Multiple sequence alignment - TraesCS3B01G130500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G130500 chr3B 100.000 2812 0 0 1 2812 112837128 112834317 0.000000e+00 5193.0
1 TraesCS3B01G130500 chr3B 94.128 1090 35 8 876 1954 113299472 113298401 0.000000e+00 1631.0
2 TraesCS3B01G130500 chr3B 89.956 1125 63 22 876 1985 112948604 112947515 0.000000e+00 1406.0
3 TraesCS3B01G130500 chr3B 93.968 862 18 15 1953 2812 113298297 113297468 0.000000e+00 1273.0
4 TraesCS3B01G130500 chr3B 90.123 810 54 11 876 1678 112497360 112496570 0.000000e+00 1029.0
5 TraesCS3B01G130500 chr3B 85.826 1023 81 32 818 1810 112465935 112464947 0.000000e+00 1027.0
6 TraesCS3B01G130500 chr3B 90.845 426 34 2 2139 2562 112496303 112495881 1.460000e-157 566.0
7 TraesCS3B01G130500 chr3B 92.000 275 20 2 1739 2011 112496579 112496305 4.390000e-103 385.0
8 TraesCS3B01G130500 chr3B 87.240 337 22 11 1574 1901 113487282 113487606 5.720000e-97 364.0
9 TraesCS3B01G130500 chr3B 90.458 262 19 5 2553 2811 112494445 112494187 9.650000e-90 340.0
10 TraesCS3B01G130500 chr3B 90.566 159 11 4 1981 2138 113487631 113487786 1.020000e-49 207.0
11 TraesCS3B01G130500 chr3B 87.952 166 18 2 438 601 111678926 111678761 7.950000e-46 195.0
12 TraesCS3B01G130500 chr3D 92.349 1294 62 11 876 2156 68430337 68431606 0.000000e+00 1807.0
13 TraesCS3B01G130500 chr3D 88.471 1171 61 23 815 1959 68388885 68390007 0.000000e+00 1347.0
14 TraesCS3B01G130500 chr3D 89.273 839 55 16 822 1636 68336087 68335260 0.000000e+00 1018.0
15 TraesCS3B01G130500 chr3D 90.387 749 55 10 882 1627 68325792 68325058 0.000000e+00 968.0
16 TraesCS3B01G130500 chr3D 89.628 752 45 12 939 1678 68833105 68833835 0.000000e+00 926.0
17 TraesCS3B01G130500 chr3D 86.438 730 70 18 2102 2811 68834197 68834917 0.000000e+00 773.0
18 TraesCS3B01G130500 chr3D 88.594 377 32 6 1752 2119 68325013 68324639 5.530000e-122 448.0
19 TraesCS3B01G130500 chr3D 79.969 654 75 33 2162 2783 68431672 68432301 5.560000e-117 431.0
20 TraesCS3B01G130500 chr3D 96.818 220 5 2 1742 1959 68335236 68335017 1.590000e-97 366.0
21 TraesCS3B01G130500 chr3D 91.837 245 19 1 1997 2240 68390005 68390249 9.650000e-90 340.0
22 TraesCS3B01G130500 chr3D 81.818 363 45 16 53 398 355617328 355617686 4.580000e-73 285.0
23 TraesCS3B01G130500 chr3D 81.701 388 27 15 1741 2118 68833828 68834181 1.650000e-72 283.0
24 TraesCS3B01G130500 chr3D 93.443 122 5 2 2023 2141 68329370 68329249 8.000000e-41 178.0
25 TraesCS3B01G130500 chr3D 92.982 114 5 1 2028 2141 68335018 68334908 2.240000e-36 163.0
26 TraesCS3B01G130500 chr3A 87.063 1260 97 35 882 2119 80289674 80288459 0.000000e+00 1363.0
27 TraesCS3B01G130500 chr3A 88.727 958 57 26 876 1806 80412888 80413821 0.000000e+00 1123.0
28 TraesCS3B01G130500 chr3A 89.879 494 33 9 1644 2125 80410291 80409803 1.110000e-173 619.0
29 TraesCS3B01G130500 chr3A 92.701 274 16 3 417 686 8568523 8568250 2.630000e-105 392.0
30 TraesCS3B01G130500 chr3A 82.880 368 51 11 43 404 36771617 36771256 1.260000e-83 320.0
31 TraesCS3B01G130500 chr3A 79.320 353 53 11 53 390 474388858 474389205 2.180000e-56 230.0
32 TraesCS3B01G130500 chr4D 87.770 1063 81 19 891 1939 134563090 134564117 0.000000e+00 1197.0
33 TraesCS3B01G130500 chr4D 90.206 776 55 10 878 1636 134550601 134549830 0.000000e+00 992.0
34 TraesCS3B01G130500 chr4D 93.133 233 9 3 1739 1970 134549790 134549564 4.490000e-88 335.0
35 TraesCS3B01G130500 chr4D 88.750 160 18 0 1960 2119 134564270 134564429 2.210000e-46 196.0
36 TraesCS3B01G130500 chr4D 90.541 148 14 0 1972 2119 134566410 134566263 2.210000e-46 196.0
37 TraesCS3B01G130500 chr7B 87.412 850 69 20 882 1720 603657032 603657854 0.000000e+00 942.0
38 TraesCS3B01G130500 chr6B 94.030 268 15 1 420 686 620266878 620266611 3.370000e-109 405.0
39 TraesCS3B01G130500 chr6B 80.800 375 51 15 43 398 66974437 66974065 9.920000e-70 274.0
40 TraesCS3B01G130500 chr6B 75.350 357 47 25 54 398 567763975 567763648 1.760000e-27 134.0
41 TraesCS3B01G130500 chr6B 89.286 84 4 5 625 703 54737345 54737262 1.780000e-17 100.0
42 TraesCS3B01G130500 chr6B 86.517 89 6 5 625 707 54782288 54782200 2.980000e-15 93.5
43 TraesCS3B01G130500 chr2A 93.657 268 15 2 420 686 36021801 36021535 1.570000e-107 399.0
44 TraesCS3B01G130500 chr2A 94.468 235 11 2 417 650 30175557 30175324 7.400000e-96 361.0
45 TraesCS3B01G130500 chr1A 94.208 259 14 1 429 686 387338390 387338648 7.300000e-106 394.0
46 TraesCS3B01G130500 chrUn 92.565 269 18 2 420 686 35797610 35797342 4.390000e-103 385.0
47 TraesCS3B01G130500 chrUn 77.957 186 32 8 77 257 51494821 51495002 1.070000e-19 108.0
48 TraesCS3B01G130500 chr5A 93.462 260 15 2 429 686 663324667 663324408 4.390000e-103 385.0
49 TraesCS3B01G130500 chr5A 94.068 236 12 2 417 651 563891931 563891697 9.580000e-95 357.0
50 TraesCS3B01G130500 chr5A 80.214 374 51 13 44 398 19634087 19633718 2.780000e-65 259.0
51 TraesCS3B01G130500 chr5A 97.674 43 1 0 2354 2396 680496670 680496712 1.080000e-09 75.0
52 TraesCS3B01G130500 chr2D 89.706 272 24 4 417 686 128418359 128418628 7.460000e-91 344.0
53 TraesCS3B01G130500 chr2D 77.459 244 35 14 42 266 13676774 13676532 8.180000e-26 128.0
54 TraesCS3B01G130500 chr5B 87.097 186 23 1 420 604 678442337 678442152 2.840000e-50 209.0
55 TraesCS3B01G130500 chr5B 95.238 63 2 1 625 686 609892189 609892251 6.410000e-17 99.0
56 TraesCS3B01G130500 chr1B 80.201 298 38 14 44 324 667011310 667011603 1.320000e-48 204.0
57 TraesCS3B01G130500 chr1B 74.062 320 54 18 44 340 13189522 13189835 1.380000e-18 104.0
58 TraesCS3B01G130500 chr7D 79.062 320 45 15 98 400 571004189 571003875 1.710000e-47 200.0
59 TraesCS3B01G130500 chr2B 75.137 366 63 17 54 398 648375200 648375558 2.260000e-31 147.0
60 TraesCS3B01G130500 chr4B 96.970 66 2 0 621 686 414190253 414190318 8.230000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G130500 chr3B 112834317 112837128 2811 True 5193.000000 5193 100.000000 1 2812 1 chr3B.!!$R3 2811
1 TraesCS3B01G130500 chr3B 113297468 113299472 2004 True 1452.000000 1631 94.048000 876 2812 2 chr3B.!!$R6 1936
2 TraesCS3B01G130500 chr3B 112947515 112948604 1089 True 1406.000000 1406 89.956000 876 1985 1 chr3B.!!$R4 1109
3 TraesCS3B01G130500 chr3B 112464947 112465935 988 True 1027.000000 1027 85.826000 818 1810 1 chr3B.!!$R2 992
4 TraesCS3B01G130500 chr3B 112494187 112497360 3173 True 580.000000 1029 90.856500 876 2811 4 chr3B.!!$R5 1935
5 TraesCS3B01G130500 chr3B 113487282 113487786 504 False 285.500000 364 88.903000 1574 2138 2 chr3B.!!$F1 564
6 TraesCS3B01G130500 chr3D 68430337 68432301 1964 False 1119.000000 1807 86.159000 876 2783 2 chr3D.!!$F3 1907
7 TraesCS3B01G130500 chr3D 68388885 68390249 1364 False 843.500000 1347 90.154000 815 2240 2 chr3D.!!$F2 1425
8 TraesCS3B01G130500 chr3D 68833105 68834917 1812 False 660.666667 926 85.922333 939 2811 3 chr3D.!!$F4 1872
9 TraesCS3B01G130500 chr3D 68324639 68329370 4731 True 531.333333 968 90.808000 882 2141 3 chr3D.!!$R1 1259
10 TraesCS3B01G130500 chr3D 68334908 68336087 1179 True 515.666667 1018 93.024333 822 2141 3 chr3D.!!$R2 1319
11 TraesCS3B01G130500 chr3A 80288459 80289674 1215 True 1363.000000 1363 87.063000 882 2119 1 chr3A.!!$R3 1237
