Multiple sequence alignment - TraesCS3B01G130200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G130200 chr3B 100.000 7734 0 0 1 7734 112457480 112465213 0.000000e+00 14283.0
1 TraesCS3B01G130200 chr3B 89.348 798 60 10 5213 5997 808083849 808084634 0.000000e+00 979.0
2 TraesCS3B01G130200 chr3B 82.593 810 101 19 5213 5997 33334257 33335051 0.000000e+00 678.0
3 TraesCS3B01G130200 chr3B 82.745 765 111 8 2 746 684854508 684853745 0.000000e+00 662.0
4 TraesCS3B01G130200 chr3B 83.908 348 42 7 5995 6340 758460936 758460601 3.480000e-83 320.0
5 TraesCS3B01G130200 chr3B 79.339 363 50 17 5995 6353 228671130 228671471 1.680000e-56 231.0
6 TraesCS3B01G130200 chr3B 88.770 187 15 4 5213 5397 76516775 76516957 2.810000e-54 224.0
7 TraesCS3B01G130200 chr3B 80.935 278 31 14 7468 7734 113504410 113504144 4.730000e-47 200.0
8 TraesCS3B01G130200 chr3B 95.902 122 4 1 7613 7734 112947844 112947964 6.120000e-46 196.0
9 TraesCS3B01G130200 chr3B 78.571 294 33 18 7468 7732 112835319 112835611 4.800000e-37 167.0
10 TraesCS3B01G130200 chr3D 93.760 4519 172 33 750 5202 68849144 68844670 0.000000e+00 6682.0
11 TraesCS3B01G130200 chr3D 86.763 695 52 17 6388 7054 68844632 68843950 0.000000e+00 737.0
12 TraesCS3B01G130200 chr3D 86.500 400 39 9 7343 7734 68843732 68843340 7.170000e-115 425.0
13 TraesCS3B01G130200 chr3D 84.388 237 31 5 6117 6349 579496674 579496440 2.170000e-55 228.0
14 TraesCS3B01G130200 chr3D 79.720 286 36 14 7468 7734 68431259 68430977 3.690000e-43 187.0
15 TraesCS3B01G130200 chr3D 79.167 288 38 16 7468 7734 68389868 68389582 6.170000e-41 180.0
16 TraesCS3B01G130200 chr3D 90.400 125 7 1 7615 7734 68833804 68833680 8.030000e-35 159.0
17 TraesCS3B01G130200 chr3D 100.000 28 0 0 7190 7217 569161672 569161645 1.400000e-02 52.8
18 TraesCS3B01G130200 chr3A 92.292 3036 146 35 756 3730 80419298 80416290 0.000000e+00 4229.0
19 TraesCS3B01G130200 chr3A 91.790 1486 69 15 3753 5215 80416304 80414849 0.000000e+00 2019.0
20 TraesCS3B01G130200 chr3A 87.694 707 48 12 6362 7053 80414848 80414166 0.000000e+00 787.0
21 TraesCS3B01G130200 chr3A 80.686 554 46 23 7234 7734 80414074 80413529 2.640000e-99 374.0
22 TraesCS3B01G130200 chr3A 93.388 121 7 1 7615 7734 80288922 80289042 2.220000e-40 178.0
23 TraesCS3B01G130200 chr6B 88.327 771 67 12 1 749 6877116 6877885 0.000000e+00 904.0
24 TraesCS3B01G130200 chr6B 87.617 751 84 8 1 746 511782251 511782997 0.000000e+00 863.0
25 TraesCS3B01G130200 chr6B 86.503 815 67 24 5216 5997 331037506 331038310 0.000000e+00 856.0
26 TraesCS3B01G130200 chr6B 86.792 424 28 14 5216 5619 712552794 712553209 1.530000e-121 448.0
27 TraesCS3B01G130200 chr1A 88.089 764 73 7 1 746 3663236 3663999 0.000000e+00 891.0
28 TraesCS3B01G130200 chr1B 87.811 763 71 9 1 744 424089113 424089872 0.000000e+00 874.0
29 TraesCS3B01G130200 chr1B 87.020 755 75 10 11 746 398388404 398387654 0.000000e+00 830.0
30 TraesCS3B01G130200 chr4B 87.013 770 81 10 1 751 6025734 6026503 0.000000e+00 850.0
31 TraesCS3B01G130200 chr4B 86.352 762 83 7 1 743 466995511 466996270 0.000000e+00 811.0
32 TraesCS3B01G130200 chr4B 85.752 765 88 10 1 746 376952275 376951513 0.000000e+00 789.0
33 TraesCS3B01G130200 chr4B 85.733 764 87 11 1 744 601940194 601939433 0.000000e+00 787.0
34 TraesCS3B01G130200 chr4B 85.038 782 82 19 5214 5966 619350301 619351076 0.000000e+00 763.0
35 TraesCS3B01G130200 chr4B 76.897 1173 191 53 5216 6354 603038834 603039960 6.680000e-165 592.0
36 TraesCS3B01G130200 chr5B 86.476 769 83 13 1 750 406582848 406582082 0.000000e+00 824.0
37 TraesCS3B01G130200 chr5B 85.640 766 91 5 1 747 621137004 621136239 0.000000e+00 787.0
38 TraesCS3B01G130200 chr2B 86.068 768 83 10 1 749 431745810 431745048 0.000000e+00 804.0
39 TraesCS3B01G130200 chr2B 83.694 785 92 25 5216 5997 26328157 26327406 0.000000e+00 708.0
40 TraesCS3B01G130200 chr2B 83.600 750 87 23 5216 5960 733865917 733866635 0.000000e+00 671.0
41 TraesCS3B01G130200 chr2B 86.701 579 50 6 5409 5963 695780130 695779555 1.100000e-172 617.0
42 TraesCS3B01G130200 chr5A 84.252 762 89 22 5206 5960 503792283 503793020 0.000000e+00 713.0
43 TraesCS3B01G130200 chr4A 82.673 808 93 23 5224 5997 690668299 690667505 0.000000e+00 673.0
44 TraesCS3B01G130200 chr2D 83.143 789 80 31 5216 5997 14634520 14633778 0.000000e+00 671.0
45 TraesCS3B01G130200 chr2D 81.921 354 46 13 5995 6344 142001149 142001488 4.570000e-72 283.0
46 TraesCS3B01G130200 chr2D 79.832 357 48 13 5995 6351 69276651 69276319 1.000000e-58 239.0
47 TraesCS3B01G130200 chrUn 82.178 808 101 25 5214 5997 154950681 154951469 0.000000e+00 654.0
48 TraesCS3B01G130200 chrUn 82.178 808 101 25 5214 5997 155034738 155035526 0.000000e+00 654.0
49 TraesCS3B01G130200 chr6D 81.742 597 70 31 5216 5789 118987767 118988347 5.470000e-126 462.0
50 TraesCS3B01G130200 chr6D 81.918 365 38 15 5995 6354 118988655 118988996 4.570000e-72 283.0
51 TraesCS3B01G130200 chr2A 89.408 321 22 6 1125 1442 274630 274941 2.020000e-105 394.0
52 TraesCS3B01G130200 chr7D 80.886 361 44 14 5995 6351 593539883 593540222 2.140000e-65 261.0
53 TraesCS3B01G130200 chr4D 89.674 184 17 2 5214 5397 420966844 420967025 4.670000e-57 233.0
54 TraesCS3B01G130200 chr5D 78.453 362 49 13 5995 6352 438181367 438181703 7.860000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G130200 chr3B 112457480 112465213 7733 False 14283.000000 14283 100.000000 1 7734 1 chr3B.!!$F3 7733
1 TraesCS3B01G130200 chr3B 808083849 808084634 785 False 979.000000 979 89.348000 5213 5997 1 chr3B.!!$F7 784
2 TraesCS3B01G130200 chr3B 33334257 33335051 794 False 678.000000 678 82.593000 5213 5997 1 chr3B.!!$F1 784
3 TraesCS3B01G130200 chr3B 684853745 684854508 763 True 662.000000 662 82.745000 2 746 1 chr3B.!!$R2 744
