Multiple sequence alignment - TraesCS3B01G130300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G130300 chr3B 100.000 2740 0 0 1 2740 112466703 112463964 0.000000e+00 5060.0
1 TraesCS3B01G130300 chr3B 89.672 1433 100 26 202 1612 112949250 112947844 0.000000e+00 1783.0
2 TraesCS3B01G130300 chr3B 90.113 1325 97 14 301 1609 112497911 112496605 0.000000e+00 1690.0
3 TraesCS3B01G130300 chr3B 86.576 1028 83 35 765 1757 113299552 113298545 0.000000e+00 1083.0
4 TraesCS3B01G130300 chr3B 90.689 827 47 20 743 1555 113483181 113483991 0.000000e+00 1074.0
5 TraesCS3B01G130300 chr3B 85.826 1023 81 34 769 1757 112836311 112835319 0.000000e+00 1027.0
6 TraesCS3B01G130300 chr3B 89.474 684 54 7 899 1566 113512748 113512067 0.000000e+00 848.0
7 TraesCS3B01G130300 chr3B 92.417 211 16 0 1 211 112513462 112513252 4.430000e-78 302.0
8 TraesCS3B01G130300 chr3B 90.047 211 21 0 1 211 112950740 112950530 9.670000e-70 274.0
9 TraesCS3B01G130300 chr3B 74.564 287 45 16 179 454 3409708 3409977 1.740000e-17 100.0
10 TraesCS3B01G130300 chr3A 87.441 1274 87 29 773 1991 80412819 80414074 0.000000e+00 1399.0
11 TraesCS3B01G130300 chr3A 86.473 584 40 12 2172 2740 80414166 80414725 3.020000e-169 604.0
12 TraesCS3B01G130300 chr3A 81.928 83 13 2 633 714 60240993 60240912 4.900000e-08 69.4
13 TraesCS3B01G130300 chr3D 86.890 1045 71 27 847 1882 68842745 68843732 0.000000e+00 1110.0
14 TraesCS3B01G130300 chr3D 90.590 712 49 7 905 1610 68833105 68833804 0.000000e+00 928.0
15 TraesCS3B01G130300 chr3D 89.474 684 52 11 900 1566 68170085 68170765 0.000000e+00 846.0
16 TraesCS3B01G130300 chr3D 89.233 678 54 10 900 1566 68273624 68274293 0.000000e+00 830.0
17 TraesCS3B01G130300 chr3D 90.613 522 40 5 2171 2685 68843950 68844469 0.000000e+00 684.0
18 TraesCS3B01G130300 chr3D 83.893 149 10 9 718 853 68839572 68839719 2.210000e-26 130.0
19 TraesCS3B01G130300 chr3D 100.000 28 0 0 2008 2035 569161645 569161672 5.000000e-03 52.8
20 TraesCS3B01G130300 chr4D 88.525 915 73 21 718 1607 134550736 134549829 0.000000e+00 1079.0
21 TraesCS3B01G130300 chr4D 83.379 734 96 19 1 721 394111428 394112148 0.000000e+00 656.0
22 TraesCS3B01G130300 chr7B 88.396 767 74 13 848 1610 603657032 603657787 0.000000e+00 909.0
23 TraesCS3B01G130300 chr6B 86.455 694 77 4 1 685 600784078 600783393 0.000000e+00 745.0
24 TraesCS3B01G130300 chr6B 84.444 90 13 1 633 722 130158070 130157982 1.350000e-13 87.9
25 TraesCS3B01G130300 chr6B 85.000 80 9 3 633 711 56546290 56546367 8.130000e-11 78.7
26 TraesCS3B01G130300 chr6B 85.000 80 9 3 633 711 232169913 232169836 8.130000e-11 78.7
27 TraesCS3B01G130300 chr1B 82.490 731 110 14 1 724 457315944 457315225 2.320000e-175 625.0
28 TraesCS3B01G130300 chr1B 83.784 74 10 2 633 705 501417766 501417838 4.900000e-08 69.4
29 TraesCS3B01G130300 chr1D 85.539 408 42 10 1 399 341471987 341471588 7.060000e-111 411.0
30 TraesCS3B01G130300 chr1A 79.229 597 96 18 134 724 441038558 441037984 9.200000e-105 390.0
31 TraesCS3B01G130300 chr7D 88.889 252 22 1 1 246 318819324 318819073 3.430000e-79 305.0
32 TraesCS3B01G130300 chr5B 93.220 177 12 0 1 177 436291970 436292146 7.530000e-66 261.0
33 TraesCS3B01G130300 chr2D 85.281 231 31 2 273 501 112923595 112923366 4.560000e-58 235.0
34 TraesCS3B01G130300 chr2D 86.765 68 8 1 663 729 629069271 629069204 1.050000e-09 75.0
35 TraesCS3B01G130300 chr4A 80.252 238 39 7 273 503 379463318 379463554 3.630000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G130300 chr3B 112463964 112466703 2739 True 5060.000000 5060 100.0000 1 2740 1 chr3B.!!$R1 2739
1 TraesCS3B01G130300 chr3B 112496605 112497911 1306 True 1690.000000 1690 90.1130 301 1609 1 chr3B.!!$R2 1308
