAAACTCGG 59.443 43.478 6.39 0.00 0.00 4.63
155 156 3.183793 ACCTCGTTAACAAAACTCGGT 57.816 42.857 6.39 0.00 0.00 4.69
156 157 2.867975 ACCTCGTTAACAAAACTCGGTG 59.132 45.455 6.39 0.00 0.00 4.94
157 158 2.867975 CCTCGTTAACAAAACTCGGTGT 59.132 45.455 6.39 0.00 0.00 4.16
159 160 2.535166 TCGTTAACAAAACTCGGTGTCG 59.465 45.455 6.39 0.00 37.82 4.35
160 161 2.282290 CGTTAACAAAACTCGGTGTCGT 59.718 45.455 6.39 0.00 37.69 4.34
162 163 0.375803 AACAAAACTCGGTGTCGTGC 59.624 50.000 0.00 0.00 37.69 5.34
163 164 0.461339 ACAAAACTCGGTGTCGTGCT 60.461 50.000 0.00 0.00 37.69 4.40
164 165 0.232303 CAAAACTCGGTGTCGTGCTC 59.768 55.000 0.00 0.00 37.69 4.26
165 166 1.213094 AAAACTCGGTGTCGTGCTCG 61.213 55.000 0.81 0.81 37.69 5.03
166 167 2.345880 AAACTCGGTGTCGTGCTCGT 62.346 55.000 8.17 0.00 38.33 4.18
167 168 2.801162 CTCGGTGTCGTGCTCGTG 60.801 66.667 8.17 0.00 38.33 4.35
171 172 1.372997 GGTGTCGTGCTCGTGTGAT 60.373 57.895 8.17 0.00 38.33 3.06
172 173 0.944311 GGTGTCGTGCTCGTGTGATT 60.944 55.000 8.17 0.00 38.33 2.57
173 174 0.859232 GTGTCGTGCTCGTGTGATTT 59.141 50.000 8.17 0.00 38.33 2.17
174 175 0.858583 TGTCGTGCTCGTGTGATTTG 59.141 50.000 8.17 0.00 38.33 2.32
176 177 0.599991 TCGTGCTCGTGTGATTTGCT 60.600 50.000 8.17 0.00 38.33 3.91
177 178 0.179240 CGTGCTCGTGTGATTTGCTC 60.179 55.000 0.00 0.00 0.00 4.26
178 179 0.179240 GTGCTCGTGTGATTTGCTCG 60.179 55.000 0.00 0.00 0.00 5.03
180 181 1.291877 GCTCGTGTGATTTGCTCGGT 61.292 55.000 0.00 0.00 0.00 4.69
181 182 0.716108 CTCGTGTGATTTGCTCGGTC 59.284 55.000 0.00 0.00 0.00 4.79
182 183 0.669318 TCGTGTGATTTGCTCGGTCC 60.669 55.000 0.00 0.00 0.00 4.46
183 184 0.670546 CGTGTGATTTGCTCGGTCCT 60.671 55.000 0.00 0.00 0.00 3.85
184 185 1.079503 GTGTGATTTGCTCGGTCCTC 58.920 55.000 0.00 0.00 0.00 3.71
185 186 0.684535 TGTGATTTGCTCGGTCCTCA 59.315 50.000 0.00 0.00 0.00 3.86
187 188 1.066858 GTGATTTGCTCGGTCCTCAGA 60.067 52.381 0.00 0.00 0.00 3.27
188 189 1.833630 TGATTTGCTCGGTCCTCAGAT 59.166 47.619 0.00 0.00 0.00 2.90
189 190 2.208431 GATTTGCTCGGTCCTCAGATG 58.792 52.381 0.00 0.00 0.00 2.90
190 191 1.266178 TTTGCTCGGTCCTCAGATGA 58.734 50.000 0.00 0.00 0.00 2.92
191 192 1.489481 TTGCTCGGTCCTCAGATGAT 58.511 50.000 0.00 0.00 0.00 2.45
192 193 1.035923 TGCTCGGTCCTCAGATGATC 58.964 55.000 0.00 0.00 0.00 2.92
193 194 0.039617 GCTCGGTCCTCAGATGATCG 60.040 60.000 2.10 2.10 37.69 3.69
195 196 1.265635 CTCGGTCCTCAGATGATCGAC 59.734 57.143 6.94 0.00 40.20 4.20
196 197 0.040870 CGGTCCTCAGATGATCGACG 60.041 60.000 2.33 0.00 38.61 5.12
198 199 1.025812 GTCCTCAGATGATCGACGGT 58.974 55.000 0.00 0.00 0.00 4.83
199 200 2.219458 GTCCTCAGATGATCGACGGTA 58.781 52.381 0.00 0.00 0.00 4.02
200 201 2.814919 GTCCTCAGATGATCGACGGTAT 59.185 50.000 0.00 0.00 0.00 2.73
201 202 2.814336 TCCTCAGATGATCGACGGTATG 59.186 50.000 0.00 0.00 0.00 2.39
202 203 2.590073 CTCAGATGATCGACGGTATGC 58.410 52.381 0.00 0.00 0.00 3.14
204 205 1.270826 CAGATGATCGACGGTATGCCT 59.729 52.381 0.00 0.00 0.00 4.75
205 206 1.542030 AGATGATCGACGGTATGCCTC 59.458 52.381 0.00 0.00 0.00 4.70
206 207 0.241213 ATGATCGACGGTATGCCTCG 59.759 55.000 12.95 12.95 37.03 4.63
207 208 1.081376 GATCGACGGTATGCCTCGG 60.081 63.158 16.94 0.00 36.64 4.63
208 209 1.512996 GATCGACGGTATGCCTCGGA 61.513 60.000 16.94 4.51 36.64 4.55
209 210 0.894184 ATCGACGGTATGCCTCGGAT 60.894 55.000 16.94 6.30 36.64 4.18
210 211 1.105167 TCGACGGTATGCCTCGGATT 61.105 55.000 16.94 0.00 36.64 3.01
211 212 0.249322 CGACGGTATGCCTCGGATTT 60.249 55.000 11.81 0.00 34.26 2.17
215 216 3.660865 ACGGTATGCCTCGGATTTATTC 58.339 45.455 0.00 0.00 0.00 1.75
219 220 5.347907 CGGTATGCCTCGGATTTATTCTAAC 59.652 44.000 0.00 0.00 0.00 2.34
220 221 6.228258 GGTATGCCTCGGATTTATTCTAACA 58.772 40.000 0.00 0.00 0.00 2.41
221 222 6.147328 GGTATGCCTCGGATTTATTCTAACAC 59.853 42.308 0.00 0.00 0.00 3.32
222 223 5.092554 TGCCTCGGATTTATTCTAACACA 57.907 39.130 0.00 0.00 0.00 3.72
223 224 5.680619 TGCCTCGGATTTATTCTAACACAT 58.319 37.500 0.00 0.00 0.00 3.21
225 226 6.929049 TGCCTCGGATTTATTCTAACACATAG 59.071 38.462 0.00 0.00 0.00 2.23
227 228 6.369065 CCTCGGATTTATTCTAACACATAGGC 59.631 42.308 0.00 0.00 32.09 3.93
229 230 5.120208 CGGATTTATTCTAACACATAGGCCG 59.880 44.000 0.00 0.00 32.09 6.13
230 231 5.995897 GGATTTATTCTAACACATAGGCCGT 59.004 40.000 0.00 0.00 32.09 5.68
232 233 5.601583 TTATTCTAACACATAGGCCGTCA 57.398 39.130 0.00 0.00 32.09 4.35
233 234 2.953466 TCTAACACATAGGCCGTCAC 57.047 50.000 0.00 0.00 32.09 3.67
234 235 2.172679 TCTAACACATAGGCCGTCACA 58.827 47.619 0.00 0.00 32.09 3.58
235 236 2.563620 TCTAACACATAGGCCGTCACAA 59.436 45.455 0.00 0.00 32.09 3.33
236 237 1.519408 AACACATAGGCCGTCACAAC 58.481 50.000 0.00 0.00 0.00 3.32
245 246 2.776072 CGTCACAACGGCGGAATC 59.224 61.111 13.24 0.00 45.21 2.52
246 247 2.736682 CGTCACAACGGCGGAATCC 61.737 63.158 13.24 0.00 45.21 3.01
279 280 0.877071 CATCATAAGGATGCCGCCAC 59.123 55.000 0.00 0.00 46.35 5.01
281 282 2.111043 ATAAGGATGCCGCCACCG 59.889 61.111 0.00 0.00 0.00 4.94
282 283 2.742116 ATAAGGATGCCGCCACCGT 61.742 57.895 0.00 0.00 0.00 4.83
283 284 2.660258 ATAAGGATGCCGCCACCGTC 62.660 60.000 0.00 0.00 0.00 4.79
290 291 4.735132 CCGCCACCGTCACGACAT 62.735 66.667 0.00 0.00 0.00 3.06
292 293 2.261671 GCCACCGTCACGACATCT 59.738 61.111 0.00 0.00 0.00 2.90
293 294 1.805945 GCCACCGTCACGACATCTC 60.806 63.158 0.00 0.00 0.00 2.75
294 295 1.153823 CCACCGTCACGACATCTCC 60.154 63.158 0.00 0.00 0.00 3.71
295 296 1.595993 CCACCGTCACGACATCTCCT 61.596 60.000 0.00 0.00 0.00 3.69
297 298 0.322636 ACCGTCACGACATCTCCTCT 60.323 55.000 0.00 0.00 0.00 3.69
298 299 0.811915 CCGTCACGACATCTCCTCTT 59.188 55.000 0.00 0.00 0.00 2.85
299 300 1.468224 CCGTCACGACATCTCCTCTTG 60.468 57.143 0.00 0.00 0.00 3.02
300 301 1.468914 CGTCACGACATCTCCTCTTGA 59.531 52.381 0.00 0.00 0.00 3.02
301 302 2.095212 CGTCACGACATCTCCTCTTGAA 60.095 50.000 0.00 0.00 0.00 2.69
303 304 2.095212 TCACGACATCTCCTCTTGAACG 60.095 50.000 0.00 0.00 0.00 3.95