4 TraesCS3B01G130200 chr3D 68843340 68849144 5804 True 2614.666667 6682 89.007667 750 7734 3 chr3D.!!$R6 6984
5 TraesCS3B01G130200 chr3A 80413529 80419298 5769 True 1852.250000 4229 88.115500 756 7734 4 chr3A.!!$R1 6978
6 TraesCS3B01G130200 chr6B 6877116 6877885 769 False 904.000000 904 88.327000 1 749 1 chr6B.!!$F1 748
7 TraesCS3B01G130200 chr6B 511782251 511782997 746 False 863.000000 863 87.617000 1 746 1 chr6B.!!$F3 745
8 TraesCS3B01G130200 chr6B 331037506 331038310 804 False 856.000000 856 86.503000 5216 5997 1 chr6B.!!$F2 781
9 TraesCS3B01G130200 chr1A 3663236 3663999 763 False 891.000000 891 88.089000 1 746 1 chr1A.!!$F1 745
10 TraesCS3B01G130200 chr1B 424089113 424089872 759 False 874.000000 874 87.811000 1 744 1 chr1B.!!$F1 743
11 TraesCS3B01G130200 chr1B 398387654 398388404 750 True 830.000000 830 87.020000 11 746 1 chr1B.!!$R1 735
12 TraesCS3B01G130200 chr4B 6025734 6026503 769 False 850.000000 850 87.013000 1 751 1 chr4B.!!$F1 750
13 TraesCS3B01G130200 chr4B 466995511 466996270 759 False 811.000000 811 86.352000 1 743 1 chr4B.!!$F2 742
14 TraesCS3B01G130200 chr4B 376951513 376952275 762 True 789.000000 789 85.752000 1 746 1 chr4B.!!$R1 745
15 TraesCS3B01G130200 chr4B 601939433 601940194 761 True 787.000000 787 85.733000 1 744 1 chr4B.!!$R2 743
16 TraesCS3B01G130200 chr4B 619350301 619351076 775 False 763.000000 763 85.038000 5214 5966 1 chr4B.!!$F4 752
17 TraesCS3B01G130200 chr4B 603038834 603039960 1126 False 592.000000 592 76.897000 5216 6354 1 chr4B.!!$F3 1138
18 TraesCS3B01G130200 chr5B 406582082 406582848 766 True 824.000000 824 86.476000 1 750 1 chr5B.!!$R1 749
19 TraesCS3B01G130200 chr5B 621136239 621137004 765 True 787.000000 787 85.640000 1 747 1 chr5B.!!$R2 746
20 TraesCS3B01G130200 chr2B 431745048 431745810 762 True 804.000000 804 86.068000 1 749 1 chr2B.!!$R2 748
21 TraesCS3B01G130200 chr2B 26327406 26328157 751 True 708.000000 708 83.694000 5216 5997 1 chr2B.!!$R1 781
22 TraesCS3B01G130200 chr2B 733865917 733866635 718 False 671.000000 671 83.600000 5216 5960 1 chr2B.!!$F1 744
23 TraesCS3B01G130200 chr2B 695779555 695780130 575 True 617.000000 617 86.701000 5409 5963 1 chr2B.!!$R3 554
24 TraesCS3B01G130200 chr5A 503792283 503793020 737 False 713.000000 713 84.252000 5206 5960 1 chr5A.!!$F1 754
25 TraesCS3B01G130200 chr4A 690667505 690668299 794 True 673.000000 673 82.673000 5224 5997 1 chr4A.!!$R1 773
26 TraesCS3B01G130200 chr2D 14633778 14634520 742 True 671.000000 671 83.143000 5216 5997 1 chr2D.!!$R1 781
27 TraesCS3B01G130200 chrUn 154950681 154951469 788 False 654.000000 654 82.178000 5214 5997 1 chrUn.!!$F1 783
28 TraesCS3B01G130200 chrUn 155034738 155035526 788 False 654.000000 654 82.178000 5214 5997 1 chrUn.!!$F2 783
29 TraesCS3B01G130200 chr6D 118987767 118988996 1229 False 372.500000 462 81.830000 5216 6354 2 chr6D.!!$F1 1138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 427 0.879765 GACCTCGACGAAGACAAGGA 59.120 55.000 0.00 0.00 0.00 3.36 F
1755 1833 0.035056 AATAGTGCCCTCAGGTGTGC 60.035 55.000 0.00 0.00 34.57 4.57 F
3230 3329 0.384669 GAGCAGCTTTGATGCCCATC 59.615 55.000 0.00 1.35 44.97 3.51 F
4192 4295 1.077212 GCATGACCATGGCCTCTGT 60.077 57.895 13.04 0.00 39.16 3.41 F
4910 5032 1.066143 CCAGGTATTGTCAGAGGCGTT 60.066 52.381 0.00 0.00 0.00 4.84 F
5646 5946 0.316204 GAAGAACGACTTCCCACCGA 59.684 55.000 13.16 0.00 46.48 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1893 0.598158 CAAACATTGCAGTGCGCCTT 60.598 50.0 11.20 0.00 41.33 4.35 R
3734 3834 0.550914 TGCACTGGGTCTGTCCTTTT 59.449 50.0 0.00 0.00 36.25 2.27 R
4772 4879 0.755327 AGCCCAACACACCAAGGAAC 60.755 55.0 0.00 0.00 0.00 3.62 R
5558 5858 0.826715 ACACCACCGAGGATGATGAG 59.173 55.0 0.00 0.00 41.22 2.90 R
6690 7137 0.179100 AGAATCGCCGTCATCCTGTG 60.179 55.0 0.00 0.00 0.00 3.66 R
6949 7402 0.105760 TCTTTTTGCTTGGCCAGGGA 60.106 50.0 17.71 11.73 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 4.166011 GAACACATCGCCTGCGGC 62.166 66.667 12.06 9.20 46.75 6.53
103 105 2.210013 AGGAGCAGCACCGTTGAGA 61.210 57.895 2.85 0.00 0.00 3.27
124 126 2.449730 AGGGATCACCGAGGAACCTATA 59.550 50.000 0.00 0.00 46.96 1.31
134 136 0.901580 GGAACCTATATCCGGGCCGA 60.902 60.000 30.79 14.42 0.00 5.54
167 170 2.047655 CAGCCGACCGCCTTGTAA 60.048 61.111 0.00 0.00 38.78 2.41
292 296 4.284550 GCAGCTGGGTTCCCACCA 62.285 66.667 17.12 0.00 46.43 4.17
422 427 0.879765 GACCTCGACGAAGACAAGGA 59.120 55.000 0.00 0.00 0.00 3.36
509 515 4.360405 GCAATGGTGGTCGGGGGT 62.360 66.667 0.00 0.00 0.00 4.95
518 525 4.716977 GTCGGGGGTGGGAGGAGT 62.717 72.222 0.00 0.00 0.00 3.85
527 547 4.097361 GGGAGGAGTGGGAACGGC 62.097 72.222 0.00 0.00 0.00 5.68
529 549 4.452733 GAGGAGTGGGAACGGCCG 62.453 72.222 26.86 26.86 37.63 6.13
673 696 0.974010 AGTCTGTTCGGGCGGGATTA 60.974 55.000 0.00 0.00 0.00 1.75
706 731 2.159234 GCATTTTGGCGCTTATTTTGCA 59.841 40.909 7.64 0.00 0.00 4.08
707 732 3.364764 GCATTTTGGCGCTTATTTTGCAA 60.365 39.130 7.64 0.00 0.00 4.08
713 738 3.253230 GGCGCTTATTTTGCAAGTCAAT 58.747 40.909 7.64 0.00 34.12 2.57
751 776 5.835819 TCTGCTAGAGTTGCTCTTATATGGT 59.164 40.000 3.87 0.00 41.50 3.55
752 777 5.847304 TGCTAGAGTTGCTCTTATATGGTG 58.153 41.667 3.87 0.00 41.50 4.17
753 778 5.598417 TGCTAGAGTTGCTCTTATATGGTGA 59.402 40.000 3.87 0.00 41.50 4.02
754 779 6.155827 GCTAGAGTTGCTCTTATATGGTGAG 58.844 44.000 3.87 0.00 41.50 3.51
972 1030 1.208844 TCTCCTCCTCGACCCTCTGT 61.209 60.000 0.00 0.00 0.00 3.41
1123 1181 4.637102 CCAAAAGCCCTGCCCCCA 62.637 66.667 0.00 0.00 0.00 4.96
1218 1276 0.179026 CCGACCTCTCATCTCCGGTA 60.179 60.000 0.00 0.00 33.02 4.02
1233 1291 2.633509 GGTAGTCCTCGTGTGCGGT 61.634 63.158 0.00 0.00 38.89 5.68
1301 1359 0.038744 CTGCTCCCCAGGTGAACATT 59.961 55.000 0.00 0.00 37.93 2.71
1325 1383 5.584649 TGGAATCCAATTCATGACGACTAAC 59.415 40.000 0.00 0.00 41.03 2.34
