Multiple sequence alignment - TraesCS3B01G128100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G128100 chr3B 100.000 4174 0 0 1 4174 106975283 106971110 0.000000e+00 7709.0
1 TraesCS3B01G128100 chr3B 77.820 266 42 6 3715 3963 194274882 194275147 9.350000e-32 148.0
2 TraesCS3B01G128100 chr3B 78.571 154 24 7 3717 3862 721009134 721008982 4.440000e-15 93.5
3 TraesCS3B01G128100 chr3D 93.207 2591 114 27 2 2568 64478683 64476131 0.000000e+00 3753.0
4 TraesCS3B01G128100 chr3D 93.333 495 25 3 2872 3358 64476078 64475584 0.000000e+00 725.0
5 TraesCS3B01G128100 chr3D 86.930 329 42 1 3842 4169 475021405 475021733 6.590000e-98 368.0
6 TraesCS3B01G128100 chr3D 85.455 330 47 1 3845 4174 313076766 313076438 4.000000e-90 342.0
7 TraesCS3B01G128100 chr3D 76.367 622 90 27 3543 4150 64475514 64474936 8.830000e-72 281.0
8 TraesCS3B01G128100 chr3D 95.683 139 4 2 2566 2704 411511631 411511495 5.430000e-54 222.0
9 TraesCS3B01G128100 chr3D 100.000 39 0 0 3406 3444 64475558 64475520 5.790000e-09 73.1
10 TraesCS3B01G128100 chr3D 94.737 38 2 0 2833 2870 64476136 64476099 4.510000e-05 60.2
11 TraesCS3B01G128100 chr3A 93.377 2461 127 17 124 2575 75031715 75029282 0.000000e+00 3609.0
12 TraesCS3B01G128100 chr3A 86.460 1130 89 25 2699 3793 75029281 75028181 0.000000e+00 1181.0
13 TraesCS3B01G128100 chr3A 83.448 435 64 8 3740 4170 419476601 419477031 8.410000e-107 398.0
14 TraesCS3B01G128100 chr3A 99.065 107 1 0 1 107 75032117 75032011 4.260000e-45 193.0
15 TraesCS3B01G128100 chr2D 80.777 489 72 15 3704 4174 560325387 560324903 3.070000e-96 363.0
16 TraesCS3B01G128100 chr2D 88.066 243 27 2 188 430 56196743 56196983 1.900000e-73 287.0
17 TraesCS3B01G128100 chr2D 87.705 244 28 2 188 431 620601791 620601550 2.460000e-72 283.0
18 TraesCS3B01G128100 chr2D 95.683 139 5 1 2566 2704 592468116 592467979 5.430000e-54 222.0
19 TraesCS3B01G128100 chr2D 95.683 139 4 2 2566 2704 601909043 601909179 5.430000e-54 222.0
20 TraesCS3B01G128100 chr2D 79.121 273 40 12 3706 3963 515540925 515541195 5.550000e-39 172.0
21 TraesCS3B01G128100 chr2D 84.615 130 17 3 3705 3832 120369198 120369326 4.380000e-25 126.0
22 TraesCS3B01G128100 chr5D 80.372 484 78 10 3705 4173 249881074 249880593 6.640000e-93 351.0
23 TraesCS3B01G128100 chr5D 87.295 244 28 3 188 431 273526074 273526314 4.110000e-70 276.0
24 TraesCS3B01G128100 chr5D 98.462 130 2 0 2574 2703 126553242 126553371 3.250000e-56 230.0
25 TraesCS3B01G128100 chr5D 77.656 273 42 8 3715 3970 212570810 212570540 9.350000e-32 148.0
26 TraesCS3B01G128100 chr2A 80.994 463 69 10 3729 4173 700083417 700082956 2.390000e-92 350.0
27 TraesCS3B01G128100 chr2A 87.398 246 27 4 187 431 737498288 737498046 3.180000e-71 279.0
28 TraesCS3B01G128100 chr1D 80.346 463 69 14 3730 4174 344691643 344691185 8.650000e-87 331.0
29 TraesCS3B01G128100 chr1D 89.167 240 24 2 191 430 467628306 467628069 8.770000e-77 298.0
30 TraesCS3B01G128100 chr4B 83.824 340 50 4 3830 4168 66993086 66993421 6.730000e-83 318.0
31 TraesCS3B01G128100 chr6B 84.259 324 49 2 3851 4173 681258511 681258189 8.710000e-82 315.0
32 TraesCS3B01G128100 chr6A 87.649 251 28 3 188 437 601961370 601961122 5.280000e-74 289.0
33 TraesCS3B01G128100 chr1B 87.917 240 27 2 191 430 645529496 645529259 8.830000e-72 281.0
34 TraesCS3B01G128100 chr1B 97.826 138 2 1 2567 2704 409879941 409879805 1.940000e-58 237.0
35 TraesCS3B01G128100 chr1B 93.525 139 6 3 2566 2704 523212659 523212794 1.970000e-48 204.0
36 TraesCS3B01G128100 chr1B 77.061 279 46 11 3703 3963 662628030 662628308 1.210000e-30 145.0
37 TraesCS3B01G128100 chr1B 78.947 152 25 7 3704 3852 164835403 164835550 3.430000e-16 97.1
38 TraesCS3B01G128100 chrUn 98.462 130 2 0 2574 2703 191163434 191163305 3.250000e-56 230.0
39 TraesCS3B01G128100 chrUn 79.459 185 34 4 606 788 30120733 30120915 1.220000e-25 128.0
40 TraesCS3B01G128100 chr4D 95.683 139 4 2 2566 2704 344231972 344231836 5.430000e-54 222.0
41 TraesCS3B01G128100 chr7B 96.183 131 5 0 2572 2702 141907234 141907364 9.090000e-52 215.0
42 TraesCS3B01G128100 chr2B 78.652 267 36 9 3722 3970 413058551 413058288 1.550000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G128100 chr3B 106971110 106975283 4173 True 7709.00 7709 100.000000 1 4174 1 chr3B.!!$R1 4173
1 TraesCS3B01G128100 chr3D 64474936 64478683 3747 True 978.46 3753 91.528800 2 4150 5 chr3D.!!$R3 4148
2 TraesCS3B01G128100 chr3A 75028181 75032117 3936 True 1661.00 3609 92.967333 1 3793 3 chr3A.!!$R1 3792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 1272 0.324943 ACTTGGAGTGCATACCGCTT 59.675 50.0 0.0 0.0 43.06 4.68 F
2590 2895 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.0 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2682 2987 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.0 0.0 0.0 0.0 3.46 R
3664 4011 0.035739 GCAGAAGGTTTACGGGTCCA 59.964 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 425 1.043116 CAGACCGGATCCACTAGCCA 61.043 60.000 9.46 0.00 30.83 4.75
301 587 7.714377 TGCCACAAAAAGTATTTCATTGAATGT 59.286 29.630 4.93 0.00 37.28 2.71
302 588 9.202273 GCCACAAAAAGTATTTCATTGAATGTA 57.798 29.630 4.93 0.00 37.28 2.29
407 693 2.034558 ACATGAAAAACGAAGTGGCCTG 59.965 45.455 3.32 0.00 45.00 4.85
430 716 6.399013 TGGTATAAGGGAATGAAGGGAGTAT 58.601 40.000 0.00 0.00 0.00 2.12
454 740 8.950208 ATTAGTATTTTAGACTCAAGCCAGAC 57.050 34.615 0.00 0.00 0.00 3.51
481 767 9.730420 CACTAGCCACCAATTATTTAATGTAAC 57.270 33.333 0.00 0.00 0.00 2.50
569 858 1.868713 TTAGGTCGCCATGGAAGGTA 58.131 50.000 18.40 0.00 0.00 3.08
610 899 4.803426 GCAGACTCCTCCGCCACG 62.803 72.222 0.00 0.00 0.00 4.94
801 1090 0.813184 TTCTACATCGACACCGGGAC 59.187 55.000 6.32 0.00 36.24 4.46
894 1183 2.034687 GGACACCTGGCAGTGCAT 59.965 61.111 18.61 0.00 41.67 3.96
983 1272 0.324943 ACTTGGAGTGCATACCGCTT 59.675 50.000 0.00 0.00 43.06 4.68
1009 1305 2.034432 CCTGAGAGAGACATGATGACCG 59.966 54.545 0.00 0.00 0.00 4.79
1013 1309 2.028130 GAGAGACATGATGACCGTCCT 58.972 52.381 0.00 0.00 0.00 3.85
1125 1421 7.378966 ACTTTTATGTTCTGATCGAGTCTTCA 58.621 34.615 0.00 0.00 0.00 3.02