304 305 2.095212 CACGACATCTCCTCTTGAACGA 60.095 50.000 0.00 0.00 0.00 3.85
305 306 2.557056 ACGACATCTCCTCTTGAACGAA 59.443 45.455 0.00 0.00 0.00 3.85
306 307 2.917971 CGACATCTCCTCTTGAACGAAC 59.082 50.000 0.00 0.00 0.00 3.95
307 308 3.366476 CGACATCTCCTCTTGAACGAACT 60.366 47.826 0.00 0.00 0.00 3.01
309 310 3.257393 CATCTCCTCTTGAACGAACTGG 58.743 50.000 0.00 0.00 0.00 4.00
310 311 2.317040 TCTCCTCTTGAACGAACTGGT 58.683 47.619 0.00 0.00 0.00 4.00
311 312 2.698797 TCTCCTCTTGAACGAACTGGTT 59.301 45.455 0.00 0.00 0.00 3.67
313 314 3.463944 TCCTCTTGAACGAACTGGTTTC 58.536 45.455 0.00 0.00 0.00 2.78
314 315 2.548480 CCTCTTGAACGAACTGGTTTCC 59.452 50.000 0.00 0.00 0.00 3.13
316 317 3.611970 TCTTGAACGAACTGGTTTCCAA 58.388 40.909 0.00 0.00 30.80 3.53
317 318 4.011023 TCTTGAACGAACTGGTTTCCAAA 58.989 39.130 0.00 0.00 30.80 3.28
318 319 4.642885 TCTTGAACGAACTGGTTTCCAAAT 59.357 37.500 0.00 0.00 30.80 2.32
319 320 4.561735 TGAACGAACTGGTTTCCAAATC 57.438 40.909 0.00 0.00 30.80 2.17
320 321 3.316868 TGAACGAACTGGTTTCCAAATCC 59.683 43.478 0.00 0.00 30.80 3.01
321 322 2.938838 ACGAACTGGTTTCCAAATCCA 58.061 42.857 0.00 0.00 30.80 3.41
322 323 3.496331 ACGAACTGGTTTCCAAATCCAT 58.504 40.909 0.00 0.00 30.80 3.41
323 324 3.506067 ACGAACTGGTTTCCAAATCCATC 59.494 43.478 0.00 0.00 30.80 3.51
324 325 3.505680 CGAACTGGTTTCCAAATCCATCA 59.494 43.478 0.00 0.00 30.80 3.07
325 326 4.615912 CGAACTGGTTTCCAAATCCATCAC 60.616 45.833 0.00 0.00 30.80 3.06
327 328 2.164219 CTGGTTTCCAAATCCATCACCG 59.836 50.000 0.00 0.00 30.80 4.94
328 329 2.224892 TGGTTTCCAAATCCATCACCGA 60.225 45.455 0.00 0.00 0.00 4.69
329 330 3.023832 GGTTTCCAAATCCATCACCGAT 58.976 45.455 0.00 0.00 0.00 4.18
331 332 4.642885 GGTTTCCAAATCCATCACCGATTA 59.357 41.667 0.00 0.00 29.78 1.75
332 333 5.301805 GGTTTCCAAATCCATCACCGATTAT 59.698 40.000 0.00 0.00 29.78 1.28
333 334 6.488683 GGTTTCCAAATCCATCACCGATTATA 59.511 38.462 0.00 0.00 29.78 0.98
334 335 7.013846 GGTTTCCAAATCCATCACCGATTATAA 59.986 37.037 0.00 0.00 29.78 0.98
335 336 8.410141 GTTTCCAAATCCATCACCGATTATAAA 58.590 33.333 0.00 0.00 29.78 1.40
338 339 7.444183 TCCAAATCCATCACCGATTATAAAGAC 59.556 37.037 0.00 0.00 29.78 3.01
339 340 7.290842 CAAATCCATCACCGATTATAAAGACG 58.709 38.462 0.00 0.00 29.78 4.18
340 341 5.777850 TCCATCACCGATTATAAAGACGA 57.222 39.130 10.21 0.76 0.00 4.20
341 342 5.526115 TCCATCACCGATTATAAAGACGAC 58.474 41.667 10.21 0.00 0.00 4.34
342 343 4.684703 CCATCACCGATTATAAAGACGACC 59.315 45.833 10.21 0.00 0.00 4.79
343 344 3.956233 TCACCGATTATAAAGACGACCG 58.044 45.455 10.21 0.00 0.00 4.79
344 345 2.470257 CACCGATTATAAAGACGACCGC 59.530 50.000 10.21 0.00 0.00 5.68
346 347 2.288030 CCGATTATAAAGACGACCGCCT 60.288 50.000 10.21 0.00 0.00 5.52
347 348 2.978489 CGATTATAAAGACGACCGCCTC 59.022 50.000 0.00 0.00 0.00 4.70
348 349 3.549423 CGATTATAAAGACGACCGCCTCA 60.549 47.826 0.00 0.00 0.00 3.86
349 350 2.857592 TATAAAGACGACCGCCTCAC 57.142 50.000 0.00 0.00 0.00 3.51
350 351 0.175073 ATAAAGACGACCGCCTCACC 59.825 55.000 0.00 0.00 0.00 4.02
351 352 2.203972 TAAAGACGACCGCCTCACCG 62.204 60.000 0.00 0.00 0.00 4.94
353 354 4.047059 GACGACCGCCTCACCGAA 62.047 66.667 0.00 0.00 0.00 4.30
355 356 3.744719 CGACCGCCTCACCGAAGA 61.745 66.667 0.00 0.00 0.00 2.87
357 358 1.446272 GACCGCCTCACCGAAGAAG 60.446 63.158 0.00 0.00 0.00 2.85
358 359 1.874345 GACCGCCTCACCGAAGAAGA 61.874 60.000 0.00 0.00 0.00 2.87
359 360 1.292223 CCGCCTCACCGAAGAAGAA 59.708 57.895 0.00 0.00 0.00 2.52
360 361 0.108138 CCGCCTCACCGAAGAAGAAT 60.108 55.000 0.00 0.00 0.00 2.40
361 362 1.281899 CGCCTCACCGAAGAAGAATC 58.718 55.000 0.00 0.00 0.00 2.52
362 363 1.657822 GCCTCACCGAAGAAGAATCC 58.342 55.000 0.00 0.00 0.00 3.01
363 364 1.927895 CCTCACCGAAGAAGAATCCG 58.072 55.000 0.00 0.00 0.00 4.18
364 365 1.476891 CCTCACCGAAGAAGAATCCGA 59.523 52.381 0.00 0.00 0.00 4.55
365 366 2.094182 CCTCACCGAAGAAGAATCCGAA 60.094 50.000 0.00 0.00 0.00 4.30
367 368 1.661112 CACCGAAGAAGAATCCGAAGC 59.339 52.381 0.00 0.00 0.00 3.86
369 370 2.028020 ACCGAAGAAGAATCCGAAGCTT 60.028 45.455 0.00 0.00 0.00 3.74
370 371 3.003480 CCGAAGAAGAATCCGAAGCTTT 58.997 45.455 0.00 0.00 0.00 3.51
372 373 4.083271 CCGAAGAAGAATCCGAAGCTTTTT 60.083 41.667 0.00 0.00 0.00 1.94
389 390 2.766970 TTTTATTTAGCATCGCCGCC 57.233 45.000 0.00 0.00 0.00 6.13
390 391 0.584396 TTTATTTAGCATCGCCGCCG 59.416 50.000 0.00 0.00 0.00 6.46
391 392 1.837538 TTATTTAGCATCGCCGCCGC 61.838 55.000 0.00 0.00 0.00 6.53
410 411 2.639286 GCCGCCGAAGCCAATATG 59.361 61.111 0.00 0.00 34.57 1.78
411 412 2.186826 GCCGCCGAAGCCAATATGT 61.187 57.895 0.00 0.00 34.57 2.29
412 413 1.941812 CCGCCGAAGCCAATATGTC 59.058 57.895 0.00 0.00 34.57 3.06
413 414 1.564622 CGCCGAAGCCAATATGTCG 59.435 57.895 0.00 0.00 34.57 4.35
416 417 1.003866 GCCGAAGCCAATATGTCGAAC 60.004 52.381 0.00 0.00 35.54 3.95
417 418 1.257936 CCGAAGCCAATATGTCGAACG 59.742 52.381 0.00 0.00 35.54 3.95
418 419 2.190161 CGAAGCCAATATGTCGAACGA 58.810 47.619 0.00 0.00 35.54 3.85
419 420 2.794910 CGAAGCCAATATGTCGAACGAT 59.205 45.455 0.00 0.00 35.54 3.73
421 422 3.735237 AGCCAATATGTCGAACGATCT 57.265 42.857 0.00 0.00 0.00 2.75
424 425 5.597806 AGCCAATATGTCGAACGATCTAAA 58.402 37.500 0.00 0.00 0.00 1.85
425 426 6.046593 AGCCAATATGTCGAACGATCTAAAA 58.953 36.000 0.00 0.00 0.00 1.52
426 427 6.537301 AGCCAATATGTCGAACGATCTAAAAA 59.463 34.615 0.00 0.00 0.00 1.94
427 428 6.627671 GCCAATATGTCGAACGATCTAAAAAC 59.372 38.462 0.00 0.00 0.00 2.43
428 429 7.123830 CCAATATGTCGAACGATCTAAAAACC 58.876 38.462 0.00 0.00 0.00 3.27
429 430 7.011109 CCAATATGTCGAACGATCTAAAAACCT 59.989 37.037 0.00 0.00 0.00 3.50
431 432 9.590451 AATATGTCGAACGATCTAAAAACCTAA 57.410 29.630 0.00 0.00 0.00 2.69
432 433 6.939551 TGTCGAACGATCTAAAAACCTAAG 57.060 37.500 0.00 0.00 0.00 2.18
434 435 6.925165 TGTCGAACGATCTAAAAACCTAAGTT 59.075 34.615 0.00 0.00 38.03 2.66
435 436 8.081633 TGTCGAACGATCTAAAAACCTAAGTTA 58.918 33.333 0.00 0.00 34.19 2.24
