Multiple sequence alignment - TraesCS3B01G126900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G126900 chr3B 100.000 3122 0 0 1 3122 103906927 103910048 0.000000e+00 5766.0
1 TraesCS3B01G126900 chr3B 89.723 506 50 2 2339 2843 498005588 498005084 0.000000e+00 645.0
2 TraesCS3B01G126900 chr3B 80.385 260 41 7 4 257 738623526 738623271 4.110000e-44 189.0
3 TraesCS3B01G126900 chr3B 82.877 146 13 9 1382 1526 766697784 766697918 1.520000e-23 121.0
4 TraesCS3B01G126900 chr3B 83.740 123 11 5 617 733 738622909 738622790 1.180000e-19 108.0
5 TraesCS3B01G126900 chr3B 92.453 53 4 0 2832 2884 416928403 416928455 3.340000e-10 76.8
6 TraesCS3B01G126900 chr3B 100.000 30 0 0 180 209 738623309 738623280 4.350000e-04 56.5
7 TraesCS3B01G126900 chr4A 86.297 1372 128 38 617 1958 571065678 571067019 0.000000e+00 1437.0
8 TraesCS3B01G126900 chr4A 92.099 405 30 2 2338 2741 111384241 111384644 1.260000e-158 569.0
9 TraesCS3B01G126900 chr4A 87.838 296 27 6 1671 1958 712005731 712005437 3.860000e-89 339.0
10 TraesCS3B01G126900 chr4A 80.989 263 36 6 2033 2283 712005404 712005144 2.460000e-46 196.0
11 TraesCS3B01G126900 chr7B 88.564 787 74 12 2342 3122 578633138 578632362 0.000000e+00 941.0
12 TraesCS3B01G126900 chr7B 83.387 620 65 21 1674 2260 363246331 363245717 9.850000e-150 540.0
13 TraesCS3B01G126900 chr7B 81.279 641 79 30 1671 2285 746412041 746412666 6.060000e-132 481.0
14 TraesCS3B01G126900 chr3D 92.969 512 28 2 2612 3122 380497871 380497367 0.000000e+00 739.0
15 TraesCS3B01G126900 chr3D 94.245 278 13 2 2338 2614 555889439 555889164 3.720000e-114 422.0
16 TraesCS3B01G126900 chr3D 79.159 547 69 23 1671 2204 121263894 121263380 1.390000e-88 337.0
17 TraesCS3B01G126900 chr7D 89.007 564 47 3 2339 2888 252400621 252400059 0.000000e+00 684.0
18 TraesCS3B01G126900 chr7D 82.036 501 64 13 3 495 380734231 380734713 1.350000e-108 403.0
19 TraesCS3B01G126900 chr7D 78.880 625 96 19 1671 2285 367190217 367190815 1.050000e-104 390.0
20 TraesCS3B01G126900 chr7D 81.765 170 28 3 1 167 546126695 546126526 4.200000e-29 139.0
21 TraesCS3B01G126900 chr7D 87.179 78 6 3 1362 1437 24667357 24667282 5.550000e-13 86.1
22 TraesCS3B01G126900 chr7D 84.507 71 3 2 584 654 84437562 84437500 2.600000e-06 63.9
23 TraesCS3B01G126900 chr6D 88.830 564 47 4 2339 2888 48382645 48382084 0.000000e+00 678.0
24 TraesCS3B01G126900 chr6D 93.035 402 26 1 2338 2739 244278613 244278214 1.250000e-163 586.0
25 TraesCS3B01G126900 chr6D 82.904 427 64 6 1 421 456825297 456825720 2.940000e-100 375.0
26 TraesCS3B01G126900 chr6D 94.737 57 3 0 2833 2889 244278134 244278078 4.290000e-14 89.8
27 TraesCS3B01G126900 chr6D 100.000 30 0 0 180 209 456825517 456825546 4.350000e-04 56.5
28 TraesCS3B01G126900 chr4D 88.652 564 48 4 2339 2888 365162594 365162033 0.000000e+00 673.0
29 TraesCS3B01G126900 chr4D 88.298 564 51 3 2339 2888 33930820 33930258 0.000000e+00 662.0
30 TraesCS3B01G126900 chr4D 87.342 158 15 4 584 739 309654846 309654692 3.200000e-40 176.0
31 TraesCS3B01G126900 chr4D 94.828 58 3 0 2832 2889 195713462 195713405 1.190000e-14 91.6
32 TraesCS3B01G126900 chr7A 84.562 719 66 22 1269 1958 8726735 8727437 0.000000e+00 671.0
33 TraesCS3B01G126900 chr7A 88.514 296 25 6 1671 1958 412729457 412729163 1.780000e-92 350.0
34 TraesCS3B01G126900 chr7A 89.224 232 19 6 1044 1273 8705061 8705288 5.100000e-73 285.0
35 TraesCS3B01G126900 chr7A 83.642 324 24 18 735 1057 8703830 8704125 8.530000e-71 278.0
36 TraesCS3B01G126900 chr7A 81.749 263 34 6 2033 2283 412729130 412728870 1.130000e-49 207.0
37 TraesCS3B01G126900 chr7A 90.909 143 13 0 543 685 8703684 8703826 3.180000e-45 193.0
38 TraesCS3B01G126900 chr2B 89.980 499 46 4 2347 2843 462987749 462987253 2.620000e-180 641.0
39 TraesCS3B01G126900 chr2B 84.483 116 17 1 2109 2223 52518376 52518261 2.540000e-21 113.0
40 TraesCS3B01G126900 chr2A 83.333 624 61 24 1671 2263 724977496 724976885 1.270000e-148 536.0
41 TraesCS3B01G126900 chr2A 90.268 411 32 5 2338 2741 132123825 132123416 5.930000e-147 531.0
42 TraesCS3B01G126900 chr2A 83.146 178 24 5 2110 2283 365024892 365025067 1.160000e-34 158.0
43 TraesCS3B01G126900 chr1A 82.222 630 74 21 1671 2274 562487184 562487801 2.780000e-140 508.0
44 TraesCS3B01G126900 chr1A 85.036 421 54 4 90 502 301861407 301860988 1.340000e-113 420.0
45 TraesCS3B01G126900 chr1A 89.474 152 10 2 584 735 301861009 301860864 1.480000e-43 187.0
46 TraesCS3B01G126900 chr1A 93.333 105 6 1 3018 3122 68993960 68993857 1.500000e-33 154.0
47 TraesCS3B01G126900 chr1A 100.000 30 0 0 180 209 301861274 301861245 4.350000e-04 56.5
48 TraesCS3B01G126900 chr1B 81.064 639 84 25 1671 2285 502381136 502381761 2.820000e-130 475.0
49 TraesCS3B01G126900 chr5D 85.167 418 39 10 1671 2067 509957096 509957511 1.040000e-109 407.0
50 TraesCS3B01G126900 chr5D 94.949 99 5 0 3024 3122 287252976 287253074 4.170000e-34 156.0
51 TraesCS3B01G126900 chr5D 94.949 99 5 0 3024 3122 345587820 345587722 4.170000e-34 156.0