1170 1466 5.333339 GGTGCGAGTATATATGTTGCAACAG 60.333 44.000 33.44 19.16 43.04 3.16
1243 1539 2.765689 ATGGGACCCAAAACTTGTGA 57.234 45.000 19.58 0.00 36.95 3.58
1269 1565 9.607988 ATGGTCGACAGTAAAATTTATATCACA 57.392 29.630 18.91 0.00 0.00 3.58
1338 1634 3.686726 GCTCTACAATTTGTCTCCCACAG 59.313 47.826 5.07 0.00 35.97 3.66
1575 1871 4.003788 CAGGTCGGGGACAACGCT 62.004 66.667 0.00 0.00 33.68 5.07
1670 1966 9.995003 AGTGTATGAGATGAAAGATAAGGATTC 57.005 33.333 0.00 0.00 0.00 2.52
1695 1991 8.938906 TCGTATTCGGCTTATTATATTTTTCCC 58.061 33.333 0.00 0.00 37.69 3.97
1778 2074 6.461509 CCTTTTGCTTCTGTTGAGGTTACAAT 60.462 38.462 0.00 0.00 32.36 2.71
1795 2091 8.313292 AGGTTACAATGATTTACAATGTGCATT 58.687 29.630 0.00 0.00 41.87 3.56
1812 2108 5.976534 TGTGCATTGTGTGTGTAAATTTCTC 59.023 36.000 0.00 0.00 0.00 2.87
1881 2177 5.679601 TGTAGCATTGCTAATACACCATCA 58.320 37.500 19.55 7.69 43.07 3.07
1899 2195 7.915397 ACACCATCATAATCGAGTAAATTTTGC 59.085 33.333 0.00 0.00 0.00 3.68
1900 2196 8.131100 CACCATCATAATCGAGTAAATTTTGCT 58.869 33.333 0.00 0.00 0.00 3.91
1901 2197 9.337396 ACCATCATAATCGAGTAAATTTTGCTA 57.663 29.630 0.00 0.00 0.00 3.49
1928 2229 1.401931 GCTGCATTTGTGATGCTTCGT 60.402 47.619 11.72 0.00 44.79 3.85
1975 2276 5.412594 CCATCACACTGTTTGCTATAACTGT 59.587 40.000 0.00 0.00 39.72 3.55
2020 2321 2.589798 TTCGTTAGGCCATTCTACGG 57.410 50.000 5.01 0.00 0.00 4.02
2041 2342 5.986135 ACGGATACTAGTTCAGCATCATTTC 59.014 40.000 0.00 0.00 29.56 2.17
2096 2398 4.240096 CCACAATCTGAAAAGCAATGTCC 58.760 43.478 0.00 0.00 0.00 4.02
2127 2431 1.058284 ATGTTGTGCCAATTGCCCTT 58.942 45.000 0.00 0.00 40.16 3.95
2137 2441 2.736192 CCAATTGCCCTTTAACTTTGCG 59.264 45.455 0.00 0.00 0.00 4.85
2316 2621 8.961092 CATTTTGTTGTATCACTGTTTTCTGAG 58.039 33.333 0.00 0.00 0.00 3.35
2322 2627 5.926542 TGTATCACTGTTTTCTGAGCTACAC 59.073 40.000 0.00 0.00 0.00 2.90
2390 2695 1.137086 GCTTCCTAGCCTCGTCATCAA 59.863 52.381 0.00 0.00 41.74 2.57
2391 2696 2.815478 CTTCCTAGCCTCGTCATCAAC 58.185 52.381 0.00 0.00 0.00 3.18
2392 2697 2.145397 TCCTAGCCTCGTCATCAACT 57.855 50.000 0.00 0.00 0.00 3.16
2393 2698 2.025155 TCCTAGCCTCGTCATCAACTC 58.975 52.381 0.00 0.00 0.00 3.01
2394 2699 1.751351 CCTAGCCTCGTCATCAACTCA 59.249 52.381 0.00 0.00 0.00 3.41
2395 2700 2.363680 CCTAGCCTCGTCATCAACTCAT 59.636 50.000 0.00 0.00 0.00 2.90
2396 2701 2.593346 AGCCTCGTCATCAACTCATC 57.407 50.000 0.00 0.00 0.00 2.92
2397 2702 1.827344 AGCCTCGTCATCAACTCATCA 59.173 47.619 0.00 0.00 0.00 3.07
2418 2723 9.460019 TCATCATGTTGACCATTGTATTTTCTA 57.540 29.630 2.22 0.00 0.00 2.10
2525 2830 2.353406 GGTCGTGGCTTAGCTTCTTACA 60.353 50.000 3.59 0.00 0.00 2.41
2526 2831 2.924290 GTCGTGGCTTAGCTTCTTACAG 59.076 50.000 3.59 0.00 0.00 2.74
2527 2832 2.561419 TCGTGGCTTAGCTTCTTACAGT 59.439 45.455 3.59 0.00 0.00 3.55
2528 2833 3.760151 TCGTGGCTTAGCTTCTTACAGTA 59.240 43.478 3.59 0.00 0.00 2.74
2529 2834 3.858238 CGTGGCTTAGCTTCTTACAGTAC 59.142 47.826 3.59 0.00 0.00 2.73
2546 2851 4.532521 ACAGTACATCTGAAGCTTACCCTT 59.467 41.667 0.00 0.00 46.27 3.95
2547 2852 5.720041 ACAGTACATCTGAAGCTTACCCTTA 59.280 40.000 0.00 0.00 46.27 2.69
2579 2884 9.694137 GTTATGTATGAGATTGTTAGTACTCCC 57.306 37.037 0.00 0.00 0.00 4.30
2580 2885 9.656323 TTATGTATGAGATTGTTAGTACTCCCT 57.344 33.333 0.00 0.00 0.00 4.20
2581 2886 7.584122 TGTATGAGATTGTTAGTACTCCCTC 57.416 40.000 0.00 0.00 0.00 4.30
2582 2887 6.550108 TGTATGAGATTGTTAGTACTCCCTCC 59.450 42.308 0.00 0.00 0.00 4.30
2583 2888 3.952323 TGAGATTGTTAGTACTCCCTCCG 59.048 47.826 0.00 0.00 0.00 4.63
2584 2889 3.952967 GAGATTGTTAGTACTCCCTCCGT 59.047 47.826 0.00 0.00 0.00 4.69
2585 2890 3.952967 AGATTGTTAGTACTCCCTCCGTC 59.047 47.826 0.00 0.00 0.00 4.79
2586 2891 2.134789 TGTTAGTACTCCCTCCGTCC 57.865 55.000 0.00 0.00 0.00 4.79
2587 2892 1.020437 GTTAGTACTCCCTCCGTCCG 58.980 60.000 0.00 0.00 0.00 4.79
2588 2893 0.911769 TTAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
2589 2894 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
2590 2895 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2591 2896 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2592 2897 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2593 2898 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2594 2899 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2595 2900 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2596 2901 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2597 2902 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2598 2903 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2599 2904 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2600 2905 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2601 2906 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2602 2907 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2603 2908 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2604 2909 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2605 2910 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2606 2911 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2607 2912 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2608 2913 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2609 2914 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
2610 2915 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
2611 2916 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
2619 2924 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
2620 2925 6.405538 TGTCATCAAAATGAATAAAAGGGGC 58.594 36.000 0.00 0.00 43.42 5.80
2621 2926 6.213195 TGTCATCAAAATGAATAAAAGGGGCT 59.787 34.615 0.00 0.00 43.42 5.19
2622 2927 6.536224 GTCATCAAAATGAATAAAAGGGGCTG 59.464 38.462 0.00 0.00 43.42 4.85
2623 2928 6.213195 TCATCAAAATGAATAAAAGGGGCTGT 59.787 34.615 0.00 0.00 38.97 4.40
2624 2929 7.398618 TCATCAAAATGAATAAAAGGGGCTGTA 59.601 33.333 0.00 0.00 38.97 2.74
2625 2930 7.732222 TCAAAATGAATAAAAGGGGCTGTAT 57.268 32.000 0.00 0.00 0.00 2.29
2626 2931 7.781056 TCAAAATGAATAAAAGGGGCTGTATC 58.219 34.615 0.00 0.00 0.00 2.24
2627 2932 7.619302 TCAAAATGAATAAAAGGGGCTGTATCT 59.381 33.333 0.00 0.00 0.00 1.98