12 TraesCS3B01G130500 chr3A 80412888 80413821 933 False 1123.000000 1123 88.727000 876 1806 1 chr3A.!!$F1 930
13 TraesCS3B01G130500 chr4D 134563090 134564429 1339 False 696.500000 1197 88.260000 891 2119 2 chr4D.!!$F1 1228
14 TraesCS3B01G130500 chr4D 134549564 134550601 1037 True 663.500000 992 91.669500 878 1970 2 chr4D.!!$R2 1092
15 TraesCS3B01G130500 chr7B 603657032 603657854 822 False 942.000000 942 87.412000 882 1720 1 chr7B.!!$F1 838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 381 0.033228 CTCTCAAGAGGCGCCATAGG 59.967 60.0 31.54 15.57 38.48 2.57 F
451 452 0.034896 AGTTGGTTAGGTGGACAGCG 59.965 55.0 0.00 0.00 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1397 4164 0.971447 AGGTACTTGGCGTCCTCCTC 60.971 60.000 0.0 0.0 27.25 3.71 R
2021 5005 3.397527 TCTATCCTCCCAAAAGGCAGAT 58.602 45.455 0.0 0.0 36.29 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.757512 TCATGCCTCATGAGAGCTCC 59.242 55.000 24.62 2.40 44.60 4.70
39 40 0.250381 CATGCCTCATGAGAGCTCCC 60.250 60.000 24.62 0.00 43.81 4.30
40 41 1.417288 ATGCCTCATGAGAGCTCCCC 61.417 60.000 24.62 3.19 40.68 4.81
41 42 1.765657 GCCTCATGAGAGCTCCCCT 60.766 63.158 24.62 0.00 40.68 4.79
42 43 1.757423 GCCTCATGAGAGCTCCCCTC 61.757 65.000 24.62 1.86 40.68 4.30
46 47 3.237746 CTCATGAGAGCTCCCCTCATTA 58.762 50.000 18.34 4.26 46.03 1.90
47 48 3.645212 CTCATGAGAGCTCCCCTCATTAA 59.355 47.826 18.34 3.55 46.03 1.40
48 49 3.389329 TCATGAGAGCTCCCCTCATTAAC 59.611 47.826 10.93 0.00 46.03 2.01
49 50 2.119495 TGAGAGCTCCCCTCATTAACC 58.881 52.381 10.93 0.00 43.31 2.85
50 51 1.418264 GAGAGCTCCCCTCATTAACCC 59.582 57.143 10.93 0.00 43.31 4.11
51 52 1.010170 AGAGCTCCCCTCATTAACCCT 59.990 52.381 10.93 0.00 43.31 4.34
52 53 2.250273 AGAGCTCCCCTCATTAACCCTA 59.750 50.000 10.93 0.00 43.31 3.53
54 55 3.653352 GAGCTCCCCTCATTAACCCTATT 59.347 47.826 0.87 0.00 40.45 1.73
56 57 5.232347 AGCTCCCCTCATTAACCCTATTAA 58.768 41.667 0.00 0.00 0.00 1.40
57 58 5.310857 AGCTCCCCTCATTAACCCTATTAAG 59.689 44.000 0.00 0.00 0.00 1.85
58 59 5.561679 CTCCCCTCATTAACCCTATTAAGC 58.438 45.833 0.00 0.00 0.00 3.09
59 60 5.232347 TCCCCTCATTAACCCTATTAAGCT 58.768 41.667 0.00 0.00 0.00 3.74
60 61 6.395598 TCCCCTCATTAACCCTATTAAGCTA 58.604 40.000 0.00 0.00 0.00 3.32
61 62 6.271624 TCCCCTCATTAACCCTATTAAGCTAC 59.728 42.308 0.00 0.00 0.00 3.58
62 63 6.164176 CCCTCATTAACCCTATTAAGCTACG 58.836 44.000 0.00 0.00 0.00 3.51
63 64 5.638234 CCTCATTAACCCTATTAAGCTACGC 59.362 44.000 0.00 0.00 0.00 4.42
64 65 5.224888 TCATTAACCCTATTAAGCTACGCG 58.775 41.667 3.53 3.53 0.00 6.01
66 67 2.503920 ACCCTATTAAGCTACGCGTG 57.496 50.000 24.59 13.17 0.00 5.34
67 68 2.026641 ACCCTATTAAGCTACGCGTGA 58.973 47.619 24.59 5.06 0.00 4.35
68 69 2.428171 ACCCTATTAAGCTACGCGTGAA 59.572 45.455 24.59 8.37 0.00 3.18
70 71 3.050619 CCTATTAAGCTACGCGTGAAGG 58.949 50.000 24.59 12.10 0.00 3.46
71 72 1.935933 ATTAAGCTACGCGTGAAGGG 58.064 50.000 24.59 7.77 38.93 3.95
72 73 0.738412 TTAAGCTACGCGTGAAGGGC 60.738 55.000 24.59 17.01 36.05 5.19
79 80 2.785258 GCGTGAAGGGCGATCAAC 59.215 61.111 0.00 0.00 0.00 3.18
80 81 2.750888 GCGTGAAGGGCGATCAACC 61.751 63.158 0.00 0.00 0.00 3.77
81 82 1.375396 CGTGAAGGGCGATCAACCA 60.375 57.895 5.56 0.00 0.00 3.67
83 84 1.377202 TGAAGGGCGATCAACCAGC 60.377 57.895 5.56 0.00 0.00 4.85
84 85 1.078143 GAAGGGCGATCAACCAGCT 60.078 57.895 5.56 0.00 0.00 4.24
86 87 0.839946 AAGGGCGATCAACCAGCTAT 59.160 50.000 5.56 0.00 0.00 2.97
87 88 0.107456 AGGGCGATCAACCAGCTATG 59.893 55.000 5.56 0.00 0.00 2.23
88 89 1.510480 GGGCGATCAACCAGCTATGC 61.510 60.000 4.28 0.00 0.00 3.14
89 90 1.510480 GGCGATCAACCAGCTATGCC 61.510 60.000 0.00 0.00 0.00 4.40
90 91 0.815213 GCGATCAACCAGCTATGCCA 60.815 55.000 0.00 0.00 0.00 4.92
91 92 1.888215 CGATCAACCAGCTATGCCAT 58.112 50.000 0.00 0.00 0.00 4.40
92 93 1.534163 CGATCAACCAGCTATGCCATG 59.466 52.381 0.00 0.00 0.00 3.66
93 94 2.579873 GATCAACCAGCTATGCCATGT 58.420 47.619 0.00 0.00 0.00 3.21
94 95 1.753930 TCAACCAGCTATGCCATGTG 58.246 50.000 0.00 0.00 0.00 3.21
95 96 0.742505 CAACCAGCTATGCCATGTGG 59.257 55.000 0.00 0.00 38.53 4.17
97 98 0.394762 ACCAGCTATGCCATGTGGTG 60.395 55.000 7.24 6.19 40.09 4.17
98 99 1.731433 CCAGCTATGCCATGTGGTGC 61.731 60.000 0.35 1.43 37.57 5.01
99 100 1.033202 CAGCTATGCCATGTGGTGCA 61.033 55.000 0.35 0.00 42.52 4.57
100 101 0.323633 AGCTATGCCATGTGGTGCAA 60.324 50.000 0.35 0.00 41.50 4.08
102 103 1.736696 GCTATGCCATGTGGTGCAAAC 60.737 52.381 0.35 0.00 41.50 2.93
103 104 1.820519 CTATGCCATGTGGTGCAAACT 59.179 47.619 0.35 0.00 41.50 2.66
104 105 0.319083 ATGCCATGTGGTGCAAACTG 59.681 50.000 0.35 0.00 41.50 3.16
105 106 1.005867 GCCATGTGGTGCAAACTGG 60.006 57.895 0.35 1.71 37.57 4.00
106 107 1.005867 CCATGTGGTGCAAACTGGC 60.006 57.895 0.00 0.00 0.00 4.85
107 108 1.466025 CCATGTGGTGCAAACTGGCT 61.466 55.000 0.00 0.00 34.04 4.75
108 109 0.319211 CATGTGGTGCAAACTGGCTG 60.319 55.000 0.00 0.00 34.04 4.85
109 110 1.466025 ATGTGGTGCAAACTGGCTGG 61.466 55.000 0.00 0.00 34.04 4.85
110 111 3.225798 TGGTGCAAACTGGCTGGC 61.226 61.111 0.00 0.00 34.04 4.85
111 112 3.994853 GGTGCAAACTGGCTGGCC 61.995 66.667 4.43 4.43 34.04 5.36
113 114 3.225798 TGCAAACTGGCTGGCCAC 61.226 61.111 10.55 0.00 41.89 5.01
114 115 4.347453 GCAAACTGGCTGGCCACG 62.347 66.667 10.55 9.41 41.89 4.94
116 117 4.204028 AAACTGGCTGGCCACGGT 62.204 61.111 10.55 0.40 41.89 4.83
121 122 4.329545 GGCTGGCCACGGTGAGAA 62.330 66.667 10.28 0.00 35.81 2.87
124 125 1.648467 GCTGGCCACGGTGAGAAATC 61.648 60.000 10.28 0.00 0.00 2.17
125 126 0.036010 CTGGCCACGGTGAGAAATCT 60.036 55.000 10.28 0.00 0.00 2.40
127 128 1.202879 TGGCCACGGTGAGAAATCTTT 60.203 47.619 10.28 0.00 0.00 2.52
129 130 3.078837 GGCCACGGTGAGAAATCTTTTA 58.921 45.455 10.28 0.00 0.00 1.52
132 133 4.454504 GCCACGGTGAGAAATCTTTTAGAA 59.545 41.667 10.28 0.00 0.00 2.10
138 139 9.463443 ACGGTGAGAAATCTTTTAGAATTTTTG 57.537 29.630 0.00 0.00 0.00 2.44
139 140 9.463443 CGGTGAGAAATCTTTTAGAATTTTTGT 57.537 29.630 0.00 0.00 0.00 2.83
151 152 8.754991 TTTAGAATTTTTGTAGAAGGTGTGGA 57.245 30.769 0.00 0.00 0.00 4.02
152 153 8.934023 TTAGAATTTTTGTAGAAGGTGTGGAT 57.066 30.769 0.00 0.00 0.00 3.41
154 155 8.934023 AGAATTTTTGTAGAAGGTGTGGATTA 57.066 30.769 0.00 0.00 0.00 1.75
155 156 9.533831 AGAATTTTTGTAGAAGGTGTGGATTAT 57.466 29.630 0.00 0.00 0.00 1.28
205 206 7.845066 GGTGAAGACCTCTCGTATTTTTAAT 57.155 36.000 0.00 0.00 39.47 1.40
206 207 7.685594 GGTGAAGACCTCTCGTATTTTTAATG 58.314 38.462 0.00 0.00 39.47 1.90
207 208 7.180748 GTGAAGACCTCTCGTATTTTTAATGC 58.819 38.462 0.00 0.00 0.00 3.56
209 210 7.552687 TGAAGACCTCTCGTATTTTTAATGCAT 59.447 33.333 0.00 0.00 0.00 3.96
210 211 7.251704 AGACCTCTCGTATTTTTAATGCATG 57.748 36.000 0.00 0.00 0.00 4.06
211 212 6.260936 AGACCTCTCGTATTTTTAATGCATGG 59.739 38.462 0.00 0.00 0.00 3.66
212 213 5.885912 ACCTCTCGTATTTTTAATGCATGGT 59.114 36.000 0.00 0.00 0.00 3.55
213 214 6.377146 ACCTCTCGTATTTTTAATGCATGGTT 59.623 34.615 0.00 0.00 0.00 3.67
214 215 7.554835 ACCTCTCGTATTTTTAATGCATGGTTA 59.445 33.333 0.00 0.00 0.00 2.85
232 233 2.203195 TGCAAAGTGGCACTCGCT 60.203 55.556 30.33 12.89 39.25 4.93
234 235 0.950555 TGCAAAGTGGCACTCGCTAG 60.951 55.000 30.33 17.30 39.25 3.42
235 236 0.951040 GCAAAGTGGCACTCGCTAGT 60.951 55.000 26.14 7.93 38.60 2.57