436 437 9.080915 GTCGAACGATCTAAAAACCTAAGTTAT 57.919 33.333 0.00 0.00 34.19 1.89
437 438 9.643693 TCGAACGATCTAAAAACCTAAGTTATT 57.356 29.630 0.00 0.00 34.19 1.40
456 457 9.774071 AAGTTATTAGGGTACTAGAACCTACAA 57.226 33.333 0.00 0.12 39.65 2.41
458 459 9.194972 GTTATTAGGGTACTAGAACCTACAACT 57.805 37.037 0.00 0.00 39.65 3.16
461 462 9.774071 ATTAGGGTACTAGAACCTACAACTAAA 57.226 33.333 0.00 0.00 39.65 1.85
462 463 9.600432 TTAGGGTACTAGAACCTACAACTAAAA 57.400 33.333 0.00 0.00 39.65 1.52
464 465 8.537858 AGGGTACTAGAACCTACAACTAAAATG 58.462 37.037 0.00 0.00 39.65 2.32
465 466 8.534496 GGGTACTAGAACCTACAACTAAAATGA 58.466 37.037 0.00 0.00 39.65 2.57
469 470 7.980099 ACTAGAACCTACAACTAAAATGATCCG 59.020 37.037 0.00 0.00 0.00 4.18
470 471 5.585047 AGAACCTACAACTAAAATGATCCGC 59.415 40.000 0.00 0.00 0.00 5.54
471 472 4.839121 ACCTACAACTAAAATGATCCGCA 58.161 39.130 0.00 0.00 0.00 5.69
473 474 5.296780 ACCTACAACTAAAATGATCCGCATG 59.703 40.000 0.00 0.00 37.28 4.06
474 475 4.032703 ACAACTAAAATGATCCGCATGC 57.967 40.909 7.91 7.91 37.28 4.06
475 476 3.443329 ACAACTAAAATGATCCGCATGCA 59.557 39.130 19.57 0.00 37.28 3.96
476 477 4.098349 ACAACTAAAATGATCCGCATGCAT 59.902 37.500 19.57 4.05 37.28 3.96
477 478 4.233123 ACTAAAATGATCCGCATGCATG 57.767 40.909 22.70 22.70 37.28 4.06
478 479 2.519377 AAAATGATCCGCATGCATGG 57.481 45.000 27.34 16.87 37.28 3.66
479 480 0.677288 AAATGATCCGCATGCATGGG 59.323 50.000 31.05 31.05 37.28 4.00
480 481 0.178984 AATGATCCGCATGCATGGGA 60.179 50.000 37.16 32.29 42.66 4.37
481 482 0.039180 ATGATCCGCATGCATGGGAT 59.961 50.000 37.16 34.62 42.66 3.85
482 483 0.607217 TGATCCGCATGCATGGGATC 60.607 55.000 38.45 38.45 45.18 3.36
483 484 1.303888 ATCCGCATGCATGGGATCC 60.304 57.895 37.16 16.64 42.66 3.36
484 485 3.359523 CCGCATGCATGGGATCCG 61.360 66.667 37.16 25.63 42.66 4.18
485 486 3.359523 CGCATGCATGGGATCCGG 61.360 66.667 33.58 4.96 42.66 5.14
486 487 2.203394 GCATGCATGGGATCCGGT 60.203 61.111 27.34 0.00 0.00 5.28
487 488 2.558286 GCATGCATGGGATCCGGTG 61.558 63.158 27.34 8.13 0.00 4.94
489 490 1.149174 ATGCATGGGATCCGGTGAC 59.851 57.895 16.68 9.64 0.00 3.67
490 491 2.203209 GCATGGGATCCGGTGACC 60.203 66.667 16.68 2.38 0.00 4.02
491 492 2.510906 CATGGGATCCGGTGACCC 59.489 66.667 20.47 20.47 43.51 4.46
503 504 3.608662 TGACCCGTCACCACCGAC 61.609 66.667 0.00 0.00 34.14 4.79
509 510 2.418356 GTCACCACCGACGACCAA 59.582 61.111 0.00 0.00 0.00 3.67
511 512 0.810823 GTCACCACCGACGACCAAAA 60.811 55.000 0.00 0.00 0.00 2.44
512 513 0.531090 TCACCACCGACGACCAAAAG 60.531 55.000 0.00 0.00 0.00 2.27
513 514 1.227734 ACCACCGACGACCAAAAGG 60.228 57.895 0.00 0.00 0.00 3.11
514 515 1.227734 CCACCGACGACCAAAAGGT 60.228 57.895 0.00 0.00 35.24 3.50
522 523 2.079049 GACCAAAAGGTCGCTAGCG 58.921 57.895 30.91 30.91 41.35 4.26
523 524 1.359459 GACCAAAAGGTCGCTAGCGG 61.359 60.000 34.76 19.18 40.25 5.52
524 525 1.079405 CCAAAAGGTCGCTAGCGGA 60.079 57.895 34.76 19.68 40.25 5.54
525 526 1.084370 CCAAAAGGTCGCTAGCGGAG 61.084 60.000 34.76 16.76 40.25 4.63
526 527 1.084370 CAAAAGGTCGCTAGCGGAGG 61.084 60.000 34.76 14.81 40.25 4.30
527 528 2.240162 AAAAGGTCGCTAGCGGAGGG 62.240 60.000 34.76 8.81 40.25 4.30
530 531 3.597728 GTCGCTAGCGGAGGGGAG 61.598 72.222 34.76 6.46 38.64 4.30
531 532 4.124943 TCGCTAGCGGAGGGGAGT 62.125 66.667 34.76 0.00 38.64 3.85
532 533 3.597728 CGCTAGCGGAGGGGAGTC 61.598 72.222 29.29 0.00 34.46 3.36
533 534 3.597728 GCTAGCGGAGGGGAGTCG 61.598 72.222 0.00 0.00 0.00 4.18
540 541 2.184579 GAGGGGAGTCGCCGAAAG 59.815 66.667 19.66 0.00 41.60 2.62
542 543 2.125633 GGGGAGTCGCCGAAAGAC 60.126 66.667 10.92 0.00 37.63 3.01
552 553 3.632700 CGAAAGACGGCACCGAAA 58.367 55.556 17.40 0.00 42.83 3.46
553 554 1.491563 CGAAAGACGGCACCGAAAG 59.508 57.895 17.40 0.00 42.83 2.62
554 555 0.942410 CGAAAGACGGCACCGAAAGA 60.942 55.000 17.40 0.00 42.83 2.52
555 556 0.790814 GAAAGACGGCACCGAAAGAG 59.209 55.000 17.40 0.00 42.83 2.85
556 557 1.228657 AAAGACGGCACCGAAAGAGC 61.229 55.000 17.40 0.00 42.83 4.09
557 558 2.048127 GACGGCACCGAAAGAGCT 60.048 61.111 17.40 0.00 42.83 4.09
558 559 2.357517 ACGGCACCGAAAGAGCTG 60.358 61.111 17.40 0.00 42.83 4.24
559 560 3.121030 CGGCACCGAAAGAGCTGG 61.121 66.667 2.01 0.00 42.83 4.85
560 561 2.032681 GGCACCGAAAGAGCTGGT 59.967 61.111 0.00 0.00 36.10 4.00
561 562 1.600916 GGCACCGAAAGAGCTGGTT 60.601 57.895 0.00 0.00 32.48 3.67
562 563 1.578206 GGCACCGAAAGAGCTGGTTC 61.578 60.000 0.00 0.00 32.48 3.62
563 564 0.603975 GCACCGAAAGAGCTGGTTCT 60.604 55.000 0.00 0.00 32.48 3.01
570 571 1.294780 AGAGCTGGTTCTCTTGGCG 59.705 57.895 0.00 0.00 40.32 5.69
571 572 1.743252 GAGCTGGTTCTCTTGGCGG 60.743 63.158 0.00 0.00 0.00 6.13
572 573 3.435186 GCTGGTTCTCTTGGCGGC 61.435 66.667 0.00 0.00 0.00 6.53
573 574 3.121030 CTGGTTCTCTTGGCGGCG 61.121 66.667 0.51 0.51 0.00 6.46
574 575 4.697756 TGGTTCTCTTGGCGGCGG 62.698 66.667 9.78 0.00 0.00 6.13
592 593 4.680237 CGGCGCTGAGGGTCAACA 62.680 66.667 11.90 0.00 0.00 3.33
594 595 1.220749 GGCGCTGAGGGTCAACATA 59.779 57.895 7.64 0.00 0.00 2.29
595 596 0.179045 GGCGCTGAGGGTCAACATAT 60.179 55.000 7.64 0.00 0.00 1.78
596 597 1.668419 GCGCTGAGGGTCAACATATT 58.332 50.000 0.00 0.00 0.00 1.28
597 598 2.017049 GCGCTGAGGGTCAACATATTT 58.983 47.619 0.00 0.00 0.00 1.40
598 599 2.223340 GCGCTGAGGGTCAACATATTTG 60.223 50.000 0.00 0.00 0.00 2.32
599 600 2.355756 CGCTGAGGGTCAACATATTTGG 59.644 50.000 0.00 0.00 0.00 3.28
600 601 2.099756 GCTGAGGGTCAACATATTTGGC 59.900 50.000 0.00 0.00 0.00 4.52
601 602 3.624777 CTGAGGGTCAACATATTTGGCT 58.375 45.455 0.00 0.00 0.00 4.75
602 603 4.780815 CTGAGGGTCAACATATTTGGCTA 58.219 43.478 0.00 0.00 0.00 3.93
603 604 4.780815 TGAGGGTCAACATATTTGGCTAG 58.219 43.478 0.00 0.00 0.00 3.42
604 605 4.137543 GAGGGTCAACATATTTGGCTAGG 58.862 47.826 0.00 0.00 0.00 3.02
605 606 3.117512 AGGGTCAACATATTTGGCTAGGG 60.118 47.826 0.00 0.00 0.00 3.53
607 608 3.883489 GGTCAACATATTTGGCTAGGGAC 59.117 47.826 0.00 0.00 0.00 4.46
