Multiple sequence alignment - TraesCS3B01G129200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G129200 chr3B 100.000 3286 0 0 1 3286 109941416 109944701 0.000000e+00 6069.0
1 TraesCS3B01G129200 chr3B 92.233 103 8 0 1542 1644 109942909 109943011 2.640000e-31 147.0
2 TraesCS3B01G129200 chr3B 89.873 79 8 0 1566 1644 109942909 109942987 5.800000e-18 102.0
3 TraesCS3B01G129200 chr3B 89.873 79 8 0 1494 1572 109942981 109943059 5.800000e-18 102.0
4 TraesCS3B01G129200 chr3D 93.043 2041 88 19 429 2445 66339321 66341331 0.000000e+00 2933.0
5 TraesCS3B01G129200 chr3D 90.244 697 47 12 2599 3283 66341338 66342025 0.000000e+00 891.0
6 TraesCS3B01G129200 chr3D 95.758 165 7 0 263 427 579730873 579730709 1.940000e-67 267.0
7 TraesCS3B01G129200 chr3D 95.146 103 5 0 1494 1596 66340425 66340527 2.620000e-36 163.0
8 TraesCS3B01G129200 chr3D 90.991 111 9 1 1535 1644 66340369 66340479 7.350000e-32 148.0
9 TraesCS3B01G129200 chr3A 91.566 1909 67 25 427 2311 77470721 77472559 0.000000e+00 2547.0
10 TraesCS3B01G129200 chr3A 89.685 698 50 9 2599 3283 77472752 77473440 0.000000e+00 870.0
11 TraesCS3B01G129200 chr3A 88.889 270 18 7 1 264 77470456 77470719 4.090000e-84 322.0
12 TraesCS3B01G129200 chr3A 93.671 79 5 0 1566 1644 77471769 77471847 5.760000e-23 119.0
13 TraesCS3B01G129200 chr7B 92.708 192 9 3 262 448 614279811 614280002 4.180000e-69 272.0
14 TraesCS3B01G129200 chr7B 94.286 175 8 1 264 436 497576787 497576613 1.940000e-67 267.0
15 TraesCS3B01G129200 chr7B 92.778 180 11 1 264 441 155387660 155387839 3.250000e-65 259.0
16 TraesCS3B01G129200 chr1B 96.364 165 6 0 265 429 370161653 370161817 4.180000e-69 272.0
17 TraesCS3B01G129200 chr1B 96.933 163 4 1 265 427 488484922 488485083 4.180000e-69 272.0
18 TraesCS3B01G129200 chr2B 96.341 164 6 0 264 427 41150517 41150354 1.500000e-68 270.0
19 TraesCS3B01G129200 chr2B 95.238 168 8 0 261 428 664125034 664125201 1.940000e-67 267.0
20 TraesCS3B01G129200 chr5D 94.798 173 7 2 256 427 429977836 429978007 5.400000e-68 268.0
21 TraesCS3B01G129200 chr2D 83.784 111 17 1 2480 2590 602694738 602694629 1.610000e-18 104.0
22 TraesCS3B01G129200 chr4B 85.366 82 11 1 2506 2586 24774615 24774696 2.100000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G129200 chr3B 109941416 109944701 3285 False 1605.00 6069 92.99475 1 3286 4 chr3B.!!$F1 3285
1 TraesCS3B01G129200 chr3D 66339321 66342025 2704 False 1033.75 2933 92.35600 429 3283 4 chr3D.!!$F1 2854
2 TraesCS3B01G129200 chr3A 77470456 77473440 2984 False 964.50 2547 90.95275 1 3283 4 chr3A.!!$F1 3282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 831 0.107508 GTGGGAGCTTGCTCATGCTA 60.108 55.0 21.97 2.68 41.18 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2552 2671 0.036388 TCCACCAGCTCCACGAAATC 60.036 55.0 0.0 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.549754 CAGAAAGTTACAGGCACCACAG 59.450 50.000 0.00 0.00 0.00 3.66
31 32 1.266989 GAAAGTTACAGGCACCACAGC 59.733 52.381 0.00 0.00 0.00 4.40
32 33 0.182537 AAGTTACAGGCACCACAGCA 59.817 50.000 0.00 0.00 35.83 4.41
34 35 0.535102 GTTACAGGCACCACAGCACT 60.535 55.000 0.00 0.00 35.83 4.40
36 37 0.608130 TACAGGCACCACAGCACTAG 59.392 55.000 0.00 0.00 35.83 2.57
38 39 0.251354 CAGGCACCACAGCACTAGAT 59.749 55.000 0.00 0.00 35.83 1.98
39 40 0.987294 AGGCACCACAGCACTAGATT 59.013 50.000 0.00 0.00 35.83 2.40
40 41 1.352352 AGGCACCACAGCACTAGATTT 59.648 47.619 0.00 0.00 35.83 2.17
68 75 4.900635 TGAAGAAAAGACAGCCTTTCAC 57.099 40.909 0.00 0.00 43.90 3.18
91 98 5.084818 TGATGAAGGTAGAAGCGAATCAA 57.915 39.130 0.00 0.00 0.00 2.57
114 121 4.228912 AGGAACAGAAACATTTGAAGCG 57.771 40.909 0.00 0.00 0.00 4.68
125 132 2.420628 TTTGAAGCGCAAATCTGTGG 57.579 45.000 11.47 0.00 41.37 4.17
147 154 9.738832 TGTGGTAATAAGCAAAACTTACTTTTC 57.261 29.630 0.00 0.00 43.60 2.29
149 156 8.361889 TGGTAATAAGCAAAACTTACTTTTCCC 58.638 33.333 0.00 0.00 43.60 3.97
150 157 7.816031 GGTAATAAGCAAAACTTACTTTTCCCC 59.184 37.037 0.00 0.00 43.60 4.81
152 159 5.887214 AAGCAAAACTTACTTTTCCCCAT 57.113 34.783 0.00 0.00 36.62 4.00
153 160 5.887214 AGCAAAACTTACTTTTCCCCATT 57.113 34.783 0.00 0.00 28.85 3.16
173 180 8.591072 CCCCATTTATCTAAAGATGAAATGCAT 58.409 33.333 17.96 0.00 40.77 3.96
180 187 7.692460 TCTAAAGATGAAATGCATGACACTT 57.308 32.000 0.00 7.47 37.34 3.16
186 193 3.758023 TGAAATGCATGACACTTACAGGG 59.242 43.478 0.00 0.00 0.00 4.45
190 197 2.640332 TGCATGACACTTACAGGGGTTA 59.360 45.455 0.00 0.00 0.00 2.85
196 203 4.282703 TGACACTTACAGGGGTTAGACTTC 59.717 45.833 0.00 0.00 0.00 3.01
197 204 4.490706 ACACTTACAGGGGTTAGACTTCT 58.509 43.478 0.00 0.00 0.00 2.85
198 205 5.648247 ACACTTACAGGGGTTAGACTTCTA 58.352 41.667 0.00 0.00 0.00 2.10
199 206 5.715753 ACACTTACAGGGGTTAGACTTCTAG 59.284 44.000 0.00 0.00 0.00 2.43
200 207 4.710865 ACTTACAGGGGTTAGACTTCTAGC 59.289 45.833 0.00 0.00 0.00 3.42
223 230 1.131315 GCAAAAGCAGACCGAATCCTC 59.869 52.381 0.00 0.00 0.00 3.71
264 271 4.762251 GGACCAAAAGACAGCTTCAGTAAT 59.238 41.667 0.00 0.00 31.82 1.89
265 272 5.938125 GGACCAAAAGACAGCTTCAGTAATA 59.062 40.000 0.00 0.00 31.82 0.98
266 273 6.128254 GGACCAAAAGACAGCTTCAGTAATAC 60.128 42.308 0.00 0.00 31.82 1.89
267 274 6.534634 ACCAAAAGACAGCTTCAGTAATACT 58.465 36.000 0.00 0.00 31.82 2.12
268 275 6.651225 ACCAAAAGACAGCTTCAGTAATACTC 59.349 38.462 0.00 0.00 31.82 2.59
269 276 6.092807 CCAAAAGACAGCTTCAGTAATACTCC 59.907 42.308 0.00 0.00 31.82 3.85
270 277 5.346181 AAGACAGCTTCAGTAATACTCCC 57.654 43.478 0.00 0.00 0.00 4.30
271 278 4.615513 AGACAGCTTCAGTAATACTCCCT 58.384 43.478 0.00 0.00 0.00 4.20
272 279 4.647399 AGACAGCTTCAGTAATACTCCCTC 59.353 45.833 0.00 0.00 0.00 4.30
273 280 3.707102 ACAGCTTCAGTAATACTCCCTCC 59.293 47.826 0.00 0.00 0.00 4.30
274 281 2.959707 AGCTTCAGTAATACTCCCTCCG 59.040 50.000 0.00 0.00 0.00 4.63
275 282 2.694109 GCTTCAGTAATACTCCCTCCGT 59.306 50.000 0.00 0.00 0.00 4.69
276 283 3.132467 GCTTCAGTAATACTCCCTCCGTT 59.868 47.826 0.00 0.00 0.00 4.44
277 284 4.737055 GCTTCAGTAATACTCCCTCCGTTC 60.737 50.000 0.00 0.00 0.00 3.95
278 285 3.294214 TCAGTAATACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
279 286 3.053095 TCAGTAATACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
280 287 4.166725 TCAGTAATACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
281 288 4.891756 CAGTAATACTCCCTCCGTTCCTAA 59.108 45.833 0.00 0.00 0.00 2.69
282 289 5.361857 CAGTAATACTCCCTCCGTTCCTAAA 59.638 44.000 0.00 0.00 0.00 1.85
283 290 6.041751 CAGTAATACTCCCTCCGTTCCTAAAT 59.958 42.308 0.00 0.00 0.00 1.40
284 291 7.232127 CAGTAATACTCCCTCCGTTCCTAAATA 59.768 40.741 0.00 0.00 0.00 1.40
285 292 7.954620 AGTAATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
286 293 9.247861 GTAATACTCCCTCCGTTCCTAAATATA 57.752 37.037 0.00 0.00 0.00 0.86
287 294 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
288 295 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
289 296 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
290 297 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
291 298 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
292 299 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
293 300 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
294 301 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
295 302 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
298 305 9.257651 CCGTTCCTAAATATAAGTCTTTGTAGG 57.742 37.037 0.00 0.00 0.00 3.18
299 306 9.257651 CGTTCCTAAATATAAGTCTTTGTAGGG 57.742 37.037 0.00 0.00 0.00 3.53
310 317 6.253946 AGTCTTTGTAGGGATTCCATTAGG 57.746 41.667 4.80 0.00 34.83 2.69
311 318 5.731678 AGTCTTTGTAGGGATTCCATTAGGT 59.268 40.000 4.80 0.00 35.89 3.08
312 319 5.823045 GTCTTTGTAGGGATTCCATTAGGTG 59.177 44.000 4.80 0.00 35.89 4.00
327 334 4.644103 TTAGGTGGACTACATACGAAGC 57.356 45.455 0.00 0.00 0.00 3.86
328 335 2.453521 AGGTGGACTACATACGAAGCA 58.546 47.619 0.00 0.00 0.00 3.91
329 336 2.427453 AGGTGGACTACATACGAAGCAG 59.573 50.000 0.00 0.00 0.00 4.24
330 337 2.426024 GGTGGACTACATACGAAGCAGA 59.574 50.000 0.00 0.00 0.00 4.26
331 338 3.119245 GGTGGACTACATACGAAGCAGAA 60.119 47.826 0.00 0.00 0.00 3.02
332 339 4.441634 GGTGGACTACATACGAAGCAGAAT 60.442 45.833 0.00 0.00 0.00 2.40
333 340 4.504461 GTGGACTACATACGAAGCAGAATG 59.496 45.833 0.00 0.00 40.87 2.67
334 341 4.401202 TGGACTACATACGAAGCAGAATGA 59.599 41.667 0.00 0.00 39.69 2.57
335 342 5.105513 TGGACTACATACGAAGCAGAATGAA 60.106 40.000 0.00 0.00 39.69 2.57
336 343 5.986135 GGACTACATACGAAGCAGAATGAAT 59.014 40.000 0.00 0.00 39.69 2.57
337 344 6.074088 GGACTACATACGAAGCAGAATGAATG 60.074 42.308 0.00 0.00 39.69 2.67
338 345 6.573434 ACTACATACGAAGCAGAATGAATGA 58.427 36.000 0.00 0.00 39.69 2.57
339 346 7.041721 ACTACATACGAAGCAGAATGAATGAA 58.958 34.615 0.00 0.00 39.69 2.57
340 347 6.932356 ACATACGAAGCAGAATGAATGAAT 57.068 33.333 0.00 0.00 39.69 2.57
341 348 6.952743 ACATACGAAGCAGAATGAATGAATC 58.047 36.000 0.00 0.00 39.69 2.52
342 349 6.765036 ACATACGAAGCAGAATGAATGAATCT 59.235 34.615 0.00 0.00 39.69 2.40
343 350 7.928167 ACATACGAAGCAGAATGAATGAATCTA 59.072 33.333 0.00 0.00 39.69 1.98
344 351 8.768019 CATACGAAGCAGAATGAATGAATCTAA 58.232 33.333 0.00 0.00 39.69 2.10
345 352 7.615582 ACGAAGCAGAATGAATGAATCTAAA 57.384 32.000 0.00 0.00 39.69 1.85
346 353 7.467623 ACGAAGCAGAATGAATGAATCTAAAC 58.532 34.615 0.00 0.00 39.69 2.01
347 354 7.335422 ACGAAGCAGAATGAATGAATCTAAACT 59.665 33.333 0.00 0.00 39.69 2.66
348 355 8.180267 CGAAGCAGAATGAATGAATCTAAACTT 58.820 33.333 0.00 0.00 39.69 2.66
371 378 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
376 383 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
377 384 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
378 385 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
379 386 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
380 387 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
381 388 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
382 389 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
383 390 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
386 393 7.905604 ATACATCCGTATGTGGTTCATAATG 57.094 36.000 3.56 0.00 45.99 1.90
387 394 5.924356 ACATCCGTATGTGGTTCATAATGA 58.076 37.500 0.00 0.00 44.79 2.57
388 395 6.353323 ACATCCGTATGTGGTTCATAATGAA 58.647 36.000 0.00 0.00 44.79 2.57
389 396 6.826231 ACATCCGTATGTGGTTCATAATGAAA 59.174 34.615 0.00 0.00 44.79 2.69
390 397 7.502226 ACATCCGTATGTGGTTCATAATGAAAT 59.498 33.333 0.00 0.00 44.79 2.17
391 398 7.490962 TCCGTATGTGGTTCATAATGAAATC 57.509 36.000 0.00 0.00 38.22 2.17
392 399 7.279615 TCCGTATGTGGTTCATAATGAAATCT 58.720 34.615 0.00 0.00 38.22 2.40
393 400 7.441157 TCCGTATGTGGTTCATAATGAAATCTC 59.559 37.037 0.00 0.00 38.22 2.75
394 401 7.442364 CCGTATGTGGTTCATAATGAAATCTCT 59.558 37.037 0.00 0.00 38.22 3.10
395 402 9.476202 CGTATGTGGTTCATAATGAAATCTCTA 57.524 33.333 0.00 0.00 38.22 2.43
398 405 9.685276 ATGTGGTTCATAATGAAATCTCTACAA 57.315 29.630 0.00 0.00 38.22 2.41
399 406 9.513906 TGTGGTTCATAATGAAATCTCTACAAA 57.486 29.630 0.00 0.00 38.22 2.83
400 407 9.994432 GTGGTTCATAATGAAATCTCTACAAAG 57.006 33.333 0.00 0.00 38.22 2.77
401 408 9.958180 TGGTTCATAATGAAATCTCTACAAAGA 57.042 29.630 0.00 0.00 38.22 2.52
416 423 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
417 424 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
418 425 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
419 426 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
420 427 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
421 428 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
422 429 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
423 430 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
424 431 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
425 432 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
435 442 3.121738 ACGGAGGGAGTACAAACAAAG 57.878 47.619 0.00 0.00 0.00 2.77
457 464 2.233676 GCAAGAGTAAAATGGGTTGGGG 59.766 50.000 0.00 0.00 0.00 4.96
484 499 3.012518 CCACATTCCAGTAGAAGCAAGG 58.987 50.000 0.00 0.00 38.07 3.61
492 507 5.488341 TCCAGTAGAAGCAAGGAAACATAC 58.512 41.667 0.00 0.00 0.00 2.39
539 554 5.392995 TCCCAAATTCAATTCTGGAGTCAA 58.607 37.500 11.04 0.00 0.00 3.18
593 608 0.602638 CACCGAGTAGTTGGCAAGCA 60.603 55.000 0.00 0.00 0.00 3.91
709 724 2.684843 CGCAAAGCTCCAGTGCTCC 61.685 63.158 9.19 0.00 43.24 4.70
710 725 2.338785 GCAAAGCTCCAGTGCTCCC 61.339 63.158 0.00 0.00 43.24 4.30
711 726 1.377994 CAAAGCTCCAGTGCTCCCT 59.622 57.895 0.00 0.00 43.24 4.20
712 727 0.251077 CAAAGCTCCAGTGCTCCCTT 60.251 55.000 0.00 0.00 43.24 3.95
757 775 4.497674 GCAGCTAGCAAGAAATTCAGATGG 60.498 45.833 18.83 0.00 44.79 3.51
771 789 8.434589 AAATTCAGATGGAGAATTGGGTTAAA 57.565 30.769 0.00 0.00 42.98 1.52
784 802 6.987403 ATTGGGTTAAAACAGGCTCTAAAA 57.013 33.333 0.00 0.00 0.00 1.52
805 823 0.321671 TACTCACAGTGGGAGCTTGC 59.678 55.000 22.63 0.00 35.79 4.01
808 826 1.071987 CACAGTGGGAGCTTGCTCA 59.928 57.895 21.97 2.68 0.00 4.26
809 827 0.322277 CACAGTGGGAGCTTGCTCAT 60.322 55.000 21.97 4.41 0.00 2.90
811 829 1.378250 AGTGGGAGCTTGCTCATGC 60.378 57.895 21.97 11.71 40.20 4.06
812 830 1.378250 GTGGGAGCTTGCTCATGCT 60.378 57.895 21.97 9.60 43.37 3.79
813 831 0.107508 GTGGGAGCTTGCTCATGCTA 60.108 55.000 21.97 2.68 41.18 3.49
814 832 0.620030 TGGGAGCTTGCTCATGCTAA 59.380 50.000 21.97 0.68 41.18 3.09
815 833 1.004628 TGGGAGCTTGCTCATGCTAAA 59.995 47.619 21.97 0.00 41.18 1.85
816 834 1.403323 GGGAGCTTGCTCATGCTAAAC 59.597 52.381 21.97 4.25 41.18 2.01
817 835 2.363683 GGAGCTTGCTCATGCTAAACT 58.636 47.619 21.97 0.00 41.18 2.66
818 836 2.751806 GGAGCTTGCTCATGCTAAACTT 59.248 45.455 21.97 0.00 41.18 2.66
819 837 3.181502 GGAGCTTGCTCATGCTAAACTTC 60.182 47.826 21.97 0.00 41.18 3.01
820 838 3.415212 AGCTTGCTCATGCTAAACTTCA 58.585 40.909 8.28 0.00 39.62 3.02
821 839 3.439476 AGCTTGCTCATGCTAAACTTCAG 59.561 43.478 8.28 0.00 39.62 3.02
822 840 3.438087 GCTTGCTCATGCTAAACTTCAGA 59.562 43.478 0.00 0.00 40.48 3.27
823 841 4.437121 GCTTGCTCATGCTAAACTTCAGAG 60.437 45.833 0.00 0.00 40.48 3.35
824 842 3.005554 TGCTCATGCTAAACTTCAGAGC 58.994 45.455 0.00 0.00 45.23 4.09
825 843 2.354199 GCTCATGCTAAACTTCAGAGCC 59.646 50.000 0.00 0.00 40.68 4.70
828 846 0.685097 TGCTAAACTTCAGAGCCGGT 59.315 50.000 1.90 0.00 35.24 5.28
866 884 0.179000 CCTGGCTAGCTGGACGAATT 59.821 55.000 15.72 0.00 0.00 2.17
880 898 5.890334 TGGACGAATTGAAGCCATTAATTC 58.110 37.500 0.00 7.08 37.42 2.17
1017 1041 2.479566 TCAACTCAAGCATCTCCACC 57.520 50.000 0.00 0.00 0.00 4.61
1018 1042 1.699083 TCAACTCAAGCATCTCCACCA 59.301 47.619 0.00 0.00 0.00 4.17
1019 1043 2.082231 CAACTCAAGCATCTCCACCAG 58.918 52.381 0.00 0.00 0.00 4.00
1020 1044 1.356124 ACTCAAGCATCTCCACCAGT 58.644 50.000 0.00 0.00 0.00 4.00
1021 1045 1.701847 ACTCAAGCATCTCCACCAGTT 59.298 47.619 0.00 0.00 0.00 3.16
1100 1124 3.181440 TGGCAAGGTTCTTCTGATCAGTT 60.181 43.478 21.92 4.70 0.00 3.16
1102 1126 4.322567 GCAAGGTTCTTCTGATCAGTTCT 58.677 43.478 21.92 8.93 0.00 3.01
1222 1246 9.797556 TGTGTAGCACTGTATTTATTAGTACTG 57.202 33.333 5.39 0.00 35.11 2.74
1223 1247 9.798994 GTGTAGCACTGTATTTATTAGTACTGT 57.201 33.333 5.39 0.00 34.59 3.55
1270 1299 2.304092 TCTATTACAGCGATCCGTGGT 58.696 47.619 0.00 0.00 0.00 4.16
1283 1312 1.621317 TCCGTGGTTAAGCAGATCACA 59.379 47.619 7.79 0.00 0.00 3.58
1356 1385 7.394016 TGAACATAAACAGCATCCTTTCTAGA 58.606 34.615 0.00 0.00 0.00 2.43
1410 1439 4.560128 TCATGCTATCTAGATTTCACGGC 58.440 43.478 11.25 6.97 0.00 5.68
1436 1465 5.230182 TGATAGCTGCAATTCTGTATACCG 58.770 41.667 1.02 0.00 0.00 4.02
1462 1491 2.936032 GGGGGCTCACCAACTCCT 60.936 66.667 0.00 0.00 42.91 3.69
1498 1533 1.535687 AGGCTACAACCCGACACCT 60.536 57.895 0.00 0.00 0.00 4.00
1499 1534 0.251922 AGGCTACAACCCGACACCTA 60.252 55.000 0.00 0.00 0.00 3.08
1500 1535 0.108472 GGCTACAACCCGACACCTAC 60.108 60.000 0.00 0.00 0.00 3.18
1501 1536 0.604578 GCTACAACCCGACACCTACA 59.395 55.000 0.00 0.00 0.00 2.74
1502 1537 1.670967 GCTACAACCCGACACCTACAC 60.671 57.143 0.00 0.00 0.00 2.90
1503 1538 0.968405 TACAACCCGACACCTACACC 59.032 55.000 0.00 0.00 0.00 4.16
1504 1539 1.049855 ACAACCCGACACCTACACCA 61.050 55.000 0.00 0.00 0.00 4.17
1505 1540 0.107081 CAACCCGACACCTACACCAA 59.893 55.000 0.00 0.00 0.00 3.67
1506 1541 0.107268 AACCCGACACCTACACCAAC 59.893 55.000 0.00 0.00 0.00 3.77
1507 1542 0.761702 ACCCGACACCTACACCAACT 60.762 55.000 0.00 0.00 0.00 3.16
1508 1543 0.395312 CCCGACACCTACACCAACTT 59.605 55.000 0.00 0.00 0.00 2.66
1509 1544 1.619827 CCCGACACCTACACCAACTTA 59.380 52.381 0.00 0.00 0.00 2.24
1510 1545 2.611224 CCCGACACCTACACCAACTTAC 60.611 54.545 0.00 0.00 0.00 2.34
1511 1546 2.322161 CGACACCTACACCAACTTACG 58.678 52.381 0.00 0.00 0.00 3.18
1512 1547 2.680577 GACACCTACACCAACTTACGG 58.319 52.381 0.00 0.00 0.00 4.02
1513 1548 1.270465 ACACCTACACCAACTTACGGC 60.270 52.381 0.00 0.00 0.00 5.68
1514 1549 1.050204 ACCTACACCAACTTACGGCA 58.950 50.000 0.00 0.00 0.00 5.69
1515 1550 1.270465 ACCTACACCAACTTACGGCAC 60.270 52.381 0.00 0.00 0.00 5.01
1516 1551 1.001633 CCTACACCAACTTACGGCACT 59.998 52.381 0.00 0.00 0.00 4.40
1517 1552 2.231964 CCTACACCAACTTACGGCACTA 59.768 50.000 0.00 0.00 0.00 2.74
1518 1553 2.159327 ACACCAACTTACGGCACTAC 57.841 50.000 0.00 0.00 0.00 2.73
1519 1554 1.413445 ACACCAACTTACGGCACTACA 59.587 47.619 0.00 0.00 0.00 2.74
1520 1555 1.796459 CACCAACTTACGGCACTACAC 59.204 52.381 0.00 0.00 0.00 2.90
1521 1556 1.270465 ACCAACTTACGGCACTACACC 60.270 52.381 0.00 0.00 0.00 4.16
1522 1557 1.270412 CCAACTTACGGCACTACACCA 60.270 52.381 0.00 0.00 0.00 4.17
1577 1636 2.125673 GCACTACACCGACGCCAT 60.126 61.111 0.00 0.00 0.00 4.40
1606 1665 2.029623 ACTACACCGACGCCATCTTAT 58.970 47.619 0.00 0.00 0.00 1.73
1696 1755 1.888512 GCAAGTCCAAAGAAGCATGGA 59.111 47.619 0.00 0.00 43.32 3.41
1724 1783 2.030628 GGATCCTGCGAGTAAGAGCTAC 60.031 54.545 3.84 0.00 0.00 3.58
1790 1849 7.011016 CGGTTCTTAAATGGTTTTCTTTTGCTT 59.989 33.333 0.00 0.00 0.00 3.91
1791 1850 9.320352 GGTTCTTAAATGGTTTTCTTTTGCTTA 57.680 29.630 0.00 0.00 0.00 3.09
2111 2175 5.405797 GGTCTTCAAGAAGGCAAATGAATC 58.594 41.667 15.47 0.00 44.42 2.52
2132 2196 8.258007 TGAATCCCACTACTAGTTTTAGTCATG 58.742 37.037 0.00 0.00 40.55 3.07
2157 2223 5.944007 GGTGTTTCTTGGCTAAATCTTCCTA 59.056 40.000 0.00 0.00 0.00 2.94
2206 2272 8.663911 GCTATCTTGTGGCTTGATATATTTCTC 58.336 37.037 0.00 0.00 0.00 2.87
2258 2324 6.358178 TCACTATCTAAGAGATTCCGAGTGT 58.642 40.000 13.14 0.00 38.13 3.55
2271 2337 7.967908 AGATTCCGAGTGTAATAAATCCATCT 58.032 34.615 0.00 0.00 0.00 2.90
2272 2338 8.091449 AGATTCCGAGTGTAATAAATCCATCTC 58.909 37.037 0.00 0.00 0.00 2.75
2294 2360 9.803507 ATCTCTTTCCATTGCTTGATATCAATA 57.196 29.630 18.26 8.32 35.02 1.90
2345 2462 2.997485 AACTACGTACTCCGAACACC 57.003 50.000 0.00 0.00 40.70 4.16
2400 2517 6.214399 ACTAGTGCTACTCAGTTTACAACAC 58.786 40.000 0.00 0.00 0.00 3.32
2427 2546 9.167311 AGAAGTTTATAATGTCAGCTGTTTAGG 57.833 33.333 14.67 0.00 0.00 2.69
2431 2550 2.814805 ATGTCAGCTGTTTAGGGCAT 57.185 45.000 14.67 0.00 0.00 4.40
2445 2564 6.151985 TGTTTAGGGCATGTTTGGTTGTATAG 59.848 38.462 0.00 0.00 0.00 1.31
2446 2565 3.631250 AGGGCATGTTTGGTTGTATAGG 58.369 45.455 0.00 0.00 0.00 2.57
2447 2566 3.268334 AGGGCATGTTTGGTTGTATAGGA 59.732 43.478 0.00 0.00 0.00 2.94
2448 2567 4.020543 GGGCATGTTTGGTTGTATAGGAA 58.979 43.478 0.00 0.00 0.00 3.36
2449 2568 4.097892 GGGCATGTTTGGTTGTATAGGAAG 59.902 45.833 0.00 0.00 0.00 3.46
2450 2569 4.097892 GGCATGTTTGGTTGTATAGGAAGG 59.902 45.833 0.00 0.00 0.00 3.46
2451 2570 4.097892 GCATGTTTGGTTGTATAGGAAGGG 59.902 45.833 0.00 0.00 0.00 3.95
2452 2571 3.692690 TGTTTGGTTGTATAGGAAGGGC 58.307 45.455 0.00 0.00 0.00 5.19
2453 2572 3.021695 GTTTGGTTGTATAGGAAGGGCC 58.978 50.000 0.00 0.00 0.00 5.80
2462 2581 2.269241 GGAAGGGCCTGTTCGGAG 59.731 66.667 6.92 0.00 33.16 4.63
2463 2582 2.593956 GGAAGGGCCTGTTCGGAGT 61.594 63.158 6.92 0.00 33.16 3.85
2464 2583 1.079057 GAAGGGCCTGTTCGGAGTC 60.079 63.158 6.92 0.00 33.16 3.36
2465 2584 2.523453 GAAGGGCCTGTTCGGAGTCC 62.523 65.000 6.92 0.00 33.16 3.85
2466 2585 4.097361 GGGCCTGTTCGGAGTCCC 62.097 72.222 0.84 0.00 33.16 4.46
2467 2586 3.003763 GGCCTGTTCGGAGTCCCT 61.004 66.667 2.80 0.00 33.16 4.20
2468 2587 2.593956 GGCCTGTTCGGAGTCCCTT 61.594 63.158 2.80 0.00 33.16 3.95
2469 2588 1.079057 GCCTGTTCGGAGTCCCTTC 60.079 63.158 2.80 0.00 33.16 3.46
2470 2589 1.827399 GCCTGTTCGGAGTCCCTTCA 61.827 60.000 2.80 0.00 33.16 3.02
2471 2590 0.037232 CCTGTTCGGAGTCCCTTCAC 60.037 60.000 2.80 0.00 33.16 3.18
2472 2591 0.969894 CTGTTCGGAGTCCCTTCACT 59.030 55.000 2.80 0.00 0.00 3.41
2473 2592 0.966920 TGTTCGGAGTCCCTTCACTC 59.033 55.000 2.80 0.00 41.99 3.51
2478 2597 2.654802 GAGTCCCTTCACTCCACGA 58.345 57.895 0.00 0.00 37.43 4.35
2479 2598 0.244178 GAGTCCCTTCACTCCACGAC 59.756 60.000 0.00 0.00 37.43 4.34
2480 2599 0.178958 AGTCCCTTCACTCCACGACT 60.179 55.000 0.00 0.00 0.00 4.18
2481 2600 0.244178 GTCCCTTCACTCCACGACTC 59.756 60.000 0.00 0.00 0.00 3.36
2482 2601 0.898789 TCCCTTCACTCCACGACTCC 60.899 60.000 0.00 0.00 0.00 3.85
2483 2602 1.213013 CCTTCACTCCACGACTCCG 59.787 63.158 0.00 0.00 42.50 4.63
2484 2603 1.444553 CTTCACTCCACGACTCCGC 60.445 63.158 0.00 0.00 39.95 5.54
2485 2604 1.867919 CTTCACTCCACGACTCCGCT 61.868 60.000 0.00 0.00 39.95 5.52
2486 2605 1.863662 TTCACTCCACGACTCCGCTC 61.864 60.000 0.00 0.00 39.95 5.03
2487 2606 3.063084 ACTCCACGACTCCGCTCC 61.063 66.667 0.00 0.00 39.95 4.70
2488 2607 3.827898 CTCCACGACTCCGCTCCC 61.828 72.222 0.00 0.00 39.95 4.30
2518 2637 4.068302 GCTGCAGCTGAAAATCGC 57.932 55.556 31.33 2.19 38.21 4.58
2519 2638 1.866496 GCTGCAGCTGAAAATCGCG 60.866 57.895 31.33 0.00 38.21 5.87
2520 2639 1.226211 CTGCAGCTGAAAATCGCGG 60.226 57.895 20.43 0.24 0.00 6.46
2521 2640 1.638388 CTGCAGCTGAAAATCGCGGA 61.638 55.000 20.43 0.00 0.00 5.54
2522 2641 1.061570 GCAGCTGAAAATCGCGGAG 59.938 57.895 20.43 0.00 0.00 4.63
2536 2655 2.738147 CGGAGCGAGTAAACAGGTG 58.262 57.895 0.00 0.00 0.00 4.00
2537 2656 1.352156 CGGAGCGAGTAAACAGGTGC 61.352 60.000 0.00 0.00 0.00 5.01
2538 2657 0.037232 GGAGCGAGTAAACAGGTGCT 60.037 55.000 0.00 0.00 34.96 4.40
2539 2658 1.351153 GAGCGAGTAAACAGGTGCTC 58.649 55.000 0.00 0.00 41.57 4.26
2540 2659 0.037232 AGCGAGTAAACAGGTGCTCC 60.037 55.000 0.00 0.00 0.00 4.70
2541 2660 1.352156 GCGAGTAAACAGGTGCTCCG 61.352 60.000 0.00 0.00 39.05 4.63
2542 2661 1.352156 CGAGTAAACAGGTGCTCCGC 61.352 60.000 0.00 0.00 39.05 5.54
2543 2662 0.320421 GAGTAAACAGGTGCTCCGCA 60.320 55.000 0.00 0.00 39.05 5.69
2544 2663 0.320771 AGTAAACAGGTGCTCCGCAG 60.321 55.000 0.00 0.00 40.08 5.18
2545 2664 0.320421 GTAAACAGGTGCTCCGCAGA 60.320 55.000 0.00 0.00 40.08 4.26
2546 2665 0.613260 TAAACAGGTGCTCCGCAGAT 59.387 50.000 0.00 0.00 40.08 2.90
2547 2666 0.674895 AAACAGGTGCTCCGCAGATC 60.675 55.000 0.00 0.00 40.08 2.75
2548 2667 2.202987 CAGGTGCTCCGCAGATCC 60.203 66.667 0.00 0.00 40.08 3.36
2549 2668 2.364842 AGGTGCTCCGCAGATCCT 60.365 61.111 0.00 0.00 40.08 3.24
2550 2669 2.202987 GGTGCTCCGCAGATCCTG 60.203 66.667 0.00 0.00 40.08 3.86
2551 2670 2.202987 GTGCTCCGCAGATCCTGG 60.203 66.667 0.00 0.00 40.08 4.45
2552 2671 3.473647 TGCTCCGCAGATCCTGGG 61.474 66.667 4.31 4.31 42.81 4.45
2553 2672 3.157252 GCTCCGCAGATCCTGGGA 61.157 66.667 11.82 7.92 45.41 4.37
2554 2673 2.515071 GCTCCGCAGATCCTGGGAT 61.515 63.158 11.82 1.24 45.41 3.85
2555 2674 2.049627 GCTCCGCAGATCCTGGGATT 62.050 60.000 11.82 0.00 45.41 3.01
2556 2675 0.471617 CTCCGCAGATCCTGGGATTT 59.528 55.000 11.82 0.00 45.41 2.17
2557 2676 0.469917 TCCGCAGATCCTGGGATTTC 59.530 55.000 11.82 0.00 45.41 2.17
2558 2677 0.882042 CCGCAGATCCTGGGATTTCG 60.882 60.000 11.82 7.58 45.41 3.46
2559 2678 0.179073 CGCAGATCCTGGGATTTCGT 60.179 55.000 3.45 0.00 45.41 3.85
2560 2679 1.303309 GCAGATCCTGGGATTTCGTG 58.697 55.000 3.45 1.80 34.60 4.35
2561 2680 1.959042 CAGATCCTGGGATTTCGTGG 58.041 55.000 3.45 0.00 34.60 4.94
2562 2681 1.486310 CAGATCCTGGGATTTCGTGGA 59.514 52.381 3.45 0.00 34.60 4.02
2563 2682 1.765314 AGATCCTGGGATTTCGTGGAG 59.235 52.381 3.45 0.00 34.60 3.86
2564 2683 0.181350 ATCCTGGGATTTCGTGGAGC 59.819 55.000 0.00 0.00 0.00 4.70
2565 2684 0.909610 TCCTGGGATTTCGTGGAGCT 60.910 55.000 0.00 0.00 0.00 4.09
2566 2685 0.745845 CCTGGGATTTCGTGGAGCTG 60.746 60.000 0.00 0.00 0.00 4.24
2567 2686 0.745845 CTGGGATTTCGTGGAGCTGG 60.746 60.000 0.00 0.00 0.00 4.85
2568 2687 1.299976 GGGATTTCGTGGAGCTGGT 59.700 57.895 0.00 0.00 0.00 4.00
2569 2688 1.026718 GGGATTTCGTGGAGCTGGTG 61.027 60.000 0.00 0.00 0.00 4.17
2570 2689 1.026718 GGATTTCGTGGAGCTGGTGG 61.027 60.000 0.00 0.00 0.00 4.61
2571 2690 0.036388 GATTTCGTGGAGCTGGTGGA 60.036 55.000 0.00 0.00 0.00 4.02
2572 2691 0.620556 ATTTCGTGGAGCTGGTGGAT 59.379 50.000 0.00 0.00 0.00 3.41
2573 2692 0.400213 TTTCGTGGAGCTGGTGGATT 59.600 50.000 0.00 0.00 0.00 3.01
2574 2693 0.321564 TTCGTGGAGCTGGTGGATTG 60.322 55.000 0.00 0.00 0.00 2.67
2575 2694 2.401766 CGTGGAGCTGGTGGATTGC 61.402 63.158 0.00 0.00 0.00 3.56
2576 2695 2.048603 GTGGAGCTGGTGGATTGCC 61.049 63.158 0.00 0.00 0.00 4.52
2577 2696 2.825836 GGAGCTGGTGGATTGCCG 60.826 66.667 0.00 0.00 36.79 5.69
2578 2697 2.268920 GAGCTGGTGGATTGCCGA 59.731 61.111 0.00 0.00 36.79 5.54
2579 2698 1.377202 GAGCTGGTGGATTGCCGAA 60.377 57.895 0.00 0.00 36.79 4.30
2580 2699 1.648467 GAGCTGGTGGATTGCCGAAC 61.648 60.000 0.00 0.00 36.79 3.95
2581 2700 1.971167 GCTGGTGGATTGCCGAACA 60.971 57.895 0.00 0.00 36.79 3.18
2582 2701 1.926511 GCTGGTGGATTGCCGAACAG 61.927 60.000 0.00 0.00 34.86 3.16
2583 2702 1.926511 CTGGTGGATTGCCGAACAGC 61.927 60.000 0.00 0.00 36.79 4.40
2584 2703 1.675641 GGTGGATTGCCGAACAGCT 60.676 57.895 0.00 0.00 36.79 4.24
2585 2704 1.648467 GGTGGATTGCCGAACAGCTC 61.648 60.000 0.00 0.00 36.79 4.09
2586 2705 1.377202 TGGATTGCCGAACAGCTCC 60.377 57.895 0.00 0.00 36.79 4.70
2587 2706 2.464459 GGATTGCCGAACAGCTCCG 61.464 63.158 0.00 0.00 0.00 4.63
2588 2707 1.447838 GATTGCCGAACAGCTCCGA 60.448 57.895 1.70 0.00 0.00 4.55
2589 2708 1.003839 ATTGCCGAACAGCTCCGAA 60.004 52.632 1.70 0.00 0.00 4.30
2590 2709 0.605319 ATTGCCGAACAGCTCCGAAA 60.605 50.000 1.70 0.00 0.00 3.46
2591 2710 0.605319 TTGCCGAACAGCTCCGAAAT 60.605 50.000 1.70 0.00 0.00 2.17
2592 2711 0.248012 TGCCGAACAGCTCCGAAATA 59.752 50.000 1.70 0.00 0.00 1.40
2593 2712 1.134521 TGCCGAACAGCTCCGAAATAT 60.135 47.619 1.70 0.00 0.00 1.28
2594 2713 1.527311 GCCGAACAGCTCCGAAATATC 59.473 52.381 1.70 0.00 0.00 1.63
2595 2714 2.821546 CCGAACAGCTCCGAAATATCA 58.178 47.619 1.70 0.00 0.00 2.15
2596 2715 2.540101 CCGAACAGCTCCGAAATATCAC 59.460 50.000 1.70 0.00 0.00 3.06
2597 2716 2.540101 CGAACAGCTCCGAAATATCACC 59.460 50.000 0.00 0.00 0.00 4.02
2598 2717 3.531538 GAACAGCTCCGAAATATCACCA 58.468 45.455 0.00 0.00 0.00 4.17
2599 2718 3.845781 ACAGCTCCGAAATATCACCAT 57.154 42.857 0.00 0.00 0.00 3.55
2600 2719 4.156455 ACAGCTCCGAAATATCACCATT 57.844 40.909 0.00 0.00 0.00 3.16
2625 2744 0.537371 ACACCTACTTGTGGCCTTGC 60.537 55.000 3.32 0.00 40.62 4.01
2657 2776 5.519927 GCAAATTGTGACAAGCTAACACTTT 59.480 36.000 3.74 9.13 35.83 2.66
2660 2779 9.891828 CAAATTGTGACAAGCTAACACTTTATA 57.108 29.630 3.74 0.00 35.83 0.98
2700 2819 2.029110 CCACACCATAGGCAAGTTTTGG 60.029 50.000 0.00 0.00 0.00 3.28
2717 2836 4.599047 TTTGGCAAAACATTGGGTCTAG 57.401 40.909 10.83 0.00 0.00 2.43
2726 2845 0.912486 ATTGGGTCTAGGACAGGTGC 59.088 55.000 0.14 0.00 33.68 5.01
2727 2846 0.178903 TTGGGTCTAGGACAGGTGCT 60.179 55.000 0.00 0.00 33.68 4.40
2761 2881 5.789643 AAACTATGGCATGACAAAACTGT 57.210 34.783 4.70 0.00 0.00 3.55
2763 2883 7.466746 AAACTATGGCATGACAAAACTGTAT 57.533 32.000 4.70 0.00 0.00 2.29
2817 2937 4.274705 TCGCAAATTGACAAAGCAGTCTAA 59.725 37.500 0.00 0.54 39.27 2.10
2831 2951 4.099266 AGCAGTCTAACAAATGCCACAAAA 59.901 37.500 0.00 0.00 39.51 2.44
2893 3014 5.660864 ACCTTGTTCTTGAATCCCAGAAAAA 59.339 36.000 0.00 0.00 0.00 1.94
2906 3027 6.215495 TCCCAGAAAAACCTGTAACAAAAG 57.785 37.500 0.00 0.00 32.43 2.27
2907 3028 5.717654 TCCCAGAAAAACCTGTAACAAAAGT 59.282 36.000 0.00 0.00 32.43 2.66
2910 3031 8.852135 CCCAGAAAAACCTGTAACAAAAGTATA 58.148 33.333 0.00 0.00 32.43 1.47
2928 3049 7.502060 AAGTATATGTTCCCCTGATATCCTG 57.498 40.000 0.00 0.00 0.00 3.86
2934 3055 6.091076 TGTTCCCCTGATATCCTGAATTTT 57.909 37.500 0.00 0.00 0.00 1.82
2935 3056 5.893255 TGTTCCCCTGATATCCTGAATTTTG 59.107 40.000 0.00 0.00 0.00 2.44
2963 3084 4.889409 TCAACCTTTGAATCTTGCTCTTGT 59.111 37.500 0.00 0.00 36.59 3.16
2983 3104 5.522315 TGTACCCCAAAAATCCTATGACA 57.478 39.130 0.00 0.00 0.00 3.58
2990 3111 6.229733 CCCAAAAATCCTATGACAAAAGCAA 58.770 36.000 0.00 0.00 0.00 3.91
3024 3145 5.690865 TGGGTCAGAGAAACAAGTGTAATT 58.309 37.500 0.00 0.00 0.00 1.40
3025 3146 5.530915 TGGGTCAGAGAAACAAGTGTAATTG 59.469 40.000 0.00 0.00 36.22 2.32
3027 3148 6.293462 GGGTCAGAGAAACAAGTGTAATTGTC 60.293 42.308 0.00 0.00 42.49 3.18
3033 3154 7.227512 AGAGAAACAAGTGTAATTGTCCAGAAG 59.772 37.037 0.00 0.00 42.49 2.85
3049 3170 5.419542 TCCAGAAGTTTGGATAACTCATCG 58.580 41.667 3.51 0.00 42.24 3.84
3062 3183 4.761235 AACTCATCGAACAACTAGTCGA 57.239 40.909 6.83 6.83 35.42 4.20
3065 3186 6.621316 ACTCATCGAACAACTAGTCGATAT 57.379 37.500 14.60 4.08 37.94 1.63
3070 3191 8.068380 TCATCGAACAACTAGTCGATATAACAG 58.932 37.037 14.60 4.68 37.94 3.16
3094 3224 8.792633 CAGAACTTCACATAAAACAAGGGATTA 58.207 33.333 0.00 0.00 0.00 1.75
3108 3238 6.548321 ACAAGGGATTAGTGTTTGATACCAA 58.452 36.000 0.00 0.00 0.00 3.67
3173 3303 6.281405 TCAGTACTTCTCCAAAAGAGTCAAC 58.719 40.000 0.00 0.00 43.71 3.18
3265 3396 6.099341 AGTCAGTCAACATTTTGGTGTTTTC 58.901 36.000 0.00 0.00 40.17 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.266989 GCTGTGGTGCCTGTAACTTTC 59.733 52.381 0.00 0.00 0.00 2.62
62 69 4.328440 CGCTTCTACCTTCATCAGTGAAAG 59.672 45.833 0.00 0.00 43.39 2.62
68 75 4.686972 TGATTCGCTTCTACCTTCATCAG 58.313 43.478 0.00 0.00 0.00 2.90
91 98 5.043248 CGCTTCAAATGTTTCTGTTCCTTT 58.957 37.500 0.00 0.00 0.00 3.11
114 121 6.868339 AGTTTTGCTTATTACCACAGATTTGC 59.132 34.615 0.00 0.00 0.00 3.68
125 132 8.361889 TGGGGAAAAGTAAGTTTTGCTTATTAC 58.638 33.333 7.32 0.00 43.94 1.89
147 154 7.954835 TGCATTTCATCTTTAGATAAATGGGG 58.045 34.615 20.76 9.03 36.84 4.96
153 160 9.399797 AGTGTCATGCATTTCATCTTTAGATAA 57.600 29.630 0.00 0.00 31.79 1.75
173 180 3.853207 AGTCTAACCCCTGTAAGTGTCA 58.147 45.455 0.00 0.00 0.00 3.58
180 187 4.604784 AGCTAGAAGTCTAACCCCTGTA 57.395 45.455 0.00 0.00 0.00 2.74
186 193 5.292345 GCTTTTGCTAGCTAGAAGTCTAACC 59.708 44.000 25.15 3.69 43.35 2.85
223 230 0.961019 CCAACTGGAATGTGGTGTGG 59.039 55.000 0.00 0.00 37.39 4.17
264 271 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
265 272 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
266 273 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
267 274 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
268 275 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
269 276 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
270 277 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
272 279 9.257651 CCTACAAAGACTTATATTTAGGAACGG 57.742 37.037 0.00 0.00 0.00 4.44
273 280 9.257651 CCCTACAAAGACTTATATTTAGGAACG 57.742 37.037 0.00 0.00 0.00 3.95
284 291 8.440771 CCTAATGGAATCCCTACAAAGACTTAT 58.559 37.037 0.00 0.00 34.57 1.73
285 292 7.404980 ACCTAATGGAATCCCTACAAAGACTTA 59.595 37.037 0.00 0.00 37.04 2.24
286 293 6.217693 ACCTAATGGAATCCCTACAAAGACTT 59.782 38.462 0.00 0.00 37.04 3.01
287 294 5.731678 ACCTAATGGAATCCCTACAAAGACT 59.268 40.000 0.00 0.00 37.04 3.24
288 295 5.823045 CACCTAATGGAATCCCTACAAAGAC 59.177 44.000 0.00 0.00 37.04 3.01
289 296 6.001449 CACCTAATGGAATCCCTACAAAGA 57.999 41.667 0.00 0.00 37.04 2.52
304 311 4.982916 GCTTCGTATGTAGTCCACCTAATG 59.017 45.833 0.00 0.00 0.00 1.90
305 312 4.647853 TGCTTCGTATGTAGTCCACCTAAT 59.352 41.667 0.00 0.00 0.00 1.73
306 313 4.018490 TGCTTCGTATGTAGTCCACCTAA 58.982 43.478 0.00 0.00 0.00 2.69
307 314 3.623703 TGCTTCGTATGTAGTCCACCTA 58.376 45.455 0.00 0.00 0.00 3.08
308 315 2.427453 CTGCTTCGTATGTAGTCCACCT 59.573 50.000 0.00 0.00 0.00 4.00
309 316 2.426024 TCTGCTTCGTATGTAGTCCACC 59.574 50.000 0.00 0.00 0.00 4.61
310 317 3.777465 TCTGCTTCGTATGTAGTCCAC 57.223 47.619 0.00 0.00 0.00 4.02
311 318 4.401202 TCATTCTGCTTCGTATGTAGTCCA 59.599 41.667 0.00 0.00 0.00 4.02
312 319 4.933330 TCATTCTGCTTCGTATGTAGTCC 58.067 43.478 0.00 0.00 0.00 3.85
313 320 6.697455 TCATTCATTCTGCTTCGTATGTAGTC 59.303 38.462 0.00 0.00 0.00 2.59
314 321 6.573434 TCATTCATTCTGCTTCGTATGTAGT 58.427 36.000 0.00 0.00 0.00 2.73
315 322 7.468922 TTCATTCATTCTGCTTCGTATGTAG 57.531 36.000 0.00 0.00 0.00 2.74
316 323 7.928167 AGATTCATTCATTCTGCTTCGTATGTA 59.072 33.333 0.00 0.00 0.00 2.29
317 324 6.765036 AGATTCATTCATTCTGCTTCGTATGT 59.235 34.615 0.00 0.00 0.00 2.29
318 325 7.187244 AGATTCATTCATTCTGCTTCGTATG 57.813 36.000 0.00 0.00 0.00 2.39
319 326 8.893219 TTAGATTCATTCATTCTGCTTCGTAT 57.107 30.769 0.00 0.00 0.00 3.06
320 327 8.604035 GTTTAGATTCATTCATTCTGCTTCGTA 58.396 33.333 0.00 0.00 0.00 3.43
321 328 7.335422 AGTTTAGATTCATTCATTCTGCTTCGT 59.665 33.333 0.00 0.00 0.00 3.85
322 329 7.692088 AGTTTAGATTCATTCATTCTGCTTCG 58.308 34.615 0.00 0.00 0.00 3.79
345 352 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
349 356 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
350 357 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
351 358 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
352 359 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
353 360 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
354 361 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
355 362 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
356 363 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
357 364 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
360 367 9.599866 CATTATGAACCACATACGGATGTATAT 57.400 33.333 14.23 1.68 44.82 0.86
361 368 8.808092 TCATTATGAACCACATACGGATGTATA 58.192 33.333 14.23 4.47 44.82 1.47
362 369 7.676004 TCATTATGAACCACATACGGATGTAT 58.324 34.615 14.23 5.54 44.82 2.29
363 370 7.056844 TCATTATGAACCACATACGGATGTA 57.943 36.000 14.23 0.00 44.82 2.29
364 371 6.353323 TTCATTATGAACCACATACGGATGT 58.647 36.000 7.68 7.68 40.62 3.06
365 372 6.859420 TTCATTATGAACCACATACGGATG 57.141 37.500 5.94 5.94 40.62 3.51
366 373 7.939039 AGATTTCATTATGAACCACATACGGAT 59.061 33.333 7.19 0.00 40.62 4.18
367 374 7.279615 AGATTTCATTATGAACCACATACGGA 58.720 34.615 7.19 0.00 40.62 4.69
368 375 7.442364 AGAGATTTCATTATGAACCACATACGG 59.558 37.037 7.19 0.00 40.62 4.02
369 376 8.370493 AGAGATTTCATTATGAACCACATACG 57.630 34.615 7.19 0.00 40.62 3.06
372 379 9.685276 TTGTAGAGATTTCATTATGAACCACAT 57.315 29.630 7.19 0.00 35.89 3.21
373 380 9.513906 TTTGTAGAGATTTCATTATGAACCACA 57.486 29.630 7.19 0.00 35.89 4.17
374 381 9.994432 CTTTGTAGAGATTTCATTATGAACCAC 57.006 33.333 7.19 2.67 35.89 4.16
375 382 9.958180 TCTTTGTAGAGATTTCATTATGAACCA 57.042 29.630 7.19 0.00 35.89 3.67
390 397 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
391 398 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
392 399 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
393 400 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
394 401 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
395 402 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
396 403 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
397 404 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
398 405 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
399 406 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
400 407 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
401 408 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
402 409 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
403 410 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
404 411 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
405 412 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
406 413 3.449737 TGTACTCCCTCCGTTCCTAAATG 59.550 47.826 0.00 0.00 0.00 2.32
407 414 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
408 415 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
409 416 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
410 417 2.827921 GTTTGTACTCCCTCCGTTCCTA 59.172 50.000 0.00 0.00 0.00 2.94
411 418 1.622312 GTTTGTACTCCCTCCGTTCCT 59.378 52.381 0.00 0.00 0.00 3.36
412 419 1.345415 TGTTTGTACTCCCTCCGTTCC 59.655 52.381 0.00 0.00 0.00 3.62
413 420 2.825861 TGTTTGTACTCCCTCCGTTC 57.174 50.000 0.00 0.00 0.00 3.95
414 421 3.473625 CTTTGTTTGTACTCCCTCCGTT 58.526 45.455 0.00 0.00 0.00 4.44
415 422 2.224450 CCTTTGTTTGTACTCCCTCCGT 60.224 50.000 0.00 0.00 0.00 4.69
416 423 2.423577 CCTTTGTTTGTACTCCCTCCG 58.576 52.381 0.00 0.00 0.00 4.63
417 424 2.160205 GCCTTTGTTTGTACTCCCTCC 58.840 52.381 0.00 0.00 0.00 4.30
418 425 2.858745 TGCCTTTGTTTGTACTCCCTC 58.141 47.619 0.00 0.00 0.00 4.30
419 426 3.117663 TCTTGCCTTTGTTTGTACTCCCT 60.118 43.478 0.00 0.00 0.00 4.20
420 427 3.219281 TCTTGCCTTTGTTTGTACTCCC 58.781 45.455 0.00 0.00 0.00 4.30
421 428 3.883489 ACTCTTGCCTTTGTTTGTACTCC 59.117 43.478 0.00 0.00 0.00 3.85
422 429 6.613755 TTACTCTTGCCTTTGTTTGTACTC 57.386 37.500 0.00 0.00 0.00 2.59
423 430 7.399245 TTTTACTCTTGCCTTTGTTTGTACT 57.601 32.000 0.00 0.00 0.00 2.73
424 431 7.169140 CCATTTTACTCTTGCCTTTGTTTGTAC 59.831 37.037 0.00 0.00 0.00 2.90
425 432 7.206687 CCATTTTACTCTTGCCTTTGTTTGTA 58.793 34.615 0.00 0.00 0.00 2.41
435 442 2.233676 CCCAACCCATTTTACTCTTGCC 59.766 50.000 0.00 0.00 0.00 4.52
457 464 4.446371 CTTCTACTGGAATGTGGGATGAC 58.554 47.826 0.00 0.00 33.01 3.06
466 481 4.761739 TGTTTCCTTGCTTCTACTGGAATG 59.238 41.667 0.00 0.00 36.78 2.67
484 499 2.525105 ACATGGTGGGGGTATGTTTC 57.475 50.000 0.00 0.00 31.38 2.78
539 554 2.408271 TCGAGCTGGATTTGATGCTT 57.592 45.000 0.00 0.00 35.76 3.91
593 608 4.574828 CCCGAAGATTTAATTGTGATCGGT 59.425 41.667 9.65 0.00 45.23 4.69
709 724 4.408921 TCATGTTGGTAGATGGTAGGAAGG 59.591 45.833 0.00 0.00 0.00 3.46
710 725 5.453903 CCTCATGTTGGTAGATGGTAGGAAG 60.454 48.000 0.00 0.00 0.00 3.46
711 726 4.408921 CCTCATGTTGGTAGATGGTAGGAA 59.591 45.833 0.00 0.00 0.00 3.36
712 727 3.967326 CCTCATGTTGGTAGATGGTAGGA 59.033 47.826 0.00 0.00 0.00 2.94
743 761 6.259123 ACCCAATTCTCCATCTGAATTTCTT 58.741 36.000 0.00 0.00 40.76 2.52
757 775 4.767409 AGAGCCTGTTTTAACCCAATTCTC 59.233 41.667 0.00 0.00 0.00 2.87
771 789 6.428159 CACTGTGAGTATTTTTAGAGCCTGTT 59.572 38.462 0.32 0.00 0.00 3.16
784 802 2.616510 GCAAGCTCCCACTGTGAGTATT 60.617 50.000 9.86 0.00 32.31 1.89
805 823 2.606725 CGGCTCTGAAGTTTAGCATGAG 59.393 50.000 0.00 0.00 38.01 2.90
808 826 1.279271 ACCGGCTCTGAAGTTTAGCAT 59.721 47.619 0.00 0.00 38.01 3.79
809 827 0.685097 ACCGGCTCTGAAGTTTAGCA 59.315 50.000 0.00 0.00 38.01 3.49
811 829 2.611518 CTCACCGGCTCTGAAGTTTAG 58.388 52.381 0.00 0.00 0.00 1.85
812 830 1.337823 GCTCACCGGCTCTGAAGTTTA 60.338 52.381 0.00 0.00 0.00 2.01
813 831 0.603975 GCTCACCGGCTCTGAAGTTT 60.604 55.000 0.00 0.00 0.00 2.66
814 832 1.004440 GCTCACCGGCTCTGAAGTT 60.004 57.895 0.00 0.00 0.00 2.66
815 833 2.164865 CTGCTCACCGGCTCTGAAGT 62.165 60.000 0.00 0.00 0.00 3.01
816 834 1.447489 CTGCTCACCGGCTCTGAAG 60.447 63.158 0.00 0.00 0.00 3.02
817 835 1.260538 ATCTGCTCACCGGCTCTGAA 61.261 55.000 0.00 0.00 0.00 3.02
818 836 1.670949 GATCTGCTCACCGGCTCTGA 61.671 60.000 0.00 0.00 0.00 3.27
819 837 1.227205 GATCTGCTCACCGGCTCTG 60.227 63.158 0.00 0.00 0.00 3.35
820 838 1.683707 TGATCTGCTCACCGGCTCT 60.684 57.895 0.00 0.00 0.00 4.09
821 839 2.895680 TGATCTGCTCACCGGCTC 59.104 61.111 0.00 0.00 0.00 4.70
828 846 0.460811 GCATGACGGTGATCTGCTCA 60.461 55.000 0.00 0.00 0.00 4.26
866 884 5.893255 AGTTGGCTATGAATTAATGGCTTCA 59.107 36.000 10.70 0.00 34.67 3.02
880 898 5.720202 TCACACTGTTAGTAGTTGGCTATG 58.280 41.667 0.00 0.00 0.00 2.23
1017 1041 3.624861 AGCAACTGAACTGAACTGAACTG 59.375 43.478 0.00 0.00 0.00 3.16
1018 1042 3.878778 AGCAACTGAACTGAACTGAACT 58.121 40.909 0.00 0.00 0.00 3.01
1019 1043 4.622701 AAGCAACTGAACTGAACTGAAC 57.377 40.909 0.00 0.00 0.00 3.18
1020 1044 6.767902 AGAATAAGCAACTGAACTGAACTGAA 59.232 34.615 0.00 0.00 0.00 3.02
1021 1045 6.203530 CAGAATAAGCAACTGAACTGAACTGA 59.796 38.462 0.00 0.00 34.07 3.41
1100 1124 1.352622 ACAAGCCCCACCAAGACAGA 61.353 55.000 0.00 0.00 0.00 3.41
1102 1126 0.032615 AAACAAGCCCCACCAAGACA 60.033 50.000 0.00 0.00 0.00 3.41
1222 1246 6.528423 CAGTGCAGTGTTACTCTATGAAGTAC 59.472 42.308 13.67 0.00 31.57 2.73
1223 1247 6.621613 CAGTGCAGTGTTACTCTATGAAGTA 58.378 40.000 13.67 0.00 0.00 2.24
1224 1248 5.473931 CAGTGCAGTGTTACTCTATGAAGT 58.526 41.667 13.67 0.00 0.00 3.01
1225 1249 4.328440 GCAGTGCAGTGTTACTCTATGAAG 59.672 45.833 22.22 0.00 0.00 3.02
1226 1250 4.245660 GCAGTGCAGTGTTACTCTATGAA 58.754 43.478 22.22 0.00 0.00 2.57
1237 1261 4.186926 CTGTAATAGATGCAGTGCAGTGT 58.813 43.478 24.20 12.46 43.65 3.55
1348 1377 8.307483 TGTTCTCAGTCCTTATTGTCTAGAAAG 58.693 37.037 0.00 0.00 0.00 2.62
1356 1385 5.316167 TGCATTGTTCTCAGTCCTTATTGT 58.684 37.500 0.00 0.00 0.00 2.71
1410 1439 6.146837 GGTATACAGAATTGCAGCTATCAGTG 59.853 42.308 5.01 0.00 0.00 3.66
1436 1465 1.527370 GTGAGCCCCCATCTGGTAC 59.473 63.158 0.00 0.00 0.00 3.34
1462 1491 1.001120 TCCTCCTGACCCATGCGTA 59.999 57.895 0.00 0.00 0.00 4.42
1498 1533 2.627221 TGTAGTGCCGTAAGTTGGTGTA 59.373 45.455 0.00 0.00 0.00 2.90
1499 1534 1.413445 TGTAGTGCCGTAAGTTGGTGT 59.587 47.619 0.00 0.00 0.00 4.16
1500 1535 1.796459 GTGTAGTGCCGTAAGTTGGTG 59.204 52.381 0.00 0.00 0.00 4.17
1501 1536 1.270465 GGTGTAGTGCCGTAAGTTGGT 60.270 52.381 0.00 0.00 0.00 3.67
1502 1537 1.270412 TGGTGTAGTGCCGTAAGTTGG 60.270 52.381 0.00 0.00 0.00 3.77
1503 1538 2.157834 TGGTGTAGTGCCGTAAGTTG 57.842 50.000 0.00 0.00 0.00 3.16
1504 1539 2.158928 TGTTGGTGTAGTGCCGTAAGTT 60.159 45.455 0.00 0.00 0.00 2.66
1505 1540 1.413445 TGTTGGTGTAGTGCCGTAAGT 59.587 47.619 0.00 0.00 0.00 2.24
1506 1541 1.796459 GTGTTGGTGTAGTGCCGTAAG 59.204 52.381 0.00 0.00 0.00 2.34
1507 1542 1.540797 GGTGTTGGTGTAGTGCCGTAA 60.541 52.381 0.00 0.00 0.00 3.18
1508 1543 0.033781 GGTGTTGGTGTAGTGCCGTA 59.966 55.000 0.00 0.00 0.00 4.02
1509 1544 1.227734 GGTGTTGGTGTAGTGCCGT 60.228 57.895 0.00 0.00 0.00 5.68
1510 1545 0.816018 TTGGTGTTGGTGTAGTGCCG 60.816 55.000 0.00 0.00 0.00 5.69
1511 1546 0.666374 GTTGGTGTTGGTGTAGTGCC 59.334 55.000 0.00 0.00 0.00 5.01
1512 1547 1.675552 AGTTGGTGTTGGTGTAGTGC 58.324 50.000 0.00 0.00 0.00 4.40
1513 1548 3.246699 CGTAAGTTGGTGTTGGTGTAGTG 59.753 47.826 0.00 0.00 0.00 2.74
1514 1549 3.460103 CGTAAGTTGGTGTTGGTGTAGT 58.540 45.455 0.00 0.00 0.00 2.73
1515 1550 2.803956 CCGTAAGTTGGTGTTGGTGTAG 59.196 50.000 0.00 0.00 0.00 2.74
1516 1551 2.836262 CCGTAAGTTGGTGTTGGTGTA 58.164 47.619 0.00 0.00 0.00 2.90
1517 1552 1.670791 CCGTAAGTTGGTGTTGGTGT 58.329 50.000 0.00 0.00 0.00 4.16
1518 1553 0.309612 GCCGTAAGTTGGTGTTGGTG 59.690 55.000 0.00 0.00 0.00 4.17
1519 1554 0.107116 TGCCGTAAGTTGGTGTTGGT 60.107 50.000 0.00 0.00 0.00 3.67
1520 1555 0.309612 GTGCCGTAAGTTGGTGTTGG 59.690 55.000 0.00 0.00 0.00 3.77
1521 1556 1.305201 AGTGCCGTAAGTTGGTGTTG 58.695 50.000 0.00 0.00 0.00 3.33
1522 1557 2.158928 TGTAGTGCCGTAAGTTGGTGTT 60.159 45.455 0.00 0.00 0.00 3.32
1615 1674 2.960129 CCGTAAGATGGCGTCGGC 60.960 66.667 12.58 12.58 43.02 5.54
1696 1755 4.101585 TCTTACTCGCAGGATCCAATGAAT 59.898 41.667 15.82 0.21 0.00 2.57
1738 1797 6.902341 TGCTTTGTGATGTTTGATACTTCTC 58.098 36.000 0.00 0.00 33.32 2.87
1790 1849 6.094048 GTGATTCTTCCAGTAGCTGCATTTTA 59.906 38.462 4.12 0.00 0.00 1.52
1791 1850 5.012239 TGATTCTTCCAGTAGCTGCATTTT 58.988 37.500 4.12 0.00 0.00 1.82
1792 1851 4.397417 GTGATTCTTCCAGTAGCTGCATTT 59.603 41.667 4.12 0.00 0.00 2.32
1793 1852 3.944015 GTGATTCTTCCAGTAGCTGCATT 59.056 43.478 4.12 0.00 0.00 3.56
1794 1853 3.539604 GTGATTCTTCCAGTAGCTGCAT 58.460 45.455 4.12 0.00 0.00 3.96
2031 2095 1.470098 GCCACGATGATGCAGTTCTTT 59.530 47.619 0.00 0.00 0.00 2.52
2035 2099 2.108514 CGGCCACGATGATGCAGTT 61.109 57.895 2.24 0.00 44.60 3.16
2044 2108 2.680352 AGAGGTCACGGCCACGAT 60.680 61.111 2.24 0.00 44.60 3.73
2111 2175 5.671493 CCCATGACTAAAACTAGTAGTGGG 58.329 45.833 2.90 14.95 42.86 4.61
2132 2196 4.082190 GGAAGATTTAGCCAAGAAACACCC 60.082 45.833 0.00 0.00 0.00 4.61
2157 2223 2.030363 TCAATCAAGAAAAATGCGCGGT 60.030 40.909 8.83 0.00 0.00 5.68
2244 2310 7.361457 TGGATTTATTACACTCGGAATCTCT 57.639 36.000 0.00 0.00 0.00 3.10
2247 2313 8.091449 AGAGATGGATTTATTACACTCGGAATC 58.909 37.037 0.00 0.00 0.00 2.52
2251 2317 7.171678 GGAAAGAGATGGATTTATTACACTCGG 59.828 40.741 0.00 0.00 0.00 4.63
2252 2318 7.710907 TGGAAAGAGATGGATTTATTACACTCG 59.289 37.037 0.00 0.00 0.00 4.18
2258 2324 9.425248 AAGCAATGGAAAGAGATGGATTTATTA 57.575 29.630 0.00 0.00 0.00 0.98
2331 2448 1.855513 TTTGTGGTGTTCGGAGTACG 58.144 50.000 0.00 0.00 46.11 3.67
2372 2489 6.002082 TGTAAACTGAGTAGCACTAGTCTGA 58.998 40.000 20.07 0.99 37.66 3.27
2400 2517 9.979270 CTAAACAGCTGACATTATAAACTTCTG 57.021 33.333 23.35 0.00 0.00 3.02
2427 2546 4.097892 CCTTCCTATACAACCAAACATGCC 59.902 45.833 0.00 0.00 0.00 4.40
2431 2550 3.562609 GGCCCTTCCTATACAACCAAACA 60.563 47.826 0.00 0.00 0.00 2.83
2445 2564 2.269241 CTCCGAACAGGCCCTTCC 59.731 66.667 0.00 0.00 40.77 3.46
2446 2565 1.079057 GACTCCGAACAGGCCCTTC 60.079 63.158 0.00 0.00 40.77 3.46
2447 2566 2.593956 GGACTCCGAACAGGCCCTT 61.594 63.158 0.00 0.00 35.10 3.95
2448 2567 3.003763 GGACTCCGAACAGGCCCT 61.004 66.667 0.00 0.00 35.10 5.19
2450 2569 2.523453 GAAGGGACTCCGAACAGGCC 62.523 65.000 0.00 0.00 41.65 5.19
2451 2570 1.079057 GAAGGGACTCCGAACAGGC 60.079 63.158 0.00 0.00 38.49 4.85
2452 2571 0.037232 GTGAAGGGACTCCGAACAGG 60.037 60.000 0.00 0.00 38.49 4.00
2453 2572 0.969894 AGTGAAGGGACTCCGAACAG 59.030 55.000 0.00 0.00 38.49 3.16
2454 2573 0.966920 GAGTGAAGGGACTCCGAACA 59.033 55.000 0.00 0.00 38.49 3.18
2455 2574 3.816580 GAGTGAAGGGACTCCGAAC 57.183 57.895 0.00 0.00 38.49 3.95
2460 2579 0.244178 GTCGTGGAGTGAAGGGACTC 59.756 60.000 0.00 0.00 38.49 3.36
2462 2581 0.244178 GAGTCGTGGAGTGAAGGGAC 59.756 60.000 0.00 0.00 0.00 4.46
2463 2582 0.898789 GGAGTCGTGGAGTGAAGGGA 60.899 60.000 0.00 0.00 0.00 4.20
2464 2583 1.592223 GGAGTCGTGGAGTGAAGGG 59.408 63.158 0.00 0.00 0.00 3.95
2465 2584 1.213013 CGGAGTCGTGGAGTGAAGG 59.787 63.158 0.00 0.00 0.00 3.46
2466 2585 1.444553 GCGGAGTCGTGGAGTGAAG 60.445 63.158 0.00 0.00 38.89 3.02
2467 2586 1.863662 GAGCGGAGTCGTGGAGTGAA 61.864 60.000 0.00 0.00 38.89 3.18
2468 2587 2.282251 AGCGGAGTCGTGGAGTGA 60.282 61.111 0.00 0.00 38.89 3.41
2469 2588 2.179517 GAGCGGAGTCGTGGAGTG 59.820 66.667 0.00 0.00 38.89 3.51
2470 2589 3.063084 GGAGCGGAGTCGTGGAGT 61.063 66.667 0.00 0.00 38.89 3.85
2471 2590 3.827898 GGGAGCGGAGTCGTGGAG 61.828 72.222 0.00 0.00 38.89 3.86
2501 2620 1.866496 CGCGATTTTCAGCTGCAGC 60.866 57.895 31.53 31.53 42.49 5.25
2502 2621 1.226211 CCGCGATTTTCAGCTGCAG 60.226 57.895 8.23 10.11 0.00 4.41
2503 2622 1.638388 CTCCGCGATTTTCAGCTGCA 61.638 55.000 8.23 0.00 0.00 4.41
2504 2623 1.061570 CTCCGCGATTTTCAGCTGC 59.938 57.895 8.23 0.00 0.00 5.25
2505 2624 1.061570 GCTCCGCGATTTTCAGCTG 59.938 57.895 8.23 7.63 0.00 4.24
2506 2625 3.490890 GCTCCGCGATTTTCAGCT 58.509 55.556 8.23 0.00 0.00 4.24
2517 2636 1.080025 ACCTGTTTACTCGCTCCGC 60.080 57.895 0.00 0.00 0.00 5.54
2518 2637 1.352156 GCACCTGTTTACTCGCTCCG 61.352 60.000 0.00 0.00 0.00 4.63
2519 2638 0.037232 AGCACCTGTTTACTCGCTCC 60.037 55.000 0.00 0.00 0.00 4.70
2520 2639 1.351153 GAGCACCTGTTTACTCGCTC 58.649 55.000 0.00 0.00 39.10 5.03
2521 2640 0.037232 GGAGCACCTGTTTACTCGCT 60.037 55.000 0.00 0.00 0.00 4.93
2522 2641 1.352156 CGGAGCACCTGTTTACTCGC 61.352 60.000 0.00 0.00 0.00 5.03
2523 2642 2.738147 CGGAGCACCTGTTTACTCG 58.262 57.895 0.00 0.00 0.00 4.18
2536 2655 2.049627 AATCCCAGGATCTGCGGAGC 62.050 60.000 0.98 0.98 44.72 4.70
2537 2656 0.471617 AAATCCCAGGATCTGCGGAG 59.528 55.000 0.00 0.00 35.48 4.63
2538 2657 0.469917 GAAATCCCAGGATCTGCGGA 59.530 55.000 0.00 0.00 36.08 5.54
2539 2658 0.882042 CGAAATCCCAGGATCTGCGG 60.882 60.000 0.00 0.00 33.08 5.69
2540 2659 0.179073 ACGAAATCCCAGGATCTGCG 60.179 55.000 0.00 6.90 33.08 5.18
2541 2660 1.303309 CACGAAATCCCAGGATCTGC 58.697 55.000 0.00 0.00 33.08 4.26
2542 2661 1.486310 TCCACGAAATCCCAGGATCTG 59.514 52.381 0.00 0.00 33.08 2.90
2543 2662 1.765314 CTCCACGAAATCCCAGGATCT 59.235 52.381 0.00 0.00 33.08 2.75
2544 2663 1.811941 GCTCCACGAAATCCCAGGATC 60.812 57.143 0.00 0.00 33.08 3.36
2545 2664 0.181350 GCTCCACGAAATCCCAGGAT 59.819 55.000 0.00 0.00 36.23 3.24
2546 2665 0.909610 AGCTCCACGAAATCCCAGGA 60.910 55.000 0.00 0.00 0.00 3.86
2547 2666 0.745845 CAGCTCCACGAAATCCCAGG 60.746 60.000 0.00 0.00 0.00 4.45
2548 2667 0.745845 CCAGCTCCACGAAATCCCAG 60.746 60.000 0.00 0.00 0.00 4.45
2549 2668 1.299648 CCAGCTCCACGAAATCCCA 59.700 57.895 0.00 0.00 0.00 4.37
2550 2669 1.026718 CACCAGCTCCACGAAATCCC 61.027 60.000 0.00 0.00 0.00 3.85
2551 2670 1.026718 CCACCAGCTCCACGAAATCC 61.027 60.000 0.00 0.00 0.00 3.01