236 237 1.671850 GCAAAGTGGCACTCGCTAGTA 60.672 52.381 26.14 0.00 38.60 1.82
238 239 0.818296 AAGTGGCACTCGCTAGTAGG 59.182 55.000 22.31 0.00 38.60 3.18
239 240 0.323542 AGTGGCACTCGCTAGTAGGT 60.324 55.000 15.88 0.00 38.60 3.08
242 243 0.806492 GGCACTCGCTAGTAGGTTGC 60.806 60.000 0.00 3.69 38.60 4.17
246 247 4.088421 CGCTAGTAGGTTGCGGTG 57.912 61.111 0.00 0.00 45.07 4.94
247 248 1.518572 CGCTAGTAGGTTGCGGTGG 60.519 63.158 0.00 0.00 45.07 4.61
248 249 1.814169 GCTAGTAGGTTGCGGTGGC 60.814 63.158 0.00 0.00 40.52 5.01
287 288 7.669089 TTTTTAAATGAAAGTGAGGAGGGTT 57.331 32.000 0.00 0.00 0.00 4.11
288 289 7.669089 TTTTAAATGAAAGTGAGGAGGGTTT 57.331 32.000 0.00 0.00 0.00 3.27
290 291 8.770010 TTTAAATGAAAGTGAGGAGGGTTTTA 57.230 30.769 0.00 0.00 0.00 1.52
292 293 7.855784 AAATGAAAGTGAGGAGGGTTTTATT 57.144 32.000 0.00 0.00 0.00 1.40
294 295 7.855784 ATGAAAGTGAGGAGGGTTTTATTTT 57.144 32.000 0.00 0.00 0.00 1.82
295 296 7.049799 TGAAAGTGAGGAGGGTTTTATTTTG 57.950 36.000 0.00 0.00 0.00 2.44
298 299 6.200878 AGTGAGGAGGGTTTTATTTTGAGA 57.799 37.500 0.00 0.00 0.00 3.27
299 300 6.794534 AGTGAGGAGGGTTTTATTTTGAGAT 58.205 36.000 0.00 0.00 0.00 2.75
301 302 7.730332 AGTGAGGAGGGTTTTATTTTGAGATTT 59.270 33.333 0.00 0.00 0.00 2.17
302 303 8.367911 GTGAGGAGGGTTTTATTTTGAGATTTT 58.632 33.333 0.00 0.00 0.00 1.82
303 304 8.933653 TGAGGAGGGTTTTATTTTGAGATTTTT 58.066 29.630 0.00 0.00 0.00 1.94
322 323 4.503714 TTTTGAGACAAAGGTGAGGACT 57.496 40.909 0.00 0.00 0.00 3.85
323 324 3.753294 TTGAGACAAAGGTGAGGACTC 57.247 47.619 0.00 0.00 0.00 3.36
325 326 2.894126 TGAGACAAAGGTGAGGACTCTC 59.106 50.000 0.56 0.00 40.36 3.20
326 327 3.161866 GAGACAAAGGTGAGGACTCTCT 58.838 50.000 0.56 0.00 40.58 3.10
329 330 6.080969 AGACAAAGGTGAGGACTCTCTATA 57.919 41.667 0.56 0.00 40.58 1.31
330 331 6.678547 AGACAAAGGTGAGGACTCTCTATAT 58.321 40.000 0.56 0.00 40.58 0.86
332 333 7.621683 AGACAAAGGTGAGGACTCTCTATATTT 59.378 37.037 0.56 0.00 40.58 1.40
333 334 8.152023 ACAAAGGTGAGGACTCTCTATATTTT 57.848 34.615 0.56 0.00 40.58 1.82
334 335 8.606830 ACAAAGGTGAGGACTCTCTATATTTTT 58.393 33.333 0.56 0.00 40.58 1.94
365 366 7.208225 GAAAATATGGGCATAGTTTCCTCTC 57.792 40.000 4.42 0.00 45.30 3.20
367 368 5.912149 ATATGGGCATAGTTTCCTCTCAA 57.088 39.130 0.00 0.00 0.00 3.02
368 369 3.634397 TGGGCATAGTTTCCTCTCAAG 57.366 47.619 0.00 0.00 0.00 3.02
370 371 3.198635 TGGGCATAGTTTCCTCTCAAGAG 59.801 47.826 0.00 0.00 41.71 2.85
379 380 3.584586 CTCTCAAGAGGCGCCATAG 57.415 57.895 31.54 17.31 38.48 2.23
380 381 0.033228 CTCTCAAGAGGCGCCATAGG 59.967 60.000 31.54 15.57 38.48 2.57
381 382 0.687757 TCTCAAGAGGCGCCATAGGT 60.688 55.000 31.54 7.13 0.00 3.08
382 383 0.531532 CTCAAGAGGCGCCATAGGTG 60.532 60.000 31.54 18.31 36.10 4.00
391 392 4.122149 CCATAGGTGGCGCCCCAA 62.122 66.667 28.68 12.59 44.33 4.12
398 399 3.571216 TGGCGCCCCAACCACTAA 61.571 61.111 26.77 0.00 38.46 2.24
400 401 2.414785 GGCGCCCCAACCACTAATG 61.415 63.158 18.11 0.00 0.00 1.90
401 402 1.377987 GCGCCCCAACCACTAATGA 60.378 57.895 0.00 0.00 0.00 2.57
402 403 0.751643 GCGCCCCAACCACTAATGAT 60.752 55.000 0.00 0.00 0.00 2.45
405 406 3.486383 CGCCCCAACCACTAATGATTAT 58.514 45.455 0.00 0.00 0.00 1.28
407 408 4.261572 CGCCCCAACCACTAATGATTATTG 60.262 45.833 0.00 0.00 0.00 1.90
410 411 6.682861 GCCCCAACCACTAATGATTATTGTTC 60.683 42.308 2.53 0.00 0.00 3.18
412 413 7.201821 CCCCAACCACTAATGATTATTGTTCTC 60.202 40.741 2.53 0.00 0.00 2.87
413 414 7.409697 CCAACCACTAATGATTATTGTTCTCG 58.590 38.462 2.53 0.00 0.00 4.04
415 416 8.664798 CAACCACTAATGATTATTGTTCTCGAA 58.335 33.333 2.53 0.00 0.00 3.71
416 417 8.786826 ACCACTAATGATTATTGTTCTCGAAA 57.213 30.769 2.53 0.00 0.00 3.46
417 418 9.226606 ACCACTAATGATTATTGTTCTCGAAAA 57.773 29.630 2.53 0.00 0.00 2.29
423 424 9.573133 AATGATTATTGTTCTCGAAAATCAACC 57.427 29.630 7.95 0.00 37.03 3.77
424 425 8.335532 TGATTATTGTTCTCGAAAATCAACCT 57.664 30.769 0.00 0.00 32.14 3.50
425 426 8.236586 TGATTATTGTTCTCGAAAATCAACCTG 58.763 33.333 0.00 0.00 32.14 4.00
427 428 4.811555 TGTTCTCGAAAATCAACCTGTG 57.188 40.909 0.00 0.00 0.00 3.66
428 429 3.563808 TGTTCTCGAAAATCAACCTGTGG 59.436 43.478 0.00 0.00 0.00 4.17
439 440 2.525105 AACCTGTGGTTGAGTTGGTT 57.475 45.000 0.71 0.00 45.07 3.67
440 441 3.655615 AACCTGTGGTTGAGTTGGTTA 57.344 42.857 0.71 0.00 45.07 2.85
441 442 3.208747 ACCTGTGGTTGAGTTGGTTAG 57.791 47.619 0.00 0.00 27.29 2.34
442 443 2.158667 ACCTGTGGTTGAGTTGGTTAGG 60.159 50.000 0.00 0.00 27.29 2.69
443 444 2.158667 CCTGTGGTTGAGTTGGTTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
446 447 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
447 448 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
448 449 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
449 450 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
450 451 1.071699 TGAGTTGGTTAGGTGGACAGC 59.928 52.381 0.00 0.00 0.00 4.40
451 452 0.034896 AGTTGGTTAGGTGGACAGCG 59.965 55.000 0.00 0.00 0.00 5.18
452 453 0.953960 GTTGGTTAGGTGGACAGCGG 60.954 60.000 0.00 0.00 0.00 5.52
453 454 1.412453 TTGGTTAGGTGGACAGCGGT 61.412 55.000 0.00 0.00 0.00 5.68
454 455 0.542467 TGGTTAGGTGGACAGCGGTA 60.542 55.000 0.00 0.00 0.00 4.02
455 456 0.828677 GGTTAGGTGGACAGCGGTAT 59.171 55.000 0.00 0.00 0.00 2.73
456 457 1.202498 GGTTAGGTGGACAGCGGTATC 60.202 57.143 0.00 0.00 0.00 2.24
460 461 2.039787 TGGACAGCGGTATCCCCA 59.960 61.111 9.87 0.95 33.69 4.96
461 462 1.613928 TGGACAGCGGTATCCCCAA 60.614 57.895 9.87 0.00 33.69 4.12
462 463 1.153229 GGACAGCGGTATCCCCAAC 60.153 63.158 0.00 0.00 0.00 3.77
463 464 1.153229 GACAGCGGTATCCCCAACC 60.153 63.158 0.00 0.00 0.00 3.77
465 466 2.285818 AGCGGTATCCCCAACCCA 60.286 61.111 0.00 0.00 33.10 4.51
466 467 2.124445 GCGGTATCCCCAACCCAC 60.124 66.667 0.00 0.00 33.10 4.61
467 468 2.593420 CGGTATCCCCAACCCACC 59.407 66.667 0.00 0.00 33.10 4.61
470 471 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
483 484 1.895131 CCACCAGGGTTCAAATCTTGG 59.105 52.381 2.81 2.81 0.00 3.61
484 485 2.597455 CACCAGGGTTCAAATCTTGGT 58.403 47.619 4.09 4.09 0.00 3.67
486 487 1.273327 CCAGGGTTCAAATCTTGGTGC 59.727 52.381 0.00 0.00 0.00 5.01
487 488 2.242043 CAGGGTTCAAATCTTGGTGCT 58.758 47.619 0.00 0.00 0.00 4.40
488 489 2.229784 CAGGGTTCAAATCTTGGTGCTC 59.770 50.000 0.00 0.00 0.00 4.26
490 491 1.401539 GGTTCAAATCTTGGTGCTCGC 60.402 52.381 0.00 0.00 0.00 5.03
492 493 1.825090 TCAAATCTTGGTGCTCGCAT 58.175 45.000 0.00 0.00 0.00 4.73
493 494 2.161855 TCAAATCTTGGTGCTCGCATT 58.838 42.857 0.00 0.00 0.00 3.56
495 496 3.947196 TCAAATCTTGGTGCTCGCATTAT 59.053 39.130 0.00 0.00 0.00 1.28
496 497 4.398988 TCAAATCTTGGTGCTCGCATTATT 59.601 37.500 0.00 0.00 0.00 1.40
497 498 4.558538 AATCTTGGTGCTCGCATTATTC 57.441 40.909 0.00 0.00 0.00 1.75
498 499 2.288666 TCTTGGTGCTCGCATTATTCC 58.711 47.619 0.00 0.00 0.00 3.01
499 500 2.092968 TCTTGGTGCTCGCATTATTCCT 60.093 45.455 0.00 0.00 0.00 3.36
500 501 1.667236 TGGTGCTCGCATTATTCCTG 58.333 50.000 0.00 0.00 0.00 3.86
505 506 4.202050 GGTGCTCGCATTATTCCTGAATTT 60.202 41.667 0.00 0.00 32.50 1.82
506 507 5.008613 GGTGCTCGCATTATTCCTGAATTTA 59.991 40.000 0.00 0.00 32.50 1.40
507 508 6.294176 GGTGCTCGCATTATTCCTGAATTTAT 60.294 38.462 0.00 0.00 32.50 1.40
508 509 7.141363 GTGCTCGCATTATTCCTGAATTTATT 58.859 34.615 0.00 0.00 32.50 1.40