608 609 4.385310 GGTCAACATATTTGGCTAGGGACT 60.385 45.833 0.00 0.00 46.37 3.85
609 610 4.816925 GTCAACATATTTGGCTAGGGACTC 59.183 45.833 0.00 0.00 41.75 3.36
612 613 4.040755 ACATATTTGGCTAGGGACTCACT 58.959 43.478 0.00 0.00 41.75 3.41
613 614 4.101741 ACATATTTGGCTAGGGACTCACTC 59.898 45.833 0.00 0.00 41.75 3.51
614 615 1.276622 TTTGGCTAGGGACTCACTCC 58.723 55.000 0.00 0.00 41.75 3.85
615 616 0.970937 TTGGCTAGGGACTCACTCCG 60.971 60.000 0.00 0.00 40.56 4.63
616 617 1.380112 GGCTAGGGACTCACTCCGT 60.380 63.158 0.00 0.00 40.56 4.69
619 620 2.308690 GCTAGGGACTCACTCCGTATT 58.691 52.381 0.00 0.00 40.56 1.89
620 621 2.034812 GCTAGGGACTCACTCCGTATTG 59.965 54.545 0.00 0.00 40.56 1.90
621 622 0.824759 AGGGACTCACTCCGTATTGC 59.175 55.000 0.00 0.00 40.56 3.56
622 623 0.535335 GGGACTCACTCCGTATTGCA 59.465 55.000 0.00 0.00 40.56 4.08
623 624 1.641577 GGACTCACTCCGTATTGCAC 58.358 55.000 0.00 0.00 0.00 4.57
657 659 1.453155 AGATCTCGGCATGCGTTTTT 58.547 45.000 12.44 0.00 0.00 1.94
658 660 1.398390 AGATCTCGGCATGCGTTTTTC 59.602 47.619 12.44 6.06 0.00 2.29
659 661 0.451783 ATCTCGGCATGCGTTTTTCC 59.548 50.000 12.44 0.00 0.00 3.13
754 1103 3.440415 GCCCAAAGCTACCGCACC 61.440 66.667 0.00 0.00 39.10 5.01
755 1104 3.124921 CCCAAAGCTACCGCACCG 61.125 66.667 0.00 0.00 39.10 4.94
948 1363 5.055812 TCCACAAAATTCAACAAGCAATCC 58.944 37.500 0.00 0.00 0.00 3.01
949 1364 4.815308 CCACAAAATTCAACAAGCAATCCA 59.185 37.500 0.00 0.00 0.00 3.41
950 1365 5.296283 CCACAAAATTCAACAAGCAATCCAA 59.704 36.000 0.00 0.00 0.00 3.53
951 1366 6.193761 CACAAAATTCAACAAGCAATCCAAC 58.806 36.000 0.00 0.00 0.00 3.77
952 1367 5.879223 ACAAAATTCAACAAGCAATCCAACA 59.121 32.000 0.00 0.00 0.00 3.33
953 1368 5.989551 AAATTCAACAAGCAATCCAACAC 57.010 34.783 0.00 0.00 0.00 3.32
954 1369 4.669206 ATTCAACAAGCAATCCAACACA 57.331 36.364 0.00 0.00 0.00 3.72
955 1370 3.713858 TCAACAAGCAATCCAACACAG 57.286 42.857 0.00 0.00 0.00 3.66
956 1371 3.023119 TCAACAAGCAATCCAACACAGT 58.977 40.909 0.00 0.00 0.00 3.55
957 1372 3.066621 TCAACAAGCAATCCAACACAGTC 59.933 43.478 0.00 0.00 0.00 3.51
1078 2792 2.680352 ACATCCCAGACGGCGAGT 60.680 61.111 16.62 0.00 0.00 4.18
1474 3476 4.152248 CCATCCAGGTCCAGTCCA 57.848 61.111 0.00 0.00 0.00 4.02
1711 3871 0.754217 ACCCTAGCGGCTATCGTCAA 60.754 55.000 10.62 0.00 41.72 3.18
1712 3872 0.603569 CCCTAGCGGCTATCGTCAAT 59.396 55.000 10.62 0.00 41.72 2.57
1713 3873 1.000955 CCCTAGCGGCTATCGTCAATT 59.999 52.381 10.62 0.00 41.72 2.32
1714 3874 2.329379 CCTAGCGGCTATCGTCAATTC 58.671 52.381 10.62 0.00 41.72 2.17
1715 3875 1.979469 CTAGCGGCTATCGTCAATTCG 59.021 52.381 10.62 0.00 41.72 3.34
1716 3876 0.102481 AGCGGCTATCGTCAATTCGT 59.898 50.000 0.00 0.00 41.72 3.85
1717 3877 0.503117 GCGGCTATCGTCAATTCGTC 59.497 55.000 0.00 0.00 41.72 4.20
1718 3878 1.835121 CGGCTATCGTCAATTCGTCA 58.165 50.000 0.00 0.00 0.00 4.35
4786 7028 1.227205 GTCGCCTGAGCTGAGATGG 60.227 63.158 0.01 0.00 36.60 3.51
4789 7031 0.600518 CGCCTGAGCTGAGATGGATG 60.601 60.000 0.01 0.00 36.60 3.51
4923 7417 1.675714 CCTGCGCACTGGTGAAGATTA 60.676 52.381 5.66 0.00 0.00 1.75
4955 7457 5.048504 CGTTAATGGAAATGGGGATGATCTG 60.049 44.000 0.00 0.00 0.00 2.90
4962 7464 1.152881 GGGGATGATCTGCGGCTTT 60.153 57.895 0.00 0.00 0.00 3.51
4979 7481 4.568956 GGCTTTGCCTGAATAAAACATGT 58.431 39.130 0.00 0.00 46.69 3.21
4982 7484 5.870978 GCTTTGCCTGAATAAAACATGTGAT 59.129 36.000 0.00 0.00 0.00 3.06
4983 7485 6.369615 GCTTTGCCTGAATAAAACATGTGATT 59.630 34.615 0.00 0.21 0.00 2.57
4984 7486 7.412237 GCTTTGCCTGAATAAAACATGTGATTC 60.412 37.037 16.16 16.16 0.00 2.52
4986 7488 6.623486 TGCCTGAATAAAACATGTGATTCTG 58.377 36.000 20.50 19.49 31.03 3.02
4987 7489 6.209192 TGCCTGAATAAAACATGTGATTCTGT 59.791 34.615 20.50 0.00 31.03 3.41
4988 7490 7.392953 TGCCTGAATAAAACATGTGATTCTGTA 59.607 33.333 20.50 12.88 31.03 2.74
4989 7491 8.408601 GCCTGAATAAAACATGTGATTCTGTAT 58.591 33.333 20.50 2.00 31.03 2.29
5079 7582 5.879237 TCAGAAAGCTGTGTTTGTAACTTG 58.121 37.500 0.00 0.00 42.84 3.16
5086 7589 4.261031 GCTGTGTTTGTAACTTGACGGAAT 60.261 41.667 0.00 0.00 0.00 3.01
5087 7590 5.163302 TGTGTTTGTAACTTGACGGAATG 57.837 39.130 0.00 0.00 0.00 2.67
5088 7591 4.636648 TGTGTTTGTAACTTGACGGAATGT 59.363 37.500 0.00 0.00 0.00 2.71
5139 7805 9.671279 AAAATCCATATTTGTCTTCCATTTTCC 57.329 29.630 0.00 0.00 35.46 3.13
5301 8011 6.495181 TGACTTTTTCCACCCAAAATAGCATA 59.505 34.615 0.00 0.00 0.00 3.14
5318 8028 4.347607 AGCATAAAAGTCATTCCTTGGCT 58.652 39.130 0.00 0.00 43.96 4.75
5358 8241 8.837389 AGACAAATACAACTGAAGGTTAAGTTC 58.163 33.333 0.00 0.00 34.41 3.01
5379 8262 8.122472 AGTTCGTTTCCCAAGAATTTTGATAT 57.878 30.769 3.00 0.00 0.00 1.63
5475 8372 4.692155 GCAGAGGGGAACAAATGAAAATTG 59.308 41.667 0.00 0.00 0.00 2.32
5476 8373 4.692155 CAGAGGGGAACAAATGAAAATTGC 59.308 41.667 0.00 0.00 0.00 3.56
5581 8499 2.612972 CGCTTGTGGTAGTTGAGTGGAT 60.613 50.000 0.00 0.00 0.00 3.41
5586 8504 1.831106 TGGTAGTTGAGTGGATCGCAT 59.169 47.619 0.00 0.00 0.00 4.73
5608 8530 6.639686 GCATCTATTAGTCGGTCGATAACAAA 59.360 38.462 0.00 0.00 0.00 2.83
5609 8531 7.168637 GCATCTATTAGTCGGTCGATAACAAAA 59.831 37.037 0.00 0.00 0.00 2.44
5613 8535 9.632969 CTATTAGTCGGTCGATAACAAAATTTG 57.367 33.333 3.89 3.89 0.00 2.32
5615 8537 5.923665 AGTCGGTCGATAACAAAATTTGTC 58.076 37.500 12.11 0.00 44.59 3.18
5616 8538 5.699458 AGTCGGTCGATAACAAAATTTGTCT 59.301 36.000 12.11 2.83 44.59 3.41
5669 8591 7.171337 ACGCTAAACACGATTAAAAGTAAAGGA 59.829 33.333 0.00 0.00 0.00 3.36
5670 8592 8.173130 CGCTAAACACGATTAAAAGTAAAGGAT 58.827 33.333 0.00 0.00 0.00 3.24
5676 8608 9.893305 ACACGATTAAAAGTAAAGGATGAAAAG 57.107 29.630 0.00 0.00 0.00 2.27
5692 8624 9.699410 AGGATGAAAAGTATAAATGACATGGAA 57.301 29.630 0.00 0.00 0.00 3.53
5704 8637 5.796424 ATGACATGGAATTTTATGCTCCC 57.204 39.130 0.00 0.00 0.00 4.30
5707 8640 5.483231 TGACATGGAATTTTATGCTCCCAAA 59.517 36.000 0.00 0.00 0.00 3.28
5718 8651 1.946768 TGCTCCCAAACTCAAACTTCG 59.053 47.619 0.00 0.00 0.00 3.79