1335 1393 5.877031 TCATGACGACTAACTTAGCACTAC 58.123 41.667 0.00 0.00 0.00 2.73
1337 1395 5.542616 TGACGACTAACTTAGCACTACTC 57.457 43.478 0.00 0.00 0.00 2.59
1367 1425 4.235360 GTGTTATCTAACTGCTCGTGTGT 58.765 43.478 2.11 0.00 37.12 3.72
1374 1432 0.104120 ACTGCTCGTGTGTTGTGCTA 59.896 50.000 0.00 0.00 0.00 3.49
1434 1492 3.706373 GGGCAGCCGGAGTTCTCA 61.706 66.667 5.05 0.00 0.00 3.27
1455 1513 1.076923 GCCGGGGTGTCTCTCTCTA 60.077 63.158 2.18 0.00 0.00 2.43
1476 1534 4.046938 ACACATCGTCGATGAAGCTATT 57.953 40.909 35.44 13.37 42.09 1.73
1483 1541 2.286294 GTCGATGAAGCTATTGCAGGTG 59.714 50.000 1.12 0.00 42.74 4.00
1540 1599 6.661805 GGAGAGGATTTTATGTTGGGTGTTAA 59.338 38.462 0.00 0.00 0.00 2.01
1656 1725 4.364415 TCTCGCTCTTTCTTCTAGCTTC 57.636 45.455 0.00 0.00 34.03 3.86
1657 1726 4.013728 TCTCGCTCTTTCTTCTAGCTTCT 58.986 43.478 0.00 0.00 34.03 2.85
1700 1778 9.990868 ATTATTACTTGGGTTTAGGAATCTGTT 57.009 29.630 0.00 0.00 29.19 3.16
1755 1833 0.035056 AATAGTGCCCTCAGGTGTGC 60.035 55.000 0.00 0.00 34.57 4.57
1837 1930 8.440059 CAATGTTTGAATTCACATGAGAATTGG 58.560 33.333 28.52 4.18 45.51 3.16
1879 1972 3.084039 TGCTTTAGGTGCTTCAGAATGG 58.916 45.455 0.00 0.00 36.16 3.16
1939 2033 3.165071 CCTGGGATTGCAACTTTAGGTT 58.835 45.455 0.00 0.00 38.93 3.50
2138 2232 3.742369 CACCTTGGAAAATGTGTCAATGC 59.258 43.478 0.00 0.00 0.00 3.56
2139 2233 3.642848 ACCTTGGAAAATGTGTCAATGCT 59.357 39.130 0.00 0.00 0.00 3.79
2152 2246 3.006430 TGTCAATGCTCAGAACGACCTAA 59.994 43.478 0.00 0.00 0.00 2.69
2239 2333 9.519191 TCAACAATCAATATCCTTTTCTCTTCA 57.481 29.630 0.00 0.00 0.00 3.02
2243 2337 9.962783 CAATCAATATCCTTTTCTCTTCAATCC 57.037 33.333 0.00 0.00 0.00 3.01
2244 2338 9.933240 AATCAATATCCTTTTCTCTTCAATCCT 57.067 29.630 0.00 0.00 0.00 3.24
2265 2359 6.068010 TCCTTTGCTCACCAATTCTCTTAAA 58.932 36.000 0.00 0.00 32.49 1.52
2359 2453 5.458041 AGTCTTTGGAATTGTCAATGTGG 57.542 39.130 0.00 0.00 0.00 4.17
2409 2504 6.856895 AGATTCCGATGAAGAAACATTTTCC 58.143 36.000 0.00 0.00 33.05 3.13
2410 2505 6.434028 AGATTCCGATGAAGAAACATTTTCCA 59.566 34.615 0.00 0.00 33.05 3.53
3011 3107 7.224949 AGTTGAGTAGCTAAAAGACAGTCAAAC 59.775 37.037 2.66 0.00 32.10 2.93
3216 3315 1.902508 TGGTTTGAGTCCTAGGAGCAG 59.097 52.381 13.15 0.00 0.00 4.24
3230 3329 0.384669 GAGCAGCTTTGATGCCCATC 59.615 55.000 0.00 1.35 44.97 3.51
3400 3500 5.048083 TGAACAATGAGTACTGAATTTGCCC 60.048 40.000 0.00 0.00 0.00 5.36
3454 3554 4.008933 GTGGGCGCCTCTGTCTGT 62.009 66.667 28.56 0.00 0.00 3.41
3581 3681 1.448985 TTCCAGTCGTTTATGCCTGC 58.551 50.000 0.00 0.00 0.00 4.85
3621 3721 4.517453 TGGTCCAAATACTTGTGCAACTAC 59.483 41.667 0.00 0.00 38.04 2.73
3657 3757 3.812609 TGTTGTCTTGCGCTTCTTTGATA 59.187 39.130 9.73 0.00 0.00 2.15
3669 3769 5.559035 CGCTTCTTTGATAAATAAGCTCCCG 60.559 44.000 16.84 4.06 44.02 5.14
4008 4109 2.367567 TGCGAGGTTAGTTGTCTTTCCT 59.632 45.455 0.00 0.00 0.00 3.36
4022 4123 3.935828 GTCTTTCCTGTCAACTATGCTCC 59.064 47.826 0.00 0.00 0.00 4.70
4117 4220 3.624861 CAGGCATCAACACCTCAGTAATC 59.375 47.826 0.00 0.00 32.56 1.75
4192 4295 1.077212 GCATGACCATGGCCTCTGT 60.077 57.895 13.04 0.00 39.16 3.41
4266 4369 2.828520 CCTCTGAGTTAGCTGAAGGTCA 59.171 50.000 3.66 0.00 0.00 4.02
4272 4375 4.777896 TGAGTTAGCTGAAGGTCATTAGGT 59.222 41.667 0.00 0.00 0.00 3.08
4467 4570 9.434420 GAGCTAGCTATTGAATTACTTCATGAT 57.566 33.333 19.38 0.00 40.95 2.45
4490 4593 9.632807 TGATTCATTAGTTTGATTTTTAACCCG 57.367 29.630 0.00 0.00 0.00 5.28
4601 4708 3.002348 GTGGAACGTGAAAAGTGGAAGAG 59.998 47.826 0.00 0.00 0.00 2.85
4640 4747 5.885912 TCTAGGTTTTTGAAAGCACTGAACT 59.114 36.000 5.54 0.00 0.00 3.01
4754 4861 3.207265 TGGCAAGTAGTTGTGACACAT 57.793 42.857 9.55 0.00 35.92 3.21
4759 4866 3.751479 AGTAGTTGTGACACATCTGCA 57.249 42.857 26.48 10.10 34.39 4.41
4910 5032 1.066143 CCAGGTATTGTCAGAGGCGTT 60.066 52.381 0.00 0.00 0.00 4.84
4915 5037 1.089920 ATTGTCAGAGGCGTTGATGC 58.910 50.000 0.00 0.00 0.00 3.91
5177 5302 6.116126 AGCATTAGAGTTTGTTATGTCCTCC 58.884 40.000 0.00 0.00 0.00 4.30
5195 5320 8.108378 TGTCCTCCCTACCATAATCAATTTTA 57.892 34.615 0.00 0.00 0.00 1.52
5332 5465 1.707239 CGGCCGCGGTAAATTTAGCA 61.707 55.000 28.70 0.00 0.00 3.49
5539 5818 3.384146 GCAACTACTAGAACCTACTCCCC 59.616 52.174 0.00 0.00 0.00 4.81
5558 5858 1.231928 GTCCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
5646 5946 0.316204 GAAGAACGACTTCCCACCGA 59.684 55.000 13.16 0.00 46.48 4.69
6078 6500 4.802051 CATGGTGGCTCGGTGGGG 62.802 72.222 0.00 0.00 0.00 4.96
6129 6551 4.767255 AAGCGGCAGAGGAAGCGG 62.767 66.667 1.45 0.00 35.67 5.52
6133 6555 4.760047 GGCAGAGGAAGCGGCGAA 62.760 66.667 12.98 0.00 0.00 4.70
6134 6556 3.191539 GCAGAGGAAGCGGCGAAG 61.192 66.667 12.98 0.00 0.00 3.79
6135 6557 2.573869 CAGAGGAAGCGGCGAAGA 59.426 61.111 12.98 0.00 0.00 2.87
6136 6558 1.079819 CAGAGGAAGCGGCGAAGAA 60.080 57.895 12.98 0.00 0.00 2.52
6137 6559 1.080995 CAGAGGAAGCGGCGAAGAAG 61.081 60.000 12.98 0.00 0.00 2.85
6138 6560 2.435059 AGGAAGCGGCGAAGAAGC 60.435 61.111 12.98 0.00 0.00 3.86
6164 6586 4.969196 ACGCGTGGCAGTGTGGAG 62.969 66.667 12.93 0.00 33.08 3.86
6174 6596 3.717294 GTGTGGAGGGCGATGGGT 61.717 66.667 0.00 0.00 0.00 4.51
6178 6600 2.844839 GGAGGGCGATGGGTAGCT 60.845 66.667 0.00 0.00 0.00 3.32
6239 6661 2.621000 GTCAAATCTAGCGCGCGG 59.379 61.111 33.06 22.17 0.00 6.46
6274 6698 2.094910 CGCGCGCAATCGTTTACA 59.905 55.556 32.61 0.00 38.14 2.41
6330 6756 2.808181 AAAACGTCCCCCGCGCTAAT 62.808 55.000 5.56 0.00 41.42 1.73
6332 6758 1.958902 AACGTCCCCCGCGCTAATAA 61.959 55.000 5.56 0.00 41.42 1.40
6344 6770 2.289820 GCGCTAATAAGCCAGTTTACCC 59.710 50.000 0.00 0.00 46.68 3.69
6363 6789 3.903207 GCGCGCGTGCTCTTAGTC 61.903 66.667 35.43 6.30 39.65 2.59
6364 6790 3.598562 CGCGCGTGCTCTTAGTCG 61.599 66.667 24.19 0.00 39.65 4.18
6371 6797 2.177977 CGTGCTCTTAGTCGCAAGTAG 58.822 52.381 1.26 0.00 37.97 2.57