509 510 7.649306 GTGCTCGCATTATTCCTGAATTTATTT 59.351 33.333 0.00 0.00 32.50 1.40
510 511 8.196771 TGCTCGCATTATTCCTGAATTTATTTT 58.803 29.630 0.00 0.00 32.50 1.82
522 523 8.695456 TCCTGAATTTATTTTAGGATTTCCAGC 58.305 33.333 0.00 0.00 38.89 4.85
523 524 7.649306 CCTGAATTTATTTTAGGATTTCCAGCG 59.351 37.037 0.00 0.00 38.89 5.18
524 525 8.287439 TGAATTTATTTTAGGATTTCCAGCGA 57.713 30.769 0.00 0.00 38.89 4.93
525 526 8.912988 TGAATTTATTTTAGGATTTCCAGCGAT 58.087 29.630 0.00 0.00 38.89 4.58
526 527 9.185192 GAATTTATTTTAGGATTTCCAGCGATG 57.815 33.333 0.00 0.00 38.89 3.84
527 528 4.574599 ATTTTAGGATTTCCAGCGATGC 57.425 40.909 0.00 0.00 38.89 3.91
528 529 1.581934 TTAGGATTTCCAGCGATGCG 58.418 50.000 0.00 0.00 38.89 4.73
539 540 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
541 542 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
542 543 0.391661 GATGCGCTTTCAGTGGGAGA 60.392 55.000 9.73 0.00 0.00 3.71
543 544 0.392193 ATGCGCTTTCAGTGGGAGAG 60.392 55.000 9.73 0.00 0.00 3.20
544 545 1.293498 GCGCTTTCAGTGGGAGAGA 59.707 57.895 0.00 0.00 29.28 3.10
546 547 0.734253 CGCTTTCAGTGGGAGAGACG 60.734 60.000 0.00 0.00 29.28 4.18
547 548 0.318762 GCTTTCAGTGGGAGAGACGT 59.681 55.000 0.00 0.00 29.28 4.34
549 550 2.678324 CTTTCAGTGGGAGAGACGTTC 58.322 52.381 0.00 0.00 29.28 3.95
550 551 0.966920 TTCAGTGGGAGAGACGTTCC 59.033 55.000 0.00 0.00 0.00 3.62
576 577 2.359107 ACGAGGCGTCTACGGTGA 60.359 61.111 12.25 0.00 33.69 4.02
577 578 2.099831 CGAGGCGTCTACGGTGAC 59.900 66.667 4.69 0.00 40.23 3.67
578 579 2.396955 CGAGGCGTCTACGGTGACT 61.397 63.158 4.69 0.00 40.23 3.41
579 580 1.881602 GAGGCGTCTACGGTGACTT 59.118 57.895 4.49 0.00 40.23 3.01
580 581 0.179169 GAGGCGTCTACGGTGACTTC 60.179 60.000 4.49 0.00 40.23 3.01
581 582 1.513586 GGCGTCTACGGTGACTTCG 60.514 63.158 4.49 0.00 40.23 3.79
582 583 1.208614 GCGTCTACGGTGACTTCGT 59.791 57.895 4.49 0.00 43.64 3.85
584 585 1.135972 GCGTCTACGGTGACTTCGTAA 60.136 52.381 4.49 0.00 41.62 3.18
585 586 2.665519 GCGTCTACGGTGACTTCGTAAA 60.666 50.000 4.49 0.00 41.62 2.01
586 587 3.751621 CGTCTACGGTGACTTCGTAAAT 58.248 45.455 8.11 0.00 41.62 1.40
587 588 4.161333 CGTCTACGGTGACTTCGTAAATT 58.839 43.478 8.11 0.00 41.62 1.82
588 589 4.618489 CGTCTACGGTGACTTCGTAAATTT 59.382 41.667 0.00 0.00 41.62 1.82
589 590 5.219914 CGTCTACGGTGACTTCGTAAATTTC 60.220 44.000 0.00 0.00 41.62 2.17
590 591 5.630680 GTCTACGGTGACTTCGTAAATTTCA 59.369 40.000 0.00 0.00 41.62 2.69
591 592 6.144402 GTCTACGGTGACTTCGTAAATTTCAA 59.856 38.462 0.00 0.00 41.62 2.69
592 593 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
594 595 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
595 596 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
596 597 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
597 598 7.413000 CGGTGACTTCGTAAATTTCAAGATGAT 60.413 37.037 0.00 0.00 0.00 2.45
598 599 8.879759 GGTGACTTCGTAAATTTCAAGATGATA 58.120 33.333 0.00 0.00 0.00 2.15
602 603 8.345565 ACTTCGTAAATTTCAAGATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
603 604 6.887368 TCGTAAATTTCAAGATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
604 605 6.073276 TCGTAAATTTCAAGATGATATGCCGG 60.073 38.462 0.00 0.00 0.00 6.13
605 606 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
606 607 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
607 608 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
609 610 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
610 611 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
611 612 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
612 613 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
614 615 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
615 616 1.342819 GATATGCCGGCTCAGTCTCTT 59.657 52.381 29.70 1.60 0.00 2.85
618 619 2.650116 GCCGGCTCAGTCTCTTGGA 61.650 63.158 22.15 0.00 0.00 3.53
621 622 1.254284 CGGCTCAGTCTCTTGGAGGT 61.254 60.000 0.00 0.00 0.00 3.85
622 623 0.248843 GGCTCAGTCTCTTGGAGGTG 59.751 60.000 0.00 0.00 0.00 4.00
623 624 0.390998 GCTCAGTCTCTTGGAGGTGC 60.391 60.000 0.00 0.00 0.00 5.01
624 625 1.265236 CTCAGTCTCTTGGAGGTGCT 58.735 55.000 0.00 0.00 0.00 4.40
626 627 0.972134 CAGTCTCTTGGAGGTGCTCA 59.028 55.000 0.00 0.00 31.08 4.26
627 628 1.554160 CAGTCTCTTGGAGGTGCTCAT 59.446 52.381 0.00 0.00 31.08 2.90
630 631 2.102252 GTCTCTTGGAGGTGCTCATAGG 59.898 54.545 0.00 0.00 31.08 2.57
631 632 1.415659 CTCTTGGAGGTGCTCATAGGG 59.584 57.143 0.00 0.00 31.08 3.53
632 633 1.008327 TCTTGGAGGTGCTCATAGGGA 59.992 52.381 0.00 0.00 31.08 4.20
634 635 1.427809 TGGAGGTGCTCATAGGGATG 58.572 55.000 0.00 0.00 31.08 3.51
635 636 1.062198 TGGAGGTGCTCATAGGGATGA 60.062 52.381 0.00 0.00 39.88 2.92
644 645 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
647 648 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
648 649 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
649 650 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
650 651 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
651 652 2.394708 GATGAGTGTATGCGCGTGTAT 58.605 47.619 13.61 4.63 0.00 2.29
654 655 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
655 656 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
656 657 3.972403 AGTGTATGCGCGTGTATATGAA 58.028 40.909 13.61 0.00 0.00 2.57
657 658 3.734231 AGTGTATGCGCGTGTATATGAAC 59.266 43.478 13.61 9.06 0.00 3.18
658 659 2.722116 TGTATGCGCGTGTATATGAACG 59.278 45.455 13.61 7.44 42.61 3.95
666 667 4.164802 CGTGTATATGAACGCTTGTGTC 57.835 45.455 0.00 0.00 32.40 3.67
667 668 3.857665 CGTGTATATGAACGCTTGTGTCT 59.142 43.478 0.00 0.00 32.40 3.41
669 670 4.625742 GTGTATATGAACGCTTGTGTCTGT 59.374 41.667 0.00 0.00 0.00 3.41
671 672 5.803461 TGTATATGAACGCTTGTGTCTGTAC 59.197 40.000 0.00 0.00 0.00 2.90
672 673 2.882927 TGAACGCTTGTGTCTGTACT 57.117 45.000 0.00 0.00 0.00 2.73
673 674 3.994204 TGAACGCTTGTGTCTGTACTA 57.006 42.857 0.00 0.00 0.00 1.82
676 677 4.684242 TGAACGCTTGTGTCTGTACTAATG 59.316 41.667 0.00 0.00 0.00 1.90
677 678 2.993899 ACGCTTGTGTCTGTACTAATGC 59.006 45.455 0.00 0.00 0.00 3.56
678 679 3.254060 CGCTTGTGTCTGTACTAATGCT 58.746 45.455 0.00 0.00 0.00 3.79
679 680 4.082408 ACGCTTGTGTCTGTACTAATGCTA 60.082 41.667 0.00 0.00 0.00 3.49
680 681 4.862574 CGCTTGTGTCTGTACTAATGCTAA 59.137 41.667 0.00 0.00 0.00 3.09
681 682 5.347635 CGCTTGTGTCTGTACTAATGCTAAA 59.652 40.000 0.00 0.00 0.00 1.85
682 683 6.128661 CGCTTGTGTCTGTACTAATGCTAAAA 60.129 38.462 0.00 0.00 0.00 1.52
683 684 7.570507 CGCTTGTGTCTGTACTAATGCTAAAAA 60.571 37.037 0.00 0.00 0.00 1.94
720 721 5.420258 GCACATGCAACGTTTACTAATTG 57.580 39.130 0.00 0.00 41.59 2.32
721 722 4.915085 GCACATGCAACGTTTACTAATTGT 59.085 37.500 0.00 0.00 41.59 2.71
722 723 5.164196 GCACATGCAACGTTTACTAATTGTG 60.164 40.000 0.00 7.38 41.59 3.33
723 724 6.139435 CACATGCAACGTTTACTAATTGTGA 58.861 36.000 0.00 0.00 34.22 3.58
725 726 7.325821 CACATGCAACGTTTACTAATTGTGAAT 59.674 33.333 0.00 0.00 34.22 2.57
726 727 8.508062 ACATGCAACGTTTACTAATTGTGAATA 58.492 29.630 0.00 0.00 0.00 1.75
727 728 9.335891 CATGCAACGTTTACTAATTGTGAATAA 57.664 29.630 0.00 0.00 0.00 1.40
728 729 8.716619 TGCAACGTTTACTAATTGTGAATAAC 57.283 30.769 0.00 0.00 0.00 1.89
729 730 8.343366 TGCAACGTTTACTAATTGTGAATAACA 58.657 29.630 0.00 0.00 36.85 2.41