5723 8656 1.336755 CCAAACTCAAACTTCGGGGTG 59.663 52.381 0.00 0.00 0.00 4.61
5729 8662 1.107945 CAAACTTCGGGGTGGTTTGT 58.892 50.000 8.91 0.00 42.46 2.83
5751 8684 2.875296 TCCAAGCTACAATTTGCCACT 58.125 42.857 0.00 0.00 0.00 4.00
5752 8685 2.557924 TCCAAGCTACAATTTGCCACTG 59.442 45.455 0.00 0.00 0.00 3.66
5766 8699 2.741517 TGCCACTGTTTGTCACATATCG 59.258 45.455 0.00 0.00 33.76 2.92
5768 8701 3.181520 GCCACTGTTTGTCACATATCGAC 60.182 47.826 0.00 0.00 33.76 4.20
5774 8707 6.807230 ACTGTTTGTCACATATCGACTTAGAC 59.193 38.462 0.00 0.00 33.76 2.59
5780 8713 7.027760 TGTCACATATCGACTTAGACAAGTTC 58.972 38.462 6.97 0.00 45.18 3.01
5781 8714 7.094334 TGTCACATATCGACTTAGACAAGTTCT 60.094 37.037 6.97 0.00 45.18 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.602638 TCGGCTTTCACTGCGTTCAT 60.603 50.000 0.00 0.00 0.00 2.57
24 25 0.249699 ACACATGTCGTCGGCTTTCA 60.250 50.000 0.00 0.00 0.00 2.69
143 144 0.375803 GCACGACACCGAGTTTTGTT 59.624 50.000 0.00 0.00 39.50 2.83
144 145 0.461339 AGCACGACACCGAGTTTTGT 60.461 50.000 0.00 0.00 39.50 2.83
146 147 1.213094 CGAGCACGACACCGAGTTTT 61.213 55.000 0.00 0.00 42.66 2.43
147 148 1.660575 CGAGCACGACACCGAGTTT 60.661 57.895 0.00 0.00 42.66 2.66
149 150 3.285215 ACGAGCACGACACCGAGT 61.285 61.111 11.40 0.00 42.66 4.18
150 151 2.801162 CACGAGCACGACACCGAG 60.801 66.667 11.40 0.00 42.66 4.63
152 153 3.394874 CACACGAGCACGACACCG 61.395 66.667 11.40 0.00 42.66 4.94
154 155 0.859232 AAATCACACGAGCACGACAC 59.141 50.000 11.40 0.00 42.66 3.67
155 156 0.858583 CAAATCACACGAGCACGACA 59.141 50.000 11.40 0.00 42.66 4.35
156 157 0.451135 GCAAATCACACGAGCACGAC 60.451 55.000 11.40 0.00 42.66 4.34
157 158 0.599991 AGCAAATCACACGAGCACGA 60.600 50.000 11.40 0.00 42.66 4.35
159 160 0.179240 CGAGCAAATCACACGAGCAC 60.179 55.000 0.00 0.00 0.00 4.40
160 161 1.291184 CCGAGCAAATCACACGAGCA 61.291 55.000 0.00 0.00 0.00 4.26
162 163 0.716108 GACCGAGCAAATCACACGAG 59.284 55.000 0.00 0.00 0.00 4.18
163 164 0.669318 GGACCGAGCAAATCACACGA 60.669 55.000 0.00 0.00 0.00 4.35
164 165 0.670546 AGGACCGAGCAAATCACACG 60.671 55.000 0.00 0.00 0.00 4.49
165 166 1.079503 GAGGACCGAGCAAATCACAC 58.920 55.000 0.00 0.00 0.00 3.82
166 167 0.684535 TGAGGACCGAGCAAATCACA 59.315 50.000 0.00 0.00 0.00 3.58
167 168 1.066858 TCTGAGGACCGAGCAAATCAC 60.067 52.381 0.00 0.00 0.00 3.06
171 172 1.266178 TCATCTGAGGACCGAGCAAA 58.734 50.000 0.00 0.00 0.00 3.68
172 173 1.410517 GATCATCTGAGGACCGAGCAA 59.589 52.381 0.00 0.00 0.00 3.91
173 174 1.035923 GATCATCTGAGGACCGAGCA 58.964 55.000 0.00 0.00 0.00 4.26
174 175 0.039617 CGATCATCTGAGGACCGAGC 60.040 60.000 0.00 0.00 0.00 5.03
176 177 1.309950 GTCGATCATCTGAGGACCGA 58.690 55.000 4.42 4.42 0.00 4.69
177 178 0.040870 CGTCGATCATCTGAGGACCG 60.041 60.000 0.00 0.00 31.62 4.79
178 179 0.312416 CCGTCGATCATCTGAGGACC 59.688 60.000 0.00 0.00 31.62 4.46
180 181 2.632987 TACCGTCGATCATCTGAGGA 57.367 50.000 0.00 0.00 0.00 3.71
181 182 2.669670 GCATACCGTCGATCATCTGAGG 60.670 54.545 0.00 0.00 0.00 3.86
182 183 2.590073 GCATACCGTCGATCATCTGAG 58.410 52.381 0.00 0.00 0.00 3.35
183 184 1.269723 GGCATACCGTCGATCATCTGA 59.730 52.381 0.00 0.00 0.00 3.27
184 185 1.270826 AGGCATACCGTCGATCATCTG 59.729 52.381 0.00 0.00 42.76 2.90
185 186 1.542030 GAGGCATACCGTCGATCATCT 59.458 52.381 0.00 0.00 42.76 2.90
187 188 0.241213 CGAGGCATACCGTCGATCAT 59.759 55.000 0.00 0.00 42.76 2.45
188 189 1.652563 CGAGGCATACCGTCGATCA 59.347 57.895 0.00 0.00 42.76 2.92
189 190 1.081376 CCGAGGCATACCGTCGATC 60.081 63.158 6.94 0.00 42.76 3.69
190 191 0.894184 ATCCGAGGCATACCGTCGAT 60.894 55.000 6.94 0.00 42.76 3.59
191 192 1.105167 AATCCGAGGCATACCGTCGA 61.105 55.000 6.94 0.00 42.76 4.20
192 193 0.249322 AAATCCGAGGCATACCGTCG 60.249 55.000 0.00 0.00 42.76 5.12
193 194 2.806608 TAAATCCGAGGCATACCGTC 57.193 50.000 0.00 0.00 42.76 4.79
195 196 3.926616 AGAATAAATCCGAGGCATACCG 58.073 45.455 0.00 0.00 42.76 4.02
196 197 6.147328 GTGTTAGAATAAATCCGAGGCATACC 59.853 42.308 0.00 0.00 0.00 2.73
198 199 6.822442 TGTGTTAGAATAAATCCGAGGCATA 58.178 36.000 0.00 0.00 0.00 3.14
199 200 5.680619 TGTGTTAGAATAAATCCGAGGCAT 58.319 37.500 0.00 0.00 0.00 4.40
200 201 5.092554 TGTGTTAGAATAAATCCGAGGCA 57.907 39.130 0.00 0.00 0.00 4.75
201 202 6.369065 CCTATGTGTTAGAATAAATCCGAGGC 59.631 42.308 0.00 0.00 0.00 4.70
202 203 6.369065 GCCTATGTGTTAGAATAAATCCGAGG 59.631 42.308 0.00 0.00 0.00 4.63
204 205 6.228258 GGCCTATGTGTTAGAATAAATCCGA 58.772 40.000 0.00 0.00 0.00 4.55
205 206 5.120208 CGGCCTATGTGTTAGAATAAATCCG 59.880 44.000 0.00 0.00 0.00 4.18
206 207 5.995897 ACGGCCTATGTGTTAGAATAAATCC 59.004 40.000 0.00 0.00 0.00 3.01
207 208 6.704493 TGACGGCCTATGTGTTAGAATAAATC 59.296 38.462 0.00 0.00 0.00 2.17
208 209 6.482308 GTGACGGCCTATGTGTTAGAATAAAT 59.518 38.462 0.00 0.00 0.00 1.40
209 210 5.813672 GTGACGGCCTATGTGTTAGAATAAA 59.186 40.000 0.00 0.00 0.00 1.40
210 211 5.105269 TGTGACGGCCTATGTGTTAGAATAA 60.105 40.000 0.00 0.00 0.00 1.40
211 212 4.403113 TGTGACGGCCTATGTGTTAGAATA 59.597 41.667 0.00 0.00 0.00 1.75
215 216 2.665649 TGTGACGGCCTATGTGTTAG 57.334 50.000 0.00 0.00 0.00 2.34
219 220 2.078226 CGTTGTGACGGCCTATGTG 58.922 57.895 0.00 0.00 45.32 3.21
220 221 4.590487 CGTTGTGACGGCCTATGT 57.410 55.556 0.00 0.00 45.32 2.29
229 230 2.736682 CGGATTCCGCCGTTGTGAC 61.737 63.158 12.95 0.00 46.07 3.67
230 231 2.433491 CGGATTCCGCCGTTGTGA 60.433 61.111 12.95 0.00 46.07 3.58
238 239 5.242872 GAACTTGTGTTCTCGGATTCCGC 62.243 52.174 20.36 6.85 46.56 5.54
239 240 2.412089 GAACTTGTGTTCTCGGATTCCG 59.588 50.000 19.16 19.16 46.56 4.30
263 264 2.253758 CGGTGGCGGCATCCTTATG 61.254 63.158 17.19 0.00 36.09 1.90
264 265 2.111043 CGGTGGCGGCATCCTTAT 59.889 61.111 17.19 0.00 0.00 1.73
265 266 3.379865 GACGGTGGCGGCATCCTTA 62.380 63.158 17.19 0.00 0.00 2.69
266 267 4.778143 GACGGTGGCGGCATCCTT 62.778 66.667 17.19 12.00 0.00 3.36
273 274 4.735132 ATGTCGTGACGGTGGCGG 62.735 66.667 4.70 0.00 0.00 6.13
274 275 3.179265 GATGTCGTGACGGTGGCG 61.179 66.667 4.70 0.00 0.00 5.69