6385 6811 5.860182 GTCGCAAGTAGTGTATACTTTGTCA 59.140 40.000 4.17 0.00 38.36 3.58
6475 6902 2.125912 GCCACGAGCACACGAGAT 60.126 61.111 5.12 0.00 42.97 2.75
6529 6963 6.012858 TGGACCATCACTTAGGTTTTAGATGT 60.013 38.462 0.00 0.00 38.50 3.06
6624 7071 0.753262 GAGTCGCCCTACATGTCCAT 59.247 55.000 0.00 0.00 0.00 3.41
6625 7072 0.465705 AGTCGCCCTACATGTCCATG 59.534 55.000 0.00 5.74 44.15 3.66
6658 7105 3.388350 ACAAGATAACGGGGAAGGATCTC 59.612 47.826 0.00 0.00 0.00 2.75
6709 7156 0.179100 CACAGGATGACGGCGATTCT 60.179 55.000 16.62 0.00 39.69 2.40
6735 7182 8.147704 TGATTCGGATGCAGATACTATGTAAAA 58.852 33.333 0.00 0.00 0.00 1.52
6783 7230 1.269569 CGCTGGAGATGTATGGCGTTA 60.270 52.381 0.00 0.00 38.20 3.18
6788 7235 3.449377 TGGAGATGTATGGCGTTAGTTCA 59.551 43.478 0.00 0.00 0.00 3.18
6821 7272 5.049474 TCTCGGAGACACAACAATTTTGATG 60.049 40.000 2.97 0.00 37.05 3.07
6823 7274 3.989817 GGAGACACAACAATTTTGATGGC 59.010 43.478 5.68 0.15 35.54 4.40
6828 7279 2.627699 ACAACAATTTTGATGGCGGACT 59.372 40.909 5.68 0.00 35.54 3.85
6834 7285 5.418840 ACAATTTTGATGGCGGACTATCTTT 59.581 36.000 0.00 0.00 0.00 2.52
6911 7362 0.609131 GCCTTGTGGTATGGCTGTGT 60.609 55.000 0.00 0.00 44.17 3.72
6917 7368 1.815421 GGTATGGCTGTGTCCTGCG 60.815 63.158 0.00 0.00 36.47 5.18
6931 7384 4.449743 GTGTCCTGCGATACTTTGTAACAA 59.550 41.667 0.00 0.00 0.00 2.83
6961 7414 2.353610 CCACATTCCCTGGCCAAGC 61.354 63.158 7.01 0.00 0.00 4.01
6979 7432 6.259829 GGCCAAGCAAAAAGAAAACTGAAATA 59.740 34.615 0.00 0.00 0.00 1.40
6982 7435 8.663911 CCAAGCAAAAAGAAAACTGAAATAACA 58.336 29.630 0.00 0.00 0.00 2.41
6995 7448 5.468746 ACTGAAATAACATGTAGTTGTGCGT 59.531 36.000 0.00 0.00 41.50 5.24
6997 7450 6.139435 TGAAATAACATGTAGTTGTGCGTTG 58.861 36.000 0.00 0.00 41.50 4.10
7038 7491 2.964174 CCTGCGCAAATCAGGCAA 59.036 55.556 13.05 0.00 43.88 4.52
7071 7524 9.814899 TTTTCTCTGAAAATATTTTGAACTGCA 57.185 25.926 17.98 7.68 0.00 4.41
7072 7525 9.814899 TTTCTCTGAAAATATTTTGAACTGCAA 57.185 25.926 17.98 1.04 33.88 4.08
7073 7526 9.814899 TTCTCTGAAAATATTTTGAACTGCAAA 57.185 25.926 17.98 0.00 44.38 3.68
7085 7538 7.913674 TTTGAACTGCAAAAAGGTTTTACAT 57.086 28.000 0.00 0.00 43.18 2.29
7086 7539 7.913674 TTGAACTGCAAAAAGGTTTTACATT 57.086 28.000 0.00 0.00 32.46 2.71
7087 7540 7.913674 TGAACTGCAAAAAGGTTTTACATTT 57.086 28.000 0.00 0.00 33.08 2.32
7088 7541 8.329203 TGAACTGCAAAAAGGTTTTACATTTT 57.671 26.923 0.00 0.00 42.90 1.82
7089 7542 8.233190 TGAACTGCAAAAAGGTTTTACATTTTG 58.767 29.630 3.37 8.56 40.61 2.44
7090 7543 7.913674 ACTGCAAAAAGGTTTTACATTTTGA 57.086 28.000 17.04 7.46 40.61 2.69
7091 7544 7.747888 ACTGCAAAAAGGTTTTACATTTTGAC 58.252 30.769 17.04 8.60 40.61 3.18
7092 7545 7.606073 ACTGCAAAAAGGTTTTACATTTTGACT 59.394 29.630 17.04 0.00 40.61 3.41
7093 7546 8.329203 TGCAAAAAGGTTTTACATTTTGACTT 57.671 26.923 17.04 0.00 40.61 3.01
7094 7547 8.233190 TGCAAAAAGGTTTTACATTTTGACTTG 58.767 29.630 17.04 8.45 40.61 3.16
7095 7548 7.696035 GCAAAAAGGTTTTACATTTTGACTTGG 59.304 33.333 17.04 3.03 40.61 3.61
7097 7550 8.716646 AAAAGGTTTTACATTTTGACTTGGAG 57.283 30.769 1.91 0.00 40.09 3.86
7098 7551 6.405278 AGGTTTTACATTTTGACTTGGAGG 57.595 37.500 0.00 0.00 0.00 4.30
7101 7554 6.923508 GGTTTTACATTTTGACTTGGAGGAAG 59.076 38.462 0.00 0.00 37.73 3.46
7119 7572 9.231297 TGGAGGAAGTAAATTTAAAGATCAGTG 57.769 33.333 0.00 0.00 0.00 3.66
7134 7588 7.686438 AAGATCAGTGCAAATACAACACATA 57.314 32.000 0.00 0.00 36.76 2.29
7166 7620 8.677148 TCAGCTTATATCAAATTTCTGTACCC 57.323 34.615 0.00 0.00 0.00 3.69
7167 7621 8.271458 TCAGCTTATATCAAATTTCTGTACCCA 58.729 33.333 0.00 0.00 0.00 4.51
7170 7624 8.903820 GCTTATATCAAATTTCTGTACCCAAGT 58.096 33.333 0.00 0.00 0.00 3.16
7173 7627 6.976934 ATCAAATTTCTGTACCCAAGTTGT 57.023 33.333 1.45 0.00 29.74 3.32
7175 7629 6.568869 TCAAATTTCTGTACCCAAGTTGTTG 58.431 36.000 1.45 0.00 29.74 3.33
7176 7630 6.378564 TCAAATTTCTGTACCCAAGTTGTTGA 59.621 34.615 1.45 0.00 35.46 3.18
7177 7631 6.783708 AATTTCTGTACCCAAGTTGTTGAA 57.216 33.333 1.45 0.00 35.46 2.69
7178 7632 5.828299 TTTCTGTACCCAAGTTGTTGAAG 57.172 39.130 1.45 0.00 35.46 3.02
7180 7634 4.850680 TCTGTACCCAAGTTGTTGAAGTT 58.149 39.130 1.45 0.00 35.46 2.66
7181 7635 4.638421 TCTGTACCCAAGTTGTTGAAGTTG 59.362 41.667 1.45 0.00 40.78 3.16
7187 7641 4.654091 CAAGTTGTTGAAGTTGGGACAT 57.346 40.909 0.00 0.00 38.41 3.06
7189 7643 5.418676 CAAGTTGTTGAAGTTGGGACATTT 58.581 37.500 0.00 0.00 38.41 2.32
7190 7644 6.568869 CAAGTTGTTGAAGTTGGGACATTTA 58.431 36.000 0.00 0.00 38.41 1.40
7192 7646 7.360113 AGTTGTTGAAGTTGGGACATTTATT 57.640 32.000 0.00 0.00 39.30 1.40
7193 7647 7.791029 AGTTGTTGAAGTTGGGACATTTATTT 58.209 30.769 0.00 0.00 39.30 1.40
7194 7648 8.264347 AGTTGTTGAAGTTGGGACATTTATTTT 58.736 29.630 0.00 0.00 39.30 1.82
7195 7649 8.547894 GTTGTTGAAGTTGGGACATTTATTTTC 58.452 33.333 0.00 0.00 39.30 2.29
7196 7650 6.920758 TGTTGAAGTTGGGACATTTATTTTCG 59.079 34.615 0.00 0.00 39.30 3.46
7199 7653 5.638596 AGTTGGGACATTTATTTTCGGAC 57.361 39.130 0.00 0.00 39.30 4.79
7200 7654 4.155280 AGTTGGGACATTTATTTTCGGACG 59.845 41.667 0.00 0.00 39.30 4.79
7201 7655 3.011119 TGGGACATTTATTTTCGGACGG 58.989 45.455 0.00 0.00 0.00 4.79
7202 7656 3.272581 GGGACATTTATTTTCGGACGGA 58.727 45.455 0.00 0.00 0.00 4.69
7203 7657 3.311596 GGGACATTTATTTTCGGACGGAG 59.688 47.826 0.00 0.00 0.00 4.63
7204 7658 3.311596 GGACATTTATTTTCGGACGGAGG 59.688 47.826 0.00 0.00 0.00 4.30
7205 7659 4.186159 GACATTTATTTTCGGACGGAGGA 58.814 43.478 0.00 0.00 0.00 3.71
7206 7660 3.937079 ACATTTATTTTCGGACGGAGGAC 59.063 43.478 0.00 0.00 0.00 3.85
7216 7670 2.593978 CGGAGGACGGAGGGAGTA 59.406 66.667 0.00 0.00 39.42 2.59
7217 7671 1.150992 CGGAGGACGGAGGGAGTAT 59.849 63.158 0.00 0.00 39.42 2.12
7218 7672 1.173444 CGGAGGACGGAGGGAGTATG 61.173 65.000 0.00 0.00 39.42 2.39