2628 2933 8.912988 CAAAATGAATAAAAGGGGCTGTATCTA 58.087 33.333 0.00 0.00 0.00 1.98
2629 2934 8.697507 AAATGAATAAAAGGGGCTGTATCTAG 57.302 34.615 0.00 0.00 0.00 2.43
2630 2935 7.633018 ATGAATAAAAGGGGCTGTATCTAGA 57.367 36.000 0.00 0.00 0.00 2.43
2631 2936 7.633018 TGAATAAAAGGGGCTGTATCTAGAT 57.367 36.000 10.73 10.73 0.00 1.98
2632 2937 7.453393 TGAATAAAAGGGGCTGTATCTAGATG 58.547 38.462 15.79 0.00 0.00 2.90
2633 2938 7.072454 TGAATAAAAGGGGCTGTATCTAGATGT 59.928 37.037 15.79 0.00 0.00 3.06
2634 2939 8.506196 AATAAAAGGGGCTGTATCTAGATGTA 57.494 34.615 15.79 3.25 0.00 2.29
2635 2940 8.686739 ATAAAAGGGGCTGTATCTAGATGTAT 57.313 34.615 15.79 0.00 0.00 2.29
2636 2941 7.394144 AAAAGGGGCTGTATCTAGATGTATT 57.606 36.000 15.79 0.00 0.00 1.89
2637 2942 7.394144 AAAGGGGCTGTATCTAGATGTATTT 57.606 36.000 15.79 2.90 0.00 1.40
2638 2943 7.394144 AAGGGGCTGTATCTAGATGTATTTT 57.606 36.000 15.79 0.00 0.00 1.82
2639 2944 8.506196 AAGGGGCTGTATCTAGATGTATTTTA 57.494 34.615 15.79 0.00 0.00 1.52
2640 2945 8.140112 AGGGGCTGTATCTAGATGTATTTTAG 57.860 38.462 15.79 4.40 0.00 1.85
2641 2946 7.735321 AGGGGCTGTATCTAGATGTATTTTAGT 59.265 37.037 15.79 0.00 0.00 2.24
2642 2947 8.376270 GGGGCTGTATCTAGATGTATTTTAGTT 58.624 37.037 15.79 0.00 0.00 2.24
2643 2948 9.425577 GGGCTGTATCTAGATGTATTTTAGTTC 57.574 37.037 15.79 1.57 0.00 3.01
2665 2970 8.816894 AGTTCTAGATACATCTCTTTTTGTCCA 58.183 33.333 0.00 0.00 38.32 4.02
2666 2971 9.606631 GTTCTAGATACATCTCTTTTTGTCCAT 57.393 33.333 0.00 0.00 38.32 3.41
2671 2976 9.300681 AGATACATCTCTTTTTGTCCATTTTGA 57.699 29.630 0.00 0.00 29.30 2.69
2673 2978 9.865321 ATACATCTCTTTTTGTCCATTTTGATG 57.135 29.630 0.00 0.00 35.23 3.07
2674 2979 7.954835 ACATCTCTTTTTGTCCATTTTGATGA 58.045 30.769 0.00 0.00 33.85 2.92
2675 2980 7.869429 ACATCTCTTTTTGTCCATTTTGATGAC 59.131 33.333 0.00 0.00 33.85 3.06
2676 2981 7.345422 TCTCTTTTTGTCCATTTTGATGACA 57.655 32.000 0.00 0.00 0.00 3.58
2677 2982 7.780064 TCTCTTTTTGTCCATTTTGATGACAA 58.220 30.769 0.00 0.00 34.47 3.18
2678 2983 7.922278 TCTCTTTTTGTCCATTTTGATGACAAG 59.078 33.333 0.00 0.00 37.13 3.16
2679 2984 7.555087 TCTTTTTGTCCATTTTGATGACAAGT 58.445 30.769 0.00 0.00 37.13 3.16
2680 2985 8.690884 TCTTTTTGTCCATTTTGATGACAAGTA 58.309 29.630 0.00 0.00 37.13 2.24
2681 2986 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
2682 2987 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
2683 2988 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
2684 2989 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
2685 2990 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
2686 2991 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
2687 2992 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
2688 2993 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2689 2994 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2690 2995 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2691 2996 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2692 2997 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2693 2998 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2694 2999 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2695 3000 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2696 3001 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2697 3002 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2715 3020 6.183360 GGAGGGAGTACTTGGGTTTATCTAAG 60.183 46.154 0.00 0.00 0.00 2.18
2742 3047 7.475015 TCTGATTTTACTATGTTGAAGCATGC 58.525 34.615 10.51 10.51 0.00 4.06
2756 3061 1.674441 AGCATGCGATTGGTTGATCAG 59.326 47.619 13.01 0.00 0.00 2.90
2797 3102 7.724305 ATATGTTACATCCGTATGGTTGAAC 57.276 36.000 17.29 15.48 38.19 3.18
2824 3129 5.233225 TGCATGAGTTCTGATTCCGATATC 58.767 41.667 0.00 0.00 0.00 1.63
2839 3144 8.657074 ATTCCGATATCTCACAACGAATTTTA 57.343 30.769 0.34 0.00 0.00 1.52
2870 3175 8.864069 ATATGACAGAAGTGACTAATTCGAAG 57.136 34.615 3.35 0.00 36.10 3.79
3129 3467 2.358898 TGACCTTGCTCAGTTTTGCTTC 59.641 45.455 0.00 0.00 0.00 3.86
3174 3512 4.958509 ACAATATCATCCAGCTCAGTGAG 58.041 43.478 16.21 16.21 0.00 3.51
3217 3555 4.751767 AAAGAAAATTTGTCTGTGGGCA 57.248 36.364 0.00 0.00 0.00 5.36
3251 3589 4.351054 CCAAACCCTGCGAGGCCT 62.351 66.667 3.86 3.86 32.73 5.19
3261 3599 1.203523 CTGCGAGGCCTCCTGTATATC 59.796 57.143 27.20 0.00 31.76 1.63
3355 3693 3.352611 ACCAAGCATATCTAGAGGGGT 57.647 47.619 0.00 0.00 0.00 4.95
3356 3694 2.975489 ACCAAGCATATCTAGAGGGGTG 59.025 50.000 0.00 0.00 0.00 4.61
3357 3695 2.289945 CCAAGCATATCTAGAGGGGTGC 60.290 54.545 11.35 11.35 0.00 5.01
3358 3696 2.369860 CAAGCATATCTAGAGGGGTGCA 59.630 50.000 17.93 0.00 35.17 4.57
3359 3697 2.694397 AGCATATCTAGAGGGGTGCAA 58.306 47.619 17.93 0.00 35.17 4.08
3360 3698 3.048600 AGCATATCTAGAGGGGTGCAAA 58.951 45.455 17.93 0.00 35.17 3.68
3361 3699 3.072184 AGCATATCTAGAGGGGTGCAAAG 59.928 47.826 17.93 0.00 35.17 2.77
3362 3700 3.406764 CATATCTAGAGGGGTGCAAAGC 58.593 50.000 0.00 0.00 0.00 3.51
3363 3701 1.589414 ATCTAGAGGGGTGCAAAGCT 58.411 50.000 0.00 0.00 0.00 3.74
3364 3702 0.615331 TCTAGAGGGGTGCAAAGCTG 59.385 55.000 0.00 0.00 0.00 4.24
3365 3703 0.326264 CTAGAGGGGTGCAAAGCTGT 59.674 55.000 0.00 0.00 0.00 4.40
3366 3704 0.036732 TAGAGGGGTGCAAAGCTGTG 59.963 55.000 0.00 0.00 0.00 3.66
3367 3705 1.228245 GAGGGGTGCAAAGCTGTGA 60.228 57.895 8.49 0.00 0.00 3.58
3368 3706 0.823356 GAGGGGTGCAAAGCTGTGAA 60.823 55.000 8.49 0.00 0.00 3.18
3369 3707 0.178953 AGGGGTGCAAAGCTGTGAAT 60.179 50.000 8.49 0.00 0.00 2.57
3370 3708 1.075374 AGGGGTGCAAAGCTGTGAATA 59.925 47.619 8.49 0.00 0.00 1.75
3371 3709 2.102578 GGGGTGCAAAGCTGTGAATAT 58.897 47.619 8.49 0.00 0.00 1.28
3372 3710 2.497273 GGGGTGCAAAGCTGTGAATATT 59.503 45.455 8.49 0.00 0.00 1.28
3373 3711 3.055891 GGGGTGCAAAGCTGTGAATATTT 60.056 43.478 8.49 0.00 0.00 1.40
3374 3712 4.176271 GGGTGCAAAGCTGTGAATATTTC 58.824 43.478 8.49 0.00 0.00 2.17
3375 3713 4.321899 GGGTGCAAAGCTGTGAATATTTCA 60.322 41.667 8.49 0.00 37.33 2.69
3401 3739 0.512952 CCTTGTGTTGCGTAGACTGC 59.487 55.000 0.00 0.00 0.00 4.40
3444 3790 8.856490 AAAGTTTGTCAGTCATTGTGAAATAC 57.144 30.769 0.00 0.00 0.00 1.89
3445 3791 6.658831 AGTTTGTCAGTCATTGTGAAATACG 58.341 36.000 0.00 0.00 0.00 3.06