2 TraesCS3B01G130300 chr3B 113298545 113299552 1007 True 1083.000000 1083 86.5760 765 1757 1 chr3B.!!$R5 992
3 TraesCS3B01G130300 chr3B 113483181 113483991 810 False 1074.000000 1074 90.6890 743 1555 1 chr3B.!!$F2 812
4 TraesCS3B01G130300 chr3B 112947844 112950740 2896 True 1028.500000 1783 89.8595 1 1612 2 chr3B.!!$R7 1611
5 TraesCS3B01G130300 chr3B 112835319 112836311 992 True 1027.000000 1027 85.8260 769 1757 1 chr3B.!!$R4 988
6 TraesCS3B01G130300 chr3B 113512067 113512748 681 True 848.000000 848 89.4740 899 1566 1 chr3B.!!$R6 667
7 TraesCS3B01G130300 chr3A 80412819 80414725 1906 False 1001.500000 1399 86.9570 773 2740 2 chr3A.!!$F1 1967
8 TraesCS3B01G130300 chr3D 68833105 68833804 699 False 928.000000 928 90.5900 905 1610 1 chr3D.!!$F3 705
9 TraesCS3B01G130300 chr3D 68170085 68170765 680 False 846.000000 846 89.4740 900 1566 1 chr3D.!!$F1 666
10 TraesCS3B01G130300 chr3D 68273624 68274293 669 False 830.000000 830 89.2330 900 1566 1 chr3D.!!$F2 666
11 TraesCS3B01G130300 chr3D 68839572 68844469 4897 False 641.333333 1110 87.1320 718 2685 3 chr3D.!!$F5 1967
12 TraesCS3B01G130300 chr4D 134549829 134550736 907 True 1079.000000 1079 88.5250 718 1607 1 chr4D.!!$R1 889
13 TraesCS3B01G130300 chr4D 394111428 394112148 720 False 656.000000 656 83.3790 1 721 1 chr4D.!!$F1 720
14 TraesCS3B01G130300 chr7B 603657032 603657787 755 False 909.000000 909 88.3960 848 1610 1 chr7B.!!$F1 762
15 TraesCS3B01G130300 chr6B 600783393 600784078 685 True 745.000000 745 86.4550 1 685 1 chr6B.!!$R3 684
16 TraesCS3B01G130300 chr1B 457315225 457315944 719 True 625.000000 625 82.4900 1 724 1 chr1B.!!$R1 723
17 TraesCS3B01G130300 chr1A 441037984 441038558 574 True 390.000000 390 79.2290 134 724 1 chr1A.!!$R1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 2139 0.043032 AATGACATGTGGGGCCCAAT 59.957 50.0 30.7 19.81 34.18 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 6503 0.106116 GGAGGACGGAGGGAGTATGT 60.106 60.0 0.0 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 123 2.821378 TGGAACTGTTATCGACGGAAGA 59.179 45.455 0.00 0.00 38.07 2.87
123 130 3.446161 TGTTATCGACGGAAGATGGAACT 59.554 43.478 0.00 0.00 0.00 3.01
127 134 1.475280 CGACGGAAGATGGAACTGGTA 59.525 52.381 0.00 0.00 0.00 3.25
230 1527 1.061566 GCTACATCCGGCGTTTTGTAC 59.938 52.381 6.01 2.88 0.00 2.90
252 1549 1.302383 TTGCGAAGGTTATGTGCCGG 61.302 55.000 0.00 0.00 0.00 6.13
374 1676 3.400054 GGGCCGGGAGCTACAACT 61.400 66.667 2.18 0.00 43.05 3.16
382 1687 1.465794 GGAGCTACAACTCTCTCCGT 58.534 55.000 0.00 0.00 36.18 4.69
383 1688 1.819903 GGAGCTACAACTCTCTCCGTT 59.180 52.381 0.00 0.00 36.18 4.44
454 1759 1.033202 TGCACGACGAGGTAGCCATA 61.033 55.000 0.00 0.00 0.00 2.74
460 1765 2.299521 GACGAGGTAGCCATAGTGAGT 58.700 52.381 0.00 0.00 0.00 3.41
464 1769 3.057876 CGAGGTAGCCATAGTGAGTGATC 60.058 52.174 0.00 0.00 0.00 2.92
478 1783 0.179111 GTGATCTGAACGGCGATGGA 60.179 55.000 16.62 6.49 0.00 3.41
491 1796 1.078143 GATGGAGAAGGCCGCAAGT 60.078 57.895 0.00 0.00 0.00 3.16
541 1846 3.334054 GCTGGGAGGAAGGTGGCT 61.334 66.667 0.00 0.00 0.00 4.75
613 1919 3.784511 AAGATAGACGACGGGAGGATA 57.215 47.619 0.00 0.00 0.00 2.59
627 1933 3.070302 GGGAGGATAAGAACGAAGCAGAT 59.930 47.826 0.00 0.00 0.00 2.90
629 1935 3.462021 AGGATAAGAACGAAGCAGATGC 58.538 45.455 0.00 0.00 42.49 3.91
648 1954 2.167693 TGCTCGATCTGGACGGTTAAAT 59.832 45.455 0.00 0.00 0.00 1.40
651 1957 2.498481 TCGATCTGGACGGTTAAATGGT 59.502 45.455 0.00 0.00 0.00 3.55
652 1958 2.607635 CGATCTGGACGGTTAAATGGTG 59.392 50.000 0.00 0.00 0.00 4.17
660 1966 1.815613 CGGTTAAATGGTGGTGCATCA 59.184 47.619 0.00 0.00 0.00 3.07