275 276 1.805945 GAGATGTCGTGACGGTGGC 60.806 63.158 4.70 0.00 0.00 5.01
276 277 1.153823 GGAGATGTCGTGACGGTGG 60.154 63.158 4.70 0.00 0.00 4.61
279 280 0.811915 AAGAGGAGATGTCGTGACGG 59.188 55.000 4.70 0.00 0.00 4.79
281 282 3.246619 GTTCAAGAGGAGATGTCGTGAC 58.753 50.000 0.00 0.00 33.01 3.67
282 283 2.095212 CGTTCAAGAGGAGATGTCGTGA 60.095 50.000 0.00 0.00 31.63 4.35
283 284 2.095212 TCGTTCAAGAGGAGATGTCGTG 60.095 50.000 0.00 0.00 0.00 4.35
285 286 2.917971 GTTCGTTCAAGAGGAGATGTCG 59.082 50.000 0.00 0.00 0.00 4.35
287 288 3.306364 CCAGTTCGTTCAAGAGGAGATGT 60.306 47.826 0.00 0.00 0.00 3.06
288 289 3.257393 CCAGTTCGTTCAAGAGGAGATG 58.743 50.000 0.00 0.00 0.00 2.90
289 290 2.900546 ACCAGTTCGTTCAAGAGGAGAT 59.099 45.455 0.00 0.00 0.00 2.75
290 291 2.317040 ACCAGTTCGTTCAAGAGGAGA 58.683 47.619 0.00 0.00 0.00 3.71
292 293 3.463944 GAAACCAGTTCGTTCAAGAGGA 58.536 45.455 0.00 0.00 0.00 3.71
293 294 2.548480 GGAAACCAGTTCGTTCAAGAGG 59.452 50.000 0.00 0.00 37.08 3.69
294 295 3.202906 TGGAAACCAGTTCGTTCAAGAG 58.797 45.455 0.00 0.00 37.08 2.85
295 296 3.269538 TGGAAACCAGTTCGTTCAAGA 57.730 42.857 0.00 0.00 37.08 3.02
297 298 4.202070 GGATTTGGAAACCAGTTCGTTCAA 60.202 41.667 0.00 0.00 37.08 2.69
298 299 3.316868 GGATTTGGAAACCAGTTCGTTCA 59.683 43.478 0.00 0.00 37.08 3.18
299 300 3.316868 TGGATTTGGAAACCAGTTCGTTC 59.683 43.478 0.00 0.00 37.08 3.95
300 301 3.292460 TGGATTTGGAAACCAGTTCGTT 58.708 40.909 0.00 0.00 37.08 3.85
301 302 2.938838 TGGATTTGGAAACCAGTTCGT 58.061 42.857 0.00 0.00 37.08 3.85
303 304 4.321974 GGTGATGGATTTGGAAACCAGTTC 60.322 45.833 0.00 0.00 37.12 3.01
304 305 3.578282 GGTGATGGATTTGGAAACCAGTT 59.422 43.478 0.00 0.00 37.12 3.16
305 306 3.165071 GGTGATGGATTTGGAAACCAGT 58.835 45.455 0.00 0.00 37.12 4.00
306 307 2.164219 CGGTGATGGATTTGGAAACCAG 59.836 50.000 0.00 0.00 37.12 4.00
307 308 2.166829 CGGTGATGGATTTGGAAACCA 58.833 47.619 0.00 0.00 38.09 3.67
309 310 4.718940 AATCGGTGATGGATTTGGAAAC 57.281 40.909 0.00 0.00 30.14 2.78
310 311 8.526667 TTTATAATCGGTGATGGATTTGGAAA 57.473 30.769 0.00 0.00 35.78 3.13
311 312 7.996066 TCTTTATAATCGGTGATGGATTTGGAA 59.004 33.333 0.00 0.00 35.78 3.53
313 314 7.571244 CGTCTTTATAATCGGTGATGGATTTGG 60.571 40.741 0.00 0.00 35.78 3.28
314 315 7.170828 TCGTCTTTATAATCGGTGATGGATTTG 59.829 37.037 0.00 0.00 35.78 2.32
316 317 6.645415 GTCGTCTTTATAATCGGTGATGGATT 59.355 38.462 0.00 0.00 37.79 3.01
317 318 6.157211 GTCGTCTTTATAATCGGTGATGGAT 58.843 40.000 0.00 0.00 0.00 3.41
318 319 5.508489 GGTCGTCTTTATAATCGGTGATGGA 60.508 44.000 0.00 0.00 0.00 3.41
319 320 4.684703 GGTCGTCTTTATAATCGGTGATGG 59.315 45.833 0.00 0.00 0.00 3.51
320 321 4.381863 CGGTCGTCTTTATAATCGGTGATG 59.618 45.833 0.00 0.00 0.00 3.07
321 322 4.543692 CGGTCGTCTTTATAATCGGTGAT 58.456 43.478 0.00 0.00 0.00 3.06
322 323 3.793129 GCGGTCGTCTTTATAATCGGTGA 60.793 47.826 0.00 0.00 0.00 4.02
323 324 2.470257 GCGGTCGTCTTTATAATCGGTG 59.530 50.000 0.00 0.00 0.00 4.94
324 325 2.544486 GGCGGTCGTCTTTATAATCGGT 60.544 50.000 0.00 0.00 0.00 4.69
325 326 2.056577 GGCGGTCGTCTTTATAATCGG 58.943 52.381 0.00 0.00 0.00 4.18
327 328 3.734735 GTGAGGCGGTCGTCTTTATAATC 59.265 47.826 0.00 0.00 0.00 1.75
328 329 3.492137 GGTGAGGCGGTCGTCTTTATAAT 60.492 47.826 0.00 0.00 0.00 1.28
329 330 2.159198 GGTGAGGCGGTCGTCTTTATAA 60.159 50.000 0.00 0.00 0.00 0.98
331 332 0.175073 GGTGAGGCGGTCGTCTTTAT 59.825 55.000 0.00 0.00 0.00 1.40
332 333 1.588082 GGTGAGGCGGTCGTCTTTA 59.412 57.895 0.00 0.00 0.00 1.85
333 334 2.342648 GGTGAGGCGGTCGTCTTT 59.657 61.111 0.00 0.00 0.00 2.52
334 335 4.052229 CGGTGAGGCGGTCGTCTT 62.052 66.667 0.00 0.00 0.00 3.01
338 339 3.277211 TTCTTCGGTGAGGCGGTCG 62.277 63.158 0.00 0.00 0.00 4.79
339 340 1.446272 CTTCTTCGGTGAGGCGGTC 60.446 63.158 0.00 0.00 0.00 4.79
340 341 1.469335 TTCTTCTTCGGTGAGGCGGT 61.469 55.000 0.00 0.00 0.00 5.68
341 342 0.108138 ATTCTTCTTCGGTGAGGCGG 60.108 55.000 0.00 0.00 0.00 6.13
342 343 1.281899 GATTCTTCTTCGGTGAGGCG 58.718 55.000 0.00 0.00 0.00 5.52
343 344 1.657822 GGATTCTTCTTCGGTGAGGC 58.342 55.000 0.00 0.00 0.00 4.70
344 345 1.476891 TCGGATTCTTCTTCGGTGAGG 59.523 52.381 0.00 0.00 0.00 3.86
346 347 2.674177 GCTTCGGATTCTTCTTCGGTGA 60.674 50.000 0.00 0.00 0.00 4.02
347 348 1.661112 GCTTCGGATTCTTCTTCGGTG 59.339 52.381 0.00 0.00 0.00 4.94
348 349 1.550976 AGCTTCGGATTCTTCTTCGGT 59.449 47.619 0.00 0.00 0.00 4.69
349 350 2.301577 AGCTTCGGATTCTTCTTCGG 57.698 50.000 0.00 0.00 0.00 4.30
350 351 4.670227 AAAAGCTTCGGATTCTTCTTCG 57.330 40.909 0.00 0.00 0.00 3.79
369 370 2.539953 CGGCGGCGATGCTAAATAAAAA 60.540 45.455 29.19 0.00 34.52 1.94
370 371 1.003331 CGGCGGCGATGCTAAATAAAA 60.003 47.619 29.19 0.00 34.52 1.52
372 373 1.837538 GCGGCGGCGATGCTAAATAA 61.838 55.000 36.87 0.00 34.52 1.40
373 374 2.314647 GCGGCGGCGATGCTAAATA 61.315 57.895 36.87 0.00 34.52 1.40
394 395 1.831389 CGACATATTGGCTTCGGCGG 61.831 60.000 7.21 0.00 42.91 6.13
395 396 0.874175 TCGACATATTGGCTTCGGCG 60.874 55.000 0.00 0.00 42.91 6.46
396 397 1.003866 GTTCGACATATTGGCTTCGGC 60.004 52.381 0.00 0.00 40.88 5.54
397 398 1.257936 CGTTCGACATATTGGCTTCGG 59.742 52.381 0.00 0.00 32.28 4.30
398 399 2.190161 TCGTTCGACATATTGGCTTCG 58.810 47.619 0.00 0.00 0.00 3.79
399 400 4.051922 AGATCGTTCGACATATTGGCTTC 58.948 43.478 0.00 0.00 0.00 3.86
401 402 3.735237 AGATCGTTCGACATATTGGCT 57.265 42.857 0.00 0.00 0.00 4.75
402 403 5.900339 TTTAGATCGTTCGACATATTGGC 57.100 39.130 0.00 0.00 0.00 4.52
403 404 7.011109 AGGTTTTTAGATCGTTCGACATATTGG 59.989 37.037 0.00 0.00 0.00 3.16
404 405 7.906160 AGGTTTTTAGATCGTTCGACATATTG 58.094 34.615 0.00 0.00 0.00 1.90
406 407 9.245962 CTTAGGTTTTTAGATCGTTCGACATAT 57.754 33.333 0.00 0.00 0.00 1.78
407 408 8.246180 ACTTAGGTTTTTAGATCGTTCGACATA 58.754 33.333 0.00 0.00 0.00 2.29
408 409 7.095270 ACTTAGGTTTTTAGATCGTTCGACAT 58.905 34.615 0.00 0.00 0.00 3.06
409 410 6.449698 ACTTAGGTTTTTAGATCGTTCGACA 58.550 36.000 0.00 0.00 0.00 4.35