730 731 9.337091 GCAACGTTTACTAATTGTGAATAACAT 57.663 29.630 0.00 0.00 38.99 2.71
734 735 9.498307 CGTTTACTAATTGTGAATAACATTCCC 57.502 33.333 0.00 0.00 38.99 3.97
741 742 3.513515 TGTGAATAACATTCCCTTTGGCC 59.486 43.478 0.00 0.00 32.36 5.36
742 743 3.103742 TGAATAACATTCCCTTTGGCCC 58.896 45.455 0.00 0.00 0.00 5.80
743 744 3.245948 TGAATAACATTCCCTTTGGCCCT 60.246 43.478 0.00 0.00 0.00 5.19
744 745 4.017037 TGAATAACATTCCCTTTGGCCCTA 60.017 41.667 0.00 0.00 0.00 3.53
745 746 4.618378 ATAACATTCCCTTTGGCCCTAA 57.382 40.909 0.00 0.00 0.00 2.69
746 747 3.268034 AACATTCCCTTTGGCCCTAAA 57.732 42.857 0.00 0.00 0.00 1.85
748 749 3.592865 ACATTCCCTTTGGCCCTAAAAA 58.407 40.909 0.00 0.00 0.00 1.94
767 768 4.900635 AAAAATCTCTGTGTGCGTCTTT 57.099 36.364 0.00 0.00 0.00 2.52
768 769 4.900635 AAAATCTCTGTGTGCGTCTTTT 57.099 36.364 0.00 0.00 0.00 2.27
769 770 4.900635 AAATCTCTGTGTGCGTCTTTTT 57.099 36.364 0.00 0.00 0.00 1.94
770 771 4.474226 AATCTCTGTGTGCGTCTTTTTC 57.526 40.909 0.00 0.00 0.00 2.29
771 772 2.899976 TCTCTGTGTGCGTCTTTTTCA 58.100 42.857 0.00 0.00 0.00 2.69
773 774 2.351418 CTCTGTGTGCGTCTTTTTCACA 59.649 45.455 0.00 0.00 38.27 3.58
774 775 2.744741 TCTGTGTGCGTCTTTTTCACAA 59.255 40.909 0.00 0.00 41.66 3.33
775 776 2.845967 CTGTGTGCGTCTTTTTCACAAC 59.154 45.455 0.00 0.00 41.66 3.32
776 777 1.837747 GTGTGCGTCTTTTTCACAACG 59.162 47.619 0.00 0.00 41.66 4.10
777 778 1.732809 TGTGCGTCTTTTTCACAACGA 59.267 42.857 0.00 0.00 37.73 3.85
778 779 2.159824 TGTGCGTCTTTTTCACAACGAA 59.840 40.909 0.00 0.00 37.73 3.85
779 780 3.165124 GTGCGTCTTTTTCACAACGAAA 58.835 40.909 0.00 0.00 41.95 3.46
790 791 7.912949 TTTTCACAACGAAAATCTCTCAATG 57.087 32.000 0.00 0.00 46.33 2.82
791 792 5.034554 TCACAACGAAAATCTCTCAATGC 57.965 39.130 0.00 0.00 0.00 3.56
793 794 4.074970 ACAACGAAAATCTCTCAATGCCT 58.925 39.130 0.00 0.00 0.00 4.75
794 795 4.520492 ACAACGAAAATCTCTCAATGCCTT 59.480 37.500 0.00 0.00 0.00 4.35
795 796 5.705441 ACAACGAAAATCTCTCAATGCCTTA 59.295 36.000 0.00 0.00 0.00 2.69
796 797 6.375455 ACAACGAAAATCTCTCAATGCCTTAT 59.625 34.615 0.00 0.00 0.00 1.73
797 798 6.610741 ACGAAAATCTCTCAATGCCTTATC 57.389 37.500 0.00 0.00 0.00 1.75
799 800 5.762218 CGAAAATCTCTCAATGCCTTATCCT 59.238 40.000 0.00 0.00 0.00 3.24
800 801 6.931281 CGAAAATCTCTCAATGCCTTATCCTA 59.069 38.462 0.00 0.00 0.00 2.94
801 802 7.117523 CGAAAATCTCTCAATGCCTTATCCTAG 59.882 40.741 0.00 0.00 0.00 3.02
802 803 7.623999 AAATCTCTCAATGCCTTATCCTAGA 57.376 36.000 0.00 0.00 0.00 2.43
803 804 7.623999 AATCTCTCAATGCCTTATCCTAGAA 57.376 36.000 0.00 0.00 0.00 2.10
804 805 7.623999 ATCTCTCAATGCCTTATCCTAGAAA 57.376 36.000 0.00 0.00 0.00 2.52
805 806 7.437713 TCTCTCAATGCCTTATCCTAGAAAA 57.562 36.000 0.00 0.00 0.00 2.29
806 807 7.861629 TCTCTCAATGCCTTATCCTAGAAAAA 58.138 34.615 0.00 0.00 0.00 1.94
807 808 8.497745 TCTCTCAATGCCTTATCCTAGAAAAAT 58.502 33.333 0.00 0.00 0.00 1.82
808 809 9.784531 CTCTCAATGCCTTATCCTAGAAAAATA 57.215 33.333 0.00 0.00 0.00 1.40
838 839 9.651913 CTCTCTCCTAAAATAAATATCTCTGCC 57.348 37.037 0.00 0.00 0.00 4.85
866 867 0.615544 AATGACATGTGGGGCCCAAG 60.616 55.000 30.70 22.37 34.18 3.61
867 868 3.070576 GACATGTGGGGCCCAAGC 61.071 66.667 30.70 17.37 34.18 4.01
869 870 4.738998 CATGTGGGGCCCAAGCGA 62.739 66.667 30.70 12.34 41.24 4.93
870 871 4.740822 ATGTGGGGCCCAAGCGAC 62.741 66.667 30.70 15.66 41.24 5.19
889 3587 1.405821 ACCGCATCGAACCTCTAGAAG 59.594 52.381 0.00 0.00 0.00 2.85
1017 3724 2.444706 CCCTCCTCCTCGCCATCA 60.445 66.667 0.00 0.00 0.00 3.07
1066 3802 0.958822 AACAAGCAATCCAACCCGAC 59.041 50.000 0.00 0.00 0.00 4.79
1147 3896 3.032609 CCGATGATGACGGCGCTC 61.033 66.667 6.90 4.53 43.74 5.03
1999 4983 4.166144 GGGGAGAAAAATCCTGGATGTCTA 59.834 45.833 10.54 0.00 39.50 2.59
2330 5413 1.277842 TCGGGTGTGAGCACATATGTT 59.722 47.619 5.37 0.00 46.95 2.71
2435 5537 5.505780 TGTCCCATCAACTTCGGAAAATAT 58.494 37.500 0.00 0.00 0.00 1.28
2577 7126 4.178545 ACAACAGAGTATGGCATTTTGC 57.821 40.909 4.78 0.00 44.08 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.288948 GCTCTCATGAGGCATGACTAGG 60.289 54.545 22.42 0.00 44.60 3.02
15 16 2.629137 AGCTCTCATGAGGCATGACTAG 59.371 50.000 27.31 15.73 44.60 2.57
16 17 2.627221 GAGCTCTCATGAGGCATGACTA 59.373 50.000 27.31 7.42 44.60 2.59
17 18 1.413445 GAGCTCTCATGAGGCATGACT 59.587 52.381 27.31 0.00 44.60 3.41
18 19 1.540797 GGAGCTCTCATGAGGCATGAC 60.541 57.143 27.31 18.29 44.60 3.06
19 20 0.757512 GGAGCTCTCATGAGGCATGA 59.242 55.000 27.31 9.49 46.84 3.07
20 21 0.250381 GGGAGCTCTCATGAGGCATG 60.250 60.000 27.31 15.90 42.60 4.06
22 23 2.068821 GGGGAGCTCTCATGAGGCA 61.069 63.158 27.31 10.51 40.53 4.75
23 24 1.757423 GAGGGGAGCTCTCATGAGGC 61.757 65.000 22.42 22.00 40.53 4.70
24 25 0.398239 TGAGGGGAGCTCTCATGAGG 60.398 60.000 22.42 13.87 40.53 3.86
25 26 1.719529 ATGAGGGGAGCTCTCATGAG 58.280 55.000 17.22 17.07 46.56 2.90
26 27 3.963793 ATGAGGGGAGCTCTCATGA 57.036 52.632 17.22 1.73 46.56 3.07
29 30 2.119495 GGTTAATGAGGGGAGCTCTCA 58.881 52.381 17.22 11.34 44.19 3.27
30 31 1.418264 GGGTTAATGAGGGGAGCTCTC 59.582 57.143 14.64 10.01 0.00 3.20
32 33 1.512735 AGGGTTAATGAGGGGAGCTC 58.487 55.000 4.71 4.71 0.00 4.09
33 34 2.889522 TAGGGTTAATGAGGGGAGCT 57.110 50.000 0.00 0.00 0.00 4.09
34 35 5.561679 CTTAATAGGGTTAATGAGGGGAGC 58.438 45.833 0.00 0.00 0.00 4.70
36 37 5.232347 AGCTTAATAGGGTTAATGAGGGGA 58.768 41.667 0.00 0.00 0.00 4.81
37 38 5.584551 AGCTTAATAGGGTTAATGAGGGG 57.415 43.478 0.00 0.00 0.00 4.79
38 39 6.164176 CGTAGCTTAATAGGGTTAATGAGGG 58.836 44.000 0.00 0.00 0.00 4.30
62 63 2.750888 GGTTGATCGCCCTTCACGC 61.751 63.158 0.00 0.00 0.00 5.34
63 64 1.361668 CTGGTTGATCGCCCTTCACG 61.362 60.000 4.01 0.00 0.00 4.35
64 65 1.648467 GCTGGTTGATCGCCCTTCAC 61.648 60.000 4.01 0.00 0.00 3.18
66 67 0.178068 TAGCTGGTTGATCGCCCTTC 59.822 55.000 0.00 0.00 0.00 3.46
67 68 0.839946 ATAGCTGGTTGATCGCCCTT 59.160 50.000 0.00 0.00 0.00 3.95
68 69 0.107456 CATAGCTGGTTGATCGCCCT 59.893 55.000 0.00 0.00 0.00 5.19
70 71 1.510480 GGCATAGCTGGTTGATCGCC 61.510 60.000 0.00 0.00 0.00 5.54
71 72 0.815213 TGGCATAGCTGGTTGATCGC 60.815 55.000 0.00 0.00 0.00 4.58
72 73 1.534163 CATGGCATAGCTGGTTGATCG 59.466 52.381 0.00 0.00 0.00 3.69
73 74 2.292569 CACATGGCATAGCTGGTTGATC 59.707 50.000 0.00 0.00 0.00 2.92
74 75 2.304092 CACATGGCATAGCTGGTTGAT 58.696 47.619 0.00 0.00 0.00 2.57
75 76 1.682702 CCACATGGCATAGCTGGTTGA 60.683 52.381 0.00 0.00 0.00 3.18
77 78 0.332632 ACCACATGGCATAGCTGGTT 59.667 50.000 14.78 3.78 39.32 3.67
78 79 0.394762 CACCACATGGCATAGCTGGT 60.395 55.000 14.78 14.78 39.32 4.00
79 80 1.731433 GCACCACATGGCATAGCTGG 61.731 60.000 13.74 13.74 39.32 4.85
80 81 1.033202 TGCACCACATGGCATAGCTG 61.033 55.000 0.00 0.00 39.32 4.24
81 82 0.323633 TTGCACCACATGGCATAGCT 60.324 50.000 0.00 0.00 40.17 3.32
83 84 1.820519 AGTTTGCACCACATGGCATAG 59.179 47.619 0.00 0.00 40.17 2.23
84 85 1.545136 CAGTTTGCACCACATGGCATA 59.455 47.619 0.00 0.00 40.17 3.14
86 87 1.740905 CAGTTTGCACCACATGGCA 59.259 52.632 0.00 0.00 39.32 4.92
87 88 1.005867 CCAGTTTGCACCACATGGC 60.006 57.895 0.00 0.00 39.32 4.40
88 89 1.005867 GCCAGTTTGCACCACATGG 60.006 57.895 0.00 0.00 42.17 3.66
89 90 0.319211 CAGCCAGTTTGCACCACATG 60.319 55.000 0.00 0.00 0.00 3.21