7219 7673 0.106116 GGAGGACGGAGGGAGTATGT 60.106 60.000 0.00 0.00 0.00 2.29
7220 7674 1.033574 GAGGACGGAGGGAGTATGTG 58.966 60.000 0.00 0.00 0.00 3.21
7221 7675 0.335361 AGGACGGAGGGAGTATGTGT 59.665 55.000 0.00 0.00 0.00 3.72
7222 7676 1.567649 AGGACGGAGGGAGTATGTGTA 59.432 52.381 0.00 0.00 0.00 2.90
7223 7677 2.024655 AGGACGGAGGGAGTATGTGTAA 60.025 50.000 0.00 0.00 0.00 2.41
7224 7678 2.100418 GGACGGAGGGAGTATGTGTAAC 59.900 54.545 0.00 0.00 37.35 2.50
7225 7679 1.747355 ACGGAGGGAGTATGTGTAACG 59.253 52.381 0.00 0.00 42.39 3.18
7226 7680 1.066605 CGGAGGGAGTATGTGTAACGG 59.933 57.143 0.00 0.00 42.39 4.44
7227 7681 2.381911 GGAGGGAGTATGTGTAACGGA 58.618 52.381 0.00 0.00 42.39 4.69
7228 7682 2.361438 GGAGGGAGTATGTGTAACGGAG 59.639 54.545 0.00 0.00 42.39 4.63
7229 7683 2.361438 GAGGGAGTATGTGTAACGGAGG 59.639 54.545 0.00 0.00 42.39 4.30
7230 7684 1.411612 GGGAGTATGTGTAACGGAGGG 59.588 57.143 0.00 0.00 42.39 4.30
7231 7685 2.381911 GGAGTATGTGTAACGGAGGGA 58.618 52.381 0.00 0.00 42.39 4.20
7232 7686 2.361438 GGAGTATGTGTAACGGAGGGAG 59.639 54.545 0.00 0.00 42.39 4.30
7277 7736 5.193679 GGTGAGTTTTCCTAGCATAATGGT 58.806 41.667 0.00 0.00 0.00 3.55
7295 7755 2.309755 TGGTCAGATTGCAGGAGGAAAT 59.690 45.455 0.00 0.00 0.00 2.17
7306 7776 9.294614 GATTGCAGGAGGAAATCTTAATATTCT 57.705 33.333 0.00 0.00 0.00 2.40
7325 7795 6.674694 ATTCTCAAAATCCAGACATCGAAG 57.325 37.500 0.00 0.00 0.00 3.79
7330 7800 0.904649 ATCCAGACATCGAAGCACCA 59.095 50.000 0.00 0.00 0.00 4.17
7340 7810 3.557577 TCGAAGCACCAATGATTTGTG 57.442 42.857 5.13 5.13 37.00 3.33
7343 7813 4.154015 TCGAAGCACCAATGATTTGTGTAG 59.846 41.667 10.53 1.77 37.00 2.74
7347 7817 3.504863 CACCAATGATTTGTGTAGCTGC 58.495 45.455 0.00 0.00 0.00 5.25
7349 7819 3.192001 ACCAATGATTTGTGTAGCTGCTG 59.808 43.478 13.43 0.00 0.00 4.41
7390 7860 1.891150 CCAATTCTGGCTGCAGTTTCT 59.109 47.619 16.64 0.00 35.39 2.52
7392 7862 2.555325 CAATTCTGGCTGCAGTTTCTCA 59.445 45.455 16.64 5.73 0.00 3.27
7398 7868 3.754965 TGGCTGCAGTTTCTCATTTAGT 58.245 40.909 16.64 0.00 0.00 2.24
7451 7928 3.816523 CACGGGCCTCTAACTTAAAAACA 59.183 43.478 0.84 0.00 0.00 2.83
7474 7951 5.624900 CACGCTTCAAAATTTCAAGATTCGA 59.375 36.000 12.08 0.00 0.00 3.71
7496 7973 5.577945 CGAATGTTTTATTCAGGCAAAGCAT 59.422 36.000 0.00 0.00 37.22 3.79
7572 8049 2.158445 ACAGACAGTACACACCCTCTCT 60.158 50.000 0.00 0.00 0.00 3.10
7584 8061 2.621055 CACCCTCTCTCTCAGATAACCG 59.379 54.545 0.00 0.00 0.00 4.44
7591 8071 5.299148 TCTCTCTCAGATAACCGTACTAGC 58.701 45.833 0.00 0.00 0.00 3.42
7623 8130 1.546476 GAGGACAGACACTACCCACTG 59.454 57.143 0.00 0.00 36.58 3.66
7681 8193 2.670148 GGCGACCTGGACCTGGATT 61.670 63.158 23.36 2.17 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 2.031012 TCAACGGTGCTGCTCCTG 59.969 61.111 17.64 13.30 0.00 3.86
85 87 2.164865 CTCTCAACGGTGCTGCTCCT 62.165 60.000 17.64 3.48 0.00 3.69
103 105 0.635009 TAGGTTCCTCGGTGATCCCT 59.365 55.000 0.00 0.00 0.00 4.20
124 126 2.687566 ACTTCCTTCGGCCCGGAT 60.688 61.111 0.73 0.00 0.00 4.18
134 136 1.615384 GGCTGCTTCATCCACTTCCTT 60.615 52.381 0.00 0.00 0.00 3.36
138 140 0.674895 GTCGGCTGCTTCATCCACTT 60.675 55.000 0.00 0.00 0.00 3.16
422 427 0.706433 ATGGATGACACCTTGCCCTT 59.294 50.000 0.00 0.00 0.00 3.95
509 515 2.606519 CCGTTCCCACTCCTCCCA 60.607 66.667 0.00 0.00 0.00 4.37
527 547 2.509336 AGCGAGATTTCCGTGCGG 60.509 61.111 3.94 3.94 0.00 5.69
529 549 2.401195 GCAGCGAGATTTCCGTGC 59.599 61.111 0.00 0.00 0.00 5.34
530 551 2.697425 CGCAGCGAGATTTCCGTG 59.303 61.111 9.98 0.00 0.00 4.94
584 607 1.078324 TCTCCCCCGACCTCTAGTTTT 59.922 52.381 0.00 0.00 0.00 2.43
638 661 4.129737 CTCCACATCCGCGTCCGT 62.130 66.667 4.92 0.00 0.00 4.69
673 696 3.987954 AAAATGCGGGTCGGCGGAT 62.988 57.895 7.21 0.00 35.06 4.18
696 721 6.790285 AAAGGCATTGACTTGCAAAATAAG 57.210 33.333 5.29 0.00 44.59 1.73
706 731 0.318120 CCCGCAAAAGGCATTGACTT 59.682 50.000 0.00 0.00 45.17 3.01
707 732 1.535204 CCCCGCAAAAGGCATTGACT 61.535 55.000 7.16 0.00 45.17 3.41
713 738 2.597217 CAGACCCCGCAAAAGGCA 60.597 61.111 0.00 0.00 45.17 4.75
752 777 1.212751 GTTCGTGGGCCAAATGCTC 59.787 57.895 8.40 0.00 42.61 4.26
753 778 1.228552 AGTTCGTGGGCCAAATGCT 60.229 52.632 8.40 1.40 40.92 3.79
754 779 1.212751 GAGTTCGTGGGCCAAATGC 59.787 57.895 8.40 0.00 40.16 3.56
810 835 3.723348 GCCCGCGTGTCTGGTTTC 61.723 66.667 4.92 0.00 0.00 2.78
1036 1094 1.305887 CAGGGGGAGGTACGGAGTT 60.306 63.158 0.00 0.00 37.78 3.01
1081 1139 4.802051 GCTCGGGCTTGGCATGGA 62.802 66.667 0.00 0.00 35.22 3.41
1177 1235 0.393537 GAGATGACCTTGGTGGCCAG 60.394 60.000 5.11 0.00 40.22 4.85
1186 1244 2.903404 GGTCGGAGGAGATGACCTT 58.097 57.895 3.46 0.00 46.86 3.50
1218 1276 3.681835 GGACCGCACACGAGGACT 61.682 66.667 0.00 0.00 43.93 3.85
1233 1291 3.551496 CTTGCCGCTGTTGGAGGGA 62.551 63.158 0.00 0.00 36.74 4.20
1301 1359 4.220693 AGTCGTCATGAATTGGATTCCA 57.779 40.909 0.00 0.00 38.50 3.53
1325 1383 2.169352 ACAGCATGGGAGTAGTGCTAAG 59.831 50.000 0.00 0.00 46.67 2.18
1367 1425 2.161410 CCGTAGCTGCAAAATAGCACAA 59.839 45.455 1.02 0.00 43.53 3.33
1374 1432 0.618458 TCCTCCCGTAGCTGCAAAAT 59.382 50.000 1.02 0.00 0.00 1.82
1455 1513 3.717400 ATAGCTTCATCGACGATGTGT 57.283 42.857 31.06 18.69 40.55 3.72
1483 1541 2.100991 GCTGCGCAAGGTGTATGC 59.899 61.111 13.05 4.64 40.41 3.14
1513 1571 4.641989 CACCCAACATAAAATCCTCTCCAG 59.358 45.833 0.00 0.00 0.00 3.86
1540 1599 3.643792 GACCTGAGGAACTAGCATACCAT 59.356 47.826 4.99 0.00 41.55 3.55
1656 1725 8.993121 AGTAATAATCGCCATTAATCACTTCAG 58.007 33.333 0.00 0.00 0.00 3.02
1657 1726 8.902540 AGTAATAATCGCCATTAATCACTTCA 57.097 30.769 0.00 0.00 0.00 3.02
1755 1833 3.570550 CCAGGAACTACTCCCTTAGATCG 59.429 52.174 0.00 0.00 46.81 3.69
1793 1886 2.132740 TGCAGTGCGCCTTTAAAAAG 57.867 45.000 11.20 0.00 41.33 2.27
1797 1890 0.958091 ACATTGCAGTGCGCCTTTAA 59.042 45.000 11.20 0.00 41.33 1.52