3446 3792 6.260050 AGTTTGTCAGTCATTGTGAAATACGT 59.740 34.615 0.00 0.00 0.00 3.57
3447 3793 7.439955 AGTTTGTCAGTCATTGTGAAATACGTA 59.560 33.333 0.00 0.00 0.00 3.57
3459 3805 7.783090 TGTGAAATACGTAGGTTTTTGTGTA 57.217 32.000 8.42 0.00 29.19 2.90
3497 3843 2.084546 GTGAAATGGCTCCAGGTACAC 58.915 52.381 0.00 0.00 0.00 2.90
3503 3849 0.983378 GGCTCCAGGTACACATCCCT 60.983 60.000 0.00 0.00 0.00 4.20
3534 3880 9.535270 GATGAAAAGAAGAGACATTTAGAAACG 57.465 33.333 0.00 0.00 0.00 3.60
3539 3885 4.537135 AGAGACATTTAGAAACGCCTGA 57.463 40.909 0.00 0.00 0.00 3.86
3594 3940 6.643770 CCAGGATGAAAAGAACAAGACATTTG 59.356 38.462 0.00 0.00 39.69 2.32
3626 3973 7.174253 GCCTCCGGAATGTTCATGTATTTTATA 59.826 37.037 5.23 0.00 0.00 0.98
3672 4019 1.068585 GTCTTCAACGTGGACCCGT 59.931 57.895 0.00 2.57 44.23 5.28
3681 4028 0.319405 CGTGGACCCGTAAACCTTCT 59.681 55.000 0.00 0.00 0.00 2.85
3683 4030 0.035739 TGGACCCGTAAACCTTCTGC 59.964 55.000 0.00 0.00 0.00 4.26
3687 4034 1.006832 CCCGTAAACCTTCTGCATCG 58.993 55.000 0.00 0.00 0.00 3.84
3693 4040 2.202932 CCTTCTGCATCGGTCCGG 60.203 66.667 12.29 0.00 0.00 5.14
3694 4041 2.579201 CTTCTGCATCGGTCCGGT 59.421 61.111 12.29 0.00 0.00 5.28
3696 4043 1.949847 CTTCTGCATCGGTCCGGTCT 61.950 60.000 12.29 0.00 0.00 3.85
3697 4044 2.202797 CTGCATCGGTCCGGTCTG 60.203 66.667 12.29 0.00 0.00 3.51
3698 4045 4.451150 TGCATCGGTCCGGTCTGC 62.451 66.667 20.52 20.52 0.00 4.26
3700 4047 4.873129 CATCGGTCCGGTCTGCGG 62.873 72.222 12.29 0.00 0.00 5.69
3743 4099 0.660300 CGCGTTTTCTCCTGCAAACC 60.660 55.000 0.00 0.00 30.37 3.27
3744 4100 0.383949 GCGTTTTCTCCTGCAAACCA 59.616 50.000 0.00 0.00 30.37 3.67
3754 4110 1.002468 CCTGCAAACCAGAGACAAACG 60.002 52.381 0.00 0.00 44.64 3.60
3759 4115 0.179029 AACCAGAGACAAACGTGGGG 60.179 55.000 0.00 0.00 33.59 4.96
3793 4149 2.573869 CGGACTGATGTCACGCCT 59.426 61.111 0.00 0.00 44.61 5.52
3794 4150 1.807165 CGGACTGATGTCACGCCTG 60.807 63.158 0.00 0.00 44.61 4.85
3795 4151 2.103042 GGACTGATGTCACGCCTGC 61.103 63.158 0.00 0.00 44.61 4.85
3796 4152 1.079543 GACTGATGTCACGCCTGCT 60.080 57.895 0.00 0.00 42.48 4.24
3797 4153 0.671781 GACTGATGTCACGCCTGCTT 60.672 55.000 0.00 0.00 42.48 3.91
3799 4155 0.390866 CTGATGTCACGCCTGCTTCT 60.391 55.000 0.00 0.00 0.00 2.85
3800 4156 0.671472 TGATGTCACGCCTGCTTCTG 60.671 55.000 0.00 0.00 0.00 3.02
3801 4157 0.390340 GATGTCACGCCTGCTTCTGA 60.390 55.000 0.00 0.00 0.00 3.27
3803 4159 2.029844 GTCACGCCTGCTTCTGACC 61.030 63.158 0.00 0.00 0.00 4.02
3804 4160 2.031012 CACGCCTGCTTCTGACCA 59.969 61.111 0.00 0.00 0.00 4.02
3805 4161 2.031163 ACGCCTGCTTCTGACCAC 59.969 61.111 0.00 0.00 0.00 4.16
3806 4162 2.743928 CGCCTGCTTCTGACCACC 60.744 66.667 0.00 0.00 0.00 4.61
3807 4163 2.753029 GCCTGCTTCTGACCACCT 59.247 61.111 0.00 0.00 0.00 4.00
3808 4164 1.073897 GCCTGCTTCTGACCACCTT 59.926 57.895 0.00 0.00 0.00 3.50
3809 4165 1.239968 GCCTGCTTCTGACCACCTTG 61.240 60.000 0.00 0.00 0.00 3.61
3810 4166 0.397941 CCTGCTTCTGACCACCTTGA 59.602 55.000 0.00 0.00 0.00 3.02
3811 4167 1.517242 CTGCTTCTGACCACCTTGAC 58.483 55.000 0.00 0.00 0.00 3.18
3812 4168 0.108585 TGCTTCTGACCACCTTGACC 59.891 55.000 0.00 0.00 0.00 4.02
3813 4169 0.606673 GCTTCTGACCACCTTGACCC 60.607 60.000 0.00 0.00 0.00 4.46
3814 4170 0.764890 CTTCTGACCACCTTGACCCA 59.235 55.000 0.00 0.00 0.00 4.51
3815 4171 1.352352 CTTCTGACCACCTTGACCCAT 59.648 52.381 0.00 0.00 0.00 4.00
3816 4172 0.984230 TCTGACCACCTTGACCCATC 59.016 55.000 0.00 0.00 0.00 3.51
3821 4177 2.962421 GACCACCTTGACCCATCAAAAA 59.038 45.455 0.00 0.00 44.28 1.94
3836 4192 1.463375 AAAAACCTTCCCCCTCCCG 59.537 57.895 0.00 0.00 0.00 5.14
3837 4193 1.365894 AAAAACCTTCCCCCTCCCGT 61.366 55.000 0.00 0.00 0.00 5.28
3838 4194 1.786407 AAAACCTTCCCCCTCCCGTC 61.786 60.000 0.00 0.00 0.00 4.79
3843 4216 3.612115 TTCCCCCTCCCGTCGTCAT 62.612 63.158 0.00 0.00 0.00 3.06
3855 4228 1.078497 TCGTCATCTGCCCGCATTT 60.078 52.632 0.00 0.00 0.00 2.32
3887 4260 4.794439 CGTGCCGCTCCACATCGA 62.794 66.667 0.00 0.00 35.47 3.59
3888 4261 2.434185 GTGCCGCTCCACATCGAA 60.434 61.111 0.00 0.00 35.80 3.71
3889 4262 2.125552 TGCCGCTCCACATCGAAG 60.126 61.111 0.00 0.00 0.00 3.79
3890 4263 2.892425 GCCGCTCCACATCGAAGG 60.892 66.667 0.00 0.00 0.00 3.46
3891 4264 2.892425 CCGCTCCACATCGAAGGC 60.892 66.667 0.00 0.00 0.00 4.35
3892 4265 2.125552 CGCTCCACATCGAAGGCA 60.126 61.111 0.00 0.00 0.00 4.75
3893 4266 2.169789 CGCTCCACATCGAAGGCAG 61.170 63.158 0.00 0.00 0.00 4.85
3894 4267 2.467826 GCTCCACATCGAAGGCAGC 61.468 63.158 0.00 0.35 0.00 5.25
3895 4268 1.220206 CTCCACATCGAAGGCAGCT 59.780 57.895 0.00 0.00 0.00 4.24
3896 4269 0.809241 CTCCACATCGAAGGCAGCTC 60.809 60.000 0.00 0.00 0.00 4.09
3897 4270 1.078918 CCACATCGAAGGCAGCTCA 60.079 57.895 0.00 0.00 0.00 4.26
3898 4271 1.088340 CCACATCGAAGGCAGCTCAG 61.088 60.000 0.00 0.00 0.00 3.35
3899 4272 1.088340 CACATCGAAGGCAGCTCAGG 61.088 60.000 0.00 0.00 0.00 3.86
3900 4273 1.523258 CATCGAAGGCAGCTCAGGG 60.523 63.158 0.00 0.00 0.00 4.45
3901 4274 3.397613 ATCGAAGGCAGCTCAGGGC 62.398 63.158 0.00 0.00 42.19 5.19
3917 4290 3.173240 GCGGACGCGACTTCTCAC 61.173 66.667 15.93 0.00 0.00 3.51
3921 4294 2.049063 ACGCGACTTCTCACTGCC 60.049 61.111 15.93 0.00 0.00 4.85
3925 4298 1.153939 CGACTTCTCACTGCCTCCG 60.154 63.158 0.00 0.00 0.00 4.63
3935 4308 1.377725 CTGCCTCCGCCATTGAAGT 60.378 57.895 0.00 0.00 0.00 3.01
3937 4310 2.409870 GCCTCCGCCATTGAAGTGG 61.410 63.158 0.00 0.00 42.35 4.00
3981 4354 3.345808 GCACGCTCGGCTGAACAA 61.346 61.111 0.00 0.00 0.00 2.83
3992 4365 2.093216 CTGAACAAGCCTCATCGCC 58.907 57.895 0.00 0.00 0.00 5.54
3993 4366 1.699656 CTGAACAAGCCTCATCGCCG 61.700 60.000 0.00 0.00 0.00 6.46
3994 4367 3.100862 GAACAAGCCTCATCGCCGC 62.101 63.158 0.00 0.00 0.00 6.53
3995 4368 3.899981 AACAAGCCTCATCGCCGCA 62.900 57.895 0.00 0.00 0.00 5.69
3996 4369 2.898840 CAAGCCTCATCGCCGCAT 60.899 61.111 0.00 0.00 0.00 4.73
3997 4370 2.124570 AAGCCTCATCGCCGCATT 60.125 55.556 0.00 0.00 0.00 3.56
3998 4371 2.182842 AAGCCTCATCGCCGCATTC 61.183 57.895 0.00 0.00 0.00 2.67
3999 4372 2.874648 AAGCCTCATCGCCGCATTCA 62.875 55.000 0.00 0.00 0.00 2.57