90 91 1.466025 CCAGCCAGTTTGCACCACAT 61.466 55.000 0.00 0.00 0.00 3.21
91 92 2.126596 CCAGCCAGTTTGCACCACA 61.127 57.895 0.00 0.00 0.00 4.17
92 93 2.730094 CCAGCCAGTTTGCACCAC 59.270 61.111 0.00 0.00 0.00 4.16
93 94 3.225798 GCCAGCCAGTTTGCACCA 61.226 61.111 0.00 0.00 0.00 4.17
94 95 3.994853 GGCCAGCCAGTTTGCACC 61.995 66.667 3.12 0.00 35.81 5.01
95 96 3.225798 TGGCCAGCCAGTTTGCAC 61.226 61.111 7.43 0.00 41.89 4.57
104 105 3.842925 TTTCTCACCGTGGCCAGCC 62.843 63.158 5.11 0.38 0.00 4.85
105 106 1.648467 GATTTCTCACCGTGGCCAGC 61.648 60.000 5.11 0.00 0.00 4.85
106 107 0.036010 AGATTTCTCACCGTGGCCAG 60.036 55.000 5.11 0.00 0.00 4.85
107 108 0.400213 AAGATTTCTCACCGTGGCCA 59.600 50.000 0.00 0.00 0.00 5.36
108 109 1.534729 AAAGATTTCTCACCGTGGCC 58.465 50.000 0.00 0.00 0.00 5.36
109 110 4.000988 TCTAAAAGATTTCTCACCGTGGC 58.999 43.478 0.00 0.00 0.00 5.01
110 111 6.743575 ATTCTAAAAGATTTCTCACCGTGG 57.256 37.500 0.00 0.00 0.00 4.94
111 112 9.463443 AAAAATTCTAAAAGATTTCTCACCGTG 57.537 29.630 0.00 0.00 0.00 4.94
113 114 9.463443 ACAAAAATTCTAAAAGATTTCTCACCG 57.537 29.630 0.00 0.00 0.00 4.94
124 125 9.463443 CCACACCTTCTACAAAAATTCTAAAAG 57.537 33.333 0.00 0.00 0.00 2.27
125 126 9.191479 TCCACACCTTCTACAAAAATTCTAAAA 57.809 29.630 0.00 0.00 0.00 1.52
127 128 8.934023 ATCCACACCTTCTACAAAAATTCTAA 57.066 30.769 0.00 0.00 0.00 2.10
129 130 7.839680 AATCCACACCTTCTACAAAAATTCT 57.160 32.000 0.00 0.00 0.00 2.40
181 182 7.676572 GCATTAAAAATACGAGAGGTCTTCACC 60.677 40.741 0.00 0.00 44.19 4.02
182 183 7.148474 TGCATTAAAAATACGAGAGGTCTTCAC 60.148 37.037 0.00 0.00 0.00 3.18
183 184 6.876789 TGCATTAAAAATACGAGAGGTCTTCA 59.123 34.615 0.00 0.00 0.00 3.02
184 185 7.303634 TGCATTAAAAATACGAGAGGTCTTC 57.696 36.000 0.00 0.00 0.00 2.87
186 187 6.260936 CCATGCATTAAAAATACGAGAGGTCT 59.739 38.462 0.00 0.00 0.00 3.85
187 188 6.038271 ACCATGCATTAAAAATACGAGAGGTC 59.962 38.462 0.00 0.00 0.00 3.85
188 189 5.885912 ACCATGCATTAAAAATACGAGAGGT 59.114 36.000 0.00 0.00 0.00 3.85
189 190 6.377327 ACCATGCATTAAAAATACGAGAGG 57.623 37.500 0.00 0.00 0.00 3.69
190 191 9.385902 CATAACCATGCATTAAAAATACGAGAG 57.614 33.333 0.00 0.00 0.00 3.20
207 208 2.231964 AGTGCCACTTTGCATAACCATG 59.768 45.455 0.00 0.00 44.30 3.66
209 210 1.885887 GAGTGCCACTTTGCATAACCA 59.114 47.619 0.00 0.00 44.30 3.67
210 211 1.135689 CGAGTGCCACTTTGCATAACC 60.136 52.381 0.00 0.00 44.30 2.85
211 212 1.729149 GCGAGTGCCACTTTGCATAAC 60.729 52.381 15.52 0.00 44.30 1.89
212 213 0.521291 GCGAGTGCCACTTTGCATAA 59.479 50.000 15.52 0.00 44.30 1.90
213 214 0.321564 AGCGAGTGCCACTTTGCATA 60.322 50.000 20.52 0.00 44.30 3.14
214 215 0.321564 TAGCGAGTGCCACTTTGCAT 60.322 50.000 20.52 10.96 44.30 3.96
217 218 2.263077 CTACTAGCGAGTGCCACTTTG 58.737 52.381 10.02 0.00 44.31 2.77
218 219 1.204941 CCTACTAGCGAGTGCCACTTT 59.795 52.381 10.02 0.00 44.31 2.66
219 220 0.818296 CCTACTAGCGAGTGCCACTT 59.182 55.000 10.02 0.00 44.31 3.16
221 222 0.531200 AACCTACTAGCGAGTGCCAC 59.469 55.000 10.02 0.00 44.31 5.01
222 223 0.530744 CAACCTACTAGCGAGTGCCA 59.469 55.000 10.02 0.00 44.31 4.92
223 224 0.806492 GCAACCTACTAGCGAGTGCC 60.806 60.000 10.02 0.00 44.31 5.01
224 225 2.666989 GCAACCTACTAGCGAGTGC 58.333 57.895 10.02 0.00 43.24 4.40
230 231 1.814169 GCCACCGCAACCTACTAGC 60.814 63.158 0.00 0.00 34.03 3.42
231 232 1.594833 TGCCACCGCAACCTACTAG 59.405 57.895 0.00 0.00 43.74 2.57
232 233 3.794481 TGCCACCGCAACCTACTA 58.206 55.556 0.00 0.00 43.74 1.82
265 266 7.669089 AAAACCCTCCTCACTTTCATTTAAA 57.331 32.000 0.00 0.00 0.00 1.52
267 268 8.950007 AATAAAACCCTCCTCACTTTCATTTA 57.050 30.769 0.00 0.00 0.00 1.40
268 269 7.855784 AATAAAACCCTCCTCACTTTCATTT 57.144 32.000 0.00 0.00 0.00 2.32
271 272 6.836527 TCAAAATAAAACCCTCCTCACTTTCA 59.163 34.615 0.00 0.00 0.00 2.69
272 273 7.230712 TCTCAAAATAAAACCCTCCTCACTTTC 59.769 37.037 0.00 0.00 0.00 2.62
273 274 7.066781 TCTCAAAATAAAACCCTCCTCACTTT 58.933 34.615 0.00 0.00 0.00 2.66
274 275 6.610830 TCTCAAAATAAAACCCTCCTCACTT 58.389 36.000 0.00 0.00 0.00 3.16
275 276 6.200878 TCTCAAAATAAAACCCTCCTCACT 57.799 37.500 0.00 0.00 0.00 3.41
276 277 7.468141 AATCTCAAAATAAAACCCTCCTCAC 57.532 36.000 0.00 0.00 0.00 3.51
301 302 4.164221 AGAGTCCTCACCTTTGTCTCAAAA 59.836 41.667 0.00 0.00 0.00 2.44
302 303 3.711704 AGAGTCCTCACCTTTGTCTCAAA 59.288 43.478 0.00 0.00 0.00 2.69
303 304 3.309296 AGAGTCCTCACCTTTGTCTCAA 58.691 45.455 0.00 0.00 0.00 3.02
304 305 2.894126 GAGAGTCCTCACCTTTGTCTCA 59.106 50.000 0.00 0.00 39.24 3.27
305 306 3.161866 AGAGAGTCCTCACCTTTGTCTC 58.838 50.000 0.00 0.00 41.87 3.36
307 308 6.969993 ATATAGAGAGTCCTCACCTTTGTC 57.030 41.667 0.00 0.00 41.87 3.18
308 309 7.741554 AAATATAGAGAGTCCTCACCTTTGT 57.258 36.000 0.00 0.00 41.87 2.83
337 338 8.322905 AGGAAACTATGCCCATATTTTCATTT 57.677 30.769 21.93 11.32 41.13 2.32
339 340 7.300658 AGAGGAAACTATGCCCATATTTTCAT 58.699 34.615 21.93 18.29 44.43 2.57
340 341 6.672593 AGAGGAAACTATGCCCATATTTTCA 58.327 36.000 21.93 0.00 44.43 2.69
341 342 6.772716 TGAGAGGAAACTATGCCCATATTTTC 59.227 38.462 16.51 16.51 44.43 2.29
343 344 6.266131 TGAGAGGAAACTATGCCCATATTT 57.734 37.500 0.00 0.00 44.43 1.40
344 345 5.912149 TGAGAGGAAACTATGCCCATATT 57.088 39.130 0.00 0.00 44.43 1.28
345 346 5.608437 TCTTGAGAGGAAACTATGCCCATAT 59.392 40.000 0.00 0.00 44.43 1.78
346 347 4.968719 TCTTGAGAGGAAACTATGCCCATA 59.031 41.667 0.00 0.00 44.43 2.74
348 349 3.181329 TCTTGAGAGGAAACTATGCCCA 58.819 45.455 0.00 0.00 44.43 5.36
349 350 3.802866 CTCTTGAGAGGAAACTATGCCC 58.197 50.000 0.00 0.00 44.43 5.36
361 362 0.033228 CCTATGGCGCCTCTTGAGAG 59.967 60.000 29.70 13.34 41.71 3.20
362 363 0.687757 ACCTATGGCGCCTCTTGAGA 60.688 55.000 29.70 5.17 0.00 3.27
363 364 0.531532 CACCTATGGCGCCTCTTGAG 60.532 60.000 29.70 16.19 0.00 3.02
364 365 1.522092 CACCTATGGCGCCTCTTGA 59.478 57.895 29.70 7.00 0.00 3.02
365 366 1.524621 CCACCTATGGCGCCTCTTG 60.525 63.158 29.70 16.46 39.82 3.02
375 376 2.828549 GTTGGGGCGCCACCTATG 60.829 66.667 29.43 0.00 39.10 2.23
376 377 4.123545 GGTTGGGGCGCCACCTAT 62.124 66.667 29.43 0.00 39.10 2.57
381 382 2.913117 ATTAGTGGTTGGGGCGCCA 61.913 57.895 30.85 20.22 0.00 5.69
382 383 2.044352 ATTAGTGGTTGGGGCGCC 60.044 61.111 21.18 21.18 0.00 6.53
383 384 0.751643 ATCATTAGTGGTTGGGGCGC 60.752 55.000 0.00 0.00 0.00 6.53
384 385 1.762708 AATCATTAGTGGTTGGGGCG 58.237 50.000 0.00 0.00 0.00 6.13
386 387 6.607198 AGAACAATAATCATTAGTGGTTGGGG 59.393 38.462 9.56 0.00 35.66 4.96
387 388 7.467267 CGAGAACAATAATCATTAGTGGTTGGG 60.467 40.741 9.56 0.00 35.66 4.12
388 389 7.279981 TCGAGAACAATAATCATTAGTGGTTGG 59.720 37.037 9.56 0.00 35.66 3.77
389 390 8.196802 TCGAGAACAATAATCATTAGTGGTTG 57.803 34.615 9.56 0.00 35.66 3.77
390 391 8.786826 TTCGAGAACAATAATCATTAGTGGTT 57.213 30.769 9.56 1.97 35.66 3.67
391 392 8.786826 TTTCGAGAACAATAATCATTAGTGGT 57.213 30.769 9.56 2.18 35.66 4.16
397 398 9.573133 GGTTGATTTTCGAGAACAATAATCATT 57.427 29.630 9.90 0.00 33.52 2.57
398 399 8.960591 AGGTTGATTTTCGAGAACAATAATCAT 58.039 29.630 9.90 0.00 33.52 2.45
400 401 8.237267 ACAGGTTGATTTTCGAGAACAATAATC 58.763 33.333 0.00 0.00 0.00 1.75
401 402 8.023128 CACAGGTTGATTTTCGAGAACAATAAT 58.977 33.333 0.00 0.00 0.00 1.28
402 403 7.359595 CACAGGTTGATTTTCGAGAACAATAA 58.640 34.615 0.00 0.00 0.00 1.40