410 411 6.941218 ACTTAGGTTTTTAGATCGTTCGAC 57.059 37.500 0.00 0.00 0.00 4.20
411 412 9.643693 AATAACTTAGGTTTTTAGATCGTTCGA 57.356 29.630 0.00 0.00 36.92 3.71
431 432 9.194972 GTTGTAGGTTCTAGTACCCTAATAACT 57.805 37.037 14.44 0.00 39.08 2.24
432 433 9.194972 AGTTGTAGGTTCTAGTACCCTAATAAC 57.805 37.037 14.44 13.62 39.08 1.89
435 436 9.774071 TTTAGTTGTAGGTTCTAGTACCCTAAT 57.226 33.333 14.44 0.00 39.08 1.73
436 437 9.600432 TTTTAGTTGTAGGTTCTAGTACCCTAA 57.400 33.333 14.44 11.20 39.08 2.69
437 438 9.774071 ATTTTAGTTGTAGGTTCTAGTACCCTA 57.226 33.333 14.44 7.63 39.08 3.53
443 444 7.980099 CGGATCATTTTAGTTGTAGGTTCTAGT 59.020 37.037 0.00 0.00 0.00 2.57
444 445 7.042658 GCGGATCATTTTAGTTGTAGGTTCTAG 60.043 40.741 0.00 0.00 0.00 2.43
446 447 5.585047 GCGGATCATTTTAGTTGTAGGTTCT 59.415 40.000 0.00 0.00 0.00 3.01
447 448 5.353123 TGCGGATCATTTTAGTTGTAGGTTC 59.647 40.000 0.00 0.00 0.00 3.62
448 449 5.250200 TGCGGATCATTTTAGTTGTAGGTT 58.750 37.500 0.00 0.00 0.00 3.50
449 450 4.839121 TGCGGATCATTTTAGTTGTAGGT 58.161 39.130 0.00 0.00 0.00 3.08
454 455 4.031418 TGCATGCGGATCATTTTAGTTG 57.969 40.909 14.09 0.00 31.79 3.16
455 456 4.500205 CCATGCATGCGGATCATTTTAGTT 60.500 41.667 21.69 0.00 31.79 2.24
456 457 3.005050 CCATGCATGCGGATCATTTTAGT 59.995 43.478 21.69 0.00 31.79 2.24
458 459 2.296752 CCCATGCATGCGGATCATTTTA 59.703 45.455 21.69 0.00 31.79 1.52
461 462 0.178984 TCCCATGCATGCGGATCATT 60.179 50.000 24.66 0.00 31.79 2.57
462 463 0.039180 ATCCCATGCATGCGGATCAT 59.961 50.000 29.48 17.62 34.73 2.45
464 465 1.310933 GGATCCCATGCATGCGGATC 61.311 60.000 38.04 38.04 44.76 3.36
465 466 1.303888 GGATCCCATGCATGCGGAT 60.304 57.895 32.66 32.66 39.19 4.18
466 467 2.113774 GGATCCCATGCATGCGGA 59.886 61.111 28.22 28.22 33.64 5.54
467 468 3.359523 CGGATCCCATGCATGCGG 61.360 66.667 21.69 21.70 31.96 5.69
468 469 3.359523 CCGGATCCCATGCATGCG 61.360 66.667 21.69 17.49 35.08 4.73
469 470 2.203394 ACCGGATCCCATGCATGC 60.203 61.111 21.69 11.82 0.00 4.06
470 471 1.148949 TCACCGGATCCCATGCATG 59.851 57.895 20.19 20.19 0.00 4.06
471 472 1.149174 GTCACCGGATCCCATGCAT 59.851 57.895 9.46 0.00 0.00 3.96
473 474 2.203209 GGTCACCGGATCCCATGC 60.203 66.667 9.46 1.54 0.00 4.06
474 475 2.510906 GGGTCACCGGATCCCATG 59.489 66.667 21.68 4.77 38.47 3.66
486 487 3.608662 GTCGGTGGTGACGGGTCA 61.609 66.667 0.00 0.00 37.24 4.02
492 493 0.810823 TTTTGGTCGTCGGTGGTGAC 60.811 55.000 0.00 0.00 35.49 3.67
493 494 0.531090 CTTTTGGTCGTCGGTGGTGA 60.531 55.000 0.00 0.00 0.00 4.02
495 496 1.227734 CCTTTTGGTCGTCGGTGGT 60.228 57.895 0.00 0.00 34.07 4.16
496 497 3.650369 CCTTTTGGTCGTCGGTGG 58.350 61.111 0.00 0.00 34.07 4.61
506 507 1.079405 TCCGCTAGCGACCTTTTGG 60.079 57.895 37.39 18.19 42.83 3.28
509 510 2.722201 CCCTCCGCTAGCGACCTTT 61.722 63.158 37.39 0.00 42.83 3.11
513 514 3.597728 CTCCCCTCCGCTAGCGAC 61.598 72.222 37.39 0.00 42.83 5.19
514 515 4.124943 ACTCCCCTCCGCTAGCGA 62.125 66.667 37.39 21.64 42.83 4.93
516 517 3.597728 CGACTCCCCTCCGCTAGC 61.598 72.222 4.06 4.06 0.00 3.42
517 518 3.597728 GCGACTCCCCTCCGCTAG 61.598 72.222 0.00 0.00 44.83 3.42
522 523 3.372554 CTTTCGGCGACTCCCCTCC 62.373 68.421 10.16 0.00 0.00 4.30
523 524 2.184579 CTTTCGGCGACTCCCCTC 59.815 66.667 10.16 0.00 0.00 4.30
524 525 2.283676 TCTTTCGGCGACTCCCCT 60.284 61.111 10.16 0.00 0.00 4.79
525 526 2.125633 GTCTTTCGGCGACTCCCC 60.126 66.667 10.16 0.00 0.00 4.81
526 527 2.506438 CGTCTTTCGGCGACTCCC 60.506 66.667 10.16 0.00 35.71 4.30
535 536 0.942410 TCTTTCGGTGCCGTCTTTCG 60.942 55.000 10.60 0.00 40.74 3.46
536 537 0.790814 CTCTTTCGGTGCCGTCTTTC 59.209 55.000 10.60 0.00 40.74 2.62
538 539 1.668151 GCTCTTTCGGTGCCGTCTT 60.668 57.895 10.60 0.00 40.74 3.01
540 541 2.048127 AGCTCTTTCGGTGCCGTC 60.048 61.111 10.60 0.00 40.74 4.79
542 543 3.121030 CCAGCTCTTTCGGTGCCG 61.121 66.667 3.94 3.94 41.35 5.69
544 545 0.603975 AGAACCAGCTCTTTCGGTGC 60.604 55.000 0.00 0.00 31.94 5.01
545 546 1.001406 AGAGAACCAGCTCTTTCGGTG 59.999 52.381 0.00 0.00 42.41 4.94
546 547 1.343069 AGAGAACCAGCTCTTTCGGT 58.657 50.000 0.00 0.00 42.41 4.69
552 553 1.294780 CGCCAAGAGAACCAGCTCT 59.705 57.895 0.00 0.00 46.81 4.09
553 554 1.743252 CCGCCAAGAGAACCAGCTC 60.743 63.158 0.00 0.00 35.11 4.09
554 555 2.348998 CCGCCAAGAGAACCAGCT 59.651 61.111 0.00 0.00 0.00 4.24
555 556 3.435186 GCCGCCAAGAGAACCAGC 61.435 66.667 0.00 0.00 0.00 4.85
556 557 3.121030 CGCCGCCAAGAGAACCAG 61.121 66.667 0.00 0.00 0.00 4.00
557 558 4.697756 CCGCCGCCAAGAGAACCA 62.698 66.667 0.00 0.00 0.00 3.67
575 576 2.572095 TATGTTGACCCTCAGCGCCG 62.572 60.000 2.29 0.00 29.60 6.46
576 577 0.179045 ATATGTTGACCCTCAGCGCC 60.179 55.000 2.29 0.00 29.60 6.53
577 578 1.668419 AATATGTTGACCCTCAGCGC 58.332 50.000 0.00 0.00 29.60 5.92
578 579 2.355756 CCAAATATGTTGACCCTCAGCG 59.644 50.000 0.00 0.00 29.60 5.18
579 580 2.099756 GCCAAATATGTTGACCCTCAGC 59.900 50.000 0.00 0.00 0.00 4.26
580 581 3.624777 AGCCAAATATGTTGACCCTCAG 58.375 45.455 0.00 0.00 0.00 3.35
581 582 3.737559 AGCCAAATATGTTGACCCTCA 57.262 42.857 0.00 0.00 0.00 3.86
582 583 4.137543 CCTAGCCAAATATGTTGACCCTC 58.862 47.826 0.00 0.00 0.00 4.30
583 584 3.117512 CCCTAGCCAAATATGTTGACCCT 60.118 47.826 0.00 0.00 0.00 4.34
584 585 3.117663 TCCCTAGCCAAATATGTTGACCC 60.118 47.826 0.00 0.00 0.00 4.46
586 587 4.781934 AGTCCCTAGCCAAATATGTTGAC 58.218 43.478 0.00 0.00 0.00 3.18
587 588 4.473196 TGAGTCCCTAGCCAAATATGTTGA 59.527 41.667 0.00 0.00 0.00 3.18
588 589 4.576463 GTGAGTCCCTAGCCAAATATGTTG 59.424 45.833 0.00 0.00 0.00 3.33
589 590 4.475016 AGTGAGTCCCTAGCCAAATATGTT 59.525 41.667 0.00 0.00 0.00 2.71
591 592 4.503991 GGAGTGAGTCCCTAGCCAAATATG 60.504 50.000 0.00 0.00 39.88 1.78
592 593 3.648545 GGAGTGAGTCCCTAGCCAAATAT 59.351 47.826 0.00 0.00 39.88 1.28
594 595 1.840635 GGAGTGAGTCCCTAGCCAAAT 59.159 52.381 0.00 0.00 39.88 2.32
595 596 1.276622 GGAGTGAGTCCCTAGCCAAA 58.723 55.000 0.00 0.00 39.88 3.28
596 597 0.970937 CGGAGTGAGTCCCTAGCCAA 60.971 60.000 0.00 0.00 43.47 4.52