2552 2671 0.036388 TCCACCAGCTCCACGAAATC 60.036 55.000 0.00 0.00 0.00 2.17
2553 2672 0.620556 ATCCACCAGCTCCACGAAAT 59.379 50.000 0.00 0.00 0.00 2.17
2554 2673 0.400213 AATCCACCAGCTCCACGAAA 59.600 50.000 0.00 0.00 0.00 3.46
2555 2674 0.321564 CAATCCACCAGCTCCACGAA 60.322 55.000 0.00 0.00 0.00 3.85
2556 2675 1.296392 CAATCCACCAGCTCCACGA 59.704 57.895 0.00 0.00 0.00 4.35
2557 2676 2.401766 GCAATCCACCAGCTCCACG 61.402 63.158 0.00 0.00 0.00 4.94
2558 2677 2.048603 GGCAATCCACCAGCTCCAC 61.049 63.158 0.00 0.00 0.00 4.02
2559 2678 2.356278 GGCAATCCACCAGCTCCA 59.644 61.111 0.00 0.00 0.00 3.86
2560 2679 2.819984 TTCGGCAATCCACCAGCTCC 62.820 60.000 0.00 0.00 0.00 4.70
2561 2680 1.377202 TTCGGCAATCCACCAGCTC 60.377 57.895 0.00 0.00 0.00 4.09
2562 2681 1.675641 GTTCGGCAATCCACCAGCT 60.676 57.895 0.00 0.00 0.00 4.24
2563 2682 1.926511 CTGTTCGGCAATCCACCAGC 61.927 60.000 0.00 0.00 0.00 4.85
2564 2683 1.926511 GCTGTTCGGCAATCCACCAG 61.927 60.000 0.00 0.00 0.00 4.00
2565 2684 1.971167 GCTGTTCGGCAATCCACCA 60.971 57.895 0.00 0.00 0.00 4.17
2566 2685 1.648467 GAGCTGTTCGGCAATCCACC 61.648 60.000 0.00 0.00 34.17 4.61
2567 2686 1.648467 GGAGCTGTTCGGCAATCCAC 61.648 60.000 0.00 0.00 34.71 4.02
2568 2687 1.377202 GGAGCTGTTCGGCAATCCA 60.377 57.895 0.00 0.00 34.71 3.41
2569 2688 2.464459 CGGAGCTGTTCGGCAATCC 61.464 63.158 0.00 4.45 32.50 3.01
2570 2689 1.019278 TTCGGAGCTGTTCGGCAATC 61.019 55.000 0.00 0.00 34.17 2.67
2571 2690 0.605319 TTTCGGAGCTGTTCGGCAAT 60.605 50.000 0.00 0.00 34.17 3.56
2572 2691 0.605319 ATTTCGGAGCTGTTCGGCAA 60.605 50.000 0.00 0.00 34.17 4.52
2573 2692 0.248012 TATTTCGGAGCTGTTCGGCA 59.752 50.000 0.00 0.00 34.17 5.69
2574 2693 1.527311 GATATTTCGGAGCTGTTCGGC 59.473 52.381 0.00 0.00 0.00 5.54
2575 2694 2.540101 GTGATATTTCGGAGCTGTTCGG 59.460 50.000 0.00 0.00 0.00 4.30
2576 2695 2.540101 GGTGATATTTCGGAGCTGTTCG 59.460 50.000 0.00 0.00 0.00 3.95
2577 2696 3.531538 TGGTGATATTTCGGAGCTGTTC 58.468 45.455 0.00 0.00 0.00 3.18
2578 2697 3.627395 TGGTGATATTTCGGAGCTGTT 57.373 42.857 0.00 0.00 0.00 3.16
2579 2698 3.845781 ATGGTGATATTTCGGAGCTGT 57.154 42.857 0.00 0.00 0.00 4.40
2580 2699 4.576053 TGAAATGGTGATATTTCGGAGCTG 59.424 41.667 0.00 0.00 45.56 4.24
2581 2700 4.576463 GTGAAATGGTGATATTTCGGAGCT 59.424 41.667 0.00 0.00 45.56 4.09
2582 2701 4.261197 GGTGAAATGGTGATATTTCGGAGC 60.261 45.833 0.00 0.00 45.56 4.70
2583 2702 4.881273 TGGTGAAATGGTGATATTTCGGAG 59.119 41.667 0.00 0.00 45.56 4.63
2584 2703 4.638421 GTGGTGAAATGGTGATATTTCGGA 59.362 41.667 0.00 0.00 45.56 4.55
2585 2704 4.397730 TGTGGTGAAATGGTGATATTTCGG 59.602 41.667 0.00 0.00 45.56 4.30
2586 2705 5.331902 GTGTGGTGAAATGGTGATATTTCG 58.668 41.667 0.00 0.00 45.56 3.46
2587 2706 5.418840 AGGTGTGGTGAAATGGTGATATTTC 59.581 40.000 0.00 0.00 43.84 2.17
2588 2707 5.332743 AGGTGTGGTGAAATGGTGATATTT 58.667 37.500 0.00 0.00 33.19 1.40
2589 2708 4.934356 AGGTGTGGTGAAATGGTGATATT 58.066 39.130 0.00 0.00 0.00 1.28
2590 2709 4.591321 AGGTGTGGTGAAATGGTGATAT 57.409 40.909 0.00 0.00 0.00 1.63
2591 2710 4.534500 AGTAGGTGTGGTGAAATGGTGATA 59.466 41.667 0.00 0.00 0.00 2.15
2592 2711 2.978156 AGGTGTGGTGAAATGGTGAT 57.022 45.000 0.00 0.00 0.00 3.06
2593 2712 2.708861 AGTAGGTGTGGTGAAATGGTGA 59.291 45.455 0.00 0.00 0.00 4.02
2594 2713 3.140325 AGTAGGTGTGGTGAAATGGTG 57.860 47.619 0.00 0.00 0.00 4.17
2595 2714 3.117663 ACAAGTAGGTGTGGTGAAATGGT 60.118 43.478 0.00 0.00 0.00 3.55
2596 2715 3.253188 CACAAGTAGGTGTGGTGAAATGG 59.747 47.826 0.00 0.00 44.29 3.16
2597 2716 4.488126 CACAAGTAGGTGTGGTGAAATG 57.512 45.455 0.00 0.00 44.29 2.32
2625 2744 1.411977 TGTCACAATTTGCCACAAGGG 59.588 47.619 0.00 0.00 40.85 3.95
2626 2745 2.886862 TGTCACAATTTGCCACAAGG 57.113 45.000 0.00 0.00 38.23 3.61
2627 2746 2.540931 GCTTGTCACAATTTGCCACAAG 59.459 45.455 24.02 24.02 40.52 3.16
2628 2747 2.168106 AGCTTGTCACAATTTGCCACAA 59.832 40.909 11.32 11.32 0.00 3.33
2629 2748 1.755959 AGCTTGTCACAATTTGCCACA 59.244 42.857 0.00 0.00 0.00 4.17
2630 2749 2.514205 AGCTTGTCACAATTTGCCAC 57.486 45.000 0.00 0.00 0.00 5.01
2638 2757 8.020819 GCAATATAAAGTGTTAGCTTGTCACAA 58.979 33.333 14.66 0.00 34.94 3.33
2643 2762 9.226606 TGTTAGCAATATAAAGTGTTAGCTTGT 57.773 29.630 0.00 0.00 32.70 3.16
2657 2776 7.087639 GTGGCAAACAGTTTGTTAGCAATATA 58.912 34.615 23.96 0.60 40.14 0.86
2660 2779 4.119136 GTGGCAAACAGTTTGTTAGCAAT 58.881 39.130 23.96 0.00 40.14 3.56
2700 2819 3.153919 TGTCCTAGACCCAATGTTTTGC 58.846 45.455 0.00 0.00 0.00 3.68
2717 2836 2.517650 GCTATGTAGAGCACCTGTCC 57.482 55.000 0.00 0.00 42.36 4.02
2726 2845 6.925610 TGCCATAGTTTTTGCTATGTAGAG 57.074 37.500 10.85 0.00 44.02 2.43
2727 2846 7.012327 GTCATGCCATAGTTTTTGCTATGTAGA 59.988 37.037 10.85 2.86 44.02 2.59
2751 2871 4.021544 TGGCCATTCCAATACAGTTTTGTC 60.022 41.667 0.00 0.00 43.21 3.18
2791 2911 4.180057 ACTGCTTTGTCAATTTGCGAAAA 58.820 34.783 0.00 0.00 0.00 2.29
2795 2915 3.004024 AGACTGCTTTGTCAATTTGCG 57.996 42.857 7.56 0.00 39.27 4.85
2817 2937 9.777297 AAGAATAACTAATTTTGTGGCATTTGT 57.223 25.926 0.00 0.00 0.00 2.83
2844 2964 9.331282 GTTCATAGGTCTTTAACTATGCAATCT 57.669 33.333 5.71 0.00 43.83 2.40
2893 3014 6.888088 GGGGAACATATACTTTTGTTACAGGT 59.112 38.462 2.41 0.00 38.23 4.00
2906 3027 7.496346 TTCAGGATATCAGGGGAACATATAC 57.504 40.000 4.83 0.00 0.00 1.47
2907 3028 8.700145 AATTCAGGATATCAGGGGAACATATA 57.300 34.615 4.83 0.00 0.00 0.86
2910 3031 5.937492 AATTCAGGATATCAGGGGAACAT 57.063 39.130 4.83 0.00 0.00 2.71
2912 3033 5.893824 ACAAAATTCAGGATATCAGGGGAAC 59.106 40.000 4.83 0.00 0.00 3.62
2956 3077 3.431415 AGGATTTTTGGGGTACAAGAGC 58.569 45.455 0.00 0.00 40.82 4.09
2959 3080 5.949354 TGTCATAGGATTTTTGGGGTACAAG 59.051 40.000 0.00 0.00 40.82 3.16
2963 3084 6.071051 GCTTTTGTCATAGGATTTTTGGGGTA 60.071 38.462 0.00 0.00 0.00 3.69
2990 3111 0.327924 TCTGACCCATCGGCAACATT 59.672 50.000 0.00 0.00 0.00 2.71
2999 3120 3.744660 ACACTTGTTTCTCTGACCCATC 58.255 45.455 0.00 0.00 0.00 3.51
3004 3125 6.260050 TGGACAATTACACTTGTTTCTCTGAC 59.740 38.462 0.00 0.00 39.40 3.51
3027 3148 5.419542 TCGATGAGTTATCCAAACTTCTGG 58.580 41.667 0.00 0.00 37.87 3.86
3033 3154 6.481954 AGTTGTTCGATGAGTTATCCAAAC 57.518 37.500 0.00 2.53 32.56 2.93
3049 3170 9.570488 AAGTTCTGTTATATCGACTAGTTGTTC 57.430 33.333 10.00 0.00 0.00 3.18
3065 3186 7.776030 TCCCTTGTTTTATGTGAAGTTCTGTTA 59.224 33.333 4.17 0.00 0.00 2.41
3070 3191 8.793592 ACTAATCCCTTGTTTTATGTGAAGTTC 58.206 33.333 0.00 0.00 0.00 3.01
3094 3224 7.507616 TCTTGGGTTTATTTGGTATCAAACACT 59.492 33.333 2.56 0.00 44.53 3.55
3108 3238 7.010160 TCATCTTGGAAGTTCTTGGGTTTATT 58.990 34.615 2.25 0.00 0.00 1.40
3173 3303 5.902613 TTAGCTTTCATTTCACATCCAGG 57.097 39.130 0.00 0.00 0.00 4.45
3216 3346 9.533253 CTTCAAGTGAGGTTTGAATACAATTTT 57.467 29.630 1.40 0.00 41.98 1.82
3220 3350 6.826231 TGACTTCAAGTGAGGTTTGAATACAA 59.174 34.615 0.00 0.00 41.98 2.41
3222 3352 6.483640 ACTGACTTCAAGTGAGGTTTGAATAC 59.516 38.462 9.01 0.99 41.98 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.