405 406 4.036262 CCACAGGTTGATTTTCGAGAACAA 59.964 41.667 0.00 0.00 0.00 2.83
407 408 3.564225 ACCACAGGTTGATTTTCGAGAAC 59.436 43.478 0.00 0.00 27.29 3.01
422 423 2.158667 ACCTAACCAACTCAACCACAGG 60.159 50.000 0.00 0.00 0.00 4.00
423 424 2.878406 CACCTAACCAACTCAACCACAG 59.122 50.000 0.00 0.00 0.00 3.66
424 425 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
425 426 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
427 428 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
428 429 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
430 431 1.071699 GCTGTCCACCTAACCAACTCA 59.928 52.381 0.00 0.00 0.00 3.41
431 432 1.809684 GCTGTCCACCTAACCAACTC 58.190 55.000 0.00 0.00 0.00 3.01
432 433 0.034896 CGCTGTCCACCTAACCAACT 59.965 55.000 0.00 0.00 0.00 3.16
433 434 0.953960 CCGCTGTCCACCTAACCAAC 60.954 60.000 0.00 0.00 0.00 3.77
436 437 0.828677 ATACCGCTGTCCACCTAACC 59.171 55.000 0.00 0.00 0.00 2.85
437 438 1.202498 GGATACCGCTGTCCACCTAAC 60.202 57.143 0.00 0.00 34.57 2.34
439 440 2.816746 GGATACCGCTGTCCACCTA 58.183 57.895 0.00 0.00 34.57 3.08
440 441 3.630289 GGATACCGCTGTCCACCT 58.370 61.111 0.00 0.00 34.57 4.00
452 453 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
453 454 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
463 464 1.895131 CCAAGATTTGAACCCTGGTGG 59.105 52.381 0.00 0.00 41.37 4.61
465 466 2.597455 CACCAAGATTTGAACCCTGGT 58.403 47.619 0.00 0.00 0.00 4.00
466 467 1.273327 GCACCAAGATTTGAACCCTGG 59.727 52.381 0.00 0.00 0.00 4.45
467 468 2.229784 GAGCACCAAGATTTGAACCCTG 59.770 50.000 0.00 0.00 0.00 4.45
470 471 1.401539 GCGAGCACCAAGATTTGAACC 60.402 52.381 0.00 0.00 0.00 3.62
471 472 1.266718 TGCGAGCACCAAGATTTGAAC 59.733 47.619 0.00 0.00 0.00 3.18
472 473 1.603456 TGCGAGCACCAAGATTTGAA 58.397 45.000 0.00 0.00 0.00 2.69
473 474 1.825090 ATGCGAGCACCAAGATTTGA 58.175 45.000 0.00 0.00 0.00 2.69
474 475 2.642139 AATGCGAGCACCAAGATTTG 57.358 45.000 0.00 0.00 0.00 2.32
475 476 4.202050 GGAATAATGCGAGCACCAAGATTT 60.202 41.667 0.00 0.00 0.00 2.17
476 477 3.316308 GGAATAATGCGAGCACCAAGATT 59.684 43.478 0.00 0.00 0.00 2.40
477 478 2.880890 GGAATAATGCGAGCACCAAGAT 59.119 45.455 0.00 0.00 0.00 2.40
478 479 2.092968 AGGAATAATGCGAGCACCAAGA 60.093 45.455 0.00 0.00 0.00 3.02
479 480 2.032550 CAGGAATAATGCGAGCACCAAG 59.967 50.000 0.00 0.00 0.00 3.61
480 481 2.016318 CAGGAATAATGCGAGCACCAA 58.984 47.619 0.00 0.00 0.00 3.67
481 482 1.209261 TCAGGAATAATGCGAGCACCA 59.791 47.619 0.00 0.00 0.00 4.17
483 484 4.558538 AATTCAGGAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
484 485 6.882610 ATAAATTCAGGAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
496 497 8.695456 GCTGGAAATCCTAAAATAAATTCAGGA 58.305 33.333 0.44 7.91 36.17 3.86
497 498 7.649306 CGCTGGAAATCCTAAAATAAATTCAGG 59.351 37.037 0.44 0.00 36.82 3.86
498 499 8.405531 TCGCTGGAAATCCTAAAATAAATTCAG 58.594 33.333 0.44 0.00 36.82 3.02
499 500 8.287439 TCGCTGGAAATCCTAAAATAAATTCA 57.713 30.769 0.44 0.00 36.82 2.57
500 501 9.185192 CATCGCTGGAAATCCTAAAATAAATTC 57.815 33.333 0.44 0.00 36.82 2.17
505 506 4.213270 CGCATCGCTGGAAATCCTAAAATA 59.787 41.667 0.44 0.00 36.82 1.40
506 507 3.003689 CGCATCGCTGGAAATCCTAAAAT 59.996 43.478 0.44 0.00 36.82 1.82
507 508 2.354510 CGCATCGCTGGAAATCCTAAAA 59.645 45.455 0.44 0.00 36.82 1.52
508 509 1.939934 CGCATCGCTGGAAATCCTAAA 59.060 47.619 0.44 0.00 36.82 1.85
509 510 1.581934 CGCATCGCTGGAAATCCTAA 58.418 50.000 0.44 0.00 36.82 2.69
510 511 3.289128 CGCATCGCTGGAAATCCTA 57.711 52.632 0.44 0.00 36.82 2.94
522 523 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
523 524 0.391661 TCTCCCACTGAAAGCGCATC 60.392 55.000 11.47 8.39 37.60 3.91
524 525 0.392193 CTCTCCCACTGAAAGCGCAT 60.392 55.000 11.47 0.00 37.60 4.73
525 526 1.004560 CTCTCCCACTGAAAGCGCA 60.005 57.895 11.47 0.00 37.60 6.09
526 527 1.016653 GTCTCTCCCACTGAAAGCGC 61.017 60.000 0.00 0.00 37.60 5.92
527 528 0.734253 CGTCTCTCCCACTGAAAGCG 60.734 60.000 0.00 0.00 37.60 4.68
528 529 0.318762 ACGTCTCTCCCACTGAAAGC 59.681 55.000 0.00 0.00 37.60 3.51
529 530 2.610727 GGAACGTCTCTCCCACTGAAAG 60.611 54.545 0.00 0.00 42.29 2.62
530 531 1.343465 GGAACGTCTCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
531 532 0.966920 GGAACGTCTCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
532 533 2.654802 GGAACGTCTCTCCCACTGA 58.345 57.895 0.00 0.00 0.00 3.41
560 561 1.919956 AAGTCACCGTAGACGCCTCG 61.920 60.000 0.00 0.00 43.24 4.63
561 562 0.179169 GAAGTCACCGTAGACGCCTC 60.179 60.000 0.00 0.00 43.24 4.70
562 563 1.881602 GAAGTCACCGTAGACGCCT 59.118 57.895 0.00 0.00 43.24 5.52
563 564 1.513586 CGAAGTCACCGTAGACGCC 60.514 63.158 0.00 0.00 43.24 5.68
564 565 0.443869 TACGAAGTCACCGTAGACGC 59.556 55.000 0.00 0.00 43.93 5.19
566 567 5.630680 TGAAATTTACGAAGTCACCGTAGAC 59.369 40.000 0.00 0.00 43.93 2.59
567 568 5.771469 TGAAATTTACGAAGTCACCGTAGA 58.229 37.500 0.00 0.00 43.93 2.59
569 570 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
570 571 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
572 573 7.129109 TCATCTTGAAATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02
575 576 9.374960 GCATATCATCTTGAAATTTACGAAGTC 57.625 33.333 0.00 0.00 43.93 3.01
577 578 7.531871 CGGCATATCATCTTGAAATTTACGAAG 59.468 37.037 0.00 0.00 0.00 3.79
578 579 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
579 580 6.073276 CCGGCATATCATCTTGAAATTTACGA 60.073 38.462 0.00 0.00 0.00 3.43
580 581 6.079763 CCGGCATATCATCTTGAAATTTACG 58.920 40.000 0.00 0.00 0.00 3.18
581 582 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
582 583 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
584 585 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
585 586 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
586 587 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
587 588 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
588 589 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
589 590 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
590 591 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
591 592 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
592 593 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
594 595 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
595 596 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
596 597 1.069823 CAAGAGACTGAGCCGGCATAT 59.930 52.381 31.54 8.11 0.00 1.78
597 598 0.461548 CAAGAGACTGAGCCGGCATA 59.538 55.000 31.54 16.21 0.00 3.14
598 599 1.220206 CAAGAGACTGAGCCGGCAT 59.780 57.895 31.54 14.28 0.00 4.40
599 600 2.659016 CAAGAGACTGAGCCGGCA 59.341 61.111 31.54 7.98 0.00 5.69
600 601 2.125350 CCAAGAGACTGAGCCGGC 60.125 66.667 21.89 21.89 0.00 6.13
602 603 1.254284 ACCTCCAAGAGACTGAGCCG 61.254 60.000 0.00 0.00 0.00 5.52
603 604 0.248843 CACCTCCAAGAGACTGAGCC 59.751 60.000 0.00 0.00 0.00 4.70
604 605 0.390998 GCACCTCCAAGAGACTGAGC 60.391 60.000 0.00 0.00 0.00 4.26
605 606 1.204467 GAGCACCTCCAAGAGACTGAG 59.796 57.143 0.00 0.00 0.00 3.35
606 607 1.261480 GAGCACCTCCAAGAGACTGA 58.739 55.000 0.00 0.00 0.00 3.41
607 608 0.972134 TGAGCACCTCCAAGAGACTG 59.028 55.000 0.00 0.00 0.00 3.51
609 610 2.102252 CCTATGAGCACCTCCAAGAGAC 59.898 54.545 0.00 0.00 0.00 3.36