52 TraesCS3B01G126900 chr5D 94.949 99 5 0 3024 3122 386309085 386308987 4.170000e-34 156.0
53 TraesCS3B01G126900 chr5D 94.828 58 3 0 677 734 296366832 296366889 1.190000e-14 91.6
54 TraesCS3B01G126900 chr1D 84.075 427 59 6 1 421 482244505 482244928 1.350000e-108 403.0
55 TraesCS3B01G126900 chr1D 94.949 99 5 0 3024 3122 269781728 269781630 4.170000e-34 156.0
56 TraesCS3B01G126900 chr1D 85.256 156 15 3 584 734 482244967 482245119 1.500000e-33 154.0
57 TraesCS3B01G126900 chr1D 100.000 30 0 0 180 209 482244725 482244754 4.350000e-04 56.5
58 TraesCS3B01G126900 chr6B 83.294 419 61 6 9 421 633012079 633011664 8.170000e-101 377.0
59 TraesCS3B01G126900 chr6B 83.294 419 61 5 9 421 633044528 633044943 8.170000e-101 377.0
60 TraesCS3B01G126900 chr6B 83.294 419 61 5 9 421 709523106 709523521 8.170000e-101 377.0
61 TraesCS3B01G126900 chr6B 79.062 320 45 14 1357 1657 709524094 709524410 1.900000e-47 200.0
62 TraesCS3B01G126900 chr6B 94.828 58 3 0 677 734 633011499 633011442 1.190000e-14 91.6
63 TraesCS3B01G126900 chr6B 94.828 58 3 0 677 734 633045108 633045165 1.190000e-14 91.6
64 TraesCS3B01G126900 chr6B 94.828 58 3 0 677 734 709523686 709523743 1.190000e-14 91.6
65 TraesCS3B01G126900 chr6A 87.879 297 25 8 1671 1958 180193256 180193550 3.860000e-89 339.0
66 TraesCS3B01G126900 chr6A 81.749 263 34 6 2033 2283 180193583 180193843 1.130000e-49 207.0
67 TraesCS3B01G126900 chr2D 91.866 209 17 0 2513 2721 580228568 580228360 3.050000e-75 292.0
68 TraesCS3B01G126900 chr2D 93.939 99 6 0 3024 3122 591531937 591532035 1.940000e-32 150.0
69 TraesCS3B01G126900 chr5B 81.319 182 26 5 1357 1537 60083583 60083409 1.170000e-29 141.0
70 TraesCS3B01G126900 chr4B 78.363 171 24 9 1357 1526 108661697 108661539 7.130000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G126900 chr3B 103906927 103910048 3121 False 5766.000000 5766 100.000000 1 3122 1 chr3B.!!$F1 3121
1 TraesCS3B01G126900 chr3B 498005084 498005588 504 True 645.000000 645 89.723000 2339 2843 1 chr3B.!!$R1 504
2 TraesCS3B01G126900 chr4A 571065678 571067019 1341 False 1437.000000 1437 86.297000 617 1958 1 chr4A.!!$F2 1341
3 TraesCS3B01G126900 chr4A 712005144 712005731 587 True 267.500000 339 84.413500 1671 2283 2 chr4A.!!$R1 612
4 TraesCS3B01G126900 chr7B 578632362 578633138 776 True 941.000000 941 88.564000 2342 3122 1 chr7B.!!$R2 780
5 TraesCS3B01G126900 chr7B 363245717 363246331 614 True 540.000000 540 83.387000 1674 2260 1 chr7B.!!$R1 586
6 TraesCS3B01G126900 chr7B 746412041 746412666 625 False 481.000000 481 81.279000 1671 2285 1 chr7B.!!$F1 614
7 TraesCS3B01G126900 chr3D 380497367 380497871 504 True 739.000000 739 92.969000 2612 3122 1 chr3D.!!$R2 510
8 TraesCS3B01G126900 chr3D 121263380 121263894 514 True 337.000000 337 79.159000 1671 2204 1 chr3D.!!$R1 533
9 TraesCS3B01G126900 chr7D 252400059 252400621 562 True 684.000000 684 89.007000 2339 2888 1 chr7D.!!$R3 549
10 TraesCS3B01G126900 chr7D 367190217 367190815 598 False 390.000000 390 78.880000 1671 2285 1 chr7D.!!$F1 614
11 TraesCS3B01G126900 chr6D 48382084 48382645 561 True 678.000000 678 88.830000 2339 2888 1 chr6D.!!$R1 549
12 TraesCS3B01G126900 chr6D 244278078 244278613 535 True 337.900000 586 93.886000 2338 2889 2 chr6D.!!$R2 551
13 TraesCS3B01G126900 chr4D 365162033 365162594 561 True 673.000000 673 88.652000 2339 2888 1 chr4D.!!$R4 549
14 TraesCS3B01G126900 chr4D 33930258 33930820 562 True 662.000000 662 88.298000 2339 2888 1 chr4D.!!$R1 549
15 TraesCS3B01G126900 chr7A 8726735 8727437 702 False 671.000000 671 84.562000 1269 1958 1 chr7A.!!$F1 689
16 TraesCS3B01G126900 chr7A 412728870 412729457 587 True 278.500000 350 85.131500 1671 2283 2 chr7A.!!$R1 612
17 TraesCS3B01G126900 chr7A 8703684 8705288 1604 False 252.000000 285 87.925000 543 1273 3 chr7A.!!$F2 730
18 TraesCS3B01G126900 chr2A 724976885 724977496 611 True 536.000000 536 83.333000 1671 2263 1 chr2A.!!$R2 592
19 TraesCS3B01G126900 chr1A 562487184 562487801 617 False 508.000000 508 82.222000 1671 2274 1 chr1A.!!$F1 603
20 TraesCS3B01G126900 chr1A 301860864 301861407 543 True 221.166667 420 91.503333 90 735 3 chr1A.!!$R2 645
21 TraesCS3B01G126900 chr1B 502381136 502381761 625 False 475.000000 475 81.064000 1671 2285 1 chr1B.!!$F1 614
22 TraesCS3B01G126900 chr1D 482244505 482245119 614 False 204.500000 403 89.777000 1 734 3 chr1D.!!$F1 733
23 TraesCS3B01G126900 chr6B 633011442 633012079 637 True 234.300000 377 89.061000 9 734 2 chr6B.!!$R1 725
24 TraesCS3B01G126900 chr6B 633044528 633045165 637 False 234.300000 377 89.061000 9 734 2 chr6B.!!$F1 725
25 TraesCS3B01G126900 chr6B 709523106 709524410 1304 False 222.866667 377 85.728000 9 1657 3 chr6B.!!$F2 1648
26 TraesCS3B01G126900 chr6A 180193256 180193843 587 False 273.000000 339 84.814000 1671 2283 2 chr6A.!!$F1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 1011 0.508641 GTTAGCACGCATAGCATCCG 59.491 55.0 0.0 0.0 0.0 4.18 F