4000 4373 2.472059 GCCTCATCGCCGCATTCAA 61.472 57.895 0.00 0.00 0.00 2.69
4001 4374 1.992233 GCCTCATCGCCGCATTCAAA 61.992 55.000 0.00 0.00 0.00 2.69
4002 4375 0.248215 CCTCATCGCCGCATTCAAAC 60.248 55.000 0.00 0.00 0.00 2.93
4003 4376 0.447406 CTCATCGCCGCATTCAAACA 59.553 50.000 0.00 0.00 0.00 2.83
4004 4377 0.447406 TCATCGCCGCATTCAAACAG 59.553 50.000 0.00 0.00 0.00 3.16
4007 4380 1.512734 CGCCGCATTCAAACAGCTC 60.513 57.895 0.00 0.00 0.00 4.09
4015 4388 5.104374 CGCATTCAAACAGCTCCATTAAAT 58.896 37.500 0.00 0.00 0.00 1.40
4017 4390 5.521372 GCATTCAAACAGCTCCATTAAATCC 59.479 40.000 0.00 0.00 0.00 3.01
4035 4408 1.021390 CCGCGTGGAAGCTGAGAAAT 61.021 55.000 10.20 0.00 37.49 2.17
4042 4415 4.142271 CGTGGAAGCTGAGAAATCTACTCT 60.142 45.833 0.00 0.00 35.66 3.24
4043 4416 5.066634 CGTGGAAGCTGAGAAATCTACTCTA 59.933 44.000 0.00 0.00 35.66 2.43
4053 4426 4.096682 AGAAATCTACTCTAGCCACACGTC 59.903 45.833 0.00 0.00 0.00 4.34
4055 4428 0.377554 CTACTCTAGCCACACGTCCG 59.622 60.000 0.00 0.00 0.00 4.79
4058 4431 0.038526 CTCTAGCCACACGTCCGTTT 60.039 55.000 0.00 0.00 0.00 3.60
4070 4443 4.745751 CCGTTTACGAGCGGGCCA 62.746 66.667 4.39 0.00 44.82 5.36
4071 4444 3.186047 CGTTTACGAGCGGGCCAG 61.186 66.667 4.39 0.00 43.02 4.85
4085 4458 1.070471 GGCCAGCATTAAACGCAACG 61.070 55.000 0.00 0.00 0.00 4.10
4086 4459 0.386731 GCCAGCATTAAACGCAACGT 60.387 50.000 3.39 0.00 43.97 3.99
4088 4461 1.238281 CAGCATTAAACGCAACGTCG 58.762 50.000 0.00 0.00 39.99 5.12
4090 4463 0.791610 GCATTAAACGCAACGTCGGG 60.792 55.000 0.00 0.00 39.99 5.14
4108 4481 3.036429 GCAAGCTCCTCCCATCCGT 62.036 63.158 0.00 0.00 0.00 4.69
4122 4495 4.056050 CCCATCCGTCCTCTATTTAAACG 58.944 47.826 0.00 0.00 0.00 3.60
4129 4502 5.404946 CGTCCTCTATTTAAACGAGGTCAA 58.595 41.667 24.13 10.95 43.73 3.18
4135 4508 1.950828 TTAAACGAGGTCAAACGCCA 58.049 45.000 0.00 0.00 0.00 5.69
4137 4510 1.164041 AAACGAGGTCAAACGCCAGG 61.164 55.000 0.00 0.00 0.00 4.45
4146 4519 0.454957 CAAACGCCAGGCAAGAATCG 60.455 55.000 13.30 0.00 0.00 3.34
4150 4523 3.056313 GCCAGGCAAGAATCGCACC 62.056 63.158 6.55 0.00 0.00 5.01
4151 4524 1.675310 CCAGGCAAGAATCGCACCA 60.675 57.895 0.00 0.00 0.00 4.17
4152 4525 1.503542 CAGGCAAGAATCGCACCAC 59.496 57.895 0.00 0.00 0.00 4.16
4153 4526 0.957395 CAGGCAAGAATCGCACCACT 60.957 55.000 0.00 0.00 0.00 4.00
4154 4527 0.674895 AGGCAAGAATCGCACCACTC 60.675 55.000 0.00 0.00 0.00 3.51
4155 4528 1.648467 GGCAAGAATCGCACCACTCC 61.648 60.000 0.00 0.00 0.00 3.85
4156 4529 1.970917 GCAAGAATCGCACCACTCCG 61.971 60.000 0.00 0.00 0.00 4.63
4157 4530 1.741770 AAGAATCGCACCACTCCGC 60.742 57.895 0.00 0.00 0.00 5.54
4158 4531 3.195698 GAATCGCACCACTCCGCC 61.196 66.667 0.00 0.00 0.00 6.13
4171 4544 4.918201 CCGCCGCTCCCCATCTTC 62.918 72.222 0.00 0.00 0.00 2.87
4172 4545 3.854669 CGCCGCTCCCCATCTTCT 61.855 66.667 0.00 0.00 0.00 2.85
4173 4546 2.110006 GCCGCTCCCCATCTTCTC 59.890 66.667 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 425 8.832735 TGGGACTAAAAGTCTAAAATACTCCAT 58.167 33.333 6.99 0.00 44.46 3.41
301 587 8.160521 TCATCGGAAAGTTCTTTGAAATGTTA 57.839 30.769 2.38 0.00 0.00 2.41
302 588 7.038154 TCATCGGAAAGTTCTTTGAAATGTT 57.962 32.000 2.38 0.00 0.00 2.71
379 665 6.491394 CCACTTCGTTTTTCATGTCAAACTA 58.509 36.000 15.74 6.73 31.75 2.24
389 675 1.028905 CCAGGCCACTTCGTTTTTCA 58.971 50.000 5.01 0.00 0.00 2.69
397 683 2.124411 TCCCTTATACCAGGCCACTTC 58.876 52.381 5.01 0.00 31.69 3.01
407 693 6.954352 ATACTCCCTTCATTCCCTTATACC 57.046 41.667 0.00 0.00 0.00 2.73
430 716 7.038587 TGGTCTGGCTTGAGTCTAAAATACTAA 60.039 37.037 0.00 0.00 0.00 2.24
454 740 7.346751 ACATTAAATAATTGGTGGCTAGTGG 57.653 36.000 0.00 0.00 0.00 4.00
481 767 9.325198 TGGCAGTACAGTATATTAATCAACAAG 57.675 33.333 0.00 0.00 0.00 3.16
495 781 2.812613 GCTGGGTTTTGGCAGTACAGTA 60.813 50.000 0.00 0.00 0.00 2.74
496 782 1.981256 CTGGGTTTTGGCAGTACAGT 58.019 50.000 0.00 0.00 0.00 3.55
497 783 0.598065 GCTGGGTTTTGGCAGTACAG 59.402 55.000 0.00 0.00 0.00 2.74
498 784 0.825840 GGCTGGGTTTTGGCAGTACA 60.826 55.000 0.00 0.00 0.00 2.90
499 785 1.532604 GGGCTGGGTTTTGGCAGTAC 61.533 60.000 0.00 0.00 0.00 2.73
569 858 3.357079 CGGTTGCGGCTGCTTCTT 61.357 61.111 20.27 0.00 43.34 2.52
744 1033 2.263540 GCAGCTTACGGAACCGGA 59.736 61.111 9.46 6.09 44.69 5.14
778 1067 0.172578 CGGTGTCGATGTAGAAGCCA 59.827 55.000 0.00 0.00 39.00 4.75
894 1183 3.129502 CGAGGACGTGAGCCCGTA 61.130 66.667 0.00 0.00 41.98 4.02
926 1215 4.036498 GTCTAGGAGCATAGTTAAGACGCA 59.964 45.833 0.00 0.00 0.00 5.24
983 1272 2.250924 TCATGTCTCTCTCAGGCACAA 58.749 47.619 0.00 0.00 40.47 3.33
1009 1305 6.060136 GGTTATACCTTGGAAATGGTAGGAC 58.940 44.000 0.00 0.00 41.46 3.85
1013 1309 4.686670 GCCGGTTATACCTTGGAAATGGTA 60.687 45.833 1.90 0.00 42.23 3.25
1170 1466 4.927782 TGTGTGCGCCAGACACCC 62.928 66.667 22.22 4.02 42.63 4.61
1180 1476 0.378257 GCCAAGGTATGATGTGTGCG 59.622 55.000 0.00 0.00 0.00 5.34
1243 1539 9.607988 TGTGATATAAATTTTACTGTCGACCAT 57.392 29.630 14.12 3.27 0.00 3.55
1269 1565 4.141251 ACCATAATATTTCTCGGGGCAACT 60.141 41.667 0.00 0.00 0.00 3.16
1338 1634 2.111972 TCTATCTCCATACTCCACCCCC 59.888 54.545 0.00 0.00 0.00 5.40
1670 1966 8.943002 AGGGAAAAATATAATAAGCCGAATACG 58.057 33.333 0.00 0.00 39.43 3.06
1695 1991 1.821136 GGAGGCCAAACCATCTTGAAG 59.179 52.381 5.01 0.00 43.14 3.02
1698 1994 2.806945 TAGGAGGCCAAACCATCTTG 57.193 50.000 5.01 0.00 43.14 3.02
1795 2091 8.918202 AAATAGAGGAGAAATTTACACACACA 57.082 30.769 0.00 0.00 0.00 3.72
1881 2177 8.451908 AAGCCTAGCAAAATTTACTCGATTAT 57.548 30.769 0.00 0.00 0.00 1.28
1895 2191 1.259609 ATGCAGCAAAGCCTAGCAAA 58.740 45.000 0.00 0.00 35.66 3.68
1899 2195 2.229543 TCACAAATGCAGCAAAGCCTAG 59.770 45.455 0.00 0.00 0.00 3.02
1900 2196 2.237643 TCACAAATGCAGCAAAGCCTA 58.762 42.857 0.00 0.00 0.00 3.93
1901 2197 1.042229 TCACAAATGCAGCAAAGCCT 58.958 45.000 0.00 0.00 0.00 4.58
1975 2276 1.140052 CACACACCTAACACCACTCCA 59.860 52.381 0.00 0.00 0.00 3.86
2020 2321 7.776933 TGTGAAATGATGCTGAACTAGTATC 57.223 36.000 0.00 0.00 45.52 2.24
2041 2342 7.728358 AAGAGCACTTAGAGCAACAGAATGTG 61.728 42.308 4.27 0.00 41.29 3.21
2122 2424 2.400399 GGAAACGCAAAGTTAAAGGGC 58.600 47.619 0.00 0.00 43.37 5.19