610 611 2.392662 CCTATGAGCACCTCCAAGAGA 58.607 52.381 0.00 0.00 0.00 3.10
611 612 1.415659 CCCTATGAGCACCTCCAAGAG 59.584 57.143 0.00 0.00 0.00 2.85
612 613 1.008327 TCCCTATGAGCACCTCCAAGA 59.992 52.381 0.00 0.00 0.00 3.02
614 615 1.770658 CATCCCTATGAGCACCTCCAA 59.229 52.381 0.00 0.00 34.84 3.53
615 616 1.062198 TCATCCCTATGAGCACCTCCA 60.062 52.381 0.00 0.00 37.20 3.86
624 625 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
626 627 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
627 628 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
630 631 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
631 632 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
632 633 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
634 635 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
635 636 3.636282 TCATATACACGCGCATACACT 57.364 42.857 5.73 0.00 0.00 3.55
636 637 3.420035 CGTTCATATACACGCGCATACAC 60.420 47.826 5.73 0.00 0.00 2.90
637 638 2.722116 CGTTCATATACACGCGCATACA 59.278 45.455 5.73 0.00 0.00 2.29
638 639 3.333978 CGTTCATATACACGCGCATAC 57.666 47.619 5.73 0.00 0.00 2.39
647 648 4.816392 ACAGACACAAGCGTTCATATACA 58.184 39.130 0.00 0.00 0.00 2.29
648 649 6.034591 AGTACAGACACAAGCGTTCATATAC 58.965 40.000 0.00 0.00 0.00 1.47
649 650 6.203808 AGTACAGACACAAGCGTTCATATA 57.796 37.500 0.00 0.00 0.00 0.86
650 651 5.073311 AGTACAGACACAAGCGTTCATAT 57.927 39.130 0.00 0.00 0.00 1.78
651 652 4.514781 AGTACAGACACAAGCGTTCATA 57.485 40.909 0.00 0.00 0.00 2.15
654 655 4.434330 GCATTAGTACAGACACAAGCGTTC 60.434 45.833 0.00 0.00 0.00 3.95
655 656 3.432252 GCATTAGTACAGACACAAGCGTT 59.568 43.478 0.00 0.00 0.00 4.84
656 657 2.993899 GCATTAGTACAGACACAAGCGT 59.006 45.455 0.00 0.00 0.00 5.07
657 658 3.254060 AGCATTAGTACAGACACAAGCG 58.746 45.455 0.00 0.00 0.00 4.68
658 659 6.721571 TTTAGCATTAGTACAGACACAAGC 57.278 37.500 0.00 0.00 0.00 4.01
681 682 2.866688 GCATCACGCACGTGTTTTT 58.133 47.368 21.28 4.37 45.55 1.94
682 683 4.607024 GCATCACGCACGTGTTTT 57.393 50.000 21.28 6.64 45.55 2.43
698 699 4.915085 ACAATTAGTAAACGTTGCATGTGC 59.085 37.500 0.00 0.00 42.50 4.57
700 701 6.307031 TCACAATTAGTAAACGTTGCATGT 57.693 33.333 0.00 0.00 0.00 3.21
702 703 9.337091 GTTATTCACAATTAGTAAACGTTGCAT 57.663 29.630 0.00 0.00 0.00 3.96
704 705 8.716619 TGTTATTCACAATTAGTAAACGTTGC 57.283 30.769 0.00 0.00 29.87 4.17
713 714 8.531146 CCAAAGGGAATGTTATTCACAATTAGT 58.469 33.333 6.57 0.00 35.84 2.24
715 716 7.327214 GCCAAAGGGAATGTTATTCACAATTA 58.673 34.615 6.57 0.00 35.84 1.40
717 718 5.338300 GGCCAAAGGGAATGTTATTCACAAT 60.338 40.000 0.00 0.00 35.84 2.71
718 719 4.020662 GGCCAAAGGGAATGTTATTCACAA 60.021 41.667 0.00 0.00 35.84 3.33
719 720 3.513515 GGCCAAAGGGAATGTTATTCACA 59.486 43.478 0.00 0.00 36.48 3.58
720 721 3.118775 GGGCCAAAGGGAATGTTATTCAC 60.119 47.826 4.39 0.13 35.59 3.18
721 722 3.103742 GGGCCAAAGGGAATGTTATTCA 58.896 45.455 4.39 0.00 35.59 2.57
722 723 3.374764 AGGGCCAAAGGGAATGTTATTC 58.625 45.455 6.18 0.00 35.59 1.75
723 724 3.490060 AGGGCCAAAGGGAATGTTATT 57.510 42.857 6.18 0.00 35.59 1.40
725 726 4.405756 TTTAGGGCCAAAGGGAATGTTA 57.594 40.909 6.18 0.00 35.59 2.41
726 727 3.268034 TTTAGGGCCAAAGGGAATGTT 57.732 42.857 6.18 0.00 35.59 2.71
727 728 3.268034 TTTTAGGGCCAAAGGGAATGT 57.732 42.857 6.18 0.00 35.59 2.71
746 747 4.900635 AAAGACGCACACAGAGATTTTT 57.099 36.364 0.00 0.00 0.00 1.94
748 749 4.335315 TGAAAAAGACGCACACAGAGATTT 59.665 37.500 0.00 0.00 0.00 2.17
749 750 3.876914 TGAAAAAGACGCACACAGAGATT 59.123 39.130 0.00 0.00 0.00 2.40
750 751 3.248602 GTGAAAAAGACGCACACAGAGAT 59.751 43.478 0.00 0.00 32.96 2.75
751 752 2.607635 GTGAAAAAGACGCACACAGAGA 59.392 45.455 0.00 0.00 32.96 3.10
752 753 2.351418 TGTGAAAAAGACGCACACAGAG 59.649 45.455 0.00 0.00 37.60 3.35
753 754 2.351455 TGTGAAAAAGACGCACACAGA 58.649 42.857 0.00 0.00 37.60 3.41
754 755 2.823196 TGTGAAAAAGACGCACACAG 57.177 45.000 0.00 0.00 37.60 3.66
755 756 2.726373 CGTTGTGAAAAAGACGCACACA 60.726 45.455 0.00 0.00 41.72 3.72
756 757 1.837747 CGTTGTGAAAAAGACGCACAC 59.162 47.619 0.00 0.00 41.72 3.82
757 758 1.732809 TCGTTGTGAAAAAGACGCACA 59.267 42.857 0.00 0.00 40.44 4.57
758 759 2.445453 TCGTTGTGAAAAAGACGCAC 57.555 45.000 0.00 0.00 35.63 5.34
759 760 3.473093 TTTCGTTGTGAAAAAGACGCA 57.527 38.095 0.00 0.00 43.46 5.24
767 768 5.914635 GCATTGAGAGATTTTCGTTGTGAAA 59.085 36.000 0.00 0.00 44.70 2.69
768 769 5.451908 GCATTGAGAGATTTTCGTTGTGAA 58.548 37.500 0.00 0.00 33.85 3.18
769 770 4.083324 GGCATTGAGAGATTTTCGTTGTGA 60.083 41.667 0.00 0.00 0.00 3.58
770 771 4.083110 AGGCATTGAGAGATTTTCGTTGTG 60.083 41.667 0.00 0.00 0.00 3.33
771 772 4.074970 AGGCATTGAGAGATTTTCGTTGT 58.925 39.130 0.00 0.00 0.00 3.32
773 774 6.038714 GGATAAGGCATTGAGAGATTTTCGTT 59.961 38.462 0.00 0.00 0.00 3.85
774 775 5.529060 GGATAAGGCATTGAGAGATTTTCGT 59.471 40.000 0.00 0.00 0.00 3.85
775 776 5.762218 AGGATAAGGCATTGAGAGATTTTCG 59.238 40.000 0.00 0.00 0.00 3.46
776 777 8.153550 TCTAGGATAAGGCATTGAGAGATTTTC 58.846 37.037 0.00 0.00 0.00 2.29
777 778 8.038862 TCTAGGATAAGGCATTGAGAGATTTT 57.961 34.615 0.00 0.00 0.00 1.82
778 779 7.623999 TCTAGGATAAGGCATTGAGAGATTT 57.376 36.000 0.00 0.00 0.00 2.17
779 780 7.623999 TTCTAGGATAAGGCATTGAGAGATT 57.376 36.000 0.00 0.00 0.00 2.40
780 781 7.623999 TTTCTAGGATAAGGCATTGAGAGAT 57.376 36.000 0.00 0.00 0.00 2.75
782 783 8.688747 ATTTTTCTAGGATAAGGCATTGAGAG 57.311 34.615 0.00 0.00 0.00 3.20
812 813 9.651913 GGCAGAGATATTTATTTTAGGAGAGAG 57.348 37.037 0.00 0.00 0.00 3.20
813 814 8.598041 GGGCAGAGATATTTATTTTAGGAGAGA 58.402 37.037 0.00 0.00 0.00 3.10
814 815 8.601546 AGGGCAGAGATATTTATTTTAGGAGAG 58.398 37.037 0.00 0.00 0.00 3.20
815 816 8.378565 CAGGGCAGAGATATTTATTTTAGGAGA 58.621 37.037 0.00 0.00 0.00 3.71
816 817 7.120432 GCAGGGCAGAGATATTTATTTTAGGAG 59.880 40.741 0.00 0.00 0.00 3.69
817 818 6.942576 GCAGGGCAGAGATATTTATTTTAGGA 59.057 38.462 0.00 0.00 0.00 2.94
819 820 6.151817 GGGCAGGGCAGAGATATTTATTTTAG 59.848 42.308 0.00 0.00 0.00 1.85
821 822 4.835056 GGGCAGGGCAGAGATATTTATTTT 59.165 41.667 0.00 0.00 0.00 1.82
822 823 4.411013 GGGCAGGGCAGAGATATTTATTT 58.589 43.478 0.00 0.00 0.00 1.40
823 824 3.245407 GGGGCAGGGCAGAGATATTTATT 60.245 47.826 0.00 0.00 0.00 1.40
824 825 2.310052 GGGGCAGGGCAGAGATATTTAT 59.690 50.000 0.00 0.00 0.00 1.40
825 826 1.705186 GGGGCAGGGCAGAGATATTTA 59.295 52.381 0.00 0.00 0.00 1.40
837 838 1.825191 CATGTCATTCGGGGCAGGG 60.825 63.158 0.00 0.00 0.00 4.45
838 839 1.077501 ACATGTCATTCGGGGCAGG 60.078 57.895 0.00 0.00 0.00 4.85
869 870 1.405821 CTTCTAGAGGTTCGATGCGGT 59.594 52.381 0.00 0.00 0.00 5.68
870 871 1.405821 ACTTCTAGAGGTTCGATGCGG 59.594 52.381 0.82 0.00 0.00 5.69
889 3587 0.108804 TCGACCGCTGATGGAGAAAC 60.109 55.000 0.00 0.00 0.00 2.78
1017 3724 1.895131 GGAATGCTTTGGTGGTGATGT 59.105 47.619 0.00 0.00 0.00 3.06
1397 4164 0.971447 AGGTACTTGGCGTCCTCCTC 60.971 60.000 0.00 0.00 27.25 3.71
2021 5005 3.397527 TCTATCCTCCCAAAAGGCAGAT 58.602 45.455 0.00 0.00 36.29 2.90
2435 5537 4.685165 TCACGTTTTTCATCGTCGGATTTA 59.315 37.500 0.00 0.00 38.23 1.40
2447 5549 6.130298 ACAAGTCATCATTCACGTTTTTCA 57.870 33.333 0.00 0.00 0.00 2.69
2577 7126 3.390639 AGCCCTCTATGGAATTCAGTCTG 59.609 47.826 7.93 0.00 38.35 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.