1207 2263 0.034380 GGCCCTACCCCAAGTTCTTC 60.034 60.0 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 3210 0.033699 GCAGGAGCCAAGGAAGGAAT 60.034 55.0 0.00 0.0 33.58 3.01 R
2939 4195 0.108329 AAGTACAAGTCGGCCATCGG 60.108 55.0 2.24 0.0 39.77 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.602878 CCGTGTGTGTAGTGTACATCC 58.397 52.381 0.00 0.00 41.34 3.51
85 86 7.963532 ACAGAAGAAGGTTCATAGTTACAAGA 58.036 34.615 0.00 0.00 0.00 3.02
86 87 8.598041 ACAGAAGAAGGTTCATAGTTACAAGAT 58.402 33.333 0.00 0.00 0.00 2.40
139 140 4.037923 TGGAAACATTTCAGCTCCAAACTC 59.962 41.667 6.68 0.00 38.92 3.01
142 143 1.135575 CATTTCAGCTCCAAACTCGGC 60.136 52.381 0.00 0.00 0.00 5.54
173 174 6.517914 TTACGAAAAATGGTTTTGACATGC 57.482 33.333 0.00 0.00 37.07 4.06
220 263 2.599082 GGTACGCTTCAGAGATTTGTCG 59.401 50.000 0.00 0.00 0.00 4.35
221 264 2.724977 ACGCTTCAGAGATTTGTCGA 57.275 45.000 0.00 0.00 0.00 4.20
222 265 3.026630 ACGCTTCAGAGATTTGTCGAA 57.973 42.857 0.00 0.00 0.00 3.71
223 266 3.589988 ACGCTTCAGAGATTTGTCGAAT 58.410 40.909 0.00 0.00 0.00 3.34
224 267 4.744570 ACGCTTCAGAGATTTGTCGAATA 58.255 39.130 0.00 0.00 0.00 1.75
225 268 5.352284 ACGCTTCAGAGATTTGTCGAATAT 58.648 37.500 0.00 0.00 0.00 1.28
226 269 6.504398 ACGCTTCAGAGATTTGTCGAATATA 58.496 36.000 0.00 0.00 0.00 0.86
227 270 7.148641 ACGCTTCAGAGATTTGTCGAATATAT 58.851 34.615 0.00 0.00 0.00 0.86
228 271 7.115520 ACGCTTCAGAGATTTGTCGAATATATG 59.884 37.037 0.00 0.00 31.23 1.78
229 272 7.411264 CGCTTCAGAGATTTGTCGAATATATGG 60.411 40.741 2.94 0.00 31.01 2.74
230 273 7.386299 GCTTCAGAGATTTGTCGAATATATGGT 59.614 37.037 2.94 0.00 31.01 3.55
231 274 8.818141 TTCAGAGATTTGTCGAATATATGGTC 57.182 34.615 2.94 0.00 31.01 4.02
232 275 8.183104 TCAGAGATTTGTCGAATATATGGTCT 57.817 34.615 2.94 0.00 31.01 3.85
233 276 8.084684 TCAGAGATTTGTCGAATATATGGTCTG 58.915 37.037 2.94 0.00 31.01 3.51
234 277 6.870965 AGAGATTTGTCGAATATATGGTCTGC 59.129 38.462 0.00 0.00 0.00 4.26
235 278 6.763355 AGATTTGTCGAATATATGGTCTGCT 58.237 36.000 0.00 0.00 0.00 4.24
236 279 6.870965 AGATTTGTCGAATATATGGTCTGCTC 59.129 38.462 0.00 0.00 0.00 4.26
237 280 4.160736 TGTCGAATATATGGTCTGCTCG 57.839 45.455 0.00 0.00 0.00 5.03
238 281 3.057526 TGTCGAATATATGGTCTGCTCGG 60.058 47.826 0.00 0.00 0.00 4.63
239 282 3.057456 GTCGAATATATGGTCTGCTCGGT 60.057 47.826 0.00 0.00 0.00 4.69
240 283 4.155462 GTCGAATATATGGTCTGCTCGGTA 59.845 45.833 0.00 0.00 0.00 4.02
241 284 4.948004 TCGAATATATGGTCTGCTCGGTAT 59.052 41.667 1.98 0.00 0.00 2.73
242 285 5.037385 CGAATATATGGTCTGCTCGGTATG 58.963 45.833 0.00 0.00 0.00 2.39
243 286 5.393135 CGAATATATGGTCTGCTCGGTATGT 60.393 44.000 0.00 0.00 0.00 2.29
244 287 6.360370 AATATATGGTCTGCTCGGTATGTT 57.640 37.500 0.00 0.00 0.00 2.71
245 288 2.604046 ATGGTCTGCTCGGTATGTTC 57.396 50.000 0.00 0.00 0.00 3.18
246 289 0.535335 TGGTCTGCTCGGTATGTTCC 59.465 55.000 0.00 0.00 0.00 3.62
270 315 2.295349 AGAACAATCCTGCAAAGCACAG 59.705 45.455 0.00 0.00 33.79 3.66
294 339 8.950210 CAGTGGGAACATGTTGGATATATTATC 58.050 37.037 17.58 0.00 46.14 1.75
325 370 3.996363 GGCCGCAAATTTTTGATTTCTCT 59.004 39.130 7.21 0.00 40.55 3.10
331 376 6.074195 CGCAAATTTTTGATTTCTCTGAGCAA 60.074 34.615 7.21 0.00 40.55 3.91
333 378 7.170320 GCAAATTTTTGATTTCTCTGAGCAAGA 59.830 33.333 7.21 0.00 40.55 3.02
338 383 4.511527 TGATTTCTCTGAGCAAGATCCAC 58.488 43.478 0.00 0.00 33.29 4.02
358 403 5.074115 CCACCCTTAGTCCAACATTACAAA 58.926 41.667 0.00 0.00 0.00 2.83
384 429 6.433716 ACCTAGTTGACTCTAGTTGTTCCTAC 59.566 42.308 0.00 0.00 36.59 3.18
398 443 2.744202 GTTCCTACAACTGCCATGACTG 59.256 50.000 0.00 0.00 0.00 3.51
409 454 7.722728 ACAACTGCCATGACTGATAATCATAAT 59.277 33.333 0.00 0.00 34.99 1.28
459 525 8.521176 TCATACTCTACAAACCTTTCTGAGTAC 58.479 37.037 0.00 0.00 38.04 2.73
469 535 4.040095 ACCTTTCTGAGTACAGGTACAACC 59.960 45.833 11.78 2.05 43.60 3.77
473 539 4.164981 TCTGAGTACAGGTACAACCCAAT 58.835 43.478 11.78 0.00 43.60 3.16
480 546 8.019656 AGTACAGGTACAACCCAATTCTATAG 57.980 38.462 11.78 0.00 39.75 1.31
481 547 5.681639 ACAGGTACAACCCAATTCTATAGC 58.318 41.667 0.00 0.00 39.75 2.97
482 548 5.063880 CAGGTACAACCCAATTCTATAGCC 58.936 45.833 0.00 0.00 39.75 3.93
483 549 4.724798 AGGTACAACCCAATTCTATAGCCA 59.275 41.667 0.00 0.00 39.75 4.75
484 550 5.063880 GGTACAACCCAATTCTATAGCCAG 58.936 45.833 0.00 0.00 30.04 4.85
485 551 4.862641 ACAACCCAATTCTATAGCCAGT 57.137 40.909 0.00 0.00 0.00 4.00
486 552 4.781934 ACAACCCAATTCTATAGCCAGTC 58.218 43.478 0.00 0.00 0.00 3.51
487 553 4.227300 ACAACCCAATTCTATAGCCAGTCA 59.773 41.667 0.00 0.00 0.00 3.41
488 554 5.192927 CAACCCAATTCTATAGCCAGTCAA 58.807 41.667 0.00 0.00 0.00 3.18
489 555 5.041191 ACCCAATTCTATAGCCAGTCAAG 57.959 43.478 0.00 0.00 0.00 3.02
490 556 4.141390 ACCCAATTCTATAGCCAGTCAAGG 60.141 45.833 0.00 0.00 0.00 3.61
491 557 4.141390 CCCAATTCTATAGCCAGTCAAGGT 60.141 45.833 0.00 0.00 0.00 3.50
492 558 5.440610 CCAATTCTATAGCCAGTCAAGGTT 58.559 41.667 0.00 0.00 0.00 3.50