1800 1893 0.598158 CAAACATTGCAGTGCGCCTT 60.598 50.000 11.20 0.00 41.33 4.35
1804 1897 3.051327 TGAATTCAAACATTGCAGTGCG 58.949 40.909 11.20 0.00 0.00 5.34
1837 1930 4.267690 GCACAAAACCTTGCTCTTAAACAC 59.732 41.667 0.00 0.00 35.84 3.32
1879 1972 5.454554 GGTTTTGTTCGTTAAGTTGCTCTTC 59.545 40.000 0.00 0.00 37.56 2.87
1939 2033 7.014711 TGTTTGGCTGGTAGAAATATTGAAACA 59.985 33.333 0.00 0.00 0.00 2.83
1953 2047 7.870445 GTCAAAATTAAGAATGTTTGGCTGGTA 59.130 33.333 0.00 0.00 33.76 3.25
2138 2232 6.866770 TGACTACAAATTTAGGTCGTTCTGAG 59.133 38.462 0.00 0.00 0.00 3.35
2139 2233 6.751157 TGACTACAAATTTAGGTCGTTCTGA 58.249 36.000 0.00 0.00 0.00 3.27
2239 2333 4.670765 AGAGAATTGGTGAGCAAAGGATT 58.329 39.130 0.00 0.00 0.00 3.01
2243 2337 5.860716 GCTTTAAGAGAATTGGTGAGCAAAG 59.139 40.000 0.00 0.00 0.00 2.77
2244 2338 5.301551 TGCTTTAAGAGAATTGGTGAGCAAA 59.698 36.000 0.00 0.00 34.99 3.68
2336 2430 5.363580 ACCACATTGACAATTCCAAAGACTT 59.636 36.000 0.00 0.00 0.00 3.01
2348 2442 7.994425 AGTGATACAAATACCACATTGACAA 57.006 32.000 0.00 0.00 32.35 3.18
2359 2453 8.959705 AAAAGGCTACCTAGTGATACAAATAC 57.040 34.615 0.00 0.00 31.13 1.89
2642 2738 1.981495 AGAGCTGGGCAACTTAAGAGT 59.019 47.619 10.09 0.00 37.87 3.24
3011 3107 6.963242 CCATATTCATCAAAACACGAAGACTG 59.037 38.462 0.00 0.00 0.00 3.51
3216 3315 1.407979 CAAGGAGATGGGCATCAAAGC 59.592 52.381 0.00 0.00 40.22 3.51
3230 3329 5.163814 GCTGTAGCATTCACTAAACAAGGAG 60.164 44.000 0.00 0.00 41.59 3.69
3400 3500 5.826737 TGGTAGAATCGTAGGGAGAAAGTAG 59.173 44.000 0.00 0.00 0.00 2.57
3454 3554 3.724966 TCCTAATCTCCTGGGATGGAA 57.275 47.619 0.00 0.00 35.43 3.53
3581 3681 7.864108 TTGGACCAACAACATTATAGATGAG 57.136 36.000 1.69 0.00 0.00 2.90
3621 3721 3.643763 AGACAACAGTCACGAAGCTAAG 58.356 45.455 0.00 0.00 34.69 2.18
3657 3757 1.282157 AGCTGGAACGGGAGCTTATTT 59.718 47.619 0.00 0.00 43.15 1.40
3730 3830 3.555966 CACTGGGTCTGTCCTTTTCTTT 58.444 45.455 0.00 0.00 36.25 2.52
3731 3831 2.749800 GCACTGGGTCTGTCCTTTTCTT 60.750 50.000 0.00 0.00 36.25 2.52
3732 3832 1.202818 GCACTGGGTCTGTCCTTTTCT 60.203 52.381 0.00 0.00 36.25 2.52
3733 3833 1.239347 GCACTGGGTCTGTCCTTTTC 58.761 55.000 0.00 0.00 36.25 2.29
3734 3834 0.550914 TGCACTGGGTCTGTCCTTTT 59.449 50.000 0.00 0.00 36.25 2.27
3822 3923 1.006998 CATTCCACCCCCATCTTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
4008 4109 1.621317 TGTTCCGGAGCATAGTTGACA 59.379 47.619 17.98 6.30 0.00 3.58
4022 4123 3.185246 AGTGAGCCAGATTATGTTCCG 57.815 47.619 0.00 0.00 0.00 4.30
4192 4295 6.100279 AGGCATGACATAACTAATCCTGAAGA 59.900 38.462 0.00 0.00 0.00 2.87
4266 4369 6.321690 ACTGCTAGACTCGATTTACACCTAAT 59.678 38.462 0.00 0.00 0.00 1.73
4272 4375 5.296283 GGAGTACTGCTAGACTCGATTTACA 59.704 44.000 7.20 0.00 42.56 2.41
4467 4570 9.069082 TCTCGGGTTAAAAATCAAACTAATGAA 57.931 29.630 0.00 0.00 32.06 2.57
4640 4747 6.094719 GCAGAATATGATTTTGTCTGTTGCA 58.905 36.000 0.00 0.00 38.36 4.08
4754 4861 2.115695 TGCATGGGCTGTTGCAGA 59.884 55.556 0.00 0.00 43.54 4.26
4772 4879 0.755327 AGCCCAACACACCAAGGAAC 60.755 55.000 0.00 0.00 0.00 3.62
4910 5032 4.365111 AGGCCCCTTTGCGCATCA 62.365 61.111 12.75 0.00 0.00 3.07
4915 5037 1.608590 CATATAACAGGCCCCTTTGCG 59.391 52.381 0.00 0.00 0.00 4.85
5202 5327 8.897752 GTTGGAGATGCTCTAAAAAGATATTGT 58.102 33.333 0.00 0.00 33.06 2.71
5206 5331 6.540189 GCTGTTGGAGATGCTCTAAAAAGATA 59.460 38.462 0.00 0.00 33.06 1.98
5310 5436 1.430707 TAAATTTACCGCGGCCGCTC 61.431 55.000 43.60 20.53 39.32 5.03
5539 5818 1.152839 GAGGAGGAGGAGGAGGACG 60.153 68.421 0.00 0.00 0.00 4.79
5558 5858 0.826715 ACACCACCGAGGATGATGAG 59.173 55.000 0.00 0.00 41.22 2.90
5646 5946 1.633561 CAGTGCGATCTCGTCAATGT 58.366 50.000 12.72 0.00 42.22 2.71
5833 6187 2.327343 CGTGAGGACCACCGTCGTA 61.327 63.158 0.00 0.00 42.76 3.43
5834 6188 3.667282 CGTGAGGACCACCGTCGT 61.667 66.667 0.00 0.00 42.76 4.34
6013 6435 1.290324 CCGCGACATCTATGAGGGG 59.710 63.158 8.23 4.76 36.48 4.79
6015 6437 1.401670 GCTACCGCGACATCTATGAGG 60.402 57.143 8.23 0.00 0.00 3.86
6019 6441 1.965219 GGGCTACCGCGACATCTAT 59.035 57.895 8.23 0.00 36.88 1.98
6108 6530 1.807573 CTTCCTCTGCCGCTTCGTC 60.808 63.158 0.00 0.00 0.00 4.20
6110 6532 3.191539 GCTTCCTCTGCCGCTTCG 61.192 66.667 0.00 0.00 0.00 3.79
6116 6538 4.760047 TTCGCCGCTTCCTCTGCC 62.760 66.667 0.00 0.00 0.00 4.85
6129 6551 3.858989 GCTCTGCCGCTTCTTCGC 61.859 66.667 0.00 0.00 0.00 4.70
6130 6552 2.433145 TGCTCTGCCGCTTCTTCG 60.433 61.111 0.00 0.00 0.00 3.79
6131 6553 2.734673 CGTGCTCTGCCGCTTCTTC 61.735 63.158 0.00 0.00 0.00 2.87
6132 6554 2.740055 CGTGCTCTGCCGCTTCTT 60.740 61.111 0.00 0.00 0.00 2.52
6165 6587 4.530857 ACGCAGCTACCCATCGCC 62.531 66.667 0.00 0.00 0.00 5.54
6194 6616 0.317799 TCCGGCGCGCCTATAAATTA 59.682 50.000 43.60 19.07 0.00 1.40
6223 6645 3.261951 GCCGCGCGCTAGATTTGA 61.262 61.111 30.48 0.00 0.00 2.69
6256 6678 3.294732 GTAAACGATTGCGCGCGC 61.295 61.111 45.02 45.02 42.48 6.86
6330 6756 1.078988 CGCGGGGTAAACTGGCTTA 60.079 57.895 0.00 0.00 0.00 3.09
6354 6780 3.219052 ACACTACTTGCGACTAAGAGC 57.781 47.619 0.00 0.00 0.00 4.09
6355 6781 7.249186 AGTATACACTACTTGCGACTAAGAG 57.751 40.000 5.50 0.00 31.45 2.85
6356 6782 7.621428 AAGTATACACTACTTGCGACTAAGA 57.379 36.000 5.50 0.00 36.51 2.10
6357 6783 7.754027 ACAAAGTATACACTACTTGCGACTAAG 59.246 37.037 5.50 0.00 37.77 2.18
6358 6784 7.596494 ACAAAGTATACACTACTTGCGACTAA 58.404 34.615 5.50 0.00 37.77 2.24
6359 6785 7.094677 TGACAAAGTATACACTACTTGCGACTA 60.095 37.037 5.50 0.00 37.77 2.59
6360 6786 6.022163 ACAAAGTATACACTACTTGCGACT 57.978 37.500 5.50 0.00 37.77 4.18
6361 6787 5.860182 TGACAAAGTATACACTACTTGCGAC 59.140 40.000 5.50 0.00 37.77 5.19
6362 6788 6.016213 TGACAAAGTATACACTACTTGCGA 57.984 37.500 5.50 0.00 37.77 5.10
6363 6789 6.669977 GCTTGACAAAGTATACACTACTTGCG 60.670 42.308 5.50 0.00 37.77 4.85