702 2008 0.740516 CAAATTTGGGCCGATGCACC 60.741 55.000 10.49 0.00 41.56 5.01
716 2022 1.301401 GCACCGGCGCCTATCATTA 60.301 57.895 26.68 0.00 0.00 1.90
815 2139 0.043032 AATGACATGTGGGGCCCAAT 59.957 50.000 30.70 19.81 34.18 3.16
995 5382 1.643868 GCATCGCATCACCACCGAAA 61.644 55.000 0.00 0.00 34.42 3.46
996 5383 0.801872 CATCGCATCACCACCGAAAA 59.198 50.000 0.00 0.00 34.42 2.29
1025 5424 7.065563 TCCACAAAATTCAACAAACAATCCAAG 59.934 33.333 0.00 0.00 0.00 3.61
1542 5961 1.228552 GCCCAAGAAGCCCAAGACA 60.229 57.895 0.00 0.00 0.00 3.41
1620 6091 1.546476 CAGTGGGTAGTGTCTGTCCTC 59.454 57.143 0.00 0.00 0.00 3.71
1639 6110 6.183360 TGTCCTCTGATTTCATCTGCTAGTAC 60.183 42.308 0.00 0.00 0.00 2.73
1727 6201 6.403527 CGTTAATGGAAATGCAGATGTTCTCA 60.404 38.462 0.00 0.00 0.00 3.27
1749 6223 6.465948 TCATGCTTTGCCTGAATAAAACATT 58.534 32.000 0.00 0.00 30.90 2.71
1772 6246 5.757886 TCGAATCTTGAAATTTTGAAGCGT 58.242 33.333 3.74 0.00 0.00 5.07
1794 6274 3.816523 TGTTTTTAAGTTAGAGGCCCGTG 59.183 43.478 0.00 0.00 0.00 4.94
1799 6279 1.892209 AGTTAGAGGCCCGTGTTTTG 58.108 50.000 0.00 0.00 0.00 2.44
1804 6285 0.747852 GAGGCCCGTGTTTTGGAAAA 59.252 50.000 0.00 0.00 0.00 2.29
1805 6286 1.137282 GAGGCCCGTGTTTTGGAAAAA 59.863 47.619 0.00 0.00 0.00 1.94
1838 6319 9.463443 AACTGCATTTGTAACTAAATGAGAAAC 57.537 29.630 13.61 0.00 46.13 2.78
1841 6322 7.594758 TGCATTTGTAACTAAATGAGAAACTGC 59.405 33.333 13.61 0.00 46.13 4.40
1893 6374 5.710513 TTTCAGCAGCTACACAAATCATT 57.289 34.783 0.00 0.00 0.00 2.57
1898 6379 3.504863 CAGCTACACAAATCATTGGTGC 58.495 45.455 4.65 0.00 41.01 5.01
1901 6382 4.082571 AGCTACACAAATCATTGGTGCTTC 60.083 41.667 4.65 0.00 41.01 3.86
1911 6392 0.684535 TTGGTGCTTCGATGTCTGGA 59.315 50.000 0.00 0.00 0.00 3.86
1917 6398 3.436704 GTGCTTCGATGTCTGGATTTTGA 59.563 43.478 0.00 0.00 0.00 2.69
1946 6437 4.581309 AAGATTTCCTCCTGCAATCTGA 57.419 40.909 0.00 0.00 37.34 3.27
1994 6493 5.516996 TCGACATTCGATTACACATACTCC 58.483 41.667 0.00 0.00 44.82 3.85
1995 6494 4.680110 CGACATTCGATTACACATACTCCC 59.320 45.833 0.00 0.00 43.74 4.30
1998 6497 4.931661 TTCGATTACACATACTCCCTCC 57.068 45.455 0.00 0.00 0.00 4.30
1999 6498 2.882761 TCGATTACACATACTCCCTCCG 59.117 50.000 0.00 0.00 0.00 4.63
2000 6499 2.621998 CGATTACACATACTCCCTCCGT 59.378 50.000 0.00 0.00 0.00 4.69
2001 6500 3.067742 CGATTACACATACTCCCTCCGTT 59.932 47.826 0.00 0.00 0.00 4.44
2002 6501 4.276678 CGATTACACATACTCCCTCCGTTA 59.723 45.833 0.00 0.00 0.00 3.18
2003 6502 4.989279 TTACACATACTCCCTCCGTTAC 57.011 45.455 0.00 0.00 0.00 2.50
2004 6503 2.811410 ACACATACTCCCTCCGTTACA 58.189 47.619 0.00 0.00 0.00 2.41
2007 6506 3.132289 CACATACTCCCTCCGTTACACAT 59.868 47.826 0.00 0.00 0.00 3.21
2008 6507 4.340097 CACATACTCCCTCCGTTACACATA 59.660 45.833 0.00 0.00 0.00 2.29
2009 6508 4.340381 ACATACTCCCTCCGTTACACATAC 59.660 45.833 0.00 0.00 0.00 2.39
2010 6509 3.097342 ACTCCCTCCGTTACACATACT 57.903 47.619 0.00 0.00 0.00 2.12
2011 6510 3.022406 ACTCCCTCCGTTACACATACTC 58.978 50.000 0.00 0.00 0.00 2.59
2012 6511 2.361438 CTCCCTCCGTTACACATACTCC 59.639 54.545 0.00 0.00 0.00 3.85
2013 6512 1.411612 CCCTCCGTTACACATACTCCC 59.588 57.143 0.00 0.00 0.00 4.30
2015 6514 2.361438 CCTCCGTTACACATACTCCCTC 59.639 54.545 0.00 0.00 0.00 4.30
2016 6515 2.361438 CTCCGTTACACATACTCCCTCC 59.639 54.545 0.00 0.00 0.00 4.30
2018 6517 1.747355 CGTTACACATACTCCCTCCGT 59.253 52.381 0.00 0.00 0.00 4.69
2019 6518 2.223433 CGTTACACATACTCCCTCCGTC 60.223 54.545 0.00 0.00 0.00 4.79
2020 6519 2.062971 TACACATACTCCCTCCGTCC 57.937 55.000 0.00 0.00 0.00 4.79
2021 6520 0.335361 ACACATACTCCCTCCGTCCT 59.665 55.000 0.00 0.00 0.00 3.85
2022 6521 1.033574 CACATACTCCCTCCGTCCTC 58.966 60.000 0.00 0.00 0.00 3.71