493 559 5.888161 CCAATTCTATAGCCAGTCAAGGTTT 59.112 40.000 0.00 0.00 0.00 3.27
494 560 6.038714 CCAATTCTATAGCCAGTCAAGGTTTC 59.961 42.308 0.00 0.00 0.00 2.78
495 561 4.386867 TCTATAGCCAGTCAAGGTTTCG 57.613 45.455 0.00 0.00 0.00 3.46
496 562 2.403252 ATAGCCAGTCAAGGTTTCGG 57.597 50.000 0.00 0.00 0.00 4.30
497 563 1.344065 TAGCCAGTCAAGGTTTCGGA 58.656 50.000 0.00 0.00 0.00 4.55
498 564 0.693049 AGCCAGTCAAGGTTTCGGAT 59.307 50.000 0.00 0.00 0.00 4.18
499 565 1.087501 GCCAGTCAAGGTTTCGGATC 58.912 55.000 0.00 0.00 0.00 3.36
500 566 1.739067 CCAGTCAAGGTTTCGGATCC 58.261 55.000 0.00 0.00 0.00 3.36
501 567 1.279271 CCAGTCAAGGTTTCGGATCCT 59.721 52.381 10.75 0.00 35.34 3.24
502 568 2.622436 CAGTCAAGGTTTCGGATCCTC 58.378 52.381 10.75 0.00 33.09 3.71
503 569 2.234908 CAGTCAAGGTTTCGGATCCTCT 59.765 50.000 10.75 0.00 33.09 3.69
504 570 2.907042 AGTCAAGGTTTCGGATCCTCTT 59.093 45.455 10.75 3.11 33.09 2.85
505 571 3.328050 AGTCAAGGTTTCGGATCCTCTTT 59.672 43.478 10.75 0.00 33.09 2.52
506 572 4.072839 GTCAAGGTTTCGGATCCTCTTTT 58.927 43.478 10.75 0.00 33.09 2.27
507 573 4.519350 GTCAAGGTTTCGGATCCTCTTTTT 59.481 41.667 10.75 0.00 33.09 1.94
535 601 4.442375 TTTTTGCGAAACTGGACTTTCA 57.558 36.364 0.00 0.00 31.46 2.69
536 602 3.414549 TTTGCGAAACTGGACTTTCAC 57.585 42.857 0.00 0.00 31.46 3.18
537 603 2.325583 TGCGAAACTGGACTTTCACT 57.674 45.000 0.00 0.00 31.46 3.41
538 604 1.939934 TGCGAAACTGGACTTTCACTG 59.060 47.619 0.00 0.00 31.46 3.66
539 605 2.210116 GCGAAACTGGACTTTCACTGA 58.790 47.619 0.00 0.00 31.46 3.41
540 606 2.808543 GCGAAACTGGACTTTCACTGAT 59.191 45.455 0.00 0.00 31.46 2.90
541 607 3.120511 GCGAAACTGGACTTTCACTGATC 60.121 47.826 0.00 0.00 31.46 2.92
544 610 5.333645 CGAAACTGGACTTTCACTGATCAAG 60.334 44.000 0.00 0.00 31.46 3.02
560 626 1.953686 TCAAGCAGGGCTGTTTACAAC 59.046 47.619 0.00 0.00 39.62 3.32
650 721 9.613428 TTAATTTATTTCGGAGATCACAGTCAT 57.387 29.630 0.00 0.00 35.04 3.06
661 732 9.860898 CGGAGATCACAGTCATATGAATATAAA 57.139 33.333 7.07 0.00 0.00 1.40
740 842 6.401047 CGGTACAGTCAAATAATCACAGTGTG 60.401 42.308 17.53 17.53 34.45 3.82
751 853 2.320215 ACAGTGTGCCAATGTGACG 58.680 52.632 7.35 0.00 41.15 4.35
757 859 1.302431 TGCCAATGTGACGAGGGTG 60.302 57.895 0.00 0.00 0.00 4.61
768 870 2.370445 CGAGGGTGGAGGGAGCAAT 61.370 63.158 0.00 0.00 0.00 3.56
780 882 4.384940 GAGGGAGCAATAGGAGTTCAATC 58.615 47.826 0.00 0.00 0.00 2.67
784 886 4.943705 GGAGCAATAGGAGTTCAATCACAA 59.056 41.667 0.00 0.00 0.00 3.33
786 888 4.946157 AGCAATAGGAGTTCAATCACAAGG 59.054 41.667 0.00 0.00 0.00 3.61
795 897 3.490439 TCAATCACAAGGCACTGAGAA 57.510 42.857 0.00 0.00 40.86 2.87
796 898 3.141398 TCAATCACAAGGCACTGAGAAC 58.859 45.455 0.00 0.00 40.86 3.01
814 916 5.404366 TGAGAACACACGTTAGCAGAATAAC 59.596 40.000 0.00 0.00 34.75 1.89
816 918 3.997762 ACACACGTTAGCAGAATAACCA 58.002 40.909 0.00 0.00 32.99 3.67
817 919 4.575885 ACACACGTTAGCAGAATAACCAT 58.424 39.130 0.00 0.00 32.99 3.55
820 922 5.794945 CACACGTTAGCAGAATAACCATTTG 59.205 40.000 0.00 0.00 32.99 2.32
823 926 7.173562 ACACGTTAGCAGAATAACCATTTGTTA 59.826 33.333 0.00 0.00 43.35 2.41
841 944 4.323417 TGTTAGAACGCCATGAACAATCT 58.677 39.130 0.00 0.00 0.00 2.40
889 993 6.037830 CCGAAAAATATTCTAATCGGTGGTGT 59.962 38.462 16.70 0.00 43.51 4.16
907 1011 0.508641 GTTAGCACGCATAGCATCCG 59.491 55.000 0.00 0.00 0.00 4.18
909 1013 1.744320 TAGCACGCATAGCATCCGGT 61.744 55.000 0.00 0.00 0.00 5.28
924 1028 1.005097 TCCGGTAGCTTCCAGTCTGTA 59.995 52.381 10.29 0.00 0.00 2.74
979 1086 0.912487 TAGCCAAATCCCCACCGAGT 60.912 55.000 0.00 0.00 0.00 4.18
1021 1128 1.160137 GCTTATCCATCCACATCGCC 58.840 55.000 0.00 0.00 0.00 5.54
1029 1136 1.135094 ATCCACATCGCCATTCCTCT 58.865 50.000 0.00 0.00 0.00 3.69
1037 1144 0.539051 CGCCATTCCTCTTCAGTCCT 59.461 55.000 0.00 0.00 0.00 3.85
1040 1147 2.679349 GCCATTCCTCTTCAGTCCTCAC 60.679 54.545 0.00 0.00 0.00 3.51
1041 1148 2.417924 CCATTCCTCTTCAGTCCTCACG 60.418 54.545 0.00 0.00 0.00 4.35
1042 1149 0.603569 TTCCTCTTCAGTCCTCACGC 59.396 55.000 0.00 0.00 0.00 5.34
1043 1150 1.153939 CCTCTTCAGTCCTCACGCG 60.154 63.158 3.53 3.53 0.00 6.01
1070 2126 3.839432 CGCCTCCGTCTTCCTCCC 61.839 72.222 0.00 0.00 0.00 4.30
1096 2152 2.281070 CTCACCACCAAGCGCTGT 60.281 61.111 12.58 1.42 0.00 4.40
1097 2153 2.280797 TCACCACCAAGCGCTGTC 60.281 61.111 12.58 0.00 0.00 3.51
1105 2161 2.604686 AAGCGCTGTCCCTCCTCA 60.605 61.111 12.58 0.00 0.00 3.86
1114 2170 1.036707 GTCCCTCCTCATCTTCTCCG 58.963 60.000 0.00 0.00 0.00 4.63
1117 2173 1.686428 CCCTCCTCATCTTCTCCGTCA 60.686 57.143 0.00 0.00 0.00 4.35
1124 2180 2.159240 TCATCTTCTCCGTCAATCCACG 60.159 50.000 0.00 0.00 39.61 4.94
1156 2212 2.226437 CGCTGCTCTCCTCTTCTCTATC 59.774 54.545 0.00 0.00 0.00 2.08
1173 2229 4.063967 CCAGCGCGTCCACTACCA 62.064 66.667 8.43 0.00 0.00 3.25
1206 2262 1.848886 CGGCCCTACCCCAAGTTCTT 61.849 60.000 0.00 0.00 33.26 2.52
1207 2263 0.034380 GGCCCTACCCCAAGTTCTTC 60.034 60.000 0.00 0.00 0.00 2.87