6364 6790 6.369065 AGCTTGACAAAGTATACACTACTTGC 59.631 38.462 5.50 1.01 37.77 4.01
6371 6797 8.336080 GCCTATTAAGCTTGACAAAGTATACAC 58.664 37.037 9.86 0.00 35.69 2.90
6385 6811 6.414732 TGTATGTGAAGTGCCTATTAAGCTT 58.585 36.000 3.48 3.48 0.00 3.74
6436 6862 3.735237 TTAGAGGCATCGACCATTCTC 57.265 47.619 0.00 0.00 0.00 2.87
6439 6866 2.498167 GCATTAGAGGCATCGACCATT 58.502 47.619 0.00 0.00 0.00 3.16
6467 6894 5.215903 CGATACAGCTTGATTATCTCGTGT 58.784 41.667 0.00 0.00 0.00 4.49
6475 6902 4.441792 ACACATGCGATACAGCTTGATTA 58.558 39.130 10.97 0.00 42.63 1.75
6535 6969 6.644775 TGCAACAAAATTTCAATTCGCTTAC 58.355 32.000 0.00 0.00 0.00 2.34
6613 7060 2.288729 CCGCACATTCATGGACATGTAG 59.711 50.000 11.66 6.14 39.72 2.74
6624 7071 3.006940 GTTATCTTGTCCCGCACATTCA 58.993 45.455 0.00 0.00 33.90 2.57
6625 7072 2.030457 CGTTATCTTGTCCCGCACATTC 59.970 50.000 0.00 0.00 33.90 2.67
6658 7105 2.784380 GCTGTTGAGATTACTCGCGTAG 59.216 50.000 5.77 4.90 45.25 3.51
6690 7137 0.179100 AGAATCGCCGTCATCCTGTG 60.179 55.000 0.00 0.00 0.00 3.66
6709 7156 5.728637 ACATAGTATCTGCATCCGAATCA 57.271 39.130 0.00 0.00 0.00 2.57
6735 7182 0.523072 GCGACCAACATGATGCAAGT 59.477 50.000 0.00 0.00 0.00 3.16
6749 7196 0.179189 CCAGCGAAAATGAAGCGACC 60.179 55.000 0.00 0.00 35.78 4.79
6783 7230 0.534412 CCGAGATGTCAGGCTGAACT 59.466 55.000 20.62 17.92 0.00 3.01
6788 7235 0.323816 TGTCTCCGAGATGTCAGGCT 60.324 55.000 0.33 0.00 0.00 4.58
6834 7285 7.648039 AAATTCACTACTGGGTACACAAAAA 57.352 32.000 0.00 0.00 0.00 1.94
6867 7318 7.615790 CAGAAAAATCAGTTCAAACTTCAAGC 58.384 34.615 0.00 0.00 37.08 4.01
6875 7326 5.811613 CACAAGGCAGAAAAATCAGTTCAAA 59.188 36.000 0.00 0.00 0.00 2.69
6911 7362 4.153475 GCTTTGTTACAAAGTATCGCAGGA 59.847 41.667 30.47 0.00 0.00 3.86
6917 7368 4.094442 CCCCGAGCTTTGTTACAAAGTATC 59.906 45.833 30.47 26.31 0.00 2.24
6931 7384 0.252197 GAATGTGGTACCCCGAGCTT 59.748 55.000 10.07 0.00 0.00 3.74
6944 7397 1.186917 TTGCTTGGCCAGGGAATGTG 61.187 55.000 18.10 0.00 0.00 3.21
6945 7398 0.471591 TTTGCTTGGCCAGGGAATGT 60.472 50.000 22.30 0.00 0.00 2.71
6946 7399 0.686224 TTTTGCTTGGCCAGGGAATG 59.314 50.000 22.30 3.40 0.00 2.67
6947 7400 1.348696 CTTTTTGCTTGGCCAGGGAAT 59.651 47.619 22.30 0.00 0.00 3.01
6949 7402 0.105760 TCTTTTTGCTTGGCCAGGGA 60.106 50.000 17.71 11.73 0.00 4.20
6950 7403 0.758123 TTCTTTTTGCTTGGCCAGGG 59.242 50.000 17.71 10.14 0.00 4.45
6979 7432 4.364415 AAACAACGCACAACTACATGTT 57.636 36.364 2.30 0.00 39.92 2.71
6982 7435 7.378461 CAGAAATAAAACAACGCACAACTACAT 59.622 33.333 0.00 0.00 0.00 2.29
6984 7437 6.689669 ACAGAAATAAAACAACGCACAACTAC 59.310 34.615 0.00 0.00 0.00 2.73
7048 7501 9.814899 TTTTGCAGTTCAAAATATTTTCAGAGA 57.185 25.926 10.53 2.87 46.44 3.10
7061 7514 7.913674 ATGTAAAACCTTTTTGCAGTTCAAA 57.086 28.000 7.95 0.00 42.50 2.69
7062 7515 7.913674 AATGTAAAACCTTTTTGCAGTTCAA 57.086 28.000 7.95 0.00 0.00 2.69
7063 7516 7.913674 AAATGTAAAACCTTTTTGCAGTTCA 57.086 28.000 8.65 0.00 0.00 3.18
7064 7517 8.447053 TCAAAATGTAAAACCTTTTTGCAGTTC 58.553 29.630 13.06 0.00 38.42 3.01
7065 7518 8.233868 GTCAAAATGTAAAACCTTTTTGCAGTT 58.766 29.630 8.65 8.65 38.42 3.16
7066 7519 7.606073 AGTCAAAATGTAAAACCTTTTTGCAGT 59.394 29.630 7.95 3.18 38.42 4.40
7067 7520 7.973601 AGTCAAAATGTAAAACCTTTTTGCAG 58.026 30.769 7.95 0.00 38.42 4.41
7068 7521 7.913674 AGTCAAAATGTAAAACCTTTTTGCA 57.086 28.000 4.91 4.91 38.42 4.08
7069 7522 7.696035 CCAAGTCAAAATGTAAAACCTTTTTGC 59.304 33.333 0.00 0.00 38.42 3.68
7070 7523 8.940952 TCCAAGTCAAAATGTAAAACCTTTTTG 58.059 29.630 0.00 0.00 39.20 2.44
7071 7524 9.161629 CTCCAAGTCAAAATGTAAAACCTTTTT 57.838 29.630 0.00 0.00 0.00 1.94
7072 7525 7.768582 CCTCCAAGTCAAAATGTAAAACCTTTT 59.231 33.333 0.00 0.00 0.00 2.27
7073 7526 7.125053 TCCTCCAAGTCAAAATGTAAAACCTTT 59.875 33.333 0.00 0.00 0.00 3.11
7074 7527 6.609616 TCCTCCAAGTCAAAATGTAAAACCTT 59.390 34.615 0.00 0.00 0.00 3.50
7075 7528 6.133356 TCCTCCAAGTCAAAATGTAAAACCT 58.867 36.000 0.00 0.00 0.00 3.50
7076 7529 6.399639 TCCTCCAAGTCAAAATGTAAAACC 57.600 37.500 0.00 0.00 0.00 3.27
7077 7530 7.489160 ACTTCCTCCAAGTCAAAATGTAAAAC 58.511 34.615 0.00 0.00 42.07 2.43
7078 7531 7.654022 ACTTCCTCCAAGTCAAAATGTAAAA 57.346 32.000 0.00 0.00 42.07 1.52
7079 7532 8.754991 TTACTTCCTCCAAGTCAAAATGTAAA 57.245 30.769 0.00 0.00 42.07 2.01
7080 7533 8.754991 TTTACTTCCTCCAAGTCAAAATGTAA 57.245 30.769 0.00 0.00 42.07 2.41
7081 7534 8.934023 ATTTACTTCCTCCAAGTCAAAATGTA 57.066 30.769 0.00 0.00 42.07 2.29
7082 7535 7.839680 ATTTACTTCCTCCAAGTCAAAATGT 57.160 32.000 0.00 0.00 42.07 2.71
7087 7540 9.635404 TCTTTAAATTTACTTCCTCCAAGTCAA 57.365 29.630 0.00 0.00 42.07 3.18
7088 7541 9.807921 ATCTTTAAATTTACTTCCTCCAAGTCA 57.192 29.630 0.00 0.00 42.07 3.41
7092 7545 9.807921 ACTGATCTTTAAATTTACTTCCTCCAA 57.192 29.630 0.00 0.00 0.00 3.53
7093 7546 9.231297 CACTGATCTTTAAATTTACTTCCTCCA 57.769 33.333 0.00 0.00 0.00 3.86
7094 7547 8.184848 GCACTGATCTTTAAATTTACTTCCTCC 58.815 37.037 0.00 0.00 0.00 4.30
7095 7548 8.730680 TGCACTGATCTTTAAATTTACTTCCTC 58.269 33.333 0.00 0.00 0.00 3.71
7097 7550 9.691362 TTTGCACTGATCTTTAAATTTACTTCC 57.309 29.630 0.00 0.00 0.00 3.46
7109 7562 6.389830 TGTGTTGTATTTGCACTGATCTTT 57.610 33.333 0.00 0.00 34.52 2.52
7112 7565 7.134815 GGATATGTGTTGTATTTGCACTGATC 58.865 38.462 0.00 0.00 34.52 2.92
7119 7572 7.043192 GCTGATTTGGATATGTGTTGTATTTGC 60.043 37.037 0.00 0.00 0.00 3.68
7128 7582 9.797642 TTGATATAAGCTGATTTGGATATGTGT 57.202 29.630 0.00 0.00 0.00 3.72
7162 7616 3.292460 CCCAACTTCAACAACTTGGGTA 58.708 45.455 6.20 0.00 45.52 3.69
7163 7617 2.107366 CCCAACTTCAACAACTTGGGT 58.893 47.619 6.20 0.00 45.52 4.51
7164 7618 2.888834 CCCAACTTCAACAACTTGGG 57.111 50.000 0.00 0.00 45.39 4.12
7165 7619 2.757868 TGTCCCAACTTCAACAACTTGG 59.242 45.455 0.00 0.00 34.10 3.61
7166 7620 4.654091 ATGTCCCAACTTCAACAACTTG 57.346 40.909 0.00 0.00 0.00 3.16