2024 6523 1.150992 ATACTCCCTCCGTCCTCCG 59.849 63.158 0.00 0.00 0.00 4.63
2025 6524 1.643475 ATACTCCCTCCGTCCTCCGT 61.643 60.000 0.00 0.00 33.66 4.69
2026 6525 2.262774 TACTCCCTCCGTCCTCCGTC 62.263 65.000 0.00 0.00 33.66 4.79
2027 6526 4.437587 TCCCTCCGTCCTCCGTCC 62.438 72.222 0.00 0.00 33.66 4.79
2029 6528 4.790962 CCTCCGTCCTCCGTCCGA 62.791 72.222 0.00 0.00 33.66 4.55
2030 6529 2.749044 CTCCGTCCTCCGTCCGAA 60.749 66.667 0.00 0.00 33.66 4.30
2031 6530 2.282391 TCCGTCCTCCGTCCGAAA 60.282 61.111 0.00 0.00 33.66 3.46
2032 6531 1.870055 CTCCGTCCTCCGTCCGAAAA 61.870 60.000 0.00 0.00 33.66 2.29
2033 6532 1.217244 CCGTCCTCCGTCCGAAAAT 59.783 57.895 0.00 0.00 33.66 1.82
2034 6533 0.457035 CCGTCCTCCGTCCGAAAATA 59.543 55.000 0.00 0.00 33.66 1.40
2035 6534 1.135024 CCGTCCTCCGTCCGAAAATAA 60.135 52.381 0.00 0.00 33.66 1.40
2036 6535 2.609350 CGTCCTCCGTCCGAAAATAAA 58.391 47.619 0.00 0.00 0.00 1.40
2037 6536 3.192466 CGTCCTCCGTCCGAAAATAAAT 58.808 45.455 0.00 0.00 0.00 1.40
2038 6537 3.000925 CGTCCTCCGTCCGAAAATAAATG 59.999 47.826 0.00 0.00 0.00 2.32
2039 6538 3.937079 GTCCTCCGTCCGAAAATAAATGT 59.063 43.478 0.00 0.00 0.00 2.71
2040 6539 4.033702 GTCCTCCGTCCGAAAATAAATGTC 59.966 45.833 0.00 0.00 0.00 3.06
2041 6540 3.311596 CCTCCGTCCGAAAATAAATGTCC 59.688 47.826 0.00 0.00 0.00 4.02
2042 6541 3.272581 TCCGTCCGAAAATAAATGTCCC 58.727 45.455 0.00 0.00 0.00 4.46
2043 6542 3.011119 CCGTCCGAAAATAAATGTCCCA 58.989 45.455 0.00 0.00 0.00 4.37
2044 6543 3.440872 CCGTCCGAAAATAAATGTCCCAA 59.559 43.478 0.00 0.00 0.00 4.12
2045 6544 4.408694 CGTCCGAAAATAAATGTCCCAAC 58.591 43.478 0.00 0.00 0.00 3.77
2046 6545 4.155280 CGTCCGAAAATAAATGTCCCAACT 59.845 41.667 0.00 0.00 0.00 3.16
2047 6546 5.335348 CGTCCGAAAATAAATGTCCCAACTT 60.335 40.000 0.00 0.00 0.00 2.66
2048 6547 6.090783 GTCCGAAAATAAATGTCCCAACTTC 58.909 40.000 0.00 0.00 0.00 3.01
2049 6548 5.770663 TCCGAAAATAAATGTCCCAACTTCA 59.229 36.000 0.00 0.00 0.00 3.02
2050 6549 6.265649 TCCGAAAATAAATGTCCCAACTTCAA 59.734 34.615 0.00 0.00 0.00 2.69
2051 6550 6.364976 CCGAAAATAAATGTCCCAACTTCAAC 59.635 38.462 0.00 0.00 0.00 3.18
2052 6551 6.920758 CGAAAATAAATGTCCCAACTTCAACA 59.079 34.615 0.00 0.00 0.00 3.33
2053 6552 7.436673 CGAAAATAAATGTCCCAACTTCAACAA 59.563 33.333 0.00 0.00 0.00 2.83
2054 6553 8.432110 AAAATAAATGTCCCAACTTCAACAAC 57.568 30.769 0.00 0.00 0.00 3.32
2055 6554 6.976934 ATAAATGTCCCAACTTCAACAACT 57.023 33.333 0.00 0.00 0.00 3.16
2056 6555 5.675684 AAATGTCCCAACTTCAACAACTT 57.324 34.783 0.00 0.00 0.00 2.66
2057 6556 4.654091 ATGTCCCAACTTCAACAACTTG 57.346 40.909 0.00 0.00 0.00 3.16
2058 6557 2.757868 TGTCCCAACTTCAACAACTTGG 59.242 45.455 0.00 0.00 34.10 3.61
2059 6558 2.888834 CCCAACTTCAACAACTTGGG 57.111 50.000 0.00 0.00 45.39 4.12
2060 6559 2.107366 CCCAACTTCAACAACTTGGGT 58.893 47.619 6.20 0.00 45.52 4.51
2061 6560 3.292460 CCCAACTTCAACAACTTGGGTA 58.708 45.455 6.20 0.00 45.52 3.69
2095 6594 9.797642 TTGATATAAGCTGATTTGGATATGTGT 57.202 29.630 0.00 0.00 0.00 3.72
2104 6604 7.043192 GCTGATTTGGATATGTGTTGTATTTGC 60.043 37.037 0.00 0.00 0.00 3.68
2111 6611 7.134815 GGATATGTGTTGTATTTGCACTGATC 58.865 38.462 0.00 0.00 34.52 2.92
2114 6614 6.389830 TGTGTTGTATTTGCACTGATCTTT 57.610 33.333 0.00 0.00 34.52 2.52
2126 6626 9.691362 TTTGCACTGATCTTTAAATTTACTTCC 57.309 29.630 0.00 0.00 0.00 3.46
2128 6628 8.730680 TGCACTGATCTTTAAATTTACTTCCTC 58.269 33.333 0.00 0.00 0.00 3.71
2130 6630 9.231297 CACTGATCTTTAAATTTACTTCCTCCA 57.769 33.333 0.00 0.00 0.00 3.86
2135 6635 9.807921 ATCTTTAAATTTACTTCCTCCAAGTCA 57.192 29.630 0.00 0.00 42.07 3.41
2136 6636 9.635404 TCTTTAAATTTACTTCCTCCAAGTCAA 57.365 29.630 0.00 0.00 42.07 3.18
2141 6641 7.839680 ATTTACTTCCTCCAAGTCAAAATGT 57.160 32.000 0.00 0.00 42.07 2.71
2142 6642 8.934023 ATTTACTTCCTCCAAGTCAAAATGTA 57.066 30.769 0.00 0.00 42.07 2.29
2143 6643 8.754991 TTTACTTCCTCCAAGTCAAAATGTAA 57.245 30.769 0.00 0.00 42.07 2.41
2144 6644 8.754991 TTACTTCCTCCAAGTCAAAATGTAAA 57.245 30.769 0.00 0.00 42.07 2.01
2145 6645 7.654022 ACTTCCTCCAAGTCAAAATGTAAAA 57.346 32.000 0.00 0.00 42.07 1.52
2146 6646 7.489160 ACTTCCTCCAAGTCAAAATGTAAAAC 58.511 34.615 0.00 0.00 42.07 2.43
2147 6647 6.399639 TCCTCCAAGTCAAAATGTAAAACC 57.600 37.500 0.00 0.00 0.00 3.27
2148 6648 6.133356 TCCTCCAAGTCAAAATGTAAAACCT 58.867 36.000 0.00 0.00 0.00 3.50
2149 6649 6.609616 TCCTCCAAGTCAAAATGTAAAACCTT 59.390 34.615 0.00 0.00 0.00 3.50
2150 6650 7.125053 TCCTCCAAGTCAAAATGTAAAACCTTT 59.875 33.333 0.00 0.00 0.00 3.11
2151 6651 7.768582 CCTCCAAGTCAAAATGTAAAACCTTTT 59.231 33.333 0.00 0.00 0.00 2.27
2152 6652 9.161629 CTCCAAGTCAAAATGTAAAACCTTTTT 57.838 29.630 0.00 0.00 0.00 1.94
2153 6653 8.940952 TCCAAGTCAAAATGTAAAACCTTTTTG 58.059 29.630 0.00 0.00 39.20 2.44
2154 6654 7.696035 CCAAGTCAAAATGTAAAACCTTTTTGC 59.304 33.333 0.00 0.00 38.42 3.68
2155 6655 7.913674 AGTCAAAATGTAAAACCTTTTTGCA 57.086 28.000 4.91 4.91 38.42 4.08
2156 6656 7.973601 AGTCAAAATGTAAAACCTTTTTGCAG 58.026 30.769 7.95 0.00 38.42 4.41
2157 6657 7.606073 AGTCAAAATGTAAAACCTTTTTGCAGT 59.394 29.630 7.95 3.18 38.42 4.40
2158 6658 8.233868 GTCAAAATGTAAAACCTTTTTGCAGTT 58.766 29.630 8.65 8.65 38.42 3.16
2159 6659 8.447053 TCAAAATGTAAAACCTTTTTGCAGTTC 58.553 29.630 13.06 0.00 38.42 3.01
2160 6660 7.913674 AAATGTAAAACCTTTTTGCAGTTCA 57.086 28.000 8.65 0.00 0.00 3.18
2161 6661 7.913674 AATGTAAAACCTTTTTGCAGTTCAA 57.086 28.000 7.95 0.00 0.00 2.69
2162 6662 7.913674 ATGTAAAACCTTTTTGCAGTTCAAA 57.086 28.000 7.95 0.00 42.50 2.69
2175 6675 9.814899 TTTTGCAGTTCAAAATATTTTCAGAGA 57.185 25.926 10.53 2.87 46.44 3.10
2239 6739 6.689669 ACAGAAATAAAACAACGCACAACTAC 59.310 34.615 0.00 0.00 0.00 2.73
2241 6741 7.378461 CAGAAATAAAACAACGCACAACTACAT 59.622 33.333 0.00 0.00 0.00 2.29
2244 6744 4.364415 AAACAACGCACAACTACATGTT 57.636 36.364 2.30 0.00 39.92 2.71
2273 6773 0.758123 TTCTTTTTGCTTGGCCAGGG 59.242 50.000 17.71 10.14 0.00 4.45
2275 6775 0.758123 CTTTTTGCTTGGCCAGGGAA 59.242 50.000 18.10 18.10 0.00 3.97
2276 6776 1.348696 CTTTTTGCTTGGCCAGGGAAT 59.651 47.619 22.30 0.00 0.00 3.01
2277 6777 0.686224 TTTTGCTTGGCCAGGGAATG 59.314 50.000 22.30 3.40 0.00 2.67
2278 6778 0.471591 TTTGCTTGGCCAGGGAATGT 60.472 50.000 22.30 0.00 0.00 2.71
2279 6779 1.186917 TTGCTTGGCCAGGGAATGTG 61.187 55.000 18.10 0.00 0.00 3.21
2292 6792 0.252197 GAATGTGGTACCCCGAGCTT 59.748 55.000 10.07 0.00 0.00 3.74
2302 6802 2.227194 ACCCCGAGCTTTGTTACAAAG 58.773 47.619 27.66 27.66 0.00 2.77
2303 6803 2.227194 CCCCGAGCTTTGTTACAAAGT 58.773 47.619 30.47 20.56 0.00 2.66
2304 6804 3.181452 ACCCCGAGCTTTGTTACAAAGTA 60.181 43.478 30.47 4.00 0.00 2.24
2306 6806 4.094442 CCCCGAGCTTTGTTACAAAGTATC 59.906 45.833 30.47 26.31 0.00 2.24
2312 6814 4.153475 GCTTTGTTACAAAGTATCGCAGGA 59.847 41.667 30.47 0.00 0.00 3.86
2348 6850 5.811613 CACAAGGCAGAAAAATCAGTTCAAA 59.188 36.000 0.00 0.00 0.00 2.69
2356 6858 7.615790 CAGAAAAATCAGTTCAAACTTCAAGC 58.384 34.615 0.00 0.00 37.08 4.01
2389 6891 7.648039 AAATTCACTACTGGGTACACAAAAA 57.352 32.000 0.00 0.00 0.00 1.94
2435 6941 0.323816 TGTCTCCGAGATGTCAGGCT 60.324 55.000 0.33 0.00 0.00 4.58
2440 6946 0.534412 CCGAGATGTCAGGCTGAACT 59.466 55.000 20.62 17.92 0.00 3.01
2474 6980 0.179189 CCAGCGAAAATGAAGCGACC 60.179 55.000 0.00 0.00 35.78 4.79
2488 6994 0.523072 GCGACCAACATGATGCAAGT 59.477 50.000 0.00 0.00 0.00 3.16
2514 7020 5.728637 ACATAGTATCTGCATCCGAATCA 57.271 39.130 0.00 0.00 0.00 2.57
2533 7039 0.179100 AGAATCGCCGTCATCCTGTG 60.179 55.000 0.00 0.00 0.00 3.66
2565 7071 2.784380 GCTGTTGAGATTACTCGCGTAG 59.216 50.000 5.77 4.90 45.25 3.51
2598 7104 2.030457 CGTTATCTTGTCCCGCACATTC 59.970 50.000 0.00 0.00 33.90 2.67
2599 7105 3.006940 GTTATCTTGTCCCGCACATTCA 58.993 45.455 0.00 0.00 33.90 2.57
2610 7116 2.288729 CCGCACATTCATGGACATGTAG 59.711 50.000 11.66 6.14 39.72 2.74
2688 7205 6.644775 TGCAACAAAATTTCAATTCGCTTAC 58.355 32.000 0.00 0.00 0.00 2.34
2731 7249 6.252599 AGTGATGGTCCATATGTTACACAT 57.747 37.500 17.05 5.77 42.35 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 123 6.173427 AGCAAAACAAAATACCAGTTCCAT 57.827 33.333 0.00 0.00 0.00 3.41
123 130 4.806247 CGGTTGAAGCAAAACAAAATACCA 59.194 37.500 0.00 0.00 0.00 3.25
127 134 3.549873 CGTCGGTTGAAGCAAAACAAAAT 59.450 39.130 0.00 0.00 0.00 1.82
230 1527 1.135689 GGCACATAACCTTCGCAACAG 60.136 52.381 0.00 0.00 0.00 3.16
252 1549 1.398390 GCCGTCATCTGGTCATTGTTC 59.602 52.381 0.00 0.00 0.00 3.18
306 1608 2.668212 CCGCCTCTTGCCGTCAAA 60.668 61.111 0.00 0.00 36.24 2.69
374 1676 1.030488 CCTAGCACCGAACGGAGAGA 61.030 60.000 20.14 2.97 38.96 3.10
382 1687 2.263540 GCCGTTCCTAGCACCGAA 59.736 61.111 0.00 0.00 0.00 4.30
383 1688 4.124351 CGCCGTTCCTAGCACCGA 62.124 66.667 0.00 0.00 0.00 4.69
454 1759 0.109086 CGCCGTTCAGATCACTCACT 60.109 55.000 0.00 0.00 0.00 3.41
460 1765 0.103026 CTCCATCGCCGTTCAGATCA 59.897 55.000 0.00 0.00 0.00 2.92
464 1769 0.807667 CCTTCTCCATCGCCGTTCAG 60.808 60.000 0.00 0.00 0.00 3.02
478 1783 2.980233 GTGCACTTGCGGCCTTCT 60.980 61.111 10.32 0.00 45.83 2.85
486 1791 2.052237 CGTTGACGGTGCACTTGC 60.052 61.111 17.98 6.61 37.35 4.01
627 1933 1.179152 TTAACCGTCCAGATCGAGCA 58.821 50.000 2.38 0.00 0.00 4.26
629 1935 3.123804 CCATTTAACCGTCCAGATCGAG 58.876 50.000 0.00 0.00 0.00 4.04
638 1944 1.240256 TGCACCACCATTTAACCGTC 58.760 50.000 0.00 0.00 0.00 4.79
648 1954 2.358615 GCGTCTGATGCACCACCA 60.359 61.111 16.63 0.00 0.00 4.17
651 1957 1.079612 CTGAGCGTCTGATGCACCA 60.080 57.895 22.70 17.57 31.07 4.17
652 1958 1.812922 CCTGAGCGTCTGATGCACC 60.813 63.158 22.70 14.29 31.07 5.01
696 2002 2.680974 AATGATAGGCGCCGGTGCAT 62.681 55.000 38.40 34.95 37.32 3.96
697 2003 2.034048 TAATGATAGGCGCCGGTGCA 62.034 55.000 38.40 22.04 37.32 4.57
702 2008 0.892755 TAGGGTAATGATAGGCGCCG 59.107 55.000 23.20 0.00 0.00 6.46
781 2105 1.147824 CATTCGGGGCAGCAGAGAT 59.852 57.895 0.00 0.00 0.00 2.75
947 5328 3.590127 GAGCTTATGTAGGTCGCCC 57.410 57.895 0.00 0.00 41.17 6.13
995 5382 9.786105 GATTGTTTGTTGAATTTTGTGGAATTT 57.214 25.926 0.00 0.00 29.75 1.82
996 5383 8.404765 GGATTGTTTGTTGAATTTTGTGGAATT 58.595 29.630 0.00 0.00 32.16 2.17
1071 5481 2.440796 ACCATGCCCGCCATTCTG 60.441 61.111 0.00 0.00 29.71 3.02
1542 5961 2.670148 GGCGACCTGGACCTGGATT 61.670 63.158 23.36 2.17 0.00 3.01
1639 6110 2.621055 CACCCTCTCTCTCAGATAACCG 59.379 54.545 0.00 0.00 0.00 4.44
1727 6201 5.577945 CGAATGTTTTATTCAGGCAAAGCAT 59.422 36.000 0.00 0.00 37.22 3.79
1749 6223 5.624900 CACGCTTCAAAATTTCAAGATTCGA 59.375 36.000 12.08 0.00 0.00 3.71
1772 6246 3.816523 CACGGGCCTCTAACTTAAAAACA 59.183 43.478 0.84 0.00 0.00 2.83
1825 6306 3.754965 TGGCTGCAGTTTCTCATTTAGT 58.245 40.909 16.64 0.00 0.00 2.24
1831 6312 2.555325 CAATTCTGGCTGCAGTTTCTCA 59.445 45.455 16.64 5.73 0.00 3.27
1833 6314 1.891150 CCAATTCTGGCTGCAGTTTCT 59.109 47.619 16.64 0.00 35.39 2.52
1873 6354 3.441222 CCAATGATTTGTGTAGCTGCTGA 59.559 43.478 13.43 0.00 0.00 4.26
1874 6355 3.192001 ACCAATGATTTGTGTAGCTGCTG 59.808 43.478 13.43 0.00 0.00 4.41
1876 6357 3.504863 CACCAATGATTTGTGTAGCTGC 58.495 45.455 0.00 0.00 0.00 5.25
1893 6374 0.904649 ATCCAGACATCGAAGCACCA 59.095 50.000 0.00 0.00 0.00 4.17
1898 6379 6.674694 ATTCTCAAAATCCAGACATCGAAG 57.325 37.500 0.00 0.00 0.00 3.79
1917 6398 9.294614 GATTGCAGGAGGAAATCTTAATATTCT 57.705 33.333 0.00 0.00 0.00 2.40
1928 6419 2.309755 TGGTCAGATTGCAGGAGGAAAT 59.690 45.455 0.00 0.00 0.00 2.17
1946 6437 5.193679 GGTGAGTTTTCCTAGCATAATGGT 58.806 41.667 0.00 0.00 0.00 3.55
1991 6490 2.361438 GGAGTATGTGTAACGGAGGGAG 59.639 54.545 0.00 0.00 42.39 4.30
1992 6491 2.381911 GGAGTATGTGTAACGGAGGGA 58.618 52.381 0.00 0.00 42.39 4.20
1993 6492 1.411612 GGGAGTATGTGTAACGGAGGG 59.588 57.143 0.00 0.00 42.39 4.30
1994 6493 2.361438 GAGGGAGTATGTGTAACGGAGG 59.639 54.545 0.00 0.00 42.39 4.30
1995 6494 2.361438 GGAGGGAGTATGTGTAACGGAG 59.639 54.545 0.00 0.00 42.39 4.63
1998 6497 1.747355 ACGGAGGGAGTATGTGTAACG 59.253 52.381 0.00 0.00 42.39 3.18
1999 6498 2.100418 GGACGGAGGGAGTATGTGTAAC 59.900 54.545 0.00 0.00 37.35 2.50
2000 6499 2.024655 AGGACGGAGGGAGTATGTGTAA 60.025 50.000 0.00 0.00 0.00 2.41
2001 6500 1.567649 AGGACGGAGGGAGTATGTGTA 59.432 52.381 0.00 0.00 0.00 2.90
2002 6501 0.335361 AGGACGGAGGGAGTATGTGT 59.665 55.000 0.00 0.00 0.00 3.72
2003 6502 1.033574 GAGGACGGAGGGAGTATGTG 58.966 60.000 0.00 0.00 0.00 3.21
2004 6503 0.106116 GGAGGACGGAGGGAGTATGT 60.106 60.000 0.00 0.00 0.00 2.29
2007 6506 2.593978 CGGAGGACGGAGGGAGTA 59.406 66.667 0.00 0.00 39.42 2.59
2018 6517 4.186159 GACATTTATTTTCGGACGGAGGA 58.814 43.478 0.00 0.00 0.00 3.71
2019 6518 3.311596 GGACATTTATTTTCGGACGGAGG 59.688 47.826 0.00 0.00 0.00 4.30
2020 6519 3.311596 GGGACATTTATTTTCGGACGGAG 59.688 47.826 0.00 0.00 0.00 4.63
2021 6520 3.272581 GGGACATTTATTTTCGGACGGA 58.727 45.455 0.00 0.00 0.00 4.69
2022 6521 3.011119 TGGGACATTTATTTTCGGACGG 58.989 45.455 0.00 0.00 0.00 4.79
2024 6523 5.638596 AGTTGGGACATTTATTTTCGGAC 57.361 39.130 0.00 0.00 39.30 4.79
2025 6524 5.770663 TGAAGTTGGGACATTTATTTTCGGA 59.229 36.000 0.00 0.00 39.30 4.55
2026 6525 6.019779 TGAAGTTGGGACATTTATTTTCGG 57.980 37.500 0.00 0.00 39.30 4.30
2027 6526 6.920758 TGTTGAAGTTGGGACATTTATTTTCG 59.079 34.615 0.00 0.00 39.30 3.46
2028 6527 8.547894 GTTGTTGAAGTTGGGACATTTATTTTC 58.452 33.333 0.00 0.00 39.30 2.29
2029 6528 8.264347 AGTTGTTGAAGTTGGGACATTTATTTT 58.736 29.630 0.00 0.00 39.30 1.82
2030 6529 7.791029 AGTTGTTGAAGTTGGGACATTTATTT 58.209 30.769 0.00 0.00 39.30 1.40
2031 6530 7.360113 AGTTGTTGAAGTTGGGACATTTATT 57.640 32.000 0.00 0.00 39.30 1.40
2032 6531 6.976934 AGTTGTTGAAGTTGGGACATTTAT 57.023 33.333 0.00 0.00 39.30 1.40
2033 6532 6.568869 CAAGTTGTTGAAGTTGGGACATTTA 58.431 36.000 0.00 0.00 38.41 1.40
2034 6533 5.418676 CAAGTTGTTGAAGTTGGGACATTT 58.581 37.500 0.00 0.00 38.41 2.32
2035 6534 5.009854 CAAGTTGTTGAAGTTGGGACATT 57.990 39.130 0.00 0.00 38.41 2.71
2036 6535 4.654091 CAAGTTGTTGAAGTTGGGACAT 57.346 40.909 0.00 0.00 38.41 3.06
2042 6541 4.638421 TCTGTACCCAAGTTGTTGAAGTTG 59.362 41.667 1.45 0.00 40.78 3.16
2043 6542 4.850680 TCTGTACCCAAGTTGTTGAAGTT 58.149 39.130 1.45 0.00 35.46 2.66
2044 6543 4.497291 TCTGTACCCAAGTTGTTGAAGT 57.503 40.909 1.45 0.00 35.46 3.01
2045 6544 5.828299 TTTCTGTACCCAAGTTGTTGAAG 57.172 39.130 1.45 0.00 35.46 3.02
2046 6545 6.783708 AATTTCTGTACCCAAGTTGTTGAA 57.216 33.333 1.45 0.00 35.46 2.69
2047 6546 6.378564 TCAAATTTCTGTACCCAAGTTGTTGA 59.621 34.615 1.45 0.00 35.46 3.18
2048 6547 6.568869 TCAAATTTCTGTACCCAAGTTGTTG 58.431 36.000 1.45 0.00 29.74 3.33
2049 6548 6.783708 TCAAATTTCTGTACCCAAGTTGTT 57.216 33.333 1.45 0.00 29.74 2.83
2050 6549 6.976934 ATCAAATTTCTGTACCCAAGTTGT 57.023 33.333 1.45 0.00 29.74 3.32
2053 6552 8.903820 GCTTATATCAAATTTCTGTACCCAAGT 58.096 33.333 0.00 0.00 0.00 3.16