2127 2431 9.211485 GCTATATATAGGGAAACGCAAAGTTAA 57.789 33.333 19.19 0.00 43.37 2.01
2151 2455 6.565974 TGGAGAGATAGTATTAAGGATGGCT 58.434 40.000 0.00 0.00 0.00 4.75
2179 2483 6.649557 ACTGCTAGCTTCACTAAACGTAAAAT 59.350 34.615 17.23 0.00 0.00 1.82
2322 2627 4.071423 TGTACTTCCACACATGTCCAATG 58.929 43.478 0.00 0.00 0.00 2.82
2390 2695 7.707624 AAATACAATGGTCAACATGATGAGT 57.292 32.000 5.83 3.25 40.44 3.41
2391 2696 8.464404 AGAAAATACAATGGTCAACATGATGAG 58.536 33.333 5.83 0.00 40.44 2.90
2392 2697 8.352137 AGAAAATACAATGGTCAACATGATGA 57.648 30.769 0.83 0.83 40.44 2.92
2393 2698 9.726232 CTAGAAAATACAATGGTCAACATGATG 57.274 33.333 0.00 0.00 40.44 3.07
2394 2699 9.466497 ACTAGAAAATACAATGGTCAACATGAT 57.534 29.630 0.00 0.00 40.44 2.45
2395 2700 8.729756 CACTAGAAAATACAATGGTCAACATGA 58.270 33.333 0.00 0.00 40.44 3.07
2396 2701 7.485913 GCACTAGAAAATACAATGGTCAACATG 59.514 37.037 0.00 0.00 40.44 3.21
2397 2702 7.394359 AGCACTAGAAAATACAATGGTCAACAT 59.606 33.333 0.00 0.00 43.07 2.71
2418 2723 5.045578 AGGGTTGTGATAATAGTTCAGCACT 60.046 40.000 0.00 0.00 39.87 4.40
2525 2830 6.869206 TTAAGGGTAAGCTTCAGATGTACT 57.131 37.500 0.00 0.00 0.00 2.73
2526 2831 7.988028 AGATTTAAGGGTAAGCTTCAGATGTAC 59.012 37.037 0.00 0.00 0.00 2.90
2527 2832 7.987458 CAGATTTAAGGGTAAGCTTCAGATGTA 59.013 37.037 0.00 0.00 0.00 2.29
2528 2833 6.825721 CAGATTTAAGGGTAAGCTTCAGATGT 59.174 38.462 0.00 0.00 0.00 3.06
2529 2834 6.825721 ACAGATTTAAGGGTAAGCTTCAGATG 59.174 38.462 0.00 0.00 0.00 2.90
2575 2880 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2576 2881 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2577 2882 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2578 2883 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2579 2884 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2580 2885 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2581 2886 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2582 2887 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2583 2888 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
2584 2889 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
2585 2890 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
2593 2898 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
2594 2899 7.064966 GCCCCTTTTATTCATTTTGATGACAAG 59.935 37.037 0.00 0.00 37.32 3.16
2595 2900 6.878389 GCCCCTTTTATTCATTTTGATGACAA 59.122 34.615 0.00 0.00 0.00 3.18
2596 2901 6.213195 AGCCCCTTTTATTCATTTTGATGACA 59.787 34.615 0.00 0.00 0.00 3.58
2597 2902 6.536224 CAGCCCCTTTTATTCATTTTGATGAC 59.464 38.462 0.00 0.00 0.00 3.06
2598 2903 6.213195 ACAGCCCCTTTTATTCATTTTGATGA 59.787 34.615 0.00 0.00 0.00 2.92
2599 2904 6.408869 ACAGCCCCTTTTATTCATTTTGATG 58.591 36.000 0.00 0.00 0.00 3.07
2600 2905 6.625532 ACAGCCCCTTTTATTCATTTTGAT 57.374 33.333 0.00 0.00 0.00 2.57
2601 2906 7.619302 AGATACAGCCCCTTTTATTCATTTTGA 59.381 33.333 0.00 0.00 0.00 2.69
2602 2907 7.785033 AGATACAGCCCCTTTTATTCATTTTG 58.215 34.615 0.00 0.00 0.00 2.44
2603 2908 7.978099 AGATACAGCCCCTTTTATTCATTTT 57.022 32.000 0.00 0.00 0.00 1.82
2604 2909 8.502738 TCTAGATACAGCCCCTTTTATTCATTT 58.497 33.333 0.00 0.00 0.00 2.32
2605 2910 8.045720 TCTAGATACAGCCCCTTTTATTCATT 57.954 34.615 0.00 0.00 0.00 2.57
2606 2911 7.633018 TCTAGATACAGCCCCTTTTATTCAT 57.367 36.000 0.00 0.00 0.00 2.57
2607 2912 7.072454 ACATCTAGATACAGCCCCTTTTATTCA 59.928 37.037 4.54 0.00 0.00 2.57
2608 2913 7.454225 ACATCTAGATACAGCCCCTTTTATTC 58.546 38.462 4.54 0.00 0.00 1.75
2609 2914 7.394144 ACATCTAGATACAGCCCCTTTTATT 57.606 36.000 4.54 0.00 0.00 1.40
2610 2915 8.686739 ATACATCTAGATACAGCCCCTTTTAT 57.313 34.615 4.54 0.00 0.00 1.40
2611 2916 8.506196 AATACATCTAGATACAGCCCCTTTTA 57.494 34.615 4.54 0.00 0.00 1.52
2612 2917 7.394144 AATACATCTAGATACAGCCCCTTTT 57.606 36.000 4.54 0.00 0.00 2.27
2613 2918 7.394144 AAATACATCTAGATACAGCCCCTTT 57.606 36.000 4.54 0.00 0.00 3.11
2614 2919 7.394144 AAAATACATCTAGATACAGCCCCTT 57.606 36.000 4.54 0.00 0.00 3.95
2615 2920 7.735321 ACTAAAATACATCTAGATACAGCCCCT 59.265 37.037 4.54 0.00 0.00 4.79
2616 2921 7.908453 ACTAAAATACATCTAGATACAGCCCC 58.092 38.462 4.54 0.00 0.00 5.80
2617 2922 9.425577 GAACTAAAATACATCTAGATACAGCCC 57.574 37.037 4.54 0.00 0.00 5.19
2639 2944 8.816894 TGGACAAAAAGAGATGTATCTAGAACT 58.183 33.333 0.00 0.00 37.25 3.01
2640 2945 9.606631 ATGGACAAAAAGAGATGTATCTAGAAC 57.393 33.333 0.00 0.00 37.25 3.01
2645 2950 9.300681 TCAAAATGGACAAAAAGAGATGTATCT 57.699 29.630 0.00 0.00 40.50 1.98
2647 2952 9.865321 CATCAAAATGGACAAAAAGAGATGTAT 57.135 29.630 0.00 0.00 0.00 2.29
2648 2953 9.076781 TCATCAAAATGGACAAAAAGAGATGTA 57.923 29.630 0.00 0.00 33.42 2.29
2649 2954 7.869429 GTCATCAAAATGGACAAAAAGAGATGT 59.131 33.333 0.00 0.00 33.42 3.06
2650 2955 7.868922 TGTCATCAAAATGGACAAAAAGAGATG 59.131 33.333 0.00 0.00 33.42 2.90
2651 2956 7.954835 TGTCATCAAAATGGACAAAAAGAGAT 58.045 30.769 0.00 0.00 33.42 2.75
2652 2957 7.345422 TGTCATCAAAATGGACAAAAAGAGA 57.655 32.000 0.00 0.00 33.42 3.10
2653 2958 7.707893 ACTTGTCATCAAAATGGACAAAAAGAG 59.292 33.333 7.70 0.00 34.98 2.85
2654 2959 7.555087 ACTTGTCATCAAAATGGACAAAAAGA 58.445 30.769 7.70 0.00 34.98 2.52
2655 2960 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
2656 2961 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
2657 2962 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
2658 2963 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
2659 2964 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
2660 2965 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
2661 2966 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