1208 2264 0.392595 GCCCTACCCCAAGTTCTTCG 60.393 60.000 0.00 0.00 0.00 3.79
1215 2271 1.486726 CCCCAAGTTCTTCGCTCCTAT 59.513 52.381 0.00 0.00 0.00 2.57
1222 2278 1.370657 CTTCGCTCCTATCGACGCC 60.371 63.158 0.00 0.00 35.51 5.68
1259 2315 3.977244 CAGCCGCCCGTGCTTTTT 61.977 61.111 1.82 0.00 36.81 1.94
1263 2319 2.127383 CGCCCGTGCTTTTTCGAC 60.127 61.111 0.00 0.00 34.43 4.20
1309 2365 4.838152 CGCGGTGGCTGGCTACAT 62.838 66.667 10.91 0.00 36.88 2.29
1320 2383 0.907704 TGGCTACATCCACTTCCCGT 60.908 55.000 0.00 0.00 0.00 5.28
1354 2428 2.815211 GGAGCTTCGATGCGTGCA 60.815 61.111 16.59 0.00 38.13 4.57
1355 2429 2.699809 GAGCTTCGATGCGTGCAG 59.300 61.111 16.59 0.00 38.13 4.41
1570 2668 3.702048 GACGGCCTGGTGGTGCTA 61.702 66.667 0.00 0.00 35.27 3.49
1574 2672 2.592993 GGCCTGGTGGTGCTACTCA 61.593 63.158 0.00 0.00 35.27 3.41
1637 2737 2.583143 CCCCAGTTTTCTCTTCCGTTT 58.417 47.619 0.00 0.00 0.00 3.60
1684 2785 2.723530 TCAGACTCCCCTTCTTCCTT 57.276 50.000 0.00 0.00 0.00 3.36
1703 2804 4.400884 TCCTTCATCTCTCTTCTCTTTCCG 59.599 45.833 0.00 0.00 0.00 4.30
1748 2855 6.315891 GCTCTCTGTCTTCTATTTTTCTGCAT 59.684 38.462 0.00 0.00 0.00 3.96
1811 2919 2.754658 CCCACCGGCGTCTAGACT 60.755 66.667 20.34 0.00 0.00 3.24
1825 2933 2.053244 CTAGACTCCCTCCATGCCATT 58.947 52.381 0.00 0.00 0.00 3.16
1941 3057 2.430610 CCCGAAGCAGAGGAGAGGG 61.431 68.421 0.00 0.00 0.00 4.30
1942 3058 1.380515 CCGAAGCAGAGGAGAGGGA 60.381 63.158 0.00 0.00 0.00 4.20
1980 3161 1.302192 GCAAACCAGTAGGCCGACA 60.302 57.895 18.90 0.00 39.06 4.35
1981 3162 1.574702 GCAAACCAGTAGGCCGACAC 61.575 60.000 18.90 7.90 39.06 3.67
1982 3163 0.034896 CAAACCAGTAGGCCGACACT 59.965 55.000 18.90 10.20 39.06 3.55
1983 3164 0.034896 AAACCAGTAGGCCGACACTG 59.965 55.000 18.90 20.49 41.51 3.66
1984 3165 2.125512 CCAGTAGGCCGACACTGC 60.126 66.667 22.58 0.00 40.69 4.40
1990 3171 4.021925 GGCCGACACTGCCTCCTT 62.022 66.667 0.00 0.00 45.70 3.36
1991 3172 2.435059 GCCGACACTGCCTCCTTC 60.435 66.667 0.00 0.00 0.00 3.46
1992 3173 2.948720 GCCGACACTGCCTCCTTCT 61.949 63.158 0.00 0.00 0.00 2.85
1993 3174 1.216710 CCGACACTGCCTCCTTCTC 59.783 63.158 0.00 0.00 0.00 2.87
1994 3175 1.153939 CGACACTGCCTCCTTCTCG 60.154 63.158 0.00 0.00 0.00 4.04
1995 3176 1.446966 GACACTGCCTCCTTCTCGC 60.447 63.158 0.00 0.00 0.00 5.03
1996 3177 1.882989 GACACTGCCTCCTTCTCGCT 61.883 60.000 0.00 0.00 0.00 4.93
1997 3178 1.294780 CACTGCCTCCTTCTCGCTT 59.705 57.895 0.00 0.00 0.00 4.68
1998 3179 0.739112 CACTGCCTCCTTCTCGCTTC 60.739 60.000 0.00 0.00 0.00 3.86
1999 3180 1.153469 CTGCCTCCTTCTCGCTTCC 60.153 63.158 0.00 0.00 0.00 3.46
2000 3181 2.188207 GCCTCCTTCTCGCTTCCC 59.812 66.667 0.00 0.00 0.00 3.97
2001 3182 2.363172 GCCTCCTTCTCGCTTCCCT 61.363 63.158 0.00 0.00 0.00 4.20
2002 3183 1.819905 CCTCCTTCTCGCTTCCCTC 59.180 63.158 0.00 0.00 0.00 4.30
2003 3184 1.681486 CCTCCTTCTCGCTTCCCTCC 61.681 65.000 0.00 0.00 0.00 4.30
2004 3185 0.686112 CTCCTTCTCGCTTCCCTCCT 60.686 60.000 0.00 0.00 0.00 3.69
2005 3186 0.252284 TCCTTCTCGCTTCCCTCCTT 60.252 55.000 0.00 0.00 0.00 3.36
2006 3187 0.176910 CCTTCTCGCTTCCCTCCTTC 59.823 60.000 0.00 0.00 0.00 3.46
2007 3188 0.176910 CTTCTCGCTTCCCTCCTTCC 59.823 60.000 0.00 0.00 0.00 3.46
2008 3189 0.252284 TTCTCGCTTCCCTCCTTCCT 60.252 55.000 0.00 0.00 0.00 3.36
2009 3190 0.252284 TCTCGCTTCCCTCCTTCCTT 60.252 55.000 0.00 0.00 0.00 3.36
2010 3191 0.615850 CTCGCTTCCCTCCTTCCTTT 59.384 55.000 0.00 0.00 0.00 3.11
2011 3192 1.003696 CTCGCTTCCCTCCTTCCTTTT 59.996 52.381 0.00 0.00 0.00 2.27
2012 3193 1.423921 TCGCTTCCCTCCTTCCTTTTT 59.576 47.619 0.00 0.00 0.00 1.94
2026 3207 3.357892 TTTTTCCGCCGCGATGCA 61.358 55.556 15.93 0.00 0.00 3.96
2027 3208 2.695759 TTTTTCCGCCGCGATGCAT 61.696 52.632 15.93 0.00 0.00 3.96
2028 3209 2.591129 TTTTTCCGCCGCGATGCATC 62.591 55.000 17.10 17.10 0.00 3.91
2029 3210 4.828925 TTCCGCCGCGATGCATCA 62.829 61.111 25.70 1.87 0.00 3.07
2030 3211 4.607325 TCCGCCGCGATGCATCAT 62.607 61.111 25.70 0.00 0.00 2.45
2031 3212 3.653009 CCGCCGCGATGCATCATT 61.653 61.111 25.70 0.00 0.00 2.57
2100 3292 4.273318 GTGGAGAAGGCAAATGGATAAGT 58.727 43.478 0.00 0.00 0.00 2.24
2101 3293 4.336713 GTGGAGAAGGCAAATGGATAAGTC 59.663 45.833 0.00 0.00 0.00 3.01
2106 3302 0.307760 GCAAATGGATAAGTCGCGGG 59.692 55.000 6.13 0.00 0.00 6.13
2141 3337 6.945435 TGGTGAAGCAGTTTAATTAAGGATCA 59.055 34.615 0.00 0.00 0.00 2.92
2143 3339 7.094377 GGTGAAGCAGTTTAATTAAGGATCACA 60.094 37.037 19.02 7.98 35.28 3.58
2166 3362 7.549134 CACAGGTAGAATTGTAACTAATGCAGA 59.451 37.037 0.00 0.00 0.00 4.26
2203 3401 3.015327 ACGTAGCGTTTCTCAGATACCT 58.985 45.455 0.00 0.00 36.35 3.08
2205 3403 4.272991 ACGTAGCGTTTCTCAGATACCTAG 59.727 45.833 0.00 0.00 36.35 3.02
2211 3409 7.259161 AGCGTTTCTCAGATACCTAGTTAAAG 58.741 38.462 0.00 0.00 0.00 1.85
2217 3415 9.629878 TTCTCAGATACCTAGTTAAAGTAGGAG 57.370 37.037 15.96 5.15 42.66 3.69
2240 3438 3.131223 TGCGGGTTGAATTCTCAAAAACA 59.869 39.130 7.05 0.00 43.18 2.83
2260 3458 1.688735 AGAGGGGCTTTTCTGCAAAAC 59.311 47.619 0.00 0.00 34.04 2.43
2285 3483 0.384725 ACGACGTACGACCAGAAACG 60.385 55.000 24.41 14.63 45.77 3.60
2286 3484 1.659262 CGACGTACGACCAGAAACGC 61.659 60.000 24.41 0.00 45.77 4.84
2287 3485 0.386478 GACGTACGACCAGAAACGCT 60.386 55.000 24.41 0.00 36.66 5.07
2288 3486 0.874390 ACGTACGACCAGAAACGCTA 59.126 50.000 24.41 0.00 36.66 4.26
2289 3487 1.470098 ACGTACGACCAGAAACGCTAT 59.530 47.619 24.41 0.00 36.66 2.97
2290 3488 2.677836 ACGTACGACCAGAAACGCTATA 59.322 45.455 24.41 0.00 36.66 1.31
2291 3489 3.313526 ACGTACGACCAGAAACGCTATAT 59.686 43.478 24.41 0.00 36.66 0.86
2292 3490 4.511454 ACGTACGACCAGAAACGCTATATA 59.489 41.667 24.41 0.00 36.66 0.86
2293 3491 5.180117 ACGTACGACCAGAAACGCTATATAT 59.820 40.000 24.41 0.00 36.66 0.86
2294 3492 6.368791 ACGTACGACCAGAAACGCTATATATA 59.631 38.462 24.41 0.00 36.66 0.86
2295 3493 7.065085 ACGTACGACCAGAAACGCTATATATAT 59.935 37.037 24.41 0.00 36.66 0.86
2296 3494 8.542953 CGTACGACCAGAAACGCTATATATATA 58.457 37.037 10.44 2.49 0.00 0.86
2322 3520 5.481615 AAGGAGAGAAGGAGAGATTAGGT 57.518 43.478 0.00 0.00 0.00 3.08
2323 3521 6.599986 AAGGAGAGAAGGAGAGATTAGGTA 57.400 41.667 0.00 0.00 0.00 3.08
2324 3522 6.200878 AGGAGAGAAGGAGAGATTAGGTAG 57.799 45.833 0.00 0.00 0.00 3.18
2325 3523 5.914716 AGGAGAGAAGGAGAGATTAGGTAGA 59.085 44.000 0.00 0.00 0.00 2.59
2326 3524 6.044404 AGGAGAGAAGGAGAGATTAGGTAGAG 59.956 46.154 0.00 0.00 0.00 2.43
2327 3525 6.043938 GGAGAGAAGGAGAGATTAGGTAGAGA 59.956 46.154 0.00 0.00 0.00 3.10
2328 3526 7.079451 AGAGAAGGAGAGATTAGGTAGAGAG 57.921 44.000 0.00 0.00 0.00 3.20
2329 3527 6.849697 AGAGAAGGAGAGATTAGGTAGAGAGA 59.150 42.308 0.00 0.00 0.00 3.10
2330 3528 7.517604 AGAGAAGGAGAGATTAGGTAGAGAGAT 59.482 40.741 0.00 0.00 0.00 2.75
2331 3529 7.461749 AGAAGGAGAGATTAGGTAGAGAGATG 58.538 42.308 0.00 0.00 0.00 2.90
2332 3530 6.139679 AGGAGAGATTAGGTAGAGAGATGG 57.860 45.833 0.00 0.00 0.00 3.51
2333 3531 5.615261 AGGAGAGATTAGGTAGAGAGATGGT 59.385 44.000 0.00 0.00 0.00 3.55
2334 3532 6.104094 AGGAGAGATTAGGTAGAGAGATGGTT 59.896 42.308 0.00 0.00 0.00 3.67
2335 3533 7.296150 AGGAGAGATTAGGTAGAGAGATGGTTA 59.704 40.741 0.00 0.00 0.00 2.85
2336 3534 7.392393 GGAGAGATTAGGTAGAGAGATGGTTAC 59.608 44.444 0.00 0.00 0.00 2.50
2432 3630 1.799157 TAGCACCCCATGTGGCCTTT 61.799 55.000 3.32 0.00 45.55 3.11
2439 3637 1.271871 CCCATGTGGCCTTTGTGACTA 60.272 52.381 3.32 0.00 0.00 2.59
2443 3641 0.250166 GTGGCCTTTGTGACTACCGT 60.250 55.000 3.32 0.00 0.00 4.83
2545 3748 6.398234 AATCTCCATGTAGTACTAGCAGTG 57.602 41.667 1.87 0.36 0.00 3.66
2672 3913 0.877743 GCAGGAGTCTTTTGGTCAGC 59.122 55.000 0.00 0.00 0.00 4.26
2793 4034 2.046892 AGTGCGTGATGGTGAGGC 60.047 61.111 0.00 0.00 0.00 4.70
2808 4050 2.032620 TGAGGCCGGCTTAAAACAAAA 58.967 42.857 28.56 0.00 0.00 2.44
2811 4053 2.168728 AGGCCGGCTTAAAACAAAACAA 59.831 40.909 28.56 0.00 0.00 2.83
2812 4054 2.937149 GGCCGGCTTAAAACAAAACAAA 59.063 40.909 28.56 0.00 0.00 2.83
2859 4115 2.165437 GTGAAGTGAACCAAAGTGGCAA 59.835 45.455 0.00 0.00 42.67 4.52
2907 4163 2.112279 TCCAGTTGGTGTAGAAGGGT 57.888 50.000 0.00 0.00 36.34 4.34
2939 4195 3.292159 GGGTTGGCGTTGGTGGTC 61.292 66.667 0.00 0.00 0.00 4.02
2956 4213 0.804933 GTCCGATGGCCGACTTGTAC 60.805 60.000 0.00 0.00 41.76 2.90
2999 4256 6.516718 AGCAATATACAGACGTAAGAGCATT 58.483 36.000 0.00 0.00 43.62 3.56
3010 4267 9.297586 CAGACGTAAGAGCATTTGTAATAGTAA 57.702 33.333 0.00 0.00 43.62 2.24
3022 4279 9.687210 CATTTGTAATAGTAATCCGTACTGCTA 57.313 33.333 0.00 0.00 43.24 3.49
3102 4359 5.321959 TGTCAAATCTTGAAACTTGTGCA 57.678 34.783 0.00 0.00 42.15 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 7.148474 ACACACGGCTATACAATTTGTTAGAAG 60.148 37.037 7.45 8.85 0.00 2.85
35 36 2.602878 GGATGTACACTACACACACGG 58.397 52.381 0.00 0.00 42.23 4.94
55 56 6.287589 ACTATGAACCTTCTTCTGTACAGG 57.712 41.667 22.48 8.96 0.00 4.00
119 120 3.004734 CCGAGTTTGGAGCTGAAATGTTT 59.995 43.478 0.00 0.00 0.00 2.83
121 122 2.154462 CCGAGTTTGGAGCTGAAATGT 58.846 47.619 0.00 0.00 0.00 2.71
139 140 1.352114 TTTTCGTAATCGTGGAGCCG 58.648 50.000 0.00 0.00 38.33 5.52
142 143 4.939509 ACCATTTTTCGTAATCGTGGAG 57.060 40.909 7.33 0.00 38.33 3.86
173 174 3.822735 CAGGCCATATATTCAACCAGGTG 59.177 47.826 5.01 0.00 0.00 4.00
209 252 6.870965 GCAGACCATATATTCGACAAATCTCT 59.129 38.462 0.00 0.00 0.00 3.10
210 253 6.870965 AGCAGACCATATATTCGACAAATCTC 59.129 38.462 0.00 0.00 0.00 2.75
211 254 6.763355 AGCAGACCATATATTCGACAAATCT 58.237 36.000 0.00 0.00 0.00 2.40
212 255 6.183360 CGAGCAGACCATATATTCGACAAATC 60.183 42.308 0.00 0.00 0.00 2.17
213 256 5.635280 CGAGCAGACCATATATTCGACAAAT 59.365 40.000 0.00 0.00 0.00 2.32
214 257 4.982295 CGAGCAGACCATATATTCGACAAA 59.018 41.667 0.00 0.00 0.00 2.83
215 258 4.546570 CGAGCAGACCATATATTCGACAA 58.453 43.478 0.00 0.00 0.00 3.18
216 259 3.057526 CCGAGCAGACCATATATTCGACA 60.058 47.826 2.98 0.00 0.00 4.35
217 260 3.057456 ACCGAGCAGACCATATATTCGAC 60.057 47.826 2.98 0.00 0.00 4.20
218 261 3.154710 ACCGAGCAGACCATATATTCGA 58.845 45.455 2.98 0.00 0.00 3.71
219 262 3.577649 ACCGAGCAGACCATATATTCG 57.422 47.619 0.00 0.00 0.00 3.34
220 263 5.967088 ACATACCGAGCAGACCATATATTC 58.033 41.667 0.00 0.00 0.00 1.75
221 264 6.360370 AACATACCGAGCAGACCATATATT 57.640 37.500 0.00 0.00 0.00 1.28
222 265 5.105310 GGAACATACCGAGCAGACCATATAT 60.105 44.000 0.00 0.00 0.00 0.86
223 266 4.219944 GGAACATACCGAGCAGACCATATA 59.780 45.833 0.00 0.00 0.00 0.86
224 267 3.006967 GGAACATACCGAGCAGACCATAT 59.993 47.826 0.00 0.00 0.00 1.78
225 268 2.364324 GGAACATACCGAGCAGACCATA 59.636 50.000 0.00 0.00 0.00 2.74
226 269 1.139058 GGAACATACCGAGCAGACCAT 59.861 52.381 0.00 0.00 0.00 3.55
227 270 0.535335 GGAACATACCGAGCAGACCA 59.465 55.000 0.00 0.00 0.00 4.02
228 271 0.179081 GGGAACATACCGAGCAGACC 60.179 60.000 0.00 0.00 0.00 3.85
229 272 0.535335 TGGGAACATACCGAGCAGAC 59.465 55.000 0.00 0.00 33.40 3.51
230 273 1.207089 CTTGGGAACATACCGAGCAGA 59.793 52.381 0.00 0.00 42.32 4.26
231 274 1.207089 TCTTGGGAACATACCGAGCAG 59.793 52.381 0.00 0.00 42.32 4.24
232 275 1.271856 TCTTGGGAACATACCGAGCA 58.728 50.000 0.00 0.00 42.32 4.26
233 276 2.396590 TTCTTGGGAACATACCGAGC 57.603 50.000 0.00 0.00 42.32 5.03
243 286 2.673775 TGCAGGATTGTTCTTGGGAA 57.326 45.000 0.00 0.00 29.96 3.97
244 287 2.673775 TTGCAGGATTGTTCTTGGGA 57.326 45.000 0.00 0.00 29.96 4.37
245 288 2.611224 GCTTTGCAGGATTGTTCTTGGG 60.611 50.000 0.00 0.00 29.96 4.12
246 289 2.036217 TGCTTTGCAGGATTGTTCTTGG 59.964 45.455 0.00 0.00 33.32 3.61
253 296 1.336517 CCACTGTGCTTTGCAGGATTG 60.337 52.381 1.29 0.00 40.08 2.67
257 302 1.108727 TTCCCACTGTGCTTTGCAGG 61.109 55.000 1.29 0.00 40.08 4.85
270 315 7.339466 GGGATAATATATCCAACATGTTCCCAC 59.661 40.741 8.48 0.00 39.93 4.61
310 355 8.033626 GGATCTTGCTCAGAGAAATCAAAAATT 58.966 33.333 0.00 0.00 33.87 1.82
325 370 2.501723 GACTAAGGGTGGATCTTGCTCA 59.498 50.000 0.00 0.00 0.00 4.26
331 376 2.915869 TGTTGGACTAAGGGTGGATCT 58.084 47.619 0.00 0.00 0.00 2.75
333 378 4.538490 TGTAATGTTGGACTAAGGGTGGAT 59.462 41.667 0.00 0.00 0.00 3.41
338 383 5.773176 AGGTTTTGTAATGTTGGACTAAGGG 59.227 40.000 0.00 0.00 0.00 3.95
358 403 5.839606 AGGAACAACTAGAGTCAACTAGGTT 59.160 40.000 0.00 0.00 42.68 3.50
384 429 7.500720 TTATGATTATCAGTCATGGCAGTTG 57.499 36.000 0.00 0.00 36.96 3.16
389 434 9.754382 AAACAAATTATGATTATCAGTCATGGC 57.246 29.630 0.29 0.00 36.96 4.40
429 495 9.793259 TCAGAAAGGTTTGTAGAGTATGAAAAT 57.207 29.630 0.00 0.00 0.00 1.82
430 496 9.273016 CTCAGAAAGGTTTGTAGAGTATGAAAA 57.727 33.333 0.00 0.00 0.00 2.29
431 497 8.429641 ACTCAGAAAGGTTTGTAGAGTATGAAA 58.570 33.333 0.00 0.00 33.51 2.69
432 498 7.963532 ACTCAGAAAGGTTTGTAGAGTATGAA 58.036 34.615 0.00 0.00 33.51 2.57
433 499 7.540474 ACTCAGAAAGGTTTGTAGAGTATGA 57.460 36.000 0.00 0.00 33.51 2.15
434 500 8.304596 TGTACTCAGAAAGGTTTGTAGAGTATG 58.695 37.037 0.00 0.00 38.77 2.39
435 501 8.418597 TGTACTCAGAAAGGTTTGTAGAGTAT 57.581 34.615 0.00 0.00 38.77 2.12
436 502 7.039923 CCTGTACTCAGAAAGGTTTGTAGAGTA 60.040 40.741 0.00 0.00 43.76 2.59
437 503 6.239345 CCTGTACTCAGAAAGGTTTGTAGAGT 60.239 42.308 0.00 0.00 43.76 3.24
438 504 6.159988 CCTGTACTCAGAAAGGTTTGTAGAG 58.840 44.000 0.00 0.00 43.76 2.43
439 505 5.601313 ACCTGTACTCAGAAAGGTTTGTAGA 59.399 40.000 0.00 0.00 40.14 2.59
440 506 5.855045 ACCTGTACTCAGAAAGGTTTGTAG 58.145 41.667 0.00 0.00 40.14 2.74
441 507 5.881923 ACCTGTACTCAGAAAGGTTTGTA 57.118 39.130 0.00 0.00 40.14 2.41
454 520 5.161943 AGAATTGGGTTGTACCTGTACTC 57.838 43.478 8.75 2.80 38.64 2.59
459 525 5.063880 GGCTATAGAATTGGGTTGTACCTG 58.936 45.833 3.21 0.00 38.64 4.00
469 535 5.041191 ACCTTGACTGGCTATAGAATTGG 57.959 43.478 3.21 0.00 0.00 3.16
473 539 4.382685 CCGAAACCTTGACTGGCTATAGAA 60.383 45.833 3.21 0.00 0.00 2.10
480 546 1.087501 GATCCGAAACCTTGACTGGC 58.912 55.000 0.00 0.00 0.00 4.85
481 547 1.279271 AGGATCCGAAACCTTGACTGG 59.721 52.381 5.98 0.00 31.95 4.00
482 548 2.234908 AGAGGATCCGAAACCTTGACTG 59.765 50.000 5.98 0.00 36.57 3.51
483 549 2.541466 AGAGGATCCGAAACCTTGACT 58.459 47.619 5.98 0.00 36.57 3.41
484 550 3.336138 AAGAGGATCCGAAACCTTGAC 57.664 47.619 5.98 0.00 36.57 3.18
485 551 4.367039 AAAAGAGGATCCGAAACCTTGA 57.633 40.909 5.98 0.00 36.57 3.02
514 580 4.082463 AGTGAAAGTCCAGTTTCGCAAAAA 60.082 37.500 18.28 0.00 45.46 1.94
515 581 3.442273 AGTGAAAGTCCAGTTTCGCAAAA 59.558 39.130 18.28 0.00 45.46 2.44
516 582 3.013921 AGTGAAAGTCCAGTTTCGCAAA 58.986 40.909 18.28 0.00 45.46 3.68
517 583 2.354510 CAGTGAAAGTCCAGTTTCGCAA 59.645 45.455 18.28 0.00 45.46 4.85
518 584 1.939934 CAGTGAAAGTCCAGTTTCGCA 59.060 47.619 18.28 0.00 45.46 5.10
519 585 2.210116 TCAGTGAAAGTCCAGTTTCGC 58.790 47.619 11.07 11.07 44.06 4.70
520 586 4.058124 TGATCAGTGAAAGTCCAGTTTCG 58.942 43.478 0.00 0.00 38.99 3.46
521 587 5.561725 GCTTGATCAGTGAAAGTCCAGTTTC 60.562 44.000 0.00 0.57 37.02 2.78
522 588 4.276926 GCTTGATCAGTGAAAGTCCAGTTT 59.723 41.667 0.00 0.00 0.00 2.66
523 589 3.817647 GCTTGATCAGTGAAAGTCCAGTT 59.182 43.478 0.00 0.00 0.00 3.16
524 590 3.181451 TGCTTGATCAGTGAAAGTCCAGT 60.181 43.478 0.00 0.00 0.00 4.00
525 591 3.405831 TGCTTGATCAGTGAAAGTCCAG 58.594 45.455 0.00 0.00 0.00 3.86
526 592 3.405831 CTGCTTGATCAGTGAAAGTCCA 58.594 45.455 0.00 0.00 0.00 4.02
527 593 2.746362 CCTGCTTGATCAGTGAAAGTCC 59.254 50.000 0.00 0.00 32.32 3.85
528 594 2.746362 CCCTGCTTGATCAGTGAAAGTC 59.254 50.000 0.00 0.00 32.32 3.01
529 595 2.787994 CCCTGCTTGATCAGTGAAAGT 58.212 47.619 0.00 0.00 32.32 2.66
530 596 1.471684 GCCCTGCTTGATCAGTGAAAG 59.528 52.381 0.00 0.00 32.32 2.62
531 597 1.074405 AGCCCTGCTTGATCAGTGAAA 59.926 47.619 0.00 0.00 33.89 2.69
532 598 0.694771 AGCCCTGCTTGATCAGTGAA 59.305 50.000 0.00 0.00 33.89 3.18
533 599 0.035725 CAGCCCTGCTTGATCAGTGA 60.036 55.000 0.00 0.00 36.40 3.41
534 600 0.322277 ACAGCCCTGCTTGATCAGTG 60.322 55.000 0.00 0.00 36.40 3.66
535 601 0.403271 AACAGCCCTGCTTGATCAGT 59.597 50.000 0.00 0.00 36.40 3.41
536 602 1.542492 AAACAGCCCTGCTTGATCAG 58.458 50.000 0.00 0.00 36.40 2.90
537 603 2.224744 TGTAAACAGCCCTGCTTGATCA 60.225 45.455 0.00 0.00 36.40 2.92
538 604 2.436417 TGTAAACAGCCCTGCTTGATC 58.564 47.619 0.00 0.00 36.40 2.92
539 605 2.584835 TGTAAACAGCCCTGCTTGAT 57.415 45.000 0.00 0.00 36.40 2.57
540 606 2.356665 TTGTAAACAGCCCTGCTTGA 57.643 45.000 0.00 0.00 36.40 3.02
562 628 8.092687 ACTGAAATTCAATCTCTCCCAAATTTG 58.907 33.333 11.40 11.40 0.00 2.32
569 635 5.356470 CCTTGACTGAAATTCAATCTCTCCC 59.644 44.000 6.01 0.00 32.57 4.30
570 636 5.942826 ACCTTGACTGAAATTCAATCTCTCC 59.057 40.000 6.01 0.00 32.57 3.71
661 732 5.642063 CGTTCCAACTCAGTAAACCATATGT 59.358 40.000 1.24 0.00 0.00 2.29
675 777 0.521735 GATGGCAACCGTTCCAACTC 59.478 55.000 0.00 0.00 35.75 3.01
740 842 2.040544 CCACCCTCGTCACATTGGC 61.041 63.158 0.00 0.00 0.00 4.52
750 852 1.048724 TATTGCTCCCTCCACCCTCG 61.049 60.000 0.00 0.00 0.00 4.63
751 853 0.761802 CTATTGCTCCCTCCACCCTC 59.238 60.000 0.00 0.00 0.00 4.30
757 859 2.119495 TGAACTCCTATTGCTCCCTCC 58.881 52.381 0.00 0.00 0.00 4.30
768 870 3.327757 AGTGCCTTGTGATTGAACTCCTA 59.672 43.478 0.00 0.00 0.00 2.94
780 882 1.331756 GTGTGTTCTCAGTGCCTTGTG 59.668 52.381 0.00 0.00 0.00 3.33
784 886 0.178068 AACGTGTGTTCTCAGTGCCT 59.822 50.000 0.00 0.00 30.83 4.75
786 888 1.192534 GCTAACGTGTGTTCTCAGTGC 59.807 52.381 0.00 0.00 39.54 4.40
795 897 3.997762 TGGTTATTCTGCTAACGTGTGT 58.002 40.909 0.00 0.00 33.31 3.72
796 898 5.545658 AATGGTTATTCTGCTAACGTGTG 57.454 39.130 0.00 0.00 33.31 3.82
814 916 4.165779 GTTCATGGCGTTCTAACAAATGG 58.834 43.478 0.00 0.00 0.00 3.16
816 918 5.446143 TTGTTCATGGCGTTCTAACAAAT 57.554 34.783 8.53 0.00 37.17 2.32
817 919 4.902443 TTGTTCATGGCGTTCTAACAAA 57.098 36.364 8.53 0.00 37.17 2.83
820 922 4.391830 TGAGATTGTTCATGGCGTTCTAAC 59.608 41.667 0.00 0.00 0.00 2.34
823 926 2.744202 GTGAGATTGTTCATGGCGTTCT 59.256 45.455 0.00 0.00 0.00 3.01
841 944 3.055458 TGCTCTCCGTTGGAATTATGTGA 60.055 43.478 0.00 0.00 0.00 3.58
889 993 0.599991 CCGGATGCTATGCGTGCTAA 60.600 55.000 0.00 0.00 42.91 3.09
907 1011 3.702045 AGATGTACAGACTGGAAGCTACC 59.298 47.826 7.51 0.00 37.60 3.18
909 1013 4.580995 GCTAGATGTACAGACTGGAAGCTA 59.419 45.833 16.26 3.64 37.60 3.32
924 1028 9.979578 TTTTAATCATTTGTTGTTGCTAGATGT 57.020 25.926 0.00 0.00 0.00 3.06
952 1056 1.411501 GGGGATTTGGCTATTGCTCCA 60.412 52.381 7.30 0.00 39.59 3.86
1021 1128 2.886081 CGTGAGGACTGAAGAGGAATG 58.114 52.381 0.00 0.00 0.00 2.67
1029 1136 4.717629 CGCCGCGTGAGGACTGAA 62.718 66.667 4.92 0.00 0.00 3.02
1060 2116 1.002011 GTTGCAGGGGGAGGAAGAC 60.002 63.158 0.00 0.00 0.00 3.01
1070 2126 2.282462 GGTGGTGAGGTTGCAGGG 60.282 66.667 0.00 0.00 0.00 4.45
1096 2152 0.631753 ACGGAGAAGATGAGGAGGGA 59.368 55.000 0.00 0.00 0.00 4.20
1097 2153 1.036707 GACGGAGAAGATGAGGAGGG 58.963 60.000 0.00 0.00 0.00 4.30
1105 2161 1.825474 ACGTGGATTGACGGAGAAGAT 59.175 47.619 0.00 0.00 43.84 2.40
1114 2170 0.250124 TGGTGGTGACGTGGATTGAC 60.250 55.000 0.00 0.00 0.00 3.18
1117 2173 1.302511 GCTGGTGGTGACGTGGATT 60.303 57.895 0.00 0.00 0.00 3.01
1124 2180 4.996434 AGCAGCGCTGGTGGTGAC 62.996 66.667 38.70 19.98 40.26 3.67
1156 2212 3.989698 CTGGTAGTGGACGCGCTGG 62.990 68.421 5.73 0.00 0.00 4.85
1206 2262 2.203167 AGGCGTCGATAGGAGCGA 60.203 61.111 0.00 0.00 39.20 4.93
1207 2263 2.050895 CAGGCGTCGATAGGAGCG 60.051 66.667 0.00 0.00 39.20 5.03
1208 2264 2.336809 CCAGGCGTCGATAGGAGC 59.663 66.667 0.00 0.00 37.97 4.70
1258 2314 0.109272 GAGTGGAGTGCATCGTCGAA 60.109 55.000 0.00 0.00 0.00 3.71
1259 2315 1.506718 GAGTGGAGTGCATCGTCGA 59.493 57.895 0.00 0.00 0.00 4.20
1263 2319 4.509756 CAGGAGTGGAGTGCATCG 57.490 61.111 0.00 0.00 0.00 3.84
1309 2365 1.701031 TTTGGCAGACGGGAAGTGGA 61.701 55.000 0.00 0.00 0.00 4.02
1379 2453 4.457496 CACCGACGAGCAGGCCAT 62.457 66.667 5.01 0.00 0.00 4.40
1483 2561 4.379243 AACCGAGCCTCCACTGCG 62.379 66.667 0.00 0.00 0.00 5.18
1554 2652 4.016706 GTAGCACCACCAGGCCGT 62.017 66.667 0.00 0.00 39.06 5.68
1615 2713 0.690762 CGGAAGAGAAