Multiple sequence alignment - TraesCS3B01G128800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G128800 chr3B 100.000 2549 0 0 1 2549 108092880 108090332 0.000000e+00 4708
1 TraesCS3B01G128800 chr3B 95.385 260 11 1 1 259 629712261 629712002 1.820000e-111 412
2 TraesCS3B01G128800 chr3B 89.355 310 30 3 256 564 531050910 531050603 1.110000e-103 387
3 TraesCS3B01G128800 chr1B 96.024 1987 75 3 566 2549 581717564 581715579 0.000000e+00 3229
4 TraesCS3B01G128800 chr1B 95.610 1982 80 6 569 2549 520844119 520842144 0.000000e+00 3171
5 TraesCS3B01G128800 chr1B 95.516 1985 82 6 567 2549 585423181 585425160 0.000000e+00 3166
6 TraesCS3B01G128800 chr1B 96.000 250 10 0 1 250 398793120 398792871 8.490000e-110 407
7 TraesCS3B01G128800 chr2B 95.884 1992 75 7 559 2549 692955889 692957874 0.000000e+00 3217
8 TraesCS3B01G128800 chr2B 95.668 1985 80 5 566 2549 458657420 458659399 0.000000e+00 3184
9 TraesCS3B01G128800 chr2B 95.652 253 11 0 1 253 743796852 743797104 8.490000e-110 407
10 TraesCS3B01G128800 chr2B 87.619 315 36 3 253 566 639307122 639306810 1.860000e-96 363
11 TraesCS3B01G128800 chr7B 96.168 1957 73 2 593 2549 708943230 708941276 0.000000e+00 3197
12 TraesCS3B01G128800 chr7B 95.661 1982 82 2 568 2549 12494680 12492703 0.000000e+00 3181
13 TraesCS3B01G128800 chr7B 95.489 1995 83 7 558 2549 720989201 720987211 0.000000e+00 3179
14 TraesCS3B01G128800 chr7B 95.635 252 11 0 1 252 69434233 69433982 3.050000e-109 405
15 TraesCS3B01G128800 chr7B 95.635 252 11 0 1 252 411186046 411185795 3.050000e-109 405
16 TraesCS3B01G128800 chr4A 95.812 1982 78 5 569 2549 705529252 705527275 0.000000e+00 3195
17 TraesCS3B01G128800 chr4B 90.852 317 26 3 253 568 424741275 424740961 3.030000e-114 422
18 TraesCS3B01G128800 chr4B 96.429 252 9 0 1 252 465933855 465933604 1.410000e-112 416
19 TraesCS3B01G128800 chr4B 95.276 254 12 0 1 254 31211843 31211590 1.100000e-108 403
20 TraesCS3B01G128800 chr4B 89.873 316 29 3 252 566 308108002 308108315 1.100000e-108 403
21 TraesCS3B01G128800 chr4B 88.889 315 30 4 253 566 234962399 234962089 1.430000e-102 383
22 TraesCS3B01G128800 chr5B 95.635 252 9 2 1 252 403394550 403394799 1.100000e-108 403
23 TraesCS3B01G128800 chr5B 94.615 260 13 1 1 260 374422758 374423016 3.950000e-108 401
24 TraesCS3B01G128800 chr2D 89.841 315 29 3 253 566 91595639 91595327 3.950000e-108 401
25 TraesCS3B01G128800 chr1A 88.959 317 29 6 253 566 75685158 75684845 1.110000e-103 387
26 TraesCS3B01G128800 chr3A 87.975 316 34 4 253 566 263237551 263237864 1.110000e-98 370
27 TraesCS3B01G128800 chr2A 87.658 316 34 5 254 566 363247011 363246698 1.860000e-96 363


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G128800 chr3B 108090332 108092880 2548 True 4708 4708 100.000 1 2549 1 chr3B.!!$R1 2548
1 TraesCS3B01G128800 chr1B 581715579 581717564 1985 True 3229 3229 96.024 566 2549 1 chr1B.!!$R3 1983
2 TraesCS3B01G128800 chr1B 520842144 520844119 1975 True 3171 3171 95.610 569 2549 1 chr1B.!!$R2 1980
3 TraesCS3B01G128800 chr1B 585423181 585425160 1979 False 3166 3166 95.516 567 2549 1 chr1B.!!$F1 1982
4 TraesCS3B01G128800 chr2B 692955889 692957874 1985 False 3217 3217 95.884 559 2549 1 chr2B.!!$F2 1990
5 TraesCS3B01G128800 chr2B 458657420 458659399 1979 False 3184 3184 95.668 566 2549 1 chr2B.!!$F1 1983
6 TraesCS3B01G128800 chr7B 708941276 708943230 1954 True 3197 3197 96.168 593 2549 1 chr7B.!!$R4 1956
7 TraesCS3B01G128800 chr7B 12492703 12494680 1977 True 3181 3181 95.661 568 2549 1 chr7B.!!$R1 1981
8 TraesCS3B01G128800 chr7B 720987211 720989201 1990 True 3179 3179 95.489 558 2549 1 chr7B.!!$R5 1991
9 TraesCS3B01G128800 chr4A 705527275 705529252 1977 True 3195 3195 95.812 569 2549 1 chr4A.!!$R1 1980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 291 0.032952 TTCACGAACTTGTCTCCCGG 59.967 55.0 0.0 0.0 0.00 5.73 F
305 306 0.036388 CCCGGCTCTACTCAAAGCAA 60.036 55.0 0.0 0.0 40.36 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1390 1393 1.473258 ACAGCTAGCTCTCTGTCAGG 58.527 55.000 16.15 2.53 39.11 3.86 R
2161 2174 2.027625 GCGGTCTTGGGTTCGAGTG 61.028 63.158 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.871175 TCTTTATCTAAACAACCCCTACTTTTT 57.129 29.630 0.00 0.00 0.00 1.94
35 36 9.990360 AAACAACCCCTACTTTTTATTTATGTG 57.010 29.630 0.00 0.00 0.00 3.21
36 37 8.715190 ACAACCCCTACTTTTTATTTATGTGT 57.285 30.769 0.00 0.00 0.00 3.72
37 38 9.150028 ACAACCCCTACTTTTTATTTATGTGTT 57.850 29.630 0.00 0.00 0.00 3.32
38 39 9.634163 CAACCCCTACTTTTTATTTATGTGTTC 57.366 33.333 0.00 0.00 0.00 3.18
39 40 9.596308 AACCCCTACTTTTTATTTATGTGTTCT 57.404 29.630 0.00 0.00 0.00 3.01
40 41 9.596308 ACCCCTACTTTTTATTTATGTGTTCTT 57.404 29.630 0.00 0.00 0.00 2.52
56 57 8.986477 ATGTGTTCTTTATTATCTTGCAAACC 57.014 30.769 0.00 0.00 0.00 3.27
57 58 8.177119 TGTGTTCTTTATTATCTTGCAAACCT 57.823 30.769 0.00 0.00 0.00 3.50
58 59 9.290988 TGTGTTCTTTATTATCTTGCAAACCTA 57.709 29.630 0.00 0.00 0.00 3.08
61 62 9.952188 GTTCTTTATTATCTTGCAAACCTATCC 57.048 33.333 0.00 0.00 0.00 2.59
62 63 9.693739 TTCTTTATTATCTTGCAAACCTATCCA 57.306 29.630 0.00 0.00 0.00 3.41
63 64 9.693739 TCTTTATTATCTTGCAAACCTATCCAA 57.306 29.630 0.00 0.00 0.00 3.53
64 65 9.736023 CTTTATTATCTTGCAAACCTATCCAAC 57.264 33.333 0.00 0.00 0.00 3.77
65 66 8.815565 TTATTATCTTGCAAACCTATCCAACA 57.184 30.769 0.00 0.00 0.00 3.33
66 67 7.716799 ATTATCTTGCAAACCTATCCAACAA 57.283 32.000 0.00 0.00 0.00 2.83
67 68 4.846779 TCTTGCAAACCTATCCAACAAC 57.153 40.909 0.00 0.00 0.00 3.32
68 69 4.211125 TCTTGCAAACCTATCCAACAACA 58.789 39.130 0.00 0.00 0.00 3.33
69 70 4.037446 TCTTGCAAACCTATCCAACAACAC 59.963 41.667 0.00 0.00 0.00 3.32
70 71 2.625790 TGCAAACCTATCCAACAACACC 59.374 45.455 0.00 0.00 0.00 4.16
71 72 2.890945 GCAAACCTATCCAACAACACCT 59.109 45.455 0.00 0.00 0.00 4.00
72 73 4.076394 GCAAACCTATCCAACAACACCTA 58.924 43.478 0.00 0.00 0.00 3.08
73 74 4.082949 GCAAACCTATCCAACAACACCTAC 60.083 45.833 0.00 0.00 0.00 3.18
74 75 4.986054 AACCTATCCAACAACACCTACA 57.014 40.909 0.00 0.00 0.00 2.74
75 76 4.986054 ACCTATCCAACAACACCTACAA 57.014 40.909 0.00 0.00 0.00 2.41
76 77 5.313280 ACCTATCCAACAACACCTACAAA 57.687 39.130 0.00 0.00 0.00 2.83
77 78 5.313712 ACCTATCCAACAACACCTACAAAG 58.686 41.667 0.00 0.00 0.00 2.77
78 79 5.163131 ACCTATCCAACAACACCTACAAAGT 60.163 40.000 0.00 0.00 0.00 2.66
79 80 6.043474 ACCTATCCAACAACACCTACAAAGTA 59.957 38.462 0.00 0.00 0.00 2.24
80 81 6.370718 CCTATCCAACAACACCTACAAAGTAC 59.629 42.308 0.00 0.00 0.00 2.73
81 82 5.362105 TCCAACAACACCTACAAAGTACT 57.638 39.130 0.00 0.00 0.00 2.73
82 83 5.747342 TCCAACAACACCTACAAAGTACTT 58.253 37.500 1.12 1.12 0.00 2.24
83 84 5.818857 TCCAACAACACCTACAAAGTACTTC 59.181 40.000 8.95 0.00 0.00 3.01
84 85 5.820947 CCAACAACACCTACAAAGTACTTCT 59.179 40.000 8.95 0.00 0.00 2.85
85 86 6.987992 CCAACAACACCTACAAAGTACTTCTA 59.012 38.462 8.95 0.94 0.00 2.10
86 87 7.170998 CCAACAACACCTACAAAGTACTTCTAG 59.829 40.741 8.95 10.33 0.00 2.43
87 88 7.357429 ACAACACCTACAAAGTACTTCTAGT 57.643 36.000 8.95 10.55 0.00 2.57
88 89 7.789026 ACAACACCTACAAAGTACTTCTAGTT 58.211 34.615 8.95 4.93 0.00 2.24
89 90 8.262933 ACAACACCTACAAAGTACTTCTAGTTT 58.737 33.333 8.95 2.14 0.00 2.66
90 91 8.762426 CAACACCTACAAAGTACTTCTAGTTTC 58.238 37.037 8.95 0.00 0.00 2.78
91 92 8.015185 ACACCTACAAAGTACTTCTAGTTTCA 57.985 34.615 8.95 0.00 0.00 2.69
92 93 8.648693 ACACCTACAAAGTACTTCTAGTTTCAT 58.351 33.333 8.95 0.00 0.00 2.57
105 106 9.091220 ACTTCTAGTTTCATACTTGTTCTAGGT 57.909 33.333 0.00 0.00 38.33 3.08
110 111 8.549338 AGTTTCATACTTGTTCTAGGTAAAGC 57.451 34.615 0.00 0.00 31.29 3.51
111 112 8.154856 AGTTTCATACTTGTTCTAGGTAAAGCA 58.845 33.333 0.00 0.00 31.29 3.91
112 113 8.780249 GTTTCATACTTGTTCTAGGTAAAGCAA 58.220 33.333 0.00 0.00 0.00 3.91
113 114 8.911918 TTCATACTTGTTCTAGGTAAAGCAAA 57.088 30.769 0.00 0.00 0.00 3.68
114 115 8.319143 TCATACTTGTTCTAGGTAAAGCAAAC 57.681 34.615 0.00 0.00 0.00 2.93
115 116 7.934665 TCATACTTGTTCTAGGTAAAGCAAACA 59.065 33.333 0.00 0.00 0.00 2.83
116 117 6.373186 ACTTGTTCTAGGTAAAGCAAACAC 57.627 37.500 0.00 0.00 0.00 3.32
117 118 6.120220 ACTTGTTCTAGGTAAAGCAAACACT 58.880 36.000 0.00 0.00 0.00 3.55
118 119 7.277396 ACTTGTTCTAGGTAAAGCAAACACTA 58.723 34.615 0.00 0.00 0.00 2.74
119 120 7.771826 ACTTGTTCTAGGTAAAGCAAACACTAA 59.228 33.333 0.00 0.00 0.00 2.24
120 121 7.724305 TGTTCTAGGTAAAGCAAACACTAAG 57.276 36.000 0.00 0.00 0.00 2.18
121 122 6.204108 TGTTCTAGGTAAAGCAAACACTAAGC 59.796 38.462 0.00 0.00 0.00 3.09
122 123 5.860611 TCTAGGTAAAGCAAACACTAAGCA 58.139 37.500 0.00 0.00 0.00 3.91
123 124 6.472887 TCTAGGTAAAGCAAACACTAAGCAT 58.527 36.000 0.00 0.00 0.00 3.79
124 125 5.376854 AGGTAAAGCAAACACTAAGCATG 57.623 39.130 0.00 0.00 0.00 4.06
125 126 3.920412 GGTAAAGCAAACACTAAGCATGC 59.080 43.478 10.51 10.51 37.28 4.06
126 127 2.336554 AAGCAAACACTAAGCATGCG 57.663 45.000 13.01 0.00 41.72 4.73
127 128 1.238439 AGCAAACACTAAGCATGCGT 58.762 45.000 13.01 12.35 41.72 5.24
128 129 2.422597 AGCAAACACTAAGCATGCGTA 58.577 42.857 13.01 12.92 41.72 4.42
129 130 2.416547 AGCAAACACTAAGCATGCGTAG 59.583 45.455 31.07 31.07 41.72 3.51
130 131 2.415168 GCAAACACTAAGCATGCGTAGA 59.585 45.455 36.76 11.33 33.38 2.59
131 132 3.484229 GCAAACACTAAGCATGCGTAGAG 60.484 47.826 36.76 31.83 33.38 2.43
132 133 3.594603 AACACTAAGCATGCGTAGAGT 57.405 42.857 36.76 32.39 34.69 3.24
133 134 3.152261 ACACTAAGCATGCGTAGAGTC 57.848 47.619 36.76 1.19 29.74 3.36
134 135 2.112522 CACTAAGCATGCGTAGAGTCG 58.887 52.381 36.76 21.72 33.38 4.18
135 136 1.743958 ACTAAGCATGCGTAGAGTCGT 59.256 47.619 36.76 18.87 33.38 4.34
136 137 2.941064 ACTAAGCATGCGTAGAGTCGTA 59.059 45.455 36.76 7.84 33.38 3.43
137 138 3.564644 ACTAAGCATGCGTAGAGTCGTAT 59.435 43.478 36.76 16.99 36.68 3.06
138 139 2.690173 AGCATGCGTAGAGTCGTATC 57.310 50.000 13.01 0.00 34.32 2.24
139 140 1.947456 AGCATGCGTAGAGTCGTATCA 59.053 47.619 13.01 0.00 34.32 2.15
140 141 2.031595 AGCATGCGTAGAGTCGTATCAG 60.032 50.000 13.01 0.00 34.32 2.90
141 142 2.287069 GCATGCGTAGAGTCGTATCAGT 60.287 50.000 0.00 0.00 34.32 3.41
142 143 3.292423 CATGCGTAGAGTCGTATCAGTG 58.708 50.000 0.00 0.00 34.32 3.66
143 144 1.669265 TGCGTAGAGTCGTATCAGTGG 59.331 52.381 0.00 0.00 0.00 4.00
144 145 1.938577 GCGTAGAGTCGTATCAGTGGA 59.061 52.381 0.00 0.00 0.00 4.02
145 146 2.353889 GCGTAGAGTCGTATCAGTGGAA 59.646 50.000 0.00 0.00 0.00 3.53
146 147 3.546417 GCGTAGAGTCGTATCAGTGGAAG 60.546 52.174 0.00 0.00 0.00 3.46
147 148 3.869832 CGTAGAGTCGTATCAGTGGAAGA 59.130 47.826 0.00 0.00 0.00 2.87
148 149 4.512198 CGTAGAGTCGTATCAGTGGAAGAT 59.488 45.833 0.00 0.00 0.00 2.40
149 150 5.695363 CGTAGAGTCGTATCAGTGGAAGATA 59.305 44.000 0.00 0.00 0.00 1.98
150 151 6.128769 CGTAGAGTCGTATCAGTGGAAGATAG 60.129 46.154 0.00 0.00 0.00 2.08
151 152 5.067273 AGAGTCGTATCAGTGGAAGATAGG 58.933 45.833 0.00 0.00 35.98 2.57
152 153 4.145807 AGTCGTATCAGTGGAAGATAGGG 58.854 47.826 0.00 0.00 35.59 3.53
153 154 2.891580 TCGTATCAGTGGAAGATAGGGC 59.108 50.000 0.00 0.00 35.59 5.19
154 155 2.894126 CGTATCAGTGGAAGATAGGGCT 59.106 50.000 0.00 0.00 32.84 5.19
155 156 3.322254 CGTATCAGTGGAAGATAGGGCTT 59.678 47.826 0.00 0.00 32.84 4.35
156 157 3.853355 ATCAGTGGAAGATAGGGCTTG 57.147 47.619 0.00 0.00 0.00 4.01
157 158 2.832838 TCAGTGGAAGATAGGGCTTGA 58.167 47.619 0.00 0.00 0.00 3.02
158 159 2.768527 TCAGTGGAAGATAGGGCTTGAG 59.231 50.000 0.00 0.00 0.00 3.02
159 160 2.768527 CAGTGGAAGATAGGGCTTGAGA 59.231 50.000 0.00 0.00 0.00 3.27
160 161 3.037549 AGTGGAAGATAGGGCTTGAGAG 58.962 50.000 0.00 0.00 0.00 3.20
161 162 2.103941 GTGGAAGATAGGGCTTGAGAGG 59.896 54.545 0.00 0.00 0.00 3.69
162 163 2.023015 TGGAAGATAGGGCTTGAGAGGA 60.023 50.000 0.00 0.00 0.00 3.71
163 164 3.247162 GGAAGATAGGGCTTGAGAGGAT 58.753 50.000 0.00 0.00 0.00 3.24
164 165 4.140686 TGGAAGATAGGGCTTGAGAGGATA 60.141 45.833 0.00 0.00 0.00 2.59
165 166 5.029474 GGAAGATAGGGCTTGAGAGGATAT 58.971 45.833 0.00 0.00 0.00 1.63
166 167 5.487131 GGAAGATAGGGCTTGAGAGGATATT 59.513 44.000 0.00 0.00 0.00 1.28
167 168 6.012945 GGAAGATAGGGCTTGAGAGGATATTT 60.013 42.308 0.00 0.00 0.00 1.40
168 169 6.371595 AGATAGGGCTTGAGAGGATATTTG 57.628 41.667 0.00 0.00 0.00 2.32
169 170 5.848921 AGATAGGGCTTGAGAGGATATTTGT 59.151 40.000 0.00 0.00 0.00 2.83
170 171 4.870021 AGGGCTTGAGAGGATATTTGTT 57.130 40.909 0.00 0.00 0.00 2.83
171 172 4.786425 AGGGCTTGAGAGGATATTTGTTC 58.214 43.478 0.00 0.00 0.00 3.18
172 173 4.476479 AGGGCTTGAGAGGATATTTGTTCT 59.524 41.667 0.00 0.00 0.00 3.01
173 174 5.667626 AGGGCTTGAGAGGATATTTGTTCTA 59.332 40.000 0.00 0.00 0.00 2.10
174 175 5.760743 GGGCTTGAGAGGATATTTGTTCTAC 59.239 44.000 0.00 0.00 0.00 2.59
175 176 5.760743 GGCTTGAGAGGATATTTGTTCTACC 59.239 44.000 0.00 0.00 0.00 3.18
176 177 6.408662 GGCTTGAGAGGATATTTGTTCTACCT 60.409 42.308 0.00 0.00 0.00 3.08
177 178 7.051000 GCTTGAGAGGATATTTGTTCTACCTT 58.949 38.462 0.00 0.00 0.00 3.50
178 179 7.554476 GCTTGAGAGGATATTTGTTCTACCTTT 59.446 37.037 0.00 0.00 0.00 3.11
181 182 8.204836 TGAGAGGATATTTGTTCTACCTTTAGC 58.795 37.037 0.00 0.00 0.00 3.09
182 183 8.325477 AGAGGATATTTGTTCTACCTTTAGCT 57.675 34.615 0.00 0.00 0.00 3.32
183 184 8.425703 AGAGGATATTTGTTCTACCTTTAGCTC 58.574 37.037 0.00 0.00 0.00 4.09
184 185 7.510407 AGGATATTTGTTCTACCTTTAGCTCC 58.490 38.462 0.00 0.00 0.00 4.70
185 186 7.348537 AGGATATTTGTTCTACCTTTAGCTCCT 59.651 37.037 0.00 0.00 0.00 3.69
186 187 7.658167 GGATATTTGTTCTACCTTTAGCTCCTC 59.342 40.741 0.00 0.00 0.00 3.71
187 188 4.451629 TTGTTCTACCTTTAGCTCCTCG 57.548 45.455 0.00 0.00 0.00 4.63
188 189 3.428532 TGTTCTACCTTTAGCTCCTCGT 58.571 45.455 0.00 0.00 0.00 4.18
189 190 3.830755 TGTTCTACCTTTAGCTCCTCGTT 59.169 43.478 0.00 0.00 0.00 3.85
190 191 4.174762 GTTCTACCTTTAGCTCCTCGTTG 58.825 47.826 0.00 0.00 0.00 4.10
191 192 2.758979 TCTACCTTTAGCTCCTCGTTGG 59.241 50.000 0.00 0.00 37.10 3.77
192 193 0.613777 ACCTTTAGCTCCTCGTTGGG 59.386 55.000 0.00 0.00 36.20 4.12
193 194 0.613777 CCTTTAGCTCCTCGTTGGGT 59.386 55.000 0.00 0.00 36.20 4.51
194 195 1.003233 CCTTTAGCTCCTCGTTGGGTT 59.997 52.381 0.00 0.00 36.20 4.11
195 196 2.076863 CTTTAGCTCCTCGTTGGGTTG 58.923 52.381 0.00 0.00 36.20 3.77
196 197 0.323629 TTAGCTCCTCGTTGGGTTGG 59.676 55.000 0.00 0.00 36.20 3.77
197 198 0.543410 TAGCTCCTCGTTGGGTTGGA 60.543 55.000 0.00 0.00 36.20 3.53
198 199 1.671379 GCTCCTCGTTGGGTTGGAC 60.671 63.158 0.00 0.00 36.20 4.02
199 200 1.752198 CTCCTCGTTGGGTTGGACA 59.248 57.895 0.00 0.00 36.20 4.02
200 201 0.602905 CTCCTCGTTGGGTTGGACAC 60.603 60.000 0.00 0.00 36.20 3.67
201 202 1.052124 TCCTCGTTGGGTTGGACACT 61.052 55.000 0.00 0.00 36.20 3.55
202 203 0.602905 CCTCGTTGGGTTGGACACTC 60.603 60.000 0.00 0.00 0.00 3.51
203 204 0.393077 CTCGTTGGGTTGGACACTCT 59.607 55.000 0.00 0.00 0.00 3.24
204 205 0.834612 TCGTTGGGTTGGACACTCTT 59.165 50.000 0.00 0.00 0.00 2.85
205 206 2.036733 CTCGTTGGGTTGGACACTCTTA 59.963 50.000 0.00 0.00 0.00 2.10
206 207 2.140717 CGTTGGGTTGGACACTCTTAC 58.859 52.381 0.00 0.00 0.00 2.34
207 208 2.224209 CGTTGGGTTGGACACTCTTACT 60.224 50.000 0.00 0.00 0.00 2.24
208 209 3.743269 CGTTGGGTTGGACACTCTTACTT 60.743 47.826 0.00 0.00 0.00 2.24
209 210 4.501915 CGTTGGGTTGGACACTCTTACTTA 60.502 45.833 0.00 0.00 0.00 2.24
210 211 5.557866 GTTGGGTTGGACACTCTTACTTAT 58.442 41.667 0.00 0.00 0.00 1.73
211 212 5.416271 TGGGTTGGACACTCTTACTTATC 57.584 43.478 0.00 0.00 0.00 1.75
212 213 4.081862 TGGGTTGGACACTCTTACTTATCG 60.082 45.833 0.00 0.00 0.00 2.92
213 214 4.159135 GGGTTGGACACTCTTACTTATCGA 59.841 45.833 0.00 0.00 0.00 3.59
214 215 5.337009 GGGTTGGACACTCTTACTTATCGAA 60.337 44.000 0.00 0.00 0.00 3.71
215 216 6.161381 GGTTGGACACTCTTACTTATCGAAA 58.839 40.000 0.00 0.00 0.00 3.46
216 217 6.310711 GGTTGGACACTCTTACTTATCGAAAG 59.689 42.308 0.00 0.00 0.00 2.62
219 220 6.657966 TGGACACTCTTACTTATCGAAAGAGA 59.342 38.462 23.89 11.96 45.94 3.10
220 221 6.968335 GGACACTCTTACTTATCGAAAGAGAC 59.032 42.308 23.89 15.77 45.94 3.36
221 222 7.148205 GGACACTCTTACTTATCGAAAGAGACT 60.148 40.741 23.89 11.92 45.94 3.24
222 223 8.789825 ACACTCTTACTTATCGAAAGAGACTA 57.210 34.615 23.89 0.00 45.94 2.59
223 224 8.667463 ACACTCTTACTTATCGAAAGAGACTAC 58.333 37.037 23.89 0.00 45.94 2.73
224 225 8.666573 CACTCTTACTTATCGAAAGAGACTACA 58.333 37.037 23.89 0.00 45.94 2.74
225 226 9.228949 ACTCTTACTTATCGAAAGAGACTACAA 57.771 33.333 23.89 4.41 45.94 2.41
234 235 6.849502 TCGAAAGAGACTACAAATATCACGT 58.150 36.000 0.00 0.00 34.84 4.49
235 236 7.977904 TCGAAAGAGACTACAAATATCACGTA 58.022 34.615 0.00 0.00 34.84 3.57
236 237 8.618677 TCGAAAGAGACTACAAATATCACGTAT 58.381 33.333 0.00 0.00 34.84 3.06
237 238 9.874215 CGAAAGAGACTACAAATATCACGTATA 57.126 33.333 0.00 0.00 0.00 1.47
242 243 8.798748 AGACTACAAATATCACGTATACTTGC 57.201 34.615 4.52 0.00 31.80 4.01
243 244 7.590322 AGACTACAAATATCACGTATACTTGCG 59.410 37.037 4.52 0.00 31.80 4.85
244 245 5.900339 ACAAATATCACGTATACTTGCGG 57.100 39.130 4.52 0.00 31.80 5.69
245 246 4.748102 ACAAATATCACGTATACTTGCGGG 59.252 41.667 4.52 0.00 31.80 6.13
246 247 4.595762 AATATCACGTATACTTGCGGGT 57.404 40.909 4.52 0.00 35.67 5.28
247 248 2.973694 ATCACGTATACTTGCGGGTT 57.026 45.000 4.52 0.00 35.67 4.11
248 249 5.710513 ATATCACGTATACTTGCGGGTTA 57.289 39.130 4.52 0.00 35.67 2.85
249 250 4.595762 ATCACGTATACTTGCGGGTTAT 57.404 40.909 4.52 0.00 35.67 1.89
250 251 3.968649 TCACGTATACTTGCGGGTTATC 58.031 45.455 4.52 0.00 35.67 1.75
251 252 3.380954 TCACGTATACTTGCGGGTTATCA 59.619 43.478 4.52 0.00 35.67 2.15
252 253 3.734231 CACGTATACTTGCGGGTTATCAG 59.266 47.826 0.56 0.00 35.03 2.90
253 254 3.382546 ACGTATACTTGCGGGTTATCAGT 59.617 43.478 0.56 0.00 35.03 3.41
254 255 4.580167 ACGTATACTTGCGGGTTATCAGTA 59.420 41.667 0.56 0.00 35.03 2.74
255 256 4.913924 CGTATACTTGCGGGTTATCAGTAC 59.086 45.833 0.56 0.00 0.00 2.73
256 257 5.278169 CGTATACTTGCGGGTTATCAGTACT 60.278 44.000 0.56 0.00 0.00 2.73
257 258 3.521947 ACTTGCGGGTTATCAGTACTC 57.478 47.619 0.00 0.00 0.00 2.59
258 259 2.829720 ACTTGCGGGTTATCAGTACTCA 59.170 45.455 0.00 0.00 0.00 3.41
259 260 3.259876 ACTTGCGGGTTATCAGTACTCAA 59.740 43.478 0.00 0.00 0.00 3.02
260 261 3.241067 TGCGGGTTATCAGTACTCAAC 57.759 47.619 0.00 0.00 0.00 3.18
261 262 2.563620 TGCGGGTTATCAGTACTCAACA 59.436 45.455 11.60 0.00 0.00 3.33
262 263 3.187700 GCGGGTTATCAGTACTCAACAG 58.812 50.000 11.60 7.42 0.00 3.16
263 264 3.187700 CGGGTTATCAGTACTCAACAGC 58.812 50.000 11.60 0.00 0.00 4.40
264 265 3.187700 GGGTTATCAGTACTCAACAGCG 58.812 50.000 11.60 0.00 0.00 5.18
265 266 3.368116 GGGTTATCAGTACTCAACAGCGT 60.368 47.826 11.60 0.00 0.00 5.07
266 267 3.858238 GGTTATCAGTACTCAACAGCGTC 59.142 47.826 11.60 0.00 0.00 5.19
267 268 2.656560 ATCAGTACTCAACAGCGTCC 57.343 50.000 0.00 0.00 0.00 4.79
268 269 1.617322 TCAGTACTCAACAGCGTCCT 58.383 50.000 0.00 0.00 0.00 3.85
269 270 1.540267 TCAGTACTCAACAGCGTCCTC 59.460 52.381 0.00 0.00 0.00 3.71
270 271 0.522180 AGTACTCAACAGCGTCCTCG 59.478 55.000 0.00 0.00 40.37 4.63
271 272 0.240411 GTACTCAACAGCGTCCTCGT 59.760 55.000 0.00 0.00 39.49 4.18
272 273 0.956633 TACTCAACAGCGTCCTCGTT 59.043 50.000 0.00 0.00 39.49 3.85
273 274 0.318784 ACTCAACAGCGTCCTCGTTC 60.319 55.000 0.00 0.00 39.49 3.95
274 275 0.318699 CTCAACAGCGTCCTCGTTCA 60.319 55.000 0.00 0.00 39.49 3.18
275 276 0.596600 TCAACAGCGTCCTCGTTCAC 60.597 55.000 0.00 0.00 39.49 3.18
276 277 1.660575 AACAGCGTCCTCGTTCACG 60.661 57.895 0.00 0.00 39.49 4.35
287 288 2.129823 TCGTTCACGAACTTGTCTCC 57.870 50.000 8.21 0.00 46.30 3.71
288 289 1.137513 CGTTCACGAACTTGTCTCCC 58.862 55.000 8.21 0.00 43.02 4.30
289 290 1.137513 GTTCACGAACTTGTCTCCCG 58.862 55.000 2.63 0.00 38.25 5.14
290 291 0.032952 TTCACGAACTTGTCTCCCGG 59.967 55.000 0.00 0.00 0.00 5.73
291 292 2.027625 CACGAACTTGTCTCCCGGC 61.028 63.158 0.00 0.00 0.00 6.13
292 293 2.207924 ACGAACTTGTCTCCCGGCT 61.208 57.895 0.00 0.00 0.00 5.52
293 294 1.446272 CGAACTTGTCTCCCGGCTC 60.446 63.158 0.00 0.00 0.00 4.70
294 295 1.878656 CGAACTTGTCTCCCGGCTCT 61.879 60.000 0.00 0.00 0.00 4.09
295 296 1.183549 GAACTTGTCTCCCGGCTCTA 58.816 55.000 0.00 0.00 0.00 2.43
296 297 0.896226 AACTTGTCTCCCGGCTCTAC 59.104 55.000 0.00 0.00 0.00 2.59
297 298 0.039911 ACTTGTCTCCCGGCTCTACT 59.960 55.000 0.00 0.00 0.00 2.57
298 299 0.741915 CTTGTCTCCCGGCTCTACTC 59.258 60.000 0.00 0.00 0.00 2.59
299 300 0.039180 TTGTCTCCCGGCTCTACTCA 59.961 55.000 0.00 0.00 0.00 3.41
300 301 0.039180 TGTCTCCCGGCTCTACTCAA 59.961 55.000 0.00 0.00 0.00 3.02
301 302 1.183549 GTCTCCCGGCTCTACTCAAA 58.816 55.000 0.00 0.00 0.00 2.69
302 303 1.135333 GTCTCCCGGCTCTACTCAAAG 59.865 57.143 0.00 0.00 0.00 2.77
303 304 0.179097 CTCCCGGCTCTACTCAAAGC 60.179 60.000 0.00 0.00 37.80 3.51
304 305 0.902984 TCCCGGCTCTACTCAAAGCA 60.903 55.000 0.00 0.00 40.36 3.91
305 306 0.036388 CCCGGCTCTACTCAAAGCAA 60.036 55.000 0.00 0.00 40.36 3.91
306 307 1.363744 CCGGCTCTACTCAAAGCAAG 58.636 55.000 0.00 0.00 40.36 4.01
307 308 1.066858 CCGGCTCTACTCAAAGCAAGA 60.067 52.381 0.00 0.00 40.36 3.02
308 309 2.612972 CCGGCTCTACTCAAAGCAAGAA 60.613 50.000 0.00 0.00 40.36 2.52
309 310 2.413453 CGGCTCTACTCAAAGCAAGAAC 59.587 50.000 0.00 0.00 40.36 3.01
310 311 3.403038 GGCTCTACTCAAAGCAAGAACA 58.597 45.455 0.00 0.00 40.36 3.18
311 312 3.187432 GGCTCTACTCAAAGCAAGAACAC 59.813 47.826 0.00 0.00 40.36 3.32
312 313 3.809832 GCTCTACTCAAAGCAAGAACACA 59.190 43.478 0.00 0.00 38.42 3.72
313 314 4.273480 GCTCTACTCAAAGCAAGAACACAA 59.727 41.667 0.00 0.00 38.42 3.33
314 315 5.734855 TCTACTCAAAGCAAGAACACAAC 57.265 39.130 0.00 0.00 0.00 3.32
315 316 5.182487 TCTACTCAAAGCAAGAACACAACA 58.818 37.500 0.00 0.00 0.00 3.33
316 317 4.782019 ACTCAAAGCAAGAACACAACAA 57.218 36.364 0.00 0.00 0.00 2.83
317 318 4.485163 ACTCAAAGCAAGAACACAACAAC 58.515 39.130 0.00 0.00 0.00 3.32
318 319 4.022416 ACTCAAAGCAAGAACACAACAACA 60.022 37.500 0.00 0.00 0.00 3.33
319 320 4.484236 TCAAAGCAAGAACACAACAACAG 58.516 39.130 0.00 0.00 0.00 3.16
320 321 4.217334 TCAAAGCAAGAACACAACAACAGA 59.783 37.500 0.00 0.00 0.00 3.41
321 322 4.782019 AAGCAAGAACACAACAACAGAA 57.218 36.364 0.00 0.00 0.00 3.02
322 323 4.989279 AGCAAGAACACAACAACAGAAT 57.011 36.364 0.00 0.00 0.00 2.40
323 324 6.449635 AAGCAAGAACACAACAACAGAATA 57.550 33.333 0.00 0.00 0.00 1.75
324 325 6.449635 AGCAAGAACACAACAACAGAATAA 57.550 33.333 0.00 0.00 0.00 1.40
325 326 6.265577 AGCAAGAACACAACAACAGAATAAC 58.734 36.000 0.00 0.00 0.00 1.89
326 327 6.033341 GCAAGAACACAACAACAGAATAACA 58.967 36.000 0.00 0.00 0.00 2.41
327 328 6.529829 GCAAGAACACAACAACAGAATAACAA 59.470 34.615 0.00 0.00 0.00 2.83
328 329 7.222611 GCAAGAACACAACAACAGAATAACAAT 59.777 33.333 0.00 0.00 0.00 2.71
329 330 8.745837 CAAGAACACAACAACAGAATAACAATC 58.254 33.333 0.00 0.00 0.00 2.67
330 331 7.995289 AGAACACAACAACAGAATAACAATCA 58.005 30.769 0.00 0.00 0.00 2.57
331 332 8.465999 AGAACACAACAACAGAATAACAATCAA 58.534 29.630 0.00 0.00 0.00 2.57
332 333 9.248291 GAACACAACAACAGAATAACAATCAAT 57.752 29.630 0.00 0.00 0.00 2.57
333 334 8.801715 ACACAACAACAGAATAACAATCAATC 57.198 30.769 0.00 0.00 0.00 2.67
334 335 8.412456 ACACAACAACAGAATAACAATCAATCA 58.588 29.630 0.00 0.00 0.00 2.57
335 336 9.414295 CACAACAACAGAATAACAATCAATCAT 57.586 29.630 0.00 0.00 0.00 2.45
336 337 9.414295 ACAACAACAGAATAACAATCAATCATG 57.586 29.630 0.00 0.00 0.00 3.07
337 338 8.865978 CAACAACAGAATAACAATCAATCATGG 58.134 33.333 0.00 0.00 0.00 3.66
338 339 8.125978 ACAACAGAATAACAATCAATCATGGT 57.874 30.769 0.00 0.00 0.00 3.55
339 340 8.030692 ACAACAGAATAACAATCAATCATGGTG 58.969 33.333 0.00 0.00 0.00 4.17
340 341 6.567050 ACAGAATAACAATCAATCATGGTGC 58.433 36.000 0.00 0.00 0.00 5.01
341 342 6.153170 ACAGAATAACAATCAATCATGGTGCA 59.847 34.615 0.00 0.00 0.00 4.57
342 343 7.036829 CAGAATAACAATCAATCATGGTGCAA 58.963 34.615 0.00 0.00 0.00 4.08
343 344 7.709182 CAGAATAACAATCAATCATGGTGCAAT 59.291 33.333 0.00 0.00 0.00 3.56
344 345 7.709182 AGAATAACAATCAATCATGGTGCAATG 59.291 33.333 0.00 0.00 0.00 2.82
345 346 3.527533 ACAATCAATCATGGTGCAATGC 58.472 40.909 0.00 0.00 0.00 3.56
346 347 2.502213 ATCAATCATGGTGCAATGCG 57.498 45.000 0.00 0.00 0.00 4.73
347 348 0.179132 TCAATCATGGTGCAATGCGC 60.179 50.000 10.74 10.74 42.89 6.09
370 371 3.029320 GCAACAGGATGCAAAACATGA 57.971 42.857 0.00 0.00 45.70 3.07
371 372 3.592059 GCAACAGGATGCAAAACATGAT 58.408 40.909 0.00 0.00 45.70 2.45
372 373 4.746729 GCAACAGGATGCAAAACATGATA 58.253 39.130 0.00 0.00 45.70 2.15
373 374 5.353938 GCAACAGGATGCAAAACATGATAT 58.646 37.500 0.00 0.00 45.70 1.63
374 375 5.461078 GCAACAGGATGCAAAACATGATATC 59.539 40.000 0.00 0.00 45.70 1.63
375 376 5.428496 ACAGGATGCAAAACATGATATCG 57.572 39.130 0.00 0.00 42.53 2.92
376 377 5.125356 ACAGGATGCAAAACATGATATCGA 58.875 37.500 0.00 0.00 42.53 3.59
377 378 5.589855 ACAGGATGCAAAACATGATATCGAA 59.410 36.000 0.00 0.00 42.53 3.71
378 379 6.263842 ACAGGATGCAAAACATGATATCGAAT 59.736 34.615 0.00 0.00 42.53 3.34
379 380 6.581166 CAGGATGCAAAACATGATATCGAATG 59.419 38.462 0.00 0.00 39.84 2.67
380 381 5.344128 GGATGCAAAACATGATATCGAATGC 59.656 40.000 0.00 3.94 39.84 3.56
381 382 5.246145 TGCAAAACATGATATCGAATGCA 57.754 34.783 0.00 11.76 38.78 3.96
382 383 5.834169 TGCAAAACATGATATCGAATGCAT 58.166 33.333 0.00 0.00 36.46 3.96
383 384 6.968250 TGCAAAACATGATATCGAATGCATA 58.032 32.000 0.00 0.00 36.46 3.14
384 385 7.079475 TGCAAAACATGATATCGAATGCATAG 58.921 34.615 0.00 0.00 36.46 2.23
385 386 7.080099 GCAAAACATGATATCGAATGCATAGT 58.920 34.615 0.00 0.00 0.00 2.12
386 387 8.229811 GCAAAACATGATATCGAATGCATAGTA 58.770 33.333 0.00 0.00 0.00 1.82
389 390 9.657419 AAACATGATATCGAATGCATAGTATGA 57.343 29.630 14.52 0.00 0.00 2.15
390 391 8.868635 ACATGATATCGAATGCATAGTATGAG 57.131 34.615 14.52 0.00 0.00 2.90
391 392 7.924947 ACATGATATCGAATGCATAGTATGAGG 59.075 37.037 14.52 0.00 0.00 3.86
392 393 7.410120 TGATATCGAATGCATAGTATGAGGT 57.590 36.000 14.52 0.00 0.00 3.85
393 394 7.260603 TGATATCGAATGCATAGTATGAGGTG 58.739 38.462 14.52 0.00 0.00 4.00
394 395 3.653344 TCGAATGCATAGTATGAGGTGC 58.347 45.455 14.52 0.00 38.05 5.01
400 401 3.316029 TGCATAGTATGAGGTGCAAATGC 59.684 43.478 14.52 0.00 43.83 3.56
412 413 2.144482 GCAAATGCATATGGGTGCTC 57.856 50.000 0.00 0.00 45.27 4.26
413 414 1.269936 GCAAATGCATATGGGTGCTCC 60.270 52.381 0.00 0.00 45.27 4.70
414 415 1.001048 CAAATGCATATGGGTGCTCCG 60.001 52.381 0.00 0.00 45.27 4.63
415 416 0.538057 AATGCATATGGGTGCTCCGG 60.538 55.000 0.00 0.00 45.27 5.14
416 417 1.418097 ATGCATATGGGTGCTCCGGA 61.418 55.000 2.93 2.93 45.27 5.14
417 418 1.148273 GCATATGGGTGCTCCGGAA 59.852 57.895 5.23 0.00 41.82 4.30
418 419 0.250901 GCATATGGGTGCTCCGGAAT 60.251 55.000 5.23 0.00 41.82 3.01
419 420 1.527034 CATATGGGTGCTCCGGAATG 58.473 55.000 5.23 0.00 38.76 2.67
420 421 0.401738 ATATGGGTGCTCCGGAATGG 59.598 55.000 5.23 0.00 38.76 3.16
432 433 4.513198 TCCGGAATGGAAAACAATGAAC 57.487 40.909 0.00 0.00 46.38 3.18
433 434 3.891977 TCCGGAATGGAAAACAATGAACA 59.108 39.130 0.00 0.00 46.38 3.18
434 435 4.526262 TCCGGAATGGAAAACAATGAACAT 59.474 37.500 0.00 0.00 46.38 2.71
435 436 4.626604 CCGGAATGGAAAACAATGAACATG 59.373 41.667 0.00 0.00 42.00 3.21
436 437 4.626604 CGGAATGGAAAACAATGAACATGG 59.373 41.667 0.00 0.00 0.00 3.66
437 438 4.392754 GGAATGGAAAACAATGAACATGGC 59.607 41.667 0.00 0.00 0.00 4.40
438 439 4.620589 ATGGAAAACAATGAACATGGCA 57.379 36.364 0.00 0.00 0.00 4.92
439 440 3.726607 TGGAAAACAATGAACATGGCAC 58.273 40.909 0.00 0.00 0.00 5.01
440 441 3.387374 TGGAAAACAATGAACATGGCACT 59.613 39.130 0.00 0.00 0.00 4.40
441 442 4.586421 TGGAAAACAATGAACATGGCACTA 59.414 37.500 0.00 0.00 0.00 2.74
442 443 5.245751 TGGAAAACAATGAACATGGCACTAT 59.754 36.000 0.00 0.00 0.00 2.12
443 444 6.435591 TGGAAAACAATGAACATGGCACTATA 59.564 34.615 0.00 0.00 0.00 1.31
444 445 7.123997 TGGAAAACAATGAACATGGCACTATAT 59.876 33.333 0.00 0.00 0.00 0.86
445 446 7.981225 GGAAAACAATGAACATGGCACTATATT 59.019 33.333 0.00 0.00 0.00 1.28
446 447 8.706492 AAAACAATGAACATGGCACTATATTG 57.294 30.769 0.00 0.50 0.00 1.90
447 448 6.395426 ACAATGAACATGGCACTATATTGG 57.605 37.500 13.93 0.00 0.00 3.16
448 449 5.893255 ACAATGAACATGGCACTATATTGGT 59.107 36.000 13.93 0.00 0.00 3.67
449 450 7.059788 ACAATGAACATGGCACTATATTGGTA 58.940 34.615 13.93 0.00 0.00 3.25
450 451 7.559533 ACAATGAACATGGCACTATATTGGTAA 59.440 33.333 13.93 0.00 0.00 2.85
451 452 8.579006 CAATGAACATGGCACTATATTGGTAAT 58.421 33.333 0.00 0.00 0.00 1.89
452 453 7.744087 TGAACATGGCACTATATTGGTAATC 57.256 36.000 0.00 0.00 0.00 1.75
453 454 6.714810 TGAACATGGCACTATATTGGTAATCC 59.285 38.462 0.00 0.00 0.00 3.01
454 455 6.199557 ACATGGCACTATATTGGTAATCCA 57.800 37.500 0.00 0.00 42.66 3.41
463 464 3.996361 TGGTAATCCAAGCATGCCA 57.004 47.368 15.66 0.00 41.25 4.92
464 465 1.473258 TGGTAATCCAAGCATGCCAC 58.527 50.000 15.66 1.14 41.25 5.01
465 466 1.005805 TGGTAATCCAAGCATGCCACT 59.994 47.619 15.66 0.00 41.25 4.00
466 467 1.406539 GGTAATCCAAGCATGCCACTG 59.593 52.381 15.66 9.55 0.00 3.66
467 468 1.406539 GTAATCCAAGCATGCCACTGG 59.593 52.381 20.07 20.07 0.00 4.00
468 469 0.040058 AATCCAAGCATGCCACTGGA 59.960 50.000 26.98 26.98 0.00 3.86
469 470 0.260816 ATCCAAGCATGCCACTGGAT 59.739 50.000 28.38 28.38 0.00 3.41
470 471 0.918258 TCCAAGCATGCCACTGGATA 59.082 50.000 23.21 8.45 0.00 2.59
471 472 1.284491 TCCAAGCATGCCACTGGATAA 59.716 47.619 23.21 7.87 0.00 1.75
472 473 2.101783 CCAAGCATGCCACTGGATAAA 58.898 47.619 21.07 0.00 0.00 1.40
473 474 2.696707 CCAAGCATGCCACTGGATAAAT 59.303 45.455 21.07 0.00 0.00 1.40
474 475 3.133362 CCAAGCATGCCACTGGATAAATT 59.867 43.478 21.07 0.42 0.00 1.82
475 476 4.116961 CAAGCATGCCACTGGATAAATTG 58.883 43.478 15.66 3.73 0.00 2.32
476 477 2.696707 AGCATGCCACTGGATAAATTGG 59.303 45.455 15.66 0.00 0.00 3.16
477 478 2.694628 GCATGCCACTGGATAAATTGGA 59.305 45.455 6.36 0.00 0.00 3.53
478 479 3.132646 GCATGCCACTGGATAAATTGGAA 59.867 43.478 6.36 0.00 0.00 3.53
479 480 4.738541 GCATGCCACTGGATAAATTGGAAG 60.739 45.833 6.36 0.00 0.00 3.46
480 481 4.314522 TGCCACTGGATAAATTGGAAGA 57.685 40.909 0.00 0.00 0.00 2.87
481 482 4.870636 TGCCACTGGATAAATTGGAAGAT 58.129 39.130 0.00 0.00 0.00 2.40
482 483 5.271598 TGCCACTGGATAAATTGGAAGATT 58.728 37.500 0.00 0.00 0.00 2.40
483 484 5.721000 TGCCACTGGATAAATTGGAAGATTT 59.279 36.000 0.00 0.00 33.95 2.17
484 485 6.127366 TGCCACTGGATAAATTGGAAGATTTC 60.127 38.462 0.00 0.00 31.96 2.17
485 486 6.498304 CCACTGGATAAATTGGAAGATTTCG 58.502 40.000 0.00 0.00 31.96 3.46
486 487 6.460123 CCACTGGATAAATTGGAAGATTTCGG 60.460 42.308 0.00 0.00 31.96 4.30
487 488 6.095440 CACTGGATAAATTGGAAGATTTCGGT 59.905 38.462 0.00 0.00 31.96 4.69
488 489 6.663523 ACTGGATAAATTGGAAGATTTCGGTT 59.336 34.615 0.00 0.00 31.96 4.44
489 490 6.862209 TGGATAAATTGGAAGATTTCGGTTG 58.138 36.000 0.00 0.00 31.96 3.77
490 491 6.661377 TGGATAAATTGGAAGATTTCGGTTGA 59.339 34.615 0.00 0.00 31.96 3.18
491 492 7.177568 TGGATAAATTGGAAGATTTCGGTTGAA 59.822 33.333 0.00 0.00 31.96 2.69
507 508 8.481974 TTCGGTTGAAATCGATATAAAGAACA 57.518 30.769 0.00 0.00 35.25 3.18
508 509 8.657074 TCGGTTGAAATCGATATAAAGAACAT 57.343 30.769 0.00 0.00 0.00 2.71
509 510 8.547894 TCGGTTGAAATCGATATAAAGAACATG 58.452 33.333 0.00 0.00 0.00 3.21
510 511 8.547894 CGGTTGAAATCGATATAAAGAACATGA 58.452 33.333 0.00 0.00 0.00 3.07
511 512 9.869844 GGTTGAAATCGATATAAAGAACATGAG 57.130 33.333 0.00 0.00 0.00 2.90
512 513 9.869844 GTTGAAATCGATATAAAGAACATGAGG 57.130 33.333 0.00 0.00 0.00 3.86
513 514 9.830975 TTGAAATCGATATAAAGAACATGAGGA 57.169 29.630 0.00 0.00 0.00 3.71
514 515 9.830975 TGAAATCGATATAAAGAACATGAGGAA 57.169 29.630 0.00 0.00 0.00 3.36
516 517 7.875316 ATCGATATAAAGAACATGAGGAACG 57.125 36.000 0.00 0.00 0.00 3.95
517 518 6.213677 TCGATATAAAGAACATGAGGAACGG 58.786 40.000 0.00 0.00 0.00 4.44
518 519 6.040054 TCGATATAAAGAACATGAGGAACGGA 59.960 38.462 0.00 0.00 0.00 4.69
519 520 6.868864 CGATATAAAGAACATGAGGAACGGAT 59.131 38.462 0.00 0.00 0.00 4.18
520 521 7.148738 CGATATAAAGAACATGAGGAACGGATG 60.149 40.741 0.00 0.00 0.00 3.51
521 522 2.029838 AGAACATGAGGAACGGATGC 57.970 50.000 0.00 0.00 0.00 3.91
522 523 1.278985 AGAACATGAGGAACGGATGCA 59.721 47.619 0.00 0.00 0.00 3.96
523 524 1.398390 GAACATGAGGAACGGATGCAC 59.602 52.381 0.00 0.00 0.00 4.57
524 525 0.324614 ACATGAGGAACGGATGCACA 59.675 50.000 0.00 0.00 0.00 4.57
525 526 0.729116 CATGAGGAACGGATGCACAC 59.271 55.000 0.00 0.00 0.00 3.82
526 527 0.324614 ATGAGGAACGGATGCACACA 59.675 50.000 0.00 0.00 0.00 3.72
527 528 0.107643 TGAGGAACGGATGCACACAA 59.892 50.000 0.00 0.00 0.00 3.33
528 529 0.517316 GAGGAACGGATGCACACAAC 59.483 55.000 0.00 0.00 0.00 3.32
529 530 0.108585 AGGAACGGATGCACACAACT 59.891 50.000 0.00 0.00 0.00 3.16
530 531 0.517316 GGAACGGATGCACACAACTC 59.483 55.000 0.00 0.00 0.00 3.01
531 532 1.225855 GAACGGATGCACACAACTCA 58.774 50.000 0.00 0.00 0.00 3.41
532 533 1.601903 GAACGGATGCACACAACTCAA 59.398 47.619 0.00 0.00 0.00 3.02
533 534 1.674359 ACGGATGCACACAACTCAAA 58.326 45.000 0.00 0.00 0.00 2.69
534 535 1.333619 ACGGATGCACACAACTCAAAC 59.666 47.619 0.00 0.00 0.00 2.93
535 536 1.334960 CGGATGCACACAACTCAAACC 60.335 52.381 0.00 0.00 0.00 3.27
536 537 1.334960 GGATGCACACAACTCAAACCG 60.335 52.381 0.00 0.00 0.00 4.44
537 538 1.333619 GATGCACACAACTCAAACCGT 59.666 47.619 0.00 0.00 0.00 4.83
538 539 0.449786 TGCACACAACTCAAACCGTG 59.550 50.000 0.00 0.00 35.48 4.94
539 540 0.730265 GCACACAACTCAAACCGTGA 59.270 50.000 0.00 0.00 33.56 4.35
549 550 3.791973 TCAAACCGTGAGCAAAACAAT 57.208 38.095 0.00 0.00 0.00 2.71
550 551 4.902443 TCAAACCGTGAGCAAAACAATA 57.098 36.364 0.00 0.00 0.00 1.90
551 552 5.250235 TCAAACCGTGAGCAAAACAATAA 57.750 34.783 0.00 0.00 0.00 1.40
552 553 5.038033 TCAAACCGTGAGCAAAACAATAAC 58.962 37.500 0.00 0.00 0.00 1.89
553 554 4.640789 AACCGTGAGCAAAACAATAACA 57.359 36.364 0.00 0.00 0.00 2.41
554 555 4.640789 ACCGTGAGCAAAACAATAACAA 57.359 36.364 0.00 0.00 0.00 2.83
555 556 5.195001 ACCGTGAGCAAAACAATAACAAT 57.805 34.783 0.00 0.00 0.00 2.71
556 557 4.981674 ACCGTGAGCAAAACAATAACAATG 59.018 37.500 0.00 0.00 0.00 2.82
557 558 4.143347 CCGTGAGCAAAACAATAACAATGC 60.143 41.667 0.00 0.00 0.00 3.56
558 559 4.443725 CGTGAGCAAAACAATAACAATGCA 59.556 37.500 0.00 0.00 36.30 3.96
559 560 5.051173 CGTGAGCAAAACAATAACAATGCAA 60.051 36.000 0.00 0.00 36.30 4.08
560 561 6.509199 CGTGAGCAAAACAATAACAATGCAAA 60.509 34.615 0.00 0.00 36.30 3.68
561 562 7.185453 GTGAGCAAAACAATAACAATGCAAAA 58.815 30.769 0.00 0.00 36.30 2.44
562 563 7.164008 GTGAGCAAAACAATAACAATGCAAAAC 59.836 33.333 0.00 0.00 36.30 2.43
563 564 7.065563 TGAGCAAAACAATAACAATGCAAAACT 59.934 29.630 0.00 0.00 36.30 2.66
564 565 7.188157 AGCAAAACAATAACAATGCAAAACTG 58.812 30.769 0.00 0.00 36.30 3.16
608 609 2.026822 CCTTAGTGGTGTCCATCTGCTT 60.027 50.000 0.00 0.00 35.28 3.91
683 684 2.471743 CCGACTCGTTCTGTGAACTTTC 59.528 50.000 8.51 2.28 0.00 2.62
689 690 1.591158 GTTCTGTGAACTTTCGCGTCA 59.409 47.619 5.77 0.00 40.46 4.35
726 727 1.255667 TGACTCGGCCCTTACAGGTC 61.256 60.000 0.00 0.00 31.93 3.85
760 761 2.427095 AGAGGCGGCCAATTTTATTCAC 59.573 45.455 23.09 0.00 0.00 3.18
934 937 1.268283 GGAAGCTAGCTGTGGAGGGT 61.268 60.000 20.16 0.00 0.00 4.34
953 956 2.982130 CGGCAGTGGGAAGCTAGT 59.018 61.111 0.00 0.00 0.00 2.57
1018 1021 0.392193 CATGTCTTCCGCAAGCTCCT 60.392 55.000 0.00 0.00 0.00 3.69
1035 1038 3.071837 TGCGCCACCTCACGGATA 61.072 61.111 4.18 0.00 0.00 2.59
1433 1436 6.305272 TGAGCTTAGGATGTTGAAGAAGAT 57.695 37.500 0.00 0.00 0.00 2.40
1630 1634 6.987386 TGGTCAAAGTTGTATAAATGTTGGG 58.013 36.000 0.00 0.00 0.00 4.12
1905 1910 7.489113 CACCTAGTGCCAAAATAAATGAACATC 59.511 37.037 0.00 0.00 0.00 3.06
2161 2174 2.730066 AAAAATTGGTGCGGCTGGGC 62.730 55.000 0.00 0.00 0.00 5.36
2214 2227 0.688487 TTAGGGTTGCGCTGGTAACT 59.312 50.000 9.73 1.93 38.61 2.24
2330 2344 1.087202 TTTGCACACGCGTGAGAGTT 61.087 50.000 42.94 19.98 46.80 3.01
2440 2454 4.814771 GCACTTGGTTTAGTGTTAGAGTGT 59.185 41.667 5.75 0.00 45.76 3.55
2464 2478 5.474189 TCACTTGGTTTAGGATTTAAACGGG 59.526 40.000 0.00 1.11 38.06 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.871175 AAAAAGTAGGGGTTGTTTAGATAAAGA 57.129 29.630 0.00 0.00 0.00 2.52
10 11 9.150028 ACACATAAATAAAAAGTAGGGGTTGTT 57.850 29.630 0.00 0.00 0.00 2.83
11 12 8.715190 ACACATAAATAAAAAGTAGGGGTTGT 57.285 30.769 0.00 0.00 0.00 3.32
12 13 9.634163 GAACACATAAATAAAAAGTAGGGGTTG 57.366 33.333 0.00 0.00 26.17 3.77
13 14 9.596308 AGAACACATAAATAAAAAGTAGGGGTT 57.404 29.630 0.00 0.00 28.49 4.11
14 15 9.596308 AAGAACACATAAATAAAAAGTAGGGGT 57.404 29.630 0.00 0.00 0.00 4.95
31 32 8.806146 AGGTTTGCAAGATAATAAAGAACACAT 58.194 29.630 0.00 0.00 0.00 3.21
32 33 8.177119 AGGTTTGCAAGATAATAAAGAACACA 57.823 30.769 0.00 0.00 0.00 3.72
35 36 9.952188 GGATAGGTTTGCAAGATAATAAAGAAC 57.048 33.333 0.00 0.00 0.00 3.01
36 37 9.693739 TGGATAGGTTTGCAAGATAATAAAGAA 57.306 29.630 0.00 0.00 0.00 2.52
37 38 9.693739 TTGGATAGGTTTGCAAGATAATAAAGA 57.306 29.630 0.00 0.00 0.00 2.52
38 39 9.736023 GTTGGATAGGTTTGCAAGATAATAAAG 57.264 33.333 0.00 0.00 0.00 1.85
39 40 9.249053 TGTTGGATAGGTTTGCAAGATAATAAA 57.751 29.630 0.00 0.00 0.00 1.40
40 41 8.815565 TGTTGGATAGGTTTGCAAGATAATAA 57.184 30.769 0.00 0.00 0.00 1.40
41 42 8.682710 GTTGTTGGATAGGTTTGCAAGATAATA 58.317 33.333 0.00 0.00 0.00 0.98
42 43 7.178274 TGTTGTTGGATAGGTTTGCAAGATAAT 59.822 33.333 0.00 0.00 0.00 1.28
43 44 6.491745 TGTTGTTGGATAGGTTTGCAAGATAA 59.508 34.615 0.00 0.00 0.00 1.75
44 45 6.007076 TGTTGTTGGATAGGTTTGCAAGATA 58.993 36.000 0.00 0.00 0.00 1.98
45 46 4.832266 TGTTGTTGGATAGGTTTGCAAGAT 59.168 37.500 0.00 0.00 0.00 2.40
46 47 4.037446 GTGTTGTTGGATAGGTTTGCAAGA 59.963 41.667 0.00 0.00 0.00 3.02
47 48 4.298332 GTGTTGTTGGATAGGTTTGCAAG 58.702 43.478 0.00 0.00 0.00 4.01
48 49 3.068873 GGTGTTGTTGGATAGGTTTGCAA 59.931 43.478 0.00 0.00 0.00 4.08
49 50 2.625790 GGTGTTGTTGGATAGGTTTGCA 59.374 45.455 0.00 0.00 0.00 4.08
50 51 2.890945 AGGTGTTGTTGGATAGGTTTGC 59.109 45.455 0.00 0.00 0.00 3.68
51 52 5.067273 TGTAGGTGTTGTTGGATAGGTTTG 58.933 41.667 0.00 0.00 0.00 2.93
52 53 5.313280 TGTAGGTGTTGTTGGATAGGTTT 57.687 39.130 0.00 0.00 0.00 3.27
53 54 4.986054 TGTAGGTGTTGTTGGATAGGTT 57.014 40.909 0.00 0.00 0.00 3.50
54 55 4.986054 TTGTAGGTGTTGTTGGATAGGT 57.014 40.909 0.00 0.00 0.00 3.08
55 56 5.313712 ACTTTGTAGGTGTTGTTGGATAGG 58.686 41.667 0.00 0.00 0.00 2.57
56 57 7.159372 AGTACTTTGTAGGTGTTGTTGGATAG 58.841 38.462 0.00 0.00 0.00 2.08
57 58 7.069877 AGTACTTTGTAGGTGTTGTTGGATA 57.930 36.000 0.00 0.00 0.00 2.59
58 59 5.937111 AGTACTTTGTAGGTGTTGTTGGAT 58.063 37.500 0.00 0.00 0.00 3.41
59 60 5.362105 AGTACTTTGTAGGTGTTGTTGGA 57.638 39.130 0.00 0.00 0.00 3.53
60 61 5.820947 AGAAGTACTTTGTAGGTGTTGTTGG 59.179 40.000 10.02 0.00 0.00 3.77
61 62 6.920569 AGAAGTACTTTGTAGGTGTTGTTG 57.079 37.500 10.02 0.00 0.00 3.33
62 63 7.789026 ACTAGAAGTACTTTGTAGGTGTTGTT 58.211 34.615 21.29 4.92 37.05 2.83
63 64 7.357429 ACTAGAAGTACTTTGTAGGTGTTGT 57.643 36.000 21.29 6.00 37.05 3.32
64 65 8.658499 AAACTAGAAGTACTTTGTAGGTGTTG 57.342 34.615 21.29 5.55 37.05 3.33
65 66 8.480501 TGAAACTAGAAGTACTTTGTAGGTGTT 58.519 33.333 21.29 15.01 37.05 3.32
66 67 8.015185 TGAAACTAGAAGTACTTTGTAGGTGT 57.985 34.615 21.29 11.44 37.05 4.16
79 80 9.091220 ACCTAGAACAAGTATGAAACTAGAAGT 57.909 33.333 0.00 0.00 37.50 3.01
84 85 9.649167 GCTTTACCTAGAACAAGTATGAAACTA 57.351 33.333 0.00 0.00 37.50 2.24
85 86 8.154856 TGCTTTACCTAGAACAAGTATGAAACT 58.845 33.333 0.00 0.00 41.49 2.66
86 87 8.319143 TGCTTTACCTAGAACAAGTATGAAAC 57.681 34.615 0.00 0.00 0.00 2.78
87 88 8.911918 TTGCTTTACCTAGAACAAGTATGAAA 57.088 30.769 0.00 0.00 0.00 2.69
88 89 8.780249 GTTTGCTTTACCTAGAACAAGTATGAA 58.220 33.333 0.00 0.00 0.00 2.57
89 90 7.934665 TGTTTGCTTTACCTAGAACAAGTATGA 59.065 33.333 0.00 0.00 0.00 2.15
90 91 8.015658 GTGTTTGCTTTACCTAGAACAAGTATG 58.984 37.037 0.00 0.00 0.00 2.39
91 92 7.937394 AGTGTTTGCTTTACCTAGAACAAGTAT 59.063 33.333 0.00 0.00 0.00 2.12
92 93 7.277396 AGTGTTTGCTTTACCTAGAACAAGTA 58.723 34.615 0.00 0.00 0.00 2.24
93 94 6.120220 AGTGTTTGCTTTACCTAGAACAAGT 58.880 36.000 0.00 0.00 0.00 3.16
94 95 6.619801 AGTGTTTGCTTTACCTAGAACAAG 57.380 37.500 0.00 0.00 0.00 3.16
95 96 7.255001 GCTTAGTGTTTGCTTTACCTAGAACAA 60.255 37.037 0.00 0.00 0.00 2.83
96 97 6.204108 GCTTAGTGTTTGCTTTACCTAGAACA 59.796 38.462 0.00 0.00 0.00 3.18
97 98 6.204108 TGCTTAGTGTTTGCTTTACCTAGAAC 59.796 38.462 0.00 0.00 0.00 3.01
98 99 6.292923 TGCTTAGTGTTTGCTTTACCTAGAA 58.707 36.000 0.00 0.00 0.00 2.10
99 100 5.860611 TGCTTAGTGTTTGCTTTACCTAGA 58.139 37.500 0.00 0.00 0.00 2.43
100 101 6.546395 CATGCTTAGTGTTTGCTTTACCTAG 58.454 40.000 0.00 0.00 0.00 3.02
101 102 5.106317 GCATGCTTAGTGTTTGCTTTACCTA 60.106 40.000 11.37 0.00 0.00 3.08
102 103 4.321230 GCATGCTTAGTGTTTGCTTTACCT 60.321 41.667 11.37 0.00 0.00 3.08
103 104 3.920412 GCATGCTTAGTGTTTGCTTTACC 59.080 43.478 11.37 0.00 0.00 2.85
104 105 3.603770 CGCATGCTTAGTGTTTGCTTTAC 59.396 43.478 17.13 0.00 0.00 2.01
105 106 3.252215 ACGCATGCTTAGTGTTTGCTTTA 59.748 39.130 17.13 0.00 0.00 1.85
106 107 2.034558 ACGCATGCTTAGTGTTTGCTTT 59.965 40.909 17.13 0.00 0.00 3.51
107 108 1.608590 ACGCATGCTTAGTGTTTGCTT 59.391 42.857 17.13 0.00 0.00 3.91
108 109 1.238439 ACGCATGCTTAGTGTTTGCT 58.762 45.000 17.13 0.00 0.00 3.91
109 110 2.415168 TCTACGCATGCTTAGTGTTTGC 59.585 45.455 25.37 0.00 0.00 3.68
110 111 3.679980 ACTCTACGCATGCTTAGTGTTTG 59.320 43.478 24.88 15.82 0.00 2.93
111 112 3.926616 ACTCTACGCATGCTTAGTGTTT 58.073 40.909 24.88 10.44 0.00 2.83
112 113 3.512680 GACTCTACGCATGCTTAGTGTT 58.487 45.455 28.63 17.95 29.10 3.32
113 114 2.478031 CGACTCTACGCATGCTTAGTGT 60.478 50.000 28.49 28.49 30.74 3.55
114 115 2.112522 CGACTCTACGCATGCTTAGTG 58.887 52.381 25.37 24.57 0.00 2.74
115 116 1.743958 ACGACTCTACGCATGCTTAGT 59.256 47.619 25.37 17.64 36.70 2.24
116 117 2.476873 ACGACTCTACGCATGCTTAG 57.523 50.000 21.90 21.90 36.70 2.18
117 118 3.562557 TGATACGACTCTACGCATGCTTA 59.437 43.478 17.13 10.15 36.70 3.09
118 119 2.357952 TGATACGACTCTACGCATGCTT 59.642 45.455 17.13 9.37 36.70 3.91
119 120 1.947456 TGATACGACTCTACGCATGCT 59.053 47.619 17.13 5.50 36.70 3.79
120 121 2.287069 ACTGATACGACTCTACGCATGC 60.287 50.000 7.91 7.91 36.70 4.06
121 122 3.292423 CACTGATACGACTCTACGCATG 58.708 50.000 0.00 0.00 36.70 4.06
122 123 2.290916 CCACTGATACGACTCTACGCAT 59.709 50.000 0.00 0.00 36.70 4.73
123 124 1.669265 CCACTGATACGACTCTACGCA 59.331 52.381 0.00 0.00 36.70 5.24
124 125 1.938577 TCCACTGATACGACTCTACGC 59.061 52.381 0.00 0.00 36.70 4.42
125 126 3.869832 TCTTCCACTGATACGACTCTACG 59.130 47.826 0.00 0.00 39.31 3.51
126 127 6.148150 CCTATCTTCCACTGATACGACTCTAC 59.852 46.154 0.00 0.00 0.00 2.59
127 128 6.231951 CCTATCTTCCACTGATACGACTCTA 58.768 44.000 0.00 0.00 0.00 2.43
128 129 5.067273 CCTATCTTCCACTGATACGACTCT 58.933 45.833 0.00 0.00 0.00 3.24
129 130 4.216687 CCCTATCTTCCACTGATACGACTC 59.783 50.000 0.00 0.00 0.00 3.36
130 131 4.145807 CCCTATCTTCCACTGATACGACT 58.854 47.826 0.00 0.00 0.00 4.18
131 132 3.305471 GCCCTATCTTCCACTGATACGAC 60.305 52.174 0.00 0.00 0.00 4.34
132 133 2.891580 GCCCTATCTTCCACTGATACGA 59.108 50.000 0.00 0.00 0.00 3.43
133 134 2.894126 AGCCCTATCTTCCACTGATACG 59.106 50.000 0.00 0.00 0.00 3.06
134 135 4.345257 TCAAGCCCTATCTTCCACTGATAC 59.655 45.833 0.00 0.00 0.00 2.24
135 136 4.556697 TCAAGCCCTATCTTCCACTGATA 58.443 43.478 0.00 0.00 0.00 2.15
136 137 3.387962 TCAAGCCCTATCTTCCACTGAT 58.612 45.455 0.00 0.00 0.00 2.90
137 138 2.768527 CTCAAGCCCTATCTTCCACTGA 59.231 50.000 0.00 0.00 0.00 3.41
138 139 2.768527 TCTCAAGCCCTATCTTCCACTG 59.231 50.000 0.00 0.00 0.00 3.66
139 140 3.037549 CTCTCAAGCCCTATCTTCCACT 58.962 50.000 0.00 0.00 0.00 4.00
140 141 2.103941 CCTCTCAAGCCCTATCTTCCAC 59.896 54.545 0.00 0.00 0.00 4.02
141 142 2.023015 TCCTCTCAAGCCCTATCTTCCA 60.023 50.000 0.00 0.00 0.00 3.53