2662 2967 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2663 2968 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2664 2969 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2665 2970 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2666 2971 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2667 2972 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2668 2973 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2669 2974 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2670 2975 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2671 2976 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2672 2977 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2673 2978 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2674 2979 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2675 2980 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2676 2981 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2677 2982 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2678 2983 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2679 2984 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2680 2985 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2681 2986 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2682 2987 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2683 2988 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
2684 2989 0.679002 CAAGTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
2685 2990 1.664321 CCAAGTACTCCCTCCGTCCG 61.664 65.000 0.00 0.00 0.00 4.79
2686 2991 1.328430 CCCAAGTACTCCCTCCGTCC 61.328 65.000 0.00 0.00 0.00 4.79
2687 2992 0.614134 ACCCAAGTACTCCCTCCGTC 60.614 60.000 0.00 0.00 0.00 4.79
2688 2993 0.178912 AACCCAAGTACTCCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
2689 2994 0.981943 AAACCCAAGTACTCCCTCCG 59.018 55.000 0.00 0.00 0.00 4.63
2690 2995 4.038633 AGATAAACCCAAGTACTCCCTCC 58.961 47.826 0.00 0.00 0.00 4.30
2691 2996 6.383436 ACTTAGATAAACCCAAGTACTCCCTC 59.617 42.308 0.00 0.00 29.67 4.30
2692 2997 6.269974 ACTTAGATAAACCCAAGTACTCCCT 58.730 40.000 0.00 0.00 29.67 4.20
2693 2998 6.556974 ACTTAGATAAACCCAAGTACTCCC 57.443 41.667 0.00 0.00 29.67 4.30
2694 2999 7.764901 CAGAACTTAGATAAACCCAAGTACTCC 59.235 40.741 0.00 0.00 31.20 3.85
2695 3000 8.529476 TCAGAACTTAGATAAACCCAAGTACTC 58.471 37.037 0.00 0.00 31.20 2.59
2696 3001 8.431910 TCAGAACTTAGATAAACCCAAGTACT 57.568 34.615 0.00 0.00 31.20 2.73
2697 3002 9.668497 AATCAGAACTTAGATAAACCCAAGTAC 57.332 33.333 0.00 0.00 31.20 2.73
2715 3020 9.282247 CATGCTTCAACATAGTAAAATCAGAAC 57.718 33.333 0.00 0.00 0.00 3.01
2772 3077 7.227910 GGTTCAACCATACGGATGTAACATATT 59.772 37.037 6.92 0.00 38.42 1.28
2782 3087 3.135712 TGCATAGGTTCAACCATACGGAT 59.864 43.478 9.90 0.00 41.95 4.18
2785 3090 4.126437 TCATGCATAGGTTCAACCATACG 58.874 43.478 9.90 0.00 41.95 3.06
2788 3093 4.240881 ACTCATGCATAGGTTCAACCAT 57.759 40.909 9.90 0.00 41.95 3.55
2797 3102 3.744942 CGGAATCAGAACTCATGCATAGG 59.255 47.826 0.00 0.00 0.00 2.57
2870 3175 5.705609 TCAGAGTCCAATAAAAACAAGCC 57.294 39.130 0.00 0.00 0.00 4.35
2925 3255 7.601856 TCAAGGTTAACTTAAATGCCTTCATG 58.398 34.615 5.42 0.00 37.29 3.07
2987 3323 3.248266 GAAGTGATGCATTTGTTCCAGC 58.752 45.455 0.00 0.00 0.00 4.85
3101 3438 0.617413 CTGAGCAAGGTCAGGATGGT 59.383 55.000 18.81 0.00 40.39 3.55
3129 3467 3.686241 TCTTCAGATGGCGATTCTGTTTG 59.314 43.478 10.47 4.56 41.13 2.93
3190 3528 6.200854 CCCACAGACAAATTTTCTTTTGTAGC 59.799 38.462 2.81 0.00 46.84 3.58
3191 3529 6.200854 GCCCACAGACAAATTTTCTTTTGTAG 59.799 38.462 2.81 2.57 46.84 2.74
3192 3530 6.045955 GCCCACAGACAAATTTTCTTTTGTA 58.954 36.000 2.81 0.00 46.84 2.41
3203 3541 2.236146 TCTACGATGCCCACAGACAAAT 59.764 45.455 0.00 0.00 0.00 2.32
3207 3545 2.101582 AGAATCTACGATGCCCACAGAC 59.898 50.000 0.00 0.00 0.00 3.51
3217 3555 1.367840 GGGCGCCAGAATCTACGAT 59.632 57.895 30.85 0.00 0.00 3.73
3251 3589 3.496331 TCATCGTGGCAGATATACAGGA 58.504 45.455 0.00 0.00 34.13 3.86
3261 3599 2.028420 TCCTTGAATCATCGTGGCAG 57.972 50.000 0.00 0.00 0.00 4.85
3364 3702 8.871033 AACACAAGGAGTGGGTGAAATATTCAC 61.871 40.741 13.45 13.45 45.85 3.18
3365 3703 5.009631 CACAAGGAGTGGGTGAAATATTCA 58.990 41.667 0.00 0.00 44.69 2.57
3366 3704 5.476945 AACACAAGGAGTGGGTGAAATATTC 59.523 40.000 0.00 0.00 45.85 1.75
3367 3705 5.243730 CAACACAAGGAGTGGGTGAAATATT 59.756 40.000 0.00 0.00 45.85 1.28
3368 3706 4.766891 CAACACAAGGAGTGGGTGAAATAT 59.233 41.667 0.00 0.00 45.85 1.28
3369 3707 4.141287 CAACACAAGGAGTGGGTGAAATA 58.859 43.478 0.00 0.00 45.85 1.40
3370 3708 2.958355 CAACACAAGGAGTGGGTGAAAT 59.042 45.455 0.00 0.00 45.85 2.17
3371 3709 2.374184 CAACACAAGGAGTGGGTGAAA 58.626 47.619 0.00 0.00 45.85 2.69
3372 3710 2.021723 GCAACACAAGGAGTGGGTGAA 61.022 52.381 0.00 0.00 45.85 3.18
3373 3711 0.465460 GCAACACAAGGAGTGGGTGA 60.465 55.000 0.00 0.00 45.85 4.02
3374 3712 1.785041 CGCAACACAAGGAGTGGGTG 61.785 60.000 0.00 0.00 45.85 4.61
3379 3717 1.687123 AGTCTACGCAACACAAGGAGT 59.313 47.619 0.00 0.00 0.00 3.85
3380 3718 2.061773 CAGTCTACGCAACACAAGGAG 58.938 52.381 0.00 0.00 0.00 3.69
3381 3719 1.872237 GCAGTCTACGCAACACAAGGA 60.872 52.381 0.00 0.00 0.00 3.36
3382 3720 0.512952 GCAGTCTACGCAACACAAGG 59.487 55.000 0.00 0.00 0.00 3.61
3383 3721 1.193203 CTGCAGTCTACGCAACACAAG 59.807 52.381 5.25 0.00 39.30 3.16
3384 3722 1.217001 CTGCAGTCTACGCAACACAA 58.783 50.000 5.25 0.00 39.30 3.33
3385 3723 0.104120 ACTGCAGTCTACGCAACACA 59.896 50.000 15.25 0.00 39.30 3.72
3401 3739 9.150348 ACAAACTTTTCCAAAGACAAAATACTG 57.850 29.630 3.24 0.00 0.00 2.74
3444 3790 4.121317 TCACACCTACACAAAAACCTACG 58.879 43.478 0.00 0.00 0.00 3.51
3445 3791 7.916914 ATATCACACCTACACAAAAACCTAC 57.083 36.000 0.00 0.00 0.00 3.18
3503 3849 2.903784 TGTCTCTTCTTTTCATCCCGGA 59.096 45.455 0.73 0.00 0.00 5.14
3520 3866 2.993899 CGTCAGGCGTTTCTAAATGTCT 59.006 45.455 0.00 0.00 40.28 3.41
3534 3880 3.938963 TGGATTTTCTTACATCGTCAGGC 59.061 43.478 0.00 0.00 0.00 4.85
3539 3885 6.266168 TGCATTTGGATTTTCTTACATCGT 57.734 33.333 0.00 0.00 0.00 3.73
3654 4001 0.314935 TACGGGTCCACGTTGAAGAC 59.685 55.000 0.00 0.00 46.25 3.01
3664 4011 0.035739 GCAGAAGGTTTACGGGTCCA 59.964 55.000 0.00 0.00 0.00 4.02
3665 4012 0.035739 TGCAGAAGGTTTACGGGTCC 59.964 55.000 0.00 0.00 0.00 4.46
3666 4013 2.007608 GATGCAGAAGGTTTACGGGTC 58.992 52.381 0.00 0.00 0.00 4.46
3669 4016 1.006832 CCGATGCAGAAGGTTTACGG 58.993 55.000 0.00 0.00 0.00 4.02
3672 4019 1.404986 CGGACCGATGCAGAAGGTTTA 60.405 52.381 8.64 0.00 38.57 2.01
3681 4028 4.451150 GCAGACCGGACCGATGCA 62.451 66.667 24.62 0.00 36.88 3.96