7167 7621 5.675684 AAATGTCCCAACTTCAACAACTT 57.324 34.783 0.00 0.00 0.00 2.66
7170 7624 7.436673 CGAAAATAAATGTCCCAACTTCAACAA 59.563 33.333 0.00 0.00 0.00 2.83
7171 7625 6.920758 CGAAAATAAATGTCCCAACTTCAACA 59.079 34.615 0.00 0.00 0.00 3.33
7172 7626 6.364976 CCGAAAATAAATGTCCCAACTTCAAC 59.635 38.462 0.00 0.00 0.00 3.18
7173 7627 6.265649 TCCGAAAATAAATGTCCCAACTTCAA 59.734 34.615 0.00 0.00 0.00 2.69
7175 7629 6.090783 GTCCGAAAATAAATGTCCCAACTTC 58.909 40.000 0.00 0.00 0.00 3.01
7176 7630 5.335348 CGTCCGAAAATAAATGTCCCAACTT 60.335 40.000 0.00 0.00 0.00 2.66
7177 7631 4.155280 CGTCCGAAAATAAATGTCCCAACT 59.845 41.667 0.00 0.00 0.00 3.16
7178 7632 4.408694 CGTCCGAAAATAAATGTCCCAAC 58.591 43.478 0.00 0.00 0.00 3.77
7180 7634 3.011119 CCGTCCGAAAATAAATGTCCCA 58.989 45.455 0.00 0.00 0.00 4.37
7181 7635 3.272581 TCCGTCCGAAAATAAATGTCCC 58.727 45.455 0.00 0.00 0.00 4.46
7182 7636 3.311596 CCTCCGTCCGAAAATAAATGTCC 59.688 47.826 0.00 0.00 0.00 4.02
7183 7637 4.033702 GTCCTCCGTCCGAAAATAAATGTC 59.966 45.833 0.00 0.00 0.00 3.06
7184 7638 3.937079 GTCCTCCGTCCGAAAATAAATGT 59.063 43.478 0.00 0.00 0.00 2.71
7185 7639 3.000925 CGTCCTCCGTCCGAAAATAAATG 59.999 47.826 0.00 0.00 0.00 2.32
7186 7640 3.192466 CGTCCTCCGTCCGAAAATAAAT 58.808 45.455 0.00 0.00 0.00 1.40
7187 7641 2.609350 CGTCCTCCGTCCGAAAATAAA 58.391 47.619 0.00 0.00 0.00 1.40
7189 7643 0.457035 CCGTCCTCCGTCCGAAAATA 59.543 55.000 0.00 0.00 33.66 1.40
7190 7644 1.217244 CCGTCCTCCGTCCGAAAAT 59.783 57.895 0.00 0.00 33.66 1.82
7192 7646 2.282391 TCCGTCCTCCGTCCGAAA 60.282 61.111 0.00 0.00 33.66 3.46
7193 7647 2.749044 CTCCGTCCTCCGTCCGAA 60.749 66.667 0.00 0.00 33.66 4.30
7194 7648 4.790962 CCTCCGTCCTCCGTCCGA 62.791 72.222 0.00 0.00 33.66 4.55
7196 7650 4.437587 TCCCTCCGTCCTCCGTCC 62.438 72.222 0.00 0.00 33.66 4.79
7199 7653 1.150992 ATACTCCCTCCGTCCTCCG 59.849 63.158 0.00 0.00 0.00 4.63
7200 7654 0.106116 ACATACTCCCTCCGTCCTCC 60.106 60.000 0.00 0.00 0.00 4.30
7201 7655 1.033574 CACATACTCCCTCCGTCCTC 58.966 60.000 0.00 0.00 0.00 3.71
7202 7656 0.335361 ACACATACTCCCTCCGTCCT 59.665 55.000 0.00 0.00 0.00 3.85
7203 7657 2.062971 TACACATACTCCCTCCGTCC 57.937 55.000 0.00 0.00 0.00 4.79
7204 7658 2.223433 CGTTACACATACTCCCTCCGTC 60.223 54.545 0.00 0.00 0.00 4.79
7205 7659 1.747355 CGTTACACATACTCCCTCCGT 59.253 52.381 0.00 0.00 0.00 4.69
7206 7660 1.066605 CCGTTACACATACTCCCTCCG 59.933 57.143 0.00 0.00 0.00 4.63
7207 7661 2.361438 CTCCGTTACACATACTCCCTCC 59.639 54.545 0.00 0.00 0.00 4.30
7208 7662 2.361438 CCTCCGTTACACATACTCCCTC 59.639 54.545 0.00 0.00 0.00 4.30
7209 7663 2.385803 CCTCCGTTACACATACTCCCT 58.614 52.381 0.00 0.00 0.00 4.20
7210 7664 1.411612 CCCTCCGTTACACATACTCCC 59.588 57.143 0.00 0.00 0.00 4.30
7211 7665 2.361438 CTCCCTCCGTTACACATACTCC 59.639 54.545 0.00 0.00 0.00 3.85
7212 7666 3.022406 ACTCCCTCCGTTACACATACTC 58.978 50.000 0.00 0.00 0.00 2.59
7213 7667 3.097342 ACTCCCTCCGTTACACATACT 57.903 47.619 0.00 0.00 0.00 2.12
7214 7668 4.340381 ACATACTCCCTCCGTTACACATAC 59.660 45.833 0.00 0.00 0.00 2.39
7215 7669 4.340097 CACATACTCCCTCCGTTACACATA 59.660 45.833 0.00 0.00 0.00 2.29
7216 7670 3.132289 CACATACTCCCTCCGTTACACAT 59.868 47.826 0.00 0.00 0.00 3.21
7217 7671 2.494471 CACATACTCCCTCCGTTACACA 59.506 50.000 0.00 0.00 0.00 3.72
7218 7672 2.494870 ACACATACTCCCTCCGTTACAC 59.505 50.000 0.00 0.00 0.00 2.90
7219 7673 2.811410 ACACATACTCCCTCCGTTACA 58.189 47.619 0.00 0.00 0.00 2.41
7220 7674 4.989279 TTACACATACTCCCTCCGTTAC 57.011 45.455 0.00 0.00 0.00 2.50
7221 7675 4.276678 CGATTACACATACTCCCTCCGTTA 59.723 45.833 0.00 0.00 0.00 3.18
7222 7676 3.067742 CGATTACACATACTCCCTCCGTT 59.932 47.826 0.00 0.00 0.00 4.44
7223 7677 2.621998 CGATTACACATACTCCCTCCGT 59.378 50.000 0.00 0.00 0.00 4.69
7224 7678 2.882761 TCGATTACACATACTCCCTCCG 59.117 50.000 0.00 0.00 0.00 4.63
7225 7679 4.931661 TTCGATTACACATACTCCCTCC 57.068 45.455 0.00 0.00 0.00 4.30
7226 7680 5.844004 ACATTCGATTACACATACTCCCTC 58.156 41.667 0.00 0.00 0.00 4.30
7227 7681 5.507482 CGACATTCGATTACACATACTCCCT 60.507 44.000 0.00 0.00 43.74 4.20
7228 7682 4.680110 CGACATTCGATTACACATACTCCC 59.320 45.833 0.00 0.00 43.74 4.30
7229 7683 5.516996 TCGACATTCGATTACACATACTCC 58.483 41.667 0.00 0.00 44.82 3.85
7277 7736 4.581309 AAGATTTCCTCCTGCAATCTGA 57.419 40.909 0.00 0.00 37.34 3.27
7306 7776 3.436704 GTGCTTCGATGTCTGGATTTTGA 59.563 43.478 0.00 0.00 0.00 2.69
7312 7782 0.684535 TTGGTGCTTCGATGTCTGGA 59.315 50.000 0.00 0.00 0.00 3.86
7322 7792 4.082571 AGCTACACAAATCATTGGTGCTTC 60.083 41.667 4.65 0.00 41.01 3.86
7325 7795 3.504863 CAGCTACACAAATCATTGGTGC 58.495 45.455 4.65 0.00 41.01 5.01
7330 7800 5.710513 TTTCAGCAGCTACACAAATCATT 57.289 34.783 0.00 0.00 0.00 2.57
7382 7852 7.594758 TGCATTTGTAACTAAATGAGAAACTGC 59.405 33.333 13.61 0.00 46.13 4.40
7385 7855 9.463443 AACTGCATTTGTAACTAAATGAGAAAC 57.537 29.630 13.61 0.00 46.13 2.78
7418 7888 1.137282 GAGGCCCGTGTTTTGGAAAAA 59.863 47.619 0.00 0.00 0.00 1.94
7419 7889 0.747852 GAGGCCCGTGTTTTGGAAAA 59.252 50.000 0.00 0.00 0.00 2.29
7451 7928 5.757886 TCGAATCTTGAAATTTTGAAGCGT 58.242 33.333 3.74 0.00 0.00 5.07
7474 7951 6.465948 TCATGCTTTGCCTGAATAAAACATT 58.534 32.000 0.00 0.00 30.90 2.71
7496 7973 6.403527 CGTTAATGGAAATGCAGATGTTCTCA 60.404 38.462 0.00 0.00 0.00 3.27
7572 8049 5.032327 TCTGCTAGTACGGTTATCTGAGA 57.968 43.478 0.00 0.00 0.00 3.27
7584 8061 6.183360 TGTCCTCTGATTTCATCTGCTAGTAC 60.183 42.308 0.00 0.00 0.00 2.73
7591 8071 4.869297 GTGTCTGTCCTCTGATTTCATCTG 59.131 45.833 0.00 0.00 0.00 2.90
7603 8083 1.546476 CAGTGGGTAGTGTCTGTCCTC 59.454 57.143 0.00 0.00 0.00 3.71
7623 8130 2.778928 CGTCGAATCGAATCAGAGTGTC 59.221 50.000 7.01 0.00 37.72 3.67
7681 8193 1.228552 GCCCAAGAAGCCCAAGACA 60.229 57.895 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.