142 143 2.683768 TCCTCTCAAGCCCTATCTTCC 58.316 52.381 0.00 0.00 0.00 3.46
143 144 6.619329 AATATCCTCTCAAGCCCTATCTTC 57.381 41.667 0.00 0.00 0.00 2.87
144 145 6.331307 ACAAATATCCTCTCAAGCCCTATCTT 59.669 38.462 0.00 0.00 0.00 2.40
145 146 5.848921 ACAAATATCCTCTCAAGCCCTATCT 59.151 40.000 0.00 0.00 0.00 1.98
146 147 6.120507 ACAAATATCCTCTCAAGCCCTATC 57.879 41.667 0.00 0.00 0.00 2.08
147 148 6.331307 AGAACAAATATCCTCTCAAGCCCTAT 59.669 38.462 0.00 0.00 0.00 2.57
148 149 5.667626 AGAACAAATATCCTCTCAAGCCCTA 59.332 40.000 0.00 0.00 0.00 3.53
149 150 4.476479 AGAACAAATATCCTCTCAAGCCCT 59.524 41.667 0.00 0.00 0.00 5.19
150 151 4.786425 AGAACAAATATCCTCTCAAGCCC 58.214 43.478 0.00 0.00 0.00 5.19
151 152 5.760743 GGTAGAACAAATATCCTCTCAAGCC 59.239 44.000 0.00 0.00 0.00 4.35
152 153 6.587273 AGGTAGAACAAATATCCTCTCAAGC 58.413 40.000 0.00 0.00 0.00 4.01
155 156 8.204836 GCTAAAGGTAGAACAAATATCCTCTCA 58.795 37.037 0.00 0.00 0.00 3.27
156 157 8.425703 AGCTAAAGGTAGAACAAATATCCTCTC 58.574 37.037 0.00 0.00 0.00 3.20
157 158 8.325477 AGCTAAAGGTAGAACAAATATCCTCT 57.675 34.615 0.00 0.00 0.00 3.69
158 159 7.658167 GGAGCTAAAGGTAGAACAAATATCCTC 59.342 40.741 0.00 0.00 0.00 3.71
159 160 7.348537 AGGAGCTAAAGGTAGAACAAATATCCT 59.651 37.037 0.00 0.00 0.00 3.24
160 161 7.510407 AGGAGCTAAAGGTAGAACAAATATCC 58.490 38.462 0.00 0.00 0.00 2.59
161 162 7.382759 CGAGGAGCTAAAGGTAGAACAAATATC 59.617 40.741 0.00 0.00 0.00 1.63
162 163 7.147707 ACGAGGAGCTAAAGGTAGAACAAATAT 60.148 37.037 0.00 0.00 0.00 1.28
163 164 6.154021 ACGAGGAGCTAAAGGTAGAACAAATA 59.846 38.462 0.00 0.00 0.00 1.40
164 165 5.046520 ACGAGGAGCTAAAGGTAGAACAAAT 60.047 40.000 0.00 0.00 0.00 2.32
165 166 4.282703 ACGAGGAGCTAAAGGTAGAACAAA 59.717 41.667 0.00 0.00 0.00 2.83
166 167 3.830755 ACGAGGAGCTAAAGGTAGAACAA 59.169 43.478 0.00 0.00 0.00 2.83
167 168 3.428532 ACGAGGAGCTAAAGGTAGAACA 58.571 45.455 0.00 0.00 0.00 3.18
168 169 4.174762 CAACGAGGAGCTAAAGGTAGAAC 58.825 47.826 0.00 0.00 0.00 3.01
169 170 3.194968 CCAACGAGGAGCTAAAGGTAGAA 59.805 47.826 0.00 0.00 41.22 2.10
170 171 2.758979 CCAACGAGGAGCTAAAGGTAGA 59.241 50.000 0.00 0.00 41.22 2.59
171 172 2.159085 CCCAACGAGGAGCTAAAGGTAG 60.159 54.545 0.00 0.00 41.22 3.18
172 173 1.829222 CCCAACGAGGAGCTAAAGGTA 59.171 52.381 0.00 0.00 41.22 3.08
173 174 0.613777 CCCAACGAGGAGCTAAAGGT 59.386 55.000 0.00 0.00 41.22 3.50
174 175 0.613777 ACCCAACGAGGAGCTAAAGG 59.386 55.000 0.00 0.00 41.22 3.11
175 176 2.076863 CAACCCAACGAGGAGCTAAAG 58.923 52.381 0.00 0.00 41.22 1.85
176 177 1.271163 CCAACCCAACGAGGAGCTAAA 60.271 52.381 0.00 0.00 41.22 1.85
177 178 0.323629 CCAACCCAACGAGGAGCTAA 59.676 55.000 0.00 0.00 41.22 3.09
178 179 0.543410 TCCAACCCAACGAGGAGCTA 60.543 55.000 0.00 0.00 41.22 3.32
179 180 1.841556 TCCAACCCAACGAGGAGCT 60.842 57.895 0.00 0.00 41.22 4.09
180 181 1.671379 GTCCAACCCAACGAGGAGC 60.671 63.158 0.00 0.00 41.22 4.70
181 182 0.602905 GTGTCCAACCCAACGAGGAG 60.603 60.000 0.00 0.00 41.22 3.69
182 183 1.052124 AGTGTCCAACCCAACGAGGA 61.052 55.000 0.00 0.00 41.22 3.71
183 184 0.602905 GAGTGTCCAACCCAACGAGG 60.603 60.000 0.00 0.00 37.03 4.63
184 185 0.393077 AGAGTGTCCAACCCAACGAG 59.607 55.000 0.00 0.00 0.00 4.18
185 186 0.834612 AAGAGTGTCCAACCCAACGA 59.165 50.000 0.00 0.00 0.00 3.85
186 187 2.140717 GTAAGAGTGTCCAACCCAACG 58.859 52.381 0.00 0.00 0.00 4.10
187 188 3.487120 AGTAAGAGTGTCCAACCCAAC 57.513 47.619 0.00 0.00 0.00 3.77
188 189 5.568023 CGATAAGTAAGAGTGTCCAACCCAA 60.568 44.000 0.00 0.00 0.00 4.12
189 190 4.081862 CGATAAGTAAGAGTGTCCAACCCA 60.082 45.833 0.00 0.00 0.00 4.51
190 191 4.159135 TCGATAAGTAAGAGTGTCCAACCC 59.841 45.833 0.00 0.00 0.00 4.11
191 192 5.320549 TCGATAAGTAAGAGTGTCCAACC 57.679 43.478 0.00 0.00 0.00 3.77
192 193 7.088905 TCTTTCGATAAGTAAGAGTGTCCAAC 58.911 38.462 0.00 0.00 32.40 3.77
193 194 7.223260 TCTTTCGATAAGTAAGAGTGTCCAA 57.777 36.000 0.00 0.00 32.40 3.53
194 195 6.829229 TCTTTCGATAAGTAAGAGTGTCCA 57.171 37.500 0.00 0.00 32.40 4.02
207 208 9.447040 CGTGATATTTGTAGTCTCTTTCGATAA 57.553 33.333 0.00 0.00 0.00 1.75
208 209 8.618677 ACGTGATATTTGTAGTCTCTTTCGATA 58.381 33.333 0.00 0.00 0.00 2.92
209 210 7.481642 ACGTGATATTTGTAGTCTCTTTCGAT 58.518 34.615 0.00 0.00 0.00 3.59
210 211 6.849502 ACGTGATATTTGTAGTCTCTTTCGA 58.150 36.000 0.00 0.00 0.00 3.71
211 212 8.783999 ATACGTGATATTTGTAGTCTCTTTCG 57.216 34.615 0.00 0.00 0.00 3.46
216 217 8.903723 GCAAGTATACGTGATATTTGTAGTCTC 58.096 37.037 21.04 0.00 39.04 3.36
217 218 7.590322 CGCAAGTATACGTGATATTTGTAGTCT 59.410 37.037 21.04 0.00 39.04 3.24
218 219 7.149015 CCGCAAGTATACGTGATATTTGTAGTC 60.149 40.741 21.04 0.00 39.04 2.59
219 220 6.639686 CCGCAAGTATACGTGATATTTGTAGT 59.360 38.462 21.04 0.00 39.04 2.73
220 221 6.089016 CCCGCAAGTATACGTGATATTTGTAG 59.911 42.308 21.04 6.30 39.04 2.74
221 222 5.921976 CCCGCAAGTATACGTGATATTTGTA 59.078 40.000 21.04 0.00 39.04 2.41
222 223 4.748102 CCCGCAAGTATACGTGATATTTGT 59.252 41.667 21.04 0.00 39.04 2.83
223 224 4.748102 ACCCGCAAGTATACGTGATATTTG 59.252 41.667 21.04 8.39 39.54 2.32
224 225 4.952460 ACCCGCAAGTATACGTGATATTT 58.048 39.130 21.04 0.00 0.00 1.40
225 226 4.595762 ACCCGCAAGTATACGTGATATT 57.404 40.909 21.04 1.13 0.00 1.28
226 227 4.595762 AACCCGCAAGTATACGTGATAT 57.404 40.909 21.04 1.98 0.00 1.63
227 228 5.241285 TGATAACCCGCAAGTATACGTGATA 59.759 40.000 21.04 6.96 0.00 2.15
228 229 2.973694 AACCCGCAAGTATACGTGAT 57.026 45.000 21.04 1.99 0.00 3.06
229 230 3.380954 TGATAACCCGCAAGTATACGTGA 59.619 43.478 21.04 1.00 0.00 4.35
230 231 3.708890 TGATAACCCGCAAGTATACGTG 58.291 45.455 13.71 13.71 0.00 4.49
231 232 3.382546 ACTGATAACCCGCAAGTATACGT 59.617 43.478 0.00 0.00 0.00 3.57
232 233 3.973657 ACTGATAACCCGCAAGTATACG 58.026 45.455 0.00 0.00 0.00 3.06
233 234 6.081872 AGTACTGATAACCCGCAAGTATAC 57.918 41.667 0.00 0.00 0.00 1.47
234 235 5.829391 TGAGTACTGATAACCCGCAAGTATA 59.171 40.000 0.00 0.00 0.00 1.47
235 236 4.647853 TGAGTACTGATAACCCGCAAGTAT 59.352 41.667 0.00 0.00 0.00 2.12
236 237 4.018490 TGAGTACTGATAACCCGCAAGTA 58.982 43.478 0.00 0.00 0.00 2.24
237 238 2.829720 TGAGTACTGATAACCCGCAAGT 59.170 45.455 0.00 0.00 0.00 3.16
238 239 3.520290 TGAGTACTGATAACCCGCAAG 57.480 47.619 0.00 0.00 0.00 4.01
239 240 3.007074 TGTTGAGTACTGATAACCCGCAA 59.993 43.478 0.00 0.00 0.00 4.85
240 241 2.563620 TGTTGAGTACTGATAACCCGCA 59.436 45.455 0.00 0.00 0.00 5.69
241 242 3.187700 CTGTTGAGTACTGATAACCCGC 58.812 50.000 0.00 0.00 0.00 6.13
242 243 3.187700 GCTGTTGAGTACTGATAACCCG 58.812 50.000 0.00 0.00 0.00 5.28
243 244 3.187700 CGCTGTTGAGTACTGATAACCC 58.812 50.000 0.00 0.00 0.00 4.11
244 245 3.846360 ACGCTGTTGAGTACTGATAACC 58.154 45.455 0.00 0.00 0.00 2.85
245 246 3.858238 GGACGCTGTTGAGTACTGATAAC 59.142 47.826 0.00 3.74 0.00 1.89
246 247 3.762288 AGGACGCTGTTGAGTACTGATAA 59.238 43.478 0.00 0.00 35.80 1.75
247 248 3.353557 AGGACGCTGTTGAGTACTGATA 58.646 45.455 0.00 0.00 35.80 2.15
248 249 2.164624 GAGGACGCTGTTGAGTACTGAT 59.835 50.000 0.00 0.00 37.29 2.90
249 250 1.540267 GAGGACGCTGTTGAGTACTGA 59.460 52.381 0.00 0.00 37.29 3.41
250 251 1.729472 CGAGGACGCTGTTGAGTACTG 60.729 57.143 0.00 0.00 37.29 2.74
251 252 0.522180 CGAGGACGCTGTTGAGTACT 59.478 55.000 0.00 0.00 39.92 2.73
252 253 0.240411 ACGAGGACGCTGTTGAGTAC 59.760 55.000 0.00 0.00 43.96 2.73
253 254 0.956633 AACGAGGACGCTGTTGAGTA 59.043 50.000 0.00 0.00 43.96 2.59
254 255 0.318784 GAACGAGGACGCTGTTGAGT 60.319 55.000 0.00 0.00 43.96 3.41
255 256 0.318699 TGAACGAGGACGCTGTTGAG 60.319 55.000 0.00 0.00 43.96 3.02
256 257 0.596600 GTGAACGAGGACGCTGTTGA 60.597 55.000 0.00 0.00 43.96 3.18
257 258 1.853319 GTGAACGAGGACGCTGTTG 59.147 57.895 0.00 0.00 43.96 3.33
258 259 1.660575 CGTGAACGAGGACGCTGTT 60.661 57.895 0.00 0.00 43.96 3.16
259 260 2.050351 CGTGAACGAGGACGCTGT 60.050 61.111 0.00 0.00 43.96 4.40
260 261 2.254350 TCGTGAACGAGGACGCTG 59.746 61.111 0.50 0.00 44.22 5.18
269 270 1.137513 GGGAGACAAGTTCGTGAACG 58.862 55.000 7.07 0.00 45.50 3.95
270 271 1.137513 CGGGAGACAAGTTCGTGAAC 58.862 55.000 4.58 4.58 41.45 3.18
271 272 0.032952 CCGGGAGACAAGTTCGTGAA 59.967 55.000 0.00 0.00 0.00 3.18
272 273 1.663739 CCGGGAGACAAGTTCGTGA 59.336 57.895 0.00 0.00 0.00 4.35
273 274 2.027625 GCCGGGAGACAAGTTCGTG 61.028 63.158 2.18 0.00 0.00 4.35
274 275 2.156051 GAGCCGGGAGACAAGTTCGT 62.156 60.000 2.18 0.00 0.00 3.85
275 276 1.446272 GAGCCGGGAGACAAGTTCG 60.446 63.158 2.18 0.00 0.00 3.95
276 277 1.135053 GTAGAGCCGGGAGACAAGTTC 60.135 57.143 2.18 0.00 0.00 3.01
277 278 0.896226 GTAGAGCCGGGAGACAAGTT 59.104 55.000 2.18 0.00 0.00 2.66
278 279 0.039911 AGTAGAGCCGGGAGACAAGT 59.960 55.000 2.18 0.00 0.00 3.16
279 280 0.741915 GAGTAGAGCCGGGAGACAAG 59.258 60.000 2.18 0.00 0.00 3.16
280 281 0.039180 TGAGTAGAGCCGGGAGACAA 59.961 55.000 2.18 0.00 0.00 3.18