2054 6553 9.125026 AGCTTATATCAAATTTCTGTACCCAAG 57.875 33.333 0.00 0.00 0.00 3.61
2055 6554 8.902806 CAGCTTATATCAAATTTCTGTACCCAA 58.097 33.333 0.00 0.00 0.00 4.12
2056 6555 8.271458 TCAGCTTATATCAAATTTCTGTACCCA 58.729 33.333 0.00 0.00 0.00 4.51
2057 6556 8.677148 TCAGCTTATATCAAATTTCTGTACCC 57.323 34.615 0.00 0.00 0.00 3.69
2089 6588 7.686438 AAGATCAGTGCAAATACAACACATA 57.314 32.000 0.00 0.00 36.76 2.29
2104 6604 9.231297 TGGAGGAAGTAAATTTAAAGATCAGTG 57.769 33.333 0.00 0.00 0.00 3.66
2122 6622 6.923508 GGTTTTACATTTTGACTTGGAGGAAG 59.076 38.462 0.00 0.00 37.73 3.46
2125 6625 6.405278 AGGTTTTACATTTTGACTTGGAGG 57.595 37.500 0.00 0.00 0.00 4.30
2126 6626 8.716646 AAAAGGTTTTACATTTTGACTTGGAG 57.283 30.769 1.91 0.00 40.09 3.86
2128 6628 7.696035 GCAAAAAGGTTTTACATTTTGACTTGG 59.304 33.333 17.04 3.03 40.61 3.61
2130 6630 8.329203 TGCAAAAAGGTTTTACATTTTGACTT 57.671 26.923 17.04 0.00 40.61 3.01
2132 6632 7.747888 ACTGCAAAAAGGTTTTACATTTTGAC 58.252 30.769 17.04 8.60 40.61 3.18
2133 6633 7.913674 ACTGCAAAAAGGTTTTACATTTTGA 57.086 28.000 17.04 7.46 40.61 2.69
2134 6634 8.233190 TGAACTGCAAAAAGGTTTTACATTTTG 58.767 29.630 3.37 8.56 40.61 2.44
2135 6635 8.329203 TGAACTGCAAAAAGGTTTTACATTTT 57.671 26.923 0.00 0.00 42.90 1.82
2136 6636 7.913674 TGAACTGCAAAAAGGTTTTACATTT 57.086 28.000 0.00 0.00 33.08 2.32
2137 6637 7.913674 TTGAACTGCAAAAAGGTTTTACATT 57.086 28.000 0.00 0.00 32.46 2.71
2138 6638 7.913674 TTTGAACTGCAAAAAGGTTTTACAT 57.086 28.000 0.00 0.00 43.18 2.29
2150 6650 9.814899 TTCTCTGAAAATATTTTGAACTGCAAA 57.185 25.926 17.98 0.00 44.38 3.68
2151 6651 9.814899 TTTCTCTGAAAATATTTTGAACTGCAA 57.185 25.926 17.98 1.04 33.88 4.08
2152 6652 9.814899 TTTTCTCTGAAAATATTTTGAACTGCA 57.185 25.926 17.98 7.68 0.00 4.41
2185 6685 2.964174 CCTGCGCAAATCAGGCAA 59.036 55.556 13.05 0.00 43.88 4.52
2226 6726 6.139435 TGAAATAACATGTAGTTGTGCGTTG 58.861 36.000 0.00 0.00 41.50 4.10
2228 6728 5.468746 ACTGAAATAACATGTAGTTGTGCGT 59.531 36.000 0.00 0.00 41.50 5.24
2241 6741 8.663911 CCAAGCAAAAAGAAAACTGAAATAACA 58.336 29.630 0.00 0.00 0.00 2.41
2244 6744 6.259829 GGCCAAGCAAAAAGAAAACTGAAATA 59.740 34.615 0.00 0.00 0.00 1.40
2262 6762 2.353610 CCACATTCCCTGGCCAAGC 61.354 63.158 7.01 0.00 0.00 4.01
2292 6792 4.449743 GTGTCCTGCGATACTTTGTAACAA 59.550 41.667 0.00 0.00 0.00 2.83
2302 6802 0.179073 ATGGCTGTGTCCTGCGATAC 60.179 55.000 0.00 0.00 33.38 2.24
2303 6803 1.068588 GTATGGCTGTGTCCTGCGATA 59.931 52.381 0.00 0.00 35.94 2.92
2304 6804 0.179073 GTATGGCTGTGTCCTGCGAT 60.179 55.000 0.00 0.00 37.62 4.58
2306 6806 1.815421 GGTATGGCTGTGTCCTGCG 60.815 63.158 0.00 0.00 36.47 5.18
2312 6814 0.609131 GCCTTGTGGTATGGCTGTGT 60.609 55.000 0.00 0.00 44.17 3.72
2389 6891 5.418840 ACAATTTTGATGGCGGACTATCTTT 59.581 36.000 0.00 0.00 0.00 2.52
2395 6897 2.627699 ACAACAATTTTGATGGCGGACT 59.372 40.909 5.68 0.00 35.54 3.85
2400 6902 3.989817 GGAGACACAACAATTTTGATGGC 59.010 43.478 5.68 0.15 35.54 4.40
2402 6904 5.049474 TCTCGGAGACACAACAATTTTGATG 60.049 40.000 2.97 0.00 37.05 3.07
2435 6941 3.449377 TGGAGATGTATGGCGTTAGTTCA 59.551 43.478 0.00 0.00 0.00 3.18
2440 6946 1.269569 CGCTGGAGATGTATGGCGTTA 60.270 52.381 0.00 0.00 38.20 3.18
2488 6994 8.147704 TGATTCGGATGCAGATACTATGTAAAA 58.852 33.333 0.00 0.00 0.00 1.52
2514 7020 0.179100 CACAGGATGACGGCGATTCT 60.179 55.000 16.62 0.00 39.69 2.40
2565 7071 3.388350 ACAAGATAACGGGGAAGGATCTC 59.612 47.826 0.00 0.00 0.00 2.75
2598 7104 0.465705 AGTCGCCCTACATGTCCATG 59.534 55.000 0.00 5.74 44.15 3.66
2599 7105 0.753262 GAGTCGCCCTACATGTCCAT 59.247 55.000 0.00 0.00 0.00 3.41
2694 7211 6.012858 TGGACCATCACTTAGGTTTTAGATGT 60.013 38.462 0.00 0.00 38.50 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.