597 598 1.379977 CGGAGTGAGTCCCTAGCCA 60.380 63.158 0.00 0.00 43.47 4.75
598 599 0.106819 TACGGAGTGAGTCCCTAGCC 60.107 60.000 0.00 0.00 45.73 3.93
599 600 1.984066 ATACGGAGTGAGTCCCTAGC 58.016 55.000 0.00 0.00 45.73 3.42
600 601 2.034812 GCAATACGGAGTGAGTCCCTAG 59.965 54.545 0.00 0.00 45.73 3.02
601 602 2.029623 GCAATACGGAGTGAGTCCCTA 58.970 52.381 0.00 0.00 45.73 3.53
602 603 0.824759 GCAATACGGAGTGAGTCCCT 59.175 55.000 0.00 0.00 45.73 4.20
603 604 0.535335 TGCAATACGGAGTGAGTCCC 59.465 55.000 0.00 0.00 45.73 4.46
604 605 1.641577 GTGCAATACGGAGTGAGTCC 58.358 55.000 0.00 0.00 45.73 3.85
639 640 1.531883 GGAAAAACGCATGCCGAGATC 60.532 52.381 13.15 5.53 41.02 2.75
754 1103 1.004927 GATCGACTTTCCGAATTGGCG 60.005 52.381 0.00 4.16 42.22 5.69
755 1104 2.280628 AGATCGACTTTCCGAATTGGC 58.719 47.619 0.00 0.00 42.22 4.52
948 1363 0.884704 CCTCGGGTTGGACTGTGTTG 60.885 60.000 0.00 0.00 0.00 3.33
949 1364 1.052124 TCCTCGGGTTGGACTGTGTT 61.052 55.000 0.00 0.00 0.00 3.32
950 1365 1.458777 TCCTCGGGTTGGACTGTGT 60.459 57.895 0.00 0.00 0.00 3.72
951 1366 1.185618 TCTCCTCGGGTTGGACTGTG 61.186 60.000 0.00 0.00 0.00 3.66
952 1367 0.252284 ATCTCCTCGGGTTGGACTGT 60.252 55.000 0.00 0.00 0.00 3.55
953 1368 0.461961 GATCTCCTCGGGTTGGACTG 59.538 60.000 0.00 0.00 0.00 3.51
954 1369 1.038130 CGATCTCCTCGGGTTGGACT 61.038 60.000 0.00 0.00 43.82 3.85
955 1370 1.437986 CGATCTCCTCGGGTTGGAC 59.562 63.158 0.00 0.00 43.82 4.02
956 1371 3.935024 CGATCTCCTCGGGTTGGA 58.065 61.111 0.00 0.00 43.82 3.53
985 1547 2.305853 CCATTCTCGCTCGCGGATG 61.306 63.158 6.13 12.31 40.25 3.51
1398 3400 4.961511 GTGACGGTCAGCACGCCA 62.962 66.667 11.83 0.00 34.00 5.69
1471 3473 4.082523 GCTACGCCACTGCCTGGA 62.083 66.667 0.00 0.00 43.95 3.86
1472 3474 4.087892 AGCTACGCCACTGCCTGG 62.088 66.667 0.00 0.00 44.08 4.45
1474 3476 1.949847 CTACAGCTACGCCACTGCCT 61.950 60.000 0.00 0.00 37.42 4.75
4786 7028 2.348140 GATTCGACGCGCACACCATC 62.348 60.000 5.73 0.00 0.00 3.51
4789 7031 4.191485 CGATTCGACGCGCACACC 62.191 66.667 5.73 0.00 0.00 4.16
4923 7417 5.127031 CCCCATTTCCATTAACGAAACATCT 59.873 40.000 0.00 0.00 32.30 2.90
4962 7464 6.209192 ACAGAATCACATGTTTTATTCAGGCA 59.791 34.615 19.76 0.00 32.04 4.75
4979 7481 4.943705 GTGGCCAAGAGAAATACAGAATCA 59.056 41.667 7.24 0.00 0.00 2.57
4982 7484 4.365514 TGTGGCCAAGAGAAATACAGAA 57.634 40.909 7.24 0.00 0.00 3.02
4983 7485 4.574674 ATGTGGCCAAGAGAAATACAGA 57.425 40.909 7.24 0.00 0.00 3.41
4984 7486 5.649782 AAATGTGGCCAAGAGAAATACAG 57.350 39.130 7.24 0.00 0.00 2.74
4986 7488 6.272822 AGAAAATGTGGCCAAGAGAAATAC 57.727 37.500 7.24 0.00 0.00 1.89
4987 7489 8.469200 CAATAGAAAATGTGGCCAAGAGAAATA 58.531 33.333 7.24 0.00 0.00 1.40
4988 7490 7.178983 TCAATAGAAAATGTGGCCAAGAGAAAT 59.821 33.333 7.24 0.00 0.00 2.17
4989 7491 6.493115 TCAATAGAAAATGTGGCCAAGAGAAA 59.507 34.615 7.24 0.00 0.00 2.52
5090 7593 6.992664 TTCTGAATTCTTCCCAAAATGGAA 57.007 33.333 7.05 0.00 40.96 3.53
5091 7594 6.992664 TTTCTGAATTCTTCCCAAAATGGA 57.007 33.333 7.05 0.00 40.96 3.41
5092 7595 8.625786 ATTTTTCTGAATTCTTCCCAAAATGG 57.374 30.769 7.05 0.00 37.25 3.16
5093 7596 8.724229 GGATTTTTCTGAATTCTTCCCAAAATG 58.276 33.333 7.05 0.00 29.25 2.32
5095 7598 7.800092 TGGATTTTTCTGAATTCTTCCCAAAA 58.200 30.769 7.05 5.73 0.00 2.44
5096 7599 7.372260 TGGATTTTTCTGAATTCTTCCCAAA 57.628 32.000 7.05 0.66 0.00 3.28
5097 7600 6.992664 TGGATTTTTCTGAATTCTTCCCAA 57.007 33.333 7.05 0.00 0.00 4.12
5098 7601 8.843308 ATATGGATTTTTCTGAATTCTTCCCA 57.157 30.769 7.05 3.71 0.00 4.37
5107 7610 9.087871 TGGAAGACAAATATGGATTTTTCTGAA 57.912 29.630 1.05 0.00 39.90 3.02
5121 7786 9.581289 TGTTAAGAGGAAAATGGAAGACAAATA 57.419 29.630 0.00 0.00 0.00 1.40
5122 7787 8.477419 TGTTAAGAGGAAAATGGAAGACAAAT 57.523 30.769 0.00 0.00 0.00 2.32
5123 7788 7.889873 TGTTAAGAGGAAAATGGAAGACAAA 57.110 32.000 0.00 0.00 0.00 2.83
5124 7789 7.889873 TTGTTAAGAGGAAAATGGAAGACAA 57.110 32.000 0.00 0.00 0.00 3.18
5131 7796 6.587608 GCAGACATTTGTTAAGAGGAAAATGG 59.412 38.462 10.65 0.00 41.93 3.16
5139 7805 5.922544 CCAAAAGGCAGACATTTGTTAAGAG 59.077 40.000 3.32 0.00 33.31 2.85
5178 7853 8.331740 TCTGAATTCTCAATTCTAACTGGGATT 58.668 33.333 7.05 0.00 45.85 3.01
5180 7855 7.257790 TCTGAATTCTCAATTCTAACTGGGA 57.742 36.000 7.05 0.00 45.85 4.37
5181 7856 7.928307 TTCTGAATTCTCAATTCTAACTGGG 57.072 36.000 7.05 0.00 45.85 4.45
5266 7976 7.007723 TGGGTGGAAAAAGTCAACACTATATT 58.992 34.615 0.00 0.00 34.22 1.28
5413 8298 0.038599 TCTCGGGTGTAGGTGCACTA 59.961 55.000 17.98 4.35 39.21 2.74
5414 8299 1.228769 TCTCGGGTGTAGGTGCACT 60.229 57.895 17.98 5.41 39.21 4.40
5475 8372 1.408702 TCAAGTTGCCTTTGTCCTTGC 59.591 47.619 0.00 0.00 34.07 4.01
5476 8373 5.241506 TCTTATCAAGTTGCCTTTGTCCTTG 59.758 40.000 0.00 0.00 35.09 3.61
5581 8499 2.486918 TCGACCGACTAATAGATGCGA 58.513 47.619 0.00 0.00 0.00 5.10
5586 8504 9.590451 AAATTTTGTTATCGACCGACTAATAGA 57.410 29.630 0.00 0.00 0.00 1.98
5613 8535 9.952188 GGGCTTTATCATCAATTTTACTTAGAC 57.048 33.333 0.00 0.00 0.00 2.59
5615 8537 8.836413 TCGGGCTTTATCATCAATTTTACTTAG 58.164 33.333 0.00 0.00 0.00 2.18
5616 8538 8.740123 TCGGGCTTTATCATCAATTTTACTTA 57.260 30.769 0.00 0.00 0.00 2.24
5678 8610 8.370182 GGGAGCATAAAATTCCATGTCATTTAT 58.630 33.333 0.00 0.00 32.50 1.40
5680 8612 6.156602 TGGGAGCATAAAATTCCATGTCATTT 59.843 34.615 0.00 0.00 32.50 2.32
5683 8615 4.608269 TGGGAGCATAAAATTCCATGTCA 58.392 39.130 0.00 0.00 32.50 3.58
5692 8624 6.670695 AGTTTGAGTTTGGGAGCATAAAAT 57.329 33.333 0.00 0.00 0.00 1.82
5704 8637 1.336755 CCACCCCGAAGTTTGAGTTTG 59.663 52.381 0.00 0.00 0.00 2.93
5707 8640 0.549469 AACCACCCCGAAGTTTGAGT 59.451 50.000 0.00 0.00 0.00 3.41
5729 8662 3.640967 AGTGGCAAATTGTAGCTTGGAAA 59.359 39.130 0.00 0.00 0.00 3.13
5751 8684 6.683715 TGTCTAAGTCGATATGTGACAAACA 58.316 36.000 7.29 3.74 44.79 2.83
5752 8685 7.328737 ACTTGTCTAAGTCGATATGTGACAAAC 59.671 37.037 17.66 1.81 43.53 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.