281 282 0.039180 TTGAGTAGAGCCGGGAGACA 59.961 55.000 2.18 0.00 0.00 3.41
282 283 1.135333 CTTTGAGTAGAGCCGGGAGAC 59.865 57.143 2.18 0.00 0.00 3.36
283 284 1.475403 CTTTGAGTAGAGCCGGGAGA 58.525 55.000 2.18 0.00 0.00 3.71
284 285 0.179097 GCTTTGAGTAGAGCCGGGAG 60.179 60.000 2.18 0.00 32.80 4.30
285 286 0.902984 TGCTTTGAGTAGAGCCGGGA 60.903 55.000 2.18 0.00 38.11 5.14
286 287 0.036388 TTGCTTTGAGTAGAGCCGGG 60.036 55.000 2.18 0.00 38.11 5.73
287 288 1.066858 TCTTGCTTTGAGTAGAGCCGG 60.067 52.381 0.00 0.00 38.11 6.13
288 289 2.370281 TCTTGCTTTGAGTAGAGCCG 57.630 50.000 0.00 0.00 38.11 5.52
289 290 3.187432 GTGTTCTTGCTTTGAGTAGAGCC 59.813 47.826 0.00 0.00 38.11 4.70
290 291 3.809832 TGTGTTCTTGCTTTGAGTAGAGC 59.190 43.478 0.00 0.00 39.33 4.09
291 292 5.294306 TGTTGTGTTCTTGCTTTGAGTAGAG 59.706 40.000 0.00 0.00 0.00 2.43
292 293 5.182487 TGTTGTGTTCTTGCTTTGAGTAGA 58.818 37.500 0.00 0.00 0.00 2.59
293 294 5.484173 TGTTGTGTTCTTGCTTTGAGTAG 57.516 39.130 0.00 0.00 0.00 2.57
294 295 5.182190 TGTTGTTGTGTTCTTGCTTTGAGTA 59.818 36.000 0.00 0.00 0.00 2.59
295 296 4.022416 TGTTGTTGTGTTCTTGCTTTGAGT 60.022 37.500 0.00 0.00 0.00 3.41
296 297 4.484236 TGTTGTTGTGTTCTTGCTTTGAG 58.516 39.130 0.00 0.00 0.00 3.02
297 298 4.217334 TCTGTTGTTGTGTTCTTGCTTTGA 59.783 37.500 0.00 0.00 0.00 2.69
298 299 4.484236 TCTGTTGTTGTGTTCTTGCTTTG 58.516 39.130 0.00 0.00 0.00 2.77
299 300 4.782019 TCTGTTGTTGTGTTCTTGCTTT 57.218 36.364 0.00 0.00 0.00 3.51
300 301 4.782019 TTCTGTTGTTGTGTTCTTGCTT 57.218 36.364 0.00 0.00 0.00 3.91
301 302 4.989279 ATTCTGTTGTTGTGTTCTTGCT 57.011 36.364 0.00 0.00 0.00 3.91
302 303 6.033341 TGTTATTCTGTTGTTGTGTTCTTGC 58.967 36.000 0.00 0.00 0.00 4.01
303 304 8.633075 ATTGTTATTCTGTTGTTGTGTTCTTG 57.367 30.769 0.00 0.00 0.00 3.02
304 305 8.465999 TGATTGTTATTCTGTTGTTGTGTTCTT 58.534 29.630 0.00 0.00 0.00 2.52
305 306 7.995289 TGATTGTTATTCTGTTGTTGTGTTCT 58.005 30.769 0.00 0.00 0.00 3.01
306 307 8.627487 TTGATTGTTATTCTGTTGTTGTGTTC 57.373 30.769 0.00 0.00 0.00 3.18
307 308 9.248291 GATTGATTGTTATTCTGTTGTTGTGTT 57.752 29.630 0.00 0.00 0.00 3.32
308 309 8.412456 TGATTGATTGTTATTCTGTTGTTGTGT 58.588 29.630 0.00 0.00 0.00 3.72
309 310 8.800231 TGATTGATTGTTATTCTGTTGTTGTG 57.200 30.769 0.00 0.00 0.00 3.33
310 311 9.414295 CATGATTGATTGTTATTCTGTTGTTGT 57.586 29.630 0.00 0.00 0.00 3.32
311 312 8.865978 CCATGATTGATTGTTATTCTGTTGTTG 58.134 33.333 0.00 0.00 0.00 3.33
312 313 8.587608 ACCATGATTGATTGTTATTCTGTTGTT 58.412 29.630 0.00 0.00 0.00 2.83
313 314 8.030692 CACCATGATTGATTGTTATTCTGTTGT 58.969 33.333 0.00 0.00 0.00 3.32
314 315 7.009815 GCACCATGATTGATTGTTATTCTGTTG 59.990 37.037 0.00 0.00 0.00 3.33
315 316 7.037438 GCACCATGATTGATTGTTATTCTGTT 58.963 34.615 0.00 0.00 0.00 3.16
316 317 6.153170 TGCACCATGATTGATTGTTATTCTGT 59.847 34.615 0.00 0.00 0.00 3.41
317 318 6.566141 TGCACCATGATTGATTGTTATTCTG 58.434 36.000 0.00 0.00 0.00 3.02
318 319 6.778834 TGCACCATGATTGATTGTTATTCT 57.221 33.333 0.00 0.00 0.00 2.40
319 320 7.517734 GCATTGCACCATGATTGATTGTTATTC 60.518 37.037 3.15 0.00 0.00 1.75
320 321 6.259167 GCATTGCACCATGATTGATTGTTATT 59.741 34.615 3.15 0.00 0.00 1.40
321 322 5.756347 GCATTGCACCATGATTGATTGTTAT 59.244 36.000 3.15 0.00 0.00 1.89
322 323 5.110598 GCATTGCACCATGATTGATTGTTA 58.889 37.500 3.15 0.00 0.00 2.41
323 324 3.936453 GCATTGCACCATGATTGATTGTT 59.064 39.130 3.15 0.00 0.00 2.83
324 325 3.527533 GCATTGCACCATGATTGATTGT 58.472 40.909 3.15 0.00 0.00 2.71
325 326 2.538037 CGCATTGCACCATGATTGATTG 59.462 45.455 9.69 0.00 0.00 2.67
326 327 2.816689 CGCATTGCACCATGATTGATT 58.183 42.857 9.69 0.00 0.00 2.57
327 328 1.537348 GCGCATTGCACCATGATTGAT 60.537 47.619 9.69 0.00 45.45 2.57
328 329 0.179132 GCGCATTGCACCATGATTGA 60.179 50.000 9.69 0.00 45.45 2.57
329 330 2.293765 GCGCATTGCACCATGATTG 58.706 52.632 9.69 0.00 45.45 2.67
330 331 4.819082 GCGCATTGCACCATGATT 57.181 50.000 9.69 0.00 45.45 2.57
343 344 2.956194 CATCCTGTTGCTTGCGCA 59.044 55.556 5.66 5.66 46.24 6.09
344 345 2.505557 GCATCCTGTTGCTTGCGC 60.506 61.111 0.00 0.00 39.57 6.09
345 346 0.318869 TTTGCATCCTGTTGCTTGCG 60.319 50.000 0.00 0.00 43.18 4.85
346 347 1.528161 GTTTTGCATCCTGTTGCTTGC 59.472 47.619 0.00 0.00 43.18 4.01
347 348 2.823984 TGTTTTGCATCCTGTTGCTTG 58.176 42.857 0.00 0.00 43.18 4.01
348 349 3.069872 TCATGTTTTGCATCCTGTTGCTT 59.930 39.130 0.00 0.00 43.18 3.91
349 350 2.629137 TCATGTTTTGCATCCTGTTGCT 59.371 40.909 0.00 0.00 43.18 3.91
350 351 3.029320 TCATGTTTTGCATCCTGTTGC 57.971 42.857 0.00 0.00 43.07 4.17
351 352 5.684184 CGATATCATGTTTTGCATCCTGTTG 59.316 40.000 3.12 0.00 35.19 3.33
352 353 5.589855 TCGATATCATGTTTTGCATCCTGTT 59.410 36.000 3.12 0.00 35.19 3.16
353 354 5.125356 TCGATATCATGTTTTGCATCCTGT 58.875 37.500 3.12 0.00 35.19 4.00
354 355 5.678132 TCGATATCATGTTTTGCATCCTG 57.322 39.130 3.12 0.00 35.19 3.86
355 356 6.675026 CATTCGATATCATGTTTTGCATCCT 58.325 36.000 3.12 0.00 35.19 3.24
356 357 5.344128 GCATTCGATATCATGTTTTGCATCC 59.656 40.000 3.12 0.00 35.19 3.51
357 358 5.916320 TGCATTCGATATCATGTTTTGCATC 59.084 36.000 3.12 0.00 35.19 3.91
358 359 5.834169 TGCATTCGATATCATGTTTTGCAT 58.166 33.333 3.12 0.00 38.60 3.96
359 360 5.246145 TGCATTCGATATCATGTTTTGCA 57.754 34.783 3.12 6.17 35.42 4.08
360 361 7.080099 ACTATGCATTCGATATCATGTTTTGC 58.920 34.615 3.54 3.78 0.00 3.68
363 364 9.657419 TCATACTATGCATTCGATATCATGTTT 57.343 29.630 3.54 0.00 0.00 2.83
364 365 9.310716 CTCATACTATGCATTCGATATCATGTT 57.689 33.333 3.54 0.00 0.00 2.71
365 366 7.924947 CCTCATACTATGCATTCGATATCATGT 59.075 37.037 3.54 0.00 0.00 3.21
366 367 7.924947 ACCTCATACTATGCATTCGATATCATG 59.075 37.037 3.54 1.23 0.00 3.07
367 368 7.924947 CACCTCATACTATGCATTCGATATCAT 59.075 37.037 3.54 0.00 0.00 2.45
368 369 7.260603 CACCTCATACTATGCATTCGATATCA 58.739 38.462 3.54 0.00 0.00 2.15
369 370 6.199908 GCACCTCATACTATGCATTCGATATC 59.800 42.308 3.54 0.00 38.00 1.63
370 371 6.045318 GCACCTCATACTATGCATTCGATAT 58.955 40.000 3.54 0.00 38.00 1.63
371 372 5.047377 TGCACCTCATACTATGCATTCGATA 60.047 40.000 3.54 0.00 42.92 2.92
372 373 4.248859 GCACCTCATACTATGCATTCGAT 58.751 43.478 3.54 0.00 38.00 3.59
373 374 3.069443 TGCACCTCATACTATGCATTCGA 59.931 43.478 3.54 0.00 42.92 3.71
374 375 3.392882 TGCACCTCATACTATGCATTCG 58.607 45.455 3.54 0.00 42.92 3.34
375 376 5.756195 TTTGCACCTCATACTATGCATTC 57.244 39.130 3.54 0.00 46.75 2.67
376 377 5.508489 GCATTTGCACCTCATACTATGCATT 60.508 40.000 3.54 0.00 46.75 3.56
377 378 4.022589 GCATTTGCACCTCATACTATGCAT 60.023 41.667 3.79 3.79 46.75 3.96
378 379 3.316029 GCATTTGCACCTCATACTATGCA 59.684 43.478 0.00 0.00 45.94 3.96
379 380 3.893720 GCATTTGCACCTCATACTATGC 58.106 45.455 0.00 0.00 41.59 3.14
399 400 0.250901 ATTCCGGAGCACCCATATGC 60.251 55.000 3.34 0.00 46.50 3.14
400 401 1.527034 CATTCCGGAGCACCCATATG 58.473 55.000 3.34 0.00 34.14 1.78
401 402 0.401738 CCATTCCGGAGCACCCATAT 59.598 55.000 3.34 0.00 36.56 1.78
402 403 0.692756 TCCATTCCGGAGCACCCATA 60.693 55.000 3.34 0.00 39.64 2.74
403 404 2.000701 TCCATTCCGGAGCACCCAT 61.001 57.895 3.34 0.00 39.64 4.00
404 405 2.609299 TCCATTCCGGAGCACCCA 60.609 61.111 3.34 0.00 39.64 4.51
411 412 3.891977 TGTTCATTGTTTTCCATTCCGGA 59.108 39.130 0.00 0.00 44.40 5.14
412 413 4.250116 TGTTCATTGTTTTCCATTCCGG 57.750 40.909 0.00 0.00 0.00 5.14
413 414 4.626604 CCATGTTCATTGTTTTCCATTCCG 59.373 41.667 0.00 0.00 0.00 4.30
414 415 4.392754 GCCATGTTCATTGTTTTCCATTCC 59.607 41.667 0.00 0.00 0.00 3.01
415 416 4.996122 TGCCATGTTCATTGTTTTCCATTC 59.004 37.500 0.00 0.00 0.00 2.67
416 417 4.756135 GTGCCATGTTCATTGTTTTCCATT 59.244 37.500 0.00 0.00 0.00 3.16
417 418 4.040706 AGTGCCATGTTCATTGTTTTCCAT 59.959 37.500 0.00 0.00 0.00 3.41
418 419 3.387374 AGTGCCATGTTCATTGTTTTCCA 59.613 39.130 0.00 0.00 0.00 3.53
419 420 3.993920 AGTGCCATGTTCATTGTTTTCC 58.006 40.909 0.00 0.00 0.00 3.13
420 421 8.810427 CAATATAGTGCCATGTTCATTGTTTTC 58.190 33.333 0.00 0.00 0.00 2.29
421 422 7.765360 CCAATATAGTGCCATGTTCATTGTTTT 59.235 33.333 0.00 0.00 0.00 2.43
422 423 7.093377 ACCAATATAGTGCCATGTTCATTGTTT 60.093 33.333 0.00 0.00 0.00 2.83
423 424 6.380846 ACCAATATAGTGCCATGTTCATTGTT 59.619 34.615 0.00 0.00 0.00 2.83
424 425 5.893255 ACCAATATAGTGCCATGTTCATTGT 59.107 36.000 0.00 0.00 0.00 2.71
425 426 6.395426 ACCAATATAGTGCCATGTTCATTG 57.605 37.500 0.00 0.00 0.00 2.82
426 427 8.710749 ATTACCAATATAGTGCCATGTTCATT 57.289 30.769 0.00 0.00 0.00 2.57
427 428 7.394359 GGATTACCAATATAGTGCCATGTTCAT 59.606 37.037 0.00 0.00 35.97 2.57
428 429 6.714810 GGATTACCAATATAGTGCCATGTTCA 59.285 38.462 0.00 0.00 35.97 3.18
429 430 6.714810 TGGATTACCAATATAGTGCCATGTTC 59.285 38.462 0.00 0.00 43.91 3.18
430 431 6.609876 TGGATTACCAATATAGTGCCATGTT 58.390 36.000 0.00 0.00 43.91 2.71