3716 4072 1.289800 GGAGAAAACGCGTCCTGACC 61.290 60.000 14.44 10.61 0.00 4.02
3720 4076 1.668151 GCAGGAGAAAACGCGTCCT 60.668 57.895 14.44 12.05 41.68 3.85
3724 4080 0.660300 GGTTTGCAGGAGAAAACGCG 60.660 55.000 3.53 3.53 43.11 6.01
3743 4099 0.320771 CTCCCCCACGTTTGTCTCTG 60.321 60.000 0.00 0.00 0.00 3.35
3744 4100 1.481056 CCTCCCCCACGTTTGTCTCT 61.481 60.000 0.00 0.00 0.00 3.10
3759 4115 2.046217 GGACTCCCGCAAACCTCC 60.046 66.667 0.00 0.00 0.00 4.30
3781 4137 0.671472 CAGAAGCAGGCGTGACATCA 60.671 55.000 11.29 0.00 0.00 3.07
3783 4139 0.671781 GTCAGAAGCAGGCGTGACAT 60.672 55.000 11.29 0.00 39.33 3.06
3793 4149 0.108585 GGTCAAGGTGGTCAGAAGCA 59.891 55.000 0.00 0.00 0.00 3.91
3794 4150 0.606673 GGGTCAAGGTGGTCAGAAGC 60.607 60.000 0.00 0.00 0.00 3.86
3795 4151 0.764890 TGGGTCAAGGTGGTCAGAAG 59.235 55.000 0.00 0.00 0.00 2.85
3796 4152 1.351017 GATGGGTCAAGGTGGTCAGAA 59.649 52.381 0.00 0.00 0.00 3.02
3797 4153 0.984230 GATGGGTCAAGGTGGTCAGA 59.016 55.000 0.00 0.00 0.00 3.27
3799 4155 1.144691 TTGATGGGTCAAGGTGGTCA 58.855 50.000 0.00 0.00 39.36 4.02
3800 4156 2.286365 TTTGATGGGTCAAGGTGGTC 57.714 50.000 0.00 0.00 44.62 4.02
3801 4157 2.765689 TTTTGATGGGTCAAGGTGGT 57.234 45.000 0.00 0.00 44.62 4.16
3821 4177 2.609921 GACGGGAGGGGGAAGGTT 60.610 66.667 0.00 0.00 0.00 3.50
3829 4185 2.808315 CAGATGACGACGGGAGGG 59.192 66.667 0.00 0.00 0.00 4.30
3836 4192 1.369091 AAATGCGGGCAGATGACGAC 61.369 55.000 0.00 0.00 0.00 4.34
3837 4193 0.176910 TAAATGCGGGCAGATGACGA 59.823 50.000 0.00 0.00 0.00 4.20
3838 4194 1.069703 CATAAATGCGGGCAGATGACG 60.070 52.381 0.00 0.00 0.00 4.35
3839 4195 1.335324 GCATAAATGCGGGCAGATGAC 60.335 52.381 13.85 5.19 44.67 3.06
3840 4196 0.953727 GCATAAATGCGGGCAGATGA 59.046 50.000 13.85 0.00 44.67 2.92
3872 4245 2.125552 CTTCGATGTGGAGCGGCA 60.126 61.111 1.45 0.00 0.00 5.69
3873 4246 2.892425 CCTTCGATGTGGAGCGGC 60.892 66.667 0.00 0.00 0.00 6.53
3876 4249 2.467826 GCTGCCTTCGATGTGGAGC 61.468 63.158 13.85 13.85 0.00 4.70
3877 4250 0.809241 GAGCTGCCTTCGATGTGGAG 60.809 60.000 0.00 4.46 0.00 3.86
3880 4253 1.088340 CCTGAGCTGCCTTCGATGTG 61.088 60.000 0.00 0.00 0.00 3.21
3881 4254 1.220206 CCTGAGCTGCCTTCGATGT 59.780 57.895 0.00 0.00 0.00 3.06
3882 4255 1.523258 CCCTGAGCTGCCTTCGATG 60.523 63.158 0.00 0.00 0.00 3.84
3883 4256 2.906458 CCCTGAGCTGCCTTCGAT 59.094 61.111 0.00 0.00 0.00 3.59
3884 4257 4.087892 GCCCTGAGCTGCCTTCGA 62.088 66.667 0.00 0.00 38.99 3.71
3899 4272 4.415332 TGAGAAGTCGCGTCCGCC 62.415 66.667 5.77 0.00 37.98 6.13
3900 4273 3.173240 GTGAGAAGTCGCGTCCGC 61.173 66.667 5.77 0.68 37.85 5.54
3901 4274 1.797933 CAGTGAGAAGTCGCGTCCG 60.798 63.158 5.77 0.00 38.32 4.79
3976 4349 3.093278 CGGCGATGAGGCTTGTTC 58.907 61.111 0.00 0.00 44.22 3.18
3981 4354 2.590007 GAATGCGGCGATGAGGCT 60.590 61.111 12.98 0.00 44.22 4.58
3984 4357 0.447406 TGTTTGAATGCGGCGATGAG 59.553 50.000 12.98 0.00 0.00 2.90
3985 4358 0.447406 CTGTTTGAATGCGGCGATGA 59.553 50.000 12.98 0.00 0.00 2.92
3986 4359 1.135699 GCTGTTTGAATGCGGCGATG 61.136 55.000 12.98 0.00 0.00 3.84
3987 4360 1.137404 GCTGTTTGAATGCGGCGAT 59.863 52.632 12.98 0.00 0.00 4.58
3988 4361 1.911293 GAGCTGTTTGAATGCGGCGA 61.911 55.000 12.98 0.00 41.51 5.54
3989 4362 1.512734 GAGCTGTTTGAATGCGGCG 60.513 57.895 0.51 0.51 41.51 6.46
3990 4363 1.153958 GGAGCTGTTTGAATGCGGC 60.154 57.895 0.00 0.00 37.26 6.53
3991 4364 0.813184 ATGGAGCTGTTTGAATGCGG 59.187 50.000 0.00 0.00 0.00 5.69
3992 4365 2.642139 AATGGAGCTGTTTGAATGCG 57.358 45.000 0.00 0.00 0.00 4.73
3993 4366 5.521372 GGATTTAATGGAGCTGTTTGAATGC 59.479 40.000 0.00 0.00 0.00 3.56
3994 4367 5.745294 CGGATTTAATGGAGCTGTTTGAATG 59.255 40.000 0.00 0.00 0.00 2.67
3995 4368 5.679638 GCGGATTTAATGGAGCTGTTTGAAT 60.680 40.000 0.00 0.00 0.00 2.57
3996 4369 4.380444 GCGGATTTAATGGAGCTGTTTGAA 60.380 41.667 0.00 0.00 0.00 2.69
3997 4370 3.128589 GCGGATTTAATGGAGCTGTTTGA 59.871 43.478 0.00 0.00 0.00 2.69
3998 4371 3.438360 GCGGATTTAATGGAGCTGTTTG 58.562 45.455 0.00 0.00 0.00 2.93
3999 4372 2.097466 CGCGGATTTAATGGAGCTGTTT 59.903 45.455 0.00 0.00 0.00 2.83
4000 4373 1.670811 CGCGGATTTAATGGAGCTGTT 59.329 47.619 0.00 0.00 0.00 3.16
4001 4374 1.299541 CGCGGATTTAATGGAGCTGT 58.700 50.000 0.00 0.00 0.00 4.40
4002 4375 1.003545 CACGCGGATTTAATGGAGCTG 60.004 52.381 12.47 0.00 0.00 4.24
4003 4376 1.299541 CACGCGGATTTAATGGAGCT 58.700 50.000 12.47 0.00 0.00 4.09
4004 4377 0.307760 CCACGCGGATTTAATGGAGC 59.692 55.000 12.47 0.00 31.69 4.70
4007 4380 1.268539 GCTTCCACGCGGATTTAATGG 60.269 52.381 12.47 7.26 42.41 3.16
4015 4388 2.094757 TTTCTCAGCTTCCACGCGGA 62.095 55.000 12.47 0.00 40.60 5.54
4017 4390 0.371645 GATTTCTCAGCTTCCACGCG 59.628 55.000 3.53 3.53 34.40 6.01
4028 4401 4.096532 CGTGTGGCTAGAGTAGATTTCTCA 59.903 45.833 0.00 0.00 34.73 3.27
4035 4408 1.747709 GGACGTGTGGCTAGAGTAGA 58.252 55.000 0.00 0.00 0.00 2.59
4042 4415 0.387112 CGTAAACGGACGTGTGGCTA 60.387 55.000 0.00 0.00 38.04 3.93
4043 4416 1.662446 CGTAAACGGACGTGTGGCT 60.662 57.895 0.00 0.00 38.04 4.75
4055 4428 3.497031 GCTGGCCCGCTCGTAAAC 61.497 66.667 12.53 0.00 0.00 2.01
4058 4431 1.962321 TTAATGCTGGCCCGCTCGTA 61.962 55.000 20.57 6.79 0.00 3.43
4066 4439 1.070471 CGTTGCGTTTAATGCTGGCC 61.070 55.000 10.64 0.00 0.00 5.36
4070 4443 0.165079 CCGACGTTGCGTTTAATGCT 59.835 50.000 10.64 0.00 41.37 3.79
4071 4444 0.791610 CCCGACGTTGCGTTTAATGC 60.792 55.000 1.67 1.67 41.37 3.56
4085 4458 4.475135 GGGAGGAGCTTGCCCGAC 62.475 72.222 4.03 0.00 31.06 4.79
4088 4461 2.194326 GATGGGAGGAGCTTGCCC 59.806 66.667 11.42 11.42 42.38 5.36
4090 4463 2.203126 CGGATGGGAGGAGCTTGC 60.203 66.667 0.00 0.00 0.00 4.01
4122 4495 1.856265 CTTGCCTGGCGTTTGACCTC 61.856 60.000 14.98 0.00 0.00 3.85
4129 4502 2.690778 GCGATTCTTGCCTGGCGTT 61.691 57.895 14.98 0.00 0.00 4.84
4135 4508 0.674895 GAGTGGTGCGATTCTTGCCT 60.675 55.000 0.00 0.00 0.00 4.75
4137 4510 1.796796 GGAGTGGTGCGATTCTTGC 59.203 57.895 0.00 0.00 0.00 4.01
4154 4527 4.918201 GAAGATGGGGAGCGGCGG 62.918 72.222 9.78 0.00 0.00 6.13
4155 4528 3.798954 GAGAAGATGGGGAGCGGCG 62.799 68.421 0.51 0.51 0.00 6.46
4156 4529 2.110006 GAGAAGATGGGGAGCGGC 59.890 66.667 0.00 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.