431 432 6.199557 TGGATTACCAATATAGTGCCATGT 57.800 37.500 0.00 0.00 43.91 3.21
445 446 1.005805 AGTGGCATGCTTGGATTACCA 59.994 47.619 18.92 0.00 45.34 3.25
446 447 1.406539 CAGTGGCATGCTTGGATTACC 59.593 52.381 18.92 0.00 0.00 2.85
447 448 1.406539 CCAGTGGCATGCTTGGATTAC 59.593 52.381 23.32 10.57 0.00 1.89
448 449 1.284491 TCCAGTGGCATGCTTGGATTA 59.716 47.619 25.10 11.42 0.00 1.75
449 450 0.040058 TCCAGTGGCATGCTTGGATT 59.960 50.000 25.10 4.12 0.00 3.01
450 451 0.260816 ATCCAGTGGCATGCTTGGAT 59.739 50.000 29.63 29.63 0.00 3.41
451 452 0.918258 TATCCAGTGGCATGCTTGGA 59.082 50.000 28.45 28.45 0.00 3.53
452 453 1.766494 TTATCCAGTGGCATGCTTGG 58.234 50.000 18.92 21.05 0.00 3.61
453 454 4.116961 CAATTTATCCAGTGGCATGCTTG 58.883 43.478 18.92 13.26 0.00 4.01
454 455 3.133362 CCAATTTATCCAGTGGCATGCTT 59.867 43.478 18.92 0.46 0.00 3.91
455 456 2.696707 CCAATTTATCCAGTGGCATGCT 59.303 45.455 18.92 0.00 0.00 3.79
456 457 2.694628 TCCAATTTATCCAGTGGCATGC 59.305 45.455 9.90 9.90 0.00 4.06
457 458 4.646040 TCTTCCAATTTATCCAGTGGCATG 59.354 41.667 3.51 0.00 0.00 4.06
458 459 4.870636 TCTTCCAATTTATCCAGTGGCAT 58.129 39.130 3.51 1.75 0.00 4.40
459 460 4.314522 TCTTCCAATTTATCCAGTGGCA 57.685 40.909 3.51 0.00 0.00 4.92
460 461 5.859205 AATCTTCCAATTTATCCAGTGGC 57.141 39.130 3.51 0.00 0.00 5.01
461 462 6.460123 CCGAAATCTTCCAATTTATCCAGTGG 60.460 42.308 1.40 1.40 0.00 4.00
462 463 6.095440 ACCGAAATCTTCCAATTTATCCAGTG 59.905 38.462 0.00 0.00 0.00 3.66
463 464 6.187682 ACCGAAATCTTCCAATTTATCCAGT 58.812 36.000 0.00 0.00 0.00 4.00
464 465 6.699575 ACCGAAATCTTCCAATTTATCCAG 57.300 37.500 0.00 0.00 0.00 3.86
465 466 6.661377 TCAACCGAAATCTTCCAATTTATCCA 59.339 34.615 0.00 0.00 0.00 3.41
466 467 7.095695 TCAACCGAAATCTTCCAATTTATCC 57.904 36.000 0.00 0.00 0.00 2.59
467 468 8.980143 TTTCAACCGAAATCTTCCAATTTATC 57.020 30.769 0.00 0.00 36.19 1.75
481 482 8.937884 TGTTCTTTATATCGATTTCAACCGAAA 58.062 29.630 1.71 0.00 44.99 3.46
482 483 8.481974 TGTTCTTTATATCGATTTCAACCGAA 57.518 30.769 1.71 0.00 38.36 4.30
483 484 8.547894 CATGTTCTTTATATCGATTTCAACCGA 58.452 33.333 1.71 0.00 39.25 4.69
484 485 8.547894 TCATGTTCTTTATATCGATTTCAACCG 58.452 33.333 1.71 0.00 0.00 4.44
485 486 9.869844 CTCATGTTCTTTATATCGATTTCAACC 57.130 33.333 1.71 0.00 0.00 3.77
486 487 9.869844 CCTCATGTTCTTTATATCGATTTCAAC 57.130 33.333 1.71 0.00 0.00 3.18
487 488 9.830975 TCCTCATGTTCTTTATATCGATTTCAA 57.169 29.630 1.71 0.00 0.00 2.69
488 489 9.830975 TTCCTCATGTTCTTTATATCGATTTCA 57.169 29.630 1.71 0.00 0.00 2.69
490 491 8.765219 CGTTCCTCATGTTCTTTATATCGATTT 58.235 33.333 1.71 0.00 0.00 2.17
491 492 7.385205 CCGTTCCTCATGTTCTTTATATCGATT 59.615 37.037 1.71 0.00 0.00 3.34
492 493 6.868864 CCGTTCCTCATGTTCTTTATATCGAT 59.131 38.462 2.16 2.16 0.00 3.59
493 494 6.040054 TCCGTTCCTCATGTTCTTTATATCGA 59.960 38.462 0.00 0.00 0.00 3.59
494 495 6.213677 TCCGTTCCTCATGTTCTTTATATCG 58.786 40.000 0.00 0.00 0.00 2.92
495 496 7.360438 GCATCCGTTCCTCATGTTCTTTATATC 60.360 40.741 0.00 0.00 0.00 1.63
496 497 6.428159 GCATCCGTTCCTCATGTTCTTTATAT 59.572 38.462 0.00 0.00 0.00 0.86
497 498 5.758296 GCATCCGTTCCTCATGTTCTTTATA 59.242 40.000 0.00 0.00 0.00 0.98
498 499 4.576463 GCATCCGTTCCTCATGTTCTTTAT 59.424 41.667 0.00 0.00 0.00 1.40
499 500 3.938963 GCATCCGTTCCTCATGTTCTTTA 59.061 43.478 0.00 0.00 0.00 1.85
500 501 2.749621 GCATCCGTTCCTCATGTTCTTT 59.250 45.455 0.00 0.00 0.00 2.52
501 502 2.290260 TGCATCCGTTCCTCATGTTCTT 60.290 45.455 0.00 0.00 0.00 2.52
502 503 1.278985 TGCATCCGTTCCTCATGTTCT 59.721 47.619 0.00 0.00 0.00 3.01
503 504 1.398390 GTGCATCCGTTCCTCATGTTC 59.602 52.381 0.00 0.00 0.00 3.18
504 505 1.271325 TGTGCATCCGTTCCTCATGTT 60.271 47.619 0.00 0.00 0.00 2.71
505 506 0.324614 TGTGCATCCGTTCCTCATGT 59.675 50.000 0.00 0.00 0.00 3.21
506 507 0.729116 GTGTGCATCCGTTCCTCATG 59.271 55.000 0.00 0.00 0.00 3.07
507 508 0.324614 TGTGTGCATCCGTTCCTCAT 59.675 50.000 0.00 0.00 0.00 2.90
508 509 0.107643 TTGTGTGCATCCGTTCCTCA 59.892 50.000 0.00 0.00 0.00 3.86
509 510 0.517316 GTTGTGTGCATCCGTTCCTC 59.483 55.000 0.00 0.00 0.00 3.71
510 511 0.108585 AGTTGTGTGCATCCGTTCCT 59.891 50.000 0.00 0.00 0.00 3.36
511 512 0.517316 GAGTTGTGTGCATCCGTTCC 59.483 55.000 0.00 0.00 0.00 3.62
512 513 1.225855 TGAGTTGTGTGCATCCGTTC 58.774 50.000 0.00 0.00 0.00 3.95
513 514 1.674359 TTGAGTTGTGTGCATCCGTT 58.326 45.000 0.00 0.00 0.00 4.44
514 515 1.333619 GTTTGAGTTGTGTGCATCCGT 59.666 47.619 0.00 0.00 0.00 4.69
515 516 1.334960 GGTTTGAGTTGTGTGCATCCG 60.335 52.381 0.00 0.00 0.00 4.18
516 517 1.334960 CGGTTTGAGTTGTGTGCATCC 60.335 52.381 0.00 0.00 0.00 3.51
517 518 1.333619 ACGGTTTGAGTTGTGTGCATC 59.666 47.619 0.00 0.00 0.00 3.91
518 519 1.065401 CACGGTTTGAGTTGTGTGCAT 59.935 47.619 0.00 0.00 0.00 3.96
519 520 0.449786 CACGGTTTGAGTTGTGTGCA 59.550 50.000 0.00 0.00 0.00 4.57
520 521 0.730265 TCACGGTTTGAGTTGTGTGC 59.270 50.000 0.00 0.00 34.08 4.57
521 522 2.737467 CTCACGGTTTGAGTTGTGTG 57.263 50.000 0.00 0.00 46.12 3.82
529 530 3.791973 ATTGTTTTGCTCACGGTTTGA 57.208 38.095 0.00 0.00 0.00 2.69
530 531 4.800993 TGTTATTGTTTTGCTCACGGTTTG 59.199 37.500 0.00 0.00 0.00 2.93
531 532 5.000012 TGTTATTGTTTTGCTCACGGTTT 58.000 34.783 0.00 0.00 0.00 3.27
532 533 4.640789 TGTTATTGTTTTGCTCACGGTT 57.359 36.364 0.00 0.00 0.00 4.44
533 534 4.640789 TTGTTATTGTTTTGCTCACGGT 57.359 36.364 0.00 0.00 0.00 4.83
534 535 4.143347 GCATTGTTATTGTTTTGCTCACGG 60.143 41.667 0.00 0.00 0.00 4.94
535 536 4.443725 TGCATTGTTATTGTTTTGCTCACG 59.556 37.500 0.00 0.00 0.00 4.35
536 537 5.903764 TGCATTGTTATTGTTTTGCTCAC 57.096 34.783 0.00 0.00 0.00 3.51
537 538 6.915544 TTTGCATTGTTATTGTTTTGCTCA 57.084 29.167 0.00 0.00 0.00 4.26
538 539 7.373966 CAGTTTTGCATTGTTATTGTTTTGCTC 59.626 33.333 0.00 0.00 0.00 4.26
539 540 7.065563 TCAGTTTTGCATTGTTATTGTTTTGCT 59.934 29.630 0.00 0.00 0.00 3.91
540 541 7.185453 TCAGTTTTGCATTGTTATTGTTTTGC 58.815 30.769 0.00 0.00 0.00 3.68
543 544 9.206870 CCTATCAGTTTTGCATTGTTATTGTTT 57.793 29.630 0.00 0.00 0.00 2.83
544 545 7.818930 CCCTATCAGTTTTGCATTGTTATTGTT 59.181 33.333 0.00 0.00 0.00 2.83
545 546 7.039082 ACCCTATCAGTTTTGCATTGTTATTGT 60.039 33.333 0.00 0.00 0.00 2.71
546 547 7.322664 ACCCTATCAGTTTTGCATTGTTATTG 58.677 34.615 0.00 0.00 0.00 1.90
547 548 7.480760 ACCCTATCAGTTTTGCATTGTTATT 57.519 32.000 0.00 0.00 0.00 1.40
548 549 7.480760 AACCCTATCAGTTTTGCATTGTTAT 57.519 32.000 0.00 0.00 0.00 1.89
549 550 6.909550 AACCCTATCAGTTTTGCATTGTTA 57.090 33.333 0.00 0.00 0.00 2.41
550 551 5.806654 AACCCTATCAGTTTTGCATTGTT 57.193 34.783 0.00 0.00 0.00 2.83
551 552 6.909550 TTAACCCTATCAGTTTTGCATTGT 57.090 33.333 0.00 0.00 0.00 2.71
555 556 9.914834 AGTATAATTAACCCTATCAGTTTTGCA 57.085 29.630 0.00 0.00 0.00 4.08
561 562 9.350951 GCCAAAAGTATAATTAACCCTATCAGT 57.649 33.333 0.00 0.00 0.00 3.41
562 563 8.793592 GGCCAAAAGTATAATTAACCCTATCAG 58.206 37.037 0.00 0.00 0.00 2.90
563 564 8.507761 AGGCCAAAAGTATAATTAACCCTATCA 58.492 33.333 5.01 0.00 0.00 2.15
564 565 8.935614 AGGCCAAAAGTATAATTAACCCTATC 57.064 34.615 5.01 0.00 0.00 2.08
579 580 2.583143 GACACCACTAAGGCCAAAAGT 58.417 47.619 5.01 1.48 43.14 2.66
586 587 2.014068 GCAGATGGACACCACTAAGGC 61.014 57.143 0.00 0.00 43.14 4.35
608 609 2.877097 TGCATCTGAGGGCAAAACTA 57.123 45.000 4.53 0.00 37.03 2.24
793 794 1.472376 GCTCTATGCTCAACGGCTCTT 60.472 52.381 0.00 0.00 38.95 2.85
859 862 3.044305 GCCGTGCTCTTTGTCGCT 61.044 61.111 0.00 0.00 0.00 4.93
885 888 3.513438 GCTCTCGCTCTCTCGCCA 61.513 66.667 0.00 0.00 0.00 5.69
908 911 4.148825 AGCTAGCTTCCCACCGCG 62.149 66.667 12.68 0.00 0.00 6.46
934 937 3.315142 CTAGCTTCCCACTGCCGCA 62.315 63.158 0.00 0.00 0.00 5.69
1390 1393 1.473258 ACAGCTAGCTCTCTGTCAGG 58.527 55.000 16.15 2.53 39.11 3.86
1433 1436 4.908601 TGATCTTCAAGCTTCCTAACCA 57.091 40.909 0.00 0.00 0.00 3.67
1462 1465 7.390162 CCAAAAGTATTTGCAAATGGGTATTGT 59.610 33.333 30.43 12.40 43.73 2.71
1905 1910 8.506168 TTCTACTCAATGTAATGCCCTTAAAG 57.494 34.615 0.00 0.00 0.00 1.85
2120 2131 2.971330 TGTGCATTTTCCACCCTTCATT 59.029 40.909 0.00 0.00 32.30 2.57
2161 2174 2.027625 GCGGTCTTGGGTTCGAGTG 61.028 63.158 0.00 0.00 0.00 3.51
2214 2227 3.581101 ACTCTTGCCATCTATCCTAGCA 58.419 45.455 0.00 0.00 0.00 3.49
2266 2279 6.507958 TTTGACAAATTTCACAGTCTCACA 57.492 33.333 0.00 0.00 32.41 3.58
2330 2344 4.887748 TCAGTGCAAAACAAAGGAAAACA 58.112 34.783 0.00 0.00 0.00 2.83
2391 2405 2.335316 AACCAAAACCACGTAGCAGA 57.665 45.000 0.00 0.00 0.00 4.26
2396 2410 3.731089 CCACTCTAACCAAAACCACGTA 58.269 45.455 0.00 0.00 0.00 3.57
2440 2454 5.474189 CCCGTTTAAATCCTAAACCAAGTGA 59.526 40.000 0.00 0.00 34.81 3.41
2464 2478 9.793252 AGTCATGAACTAACATGCAAATTTATC 57.207 29.630 0.00 0.00 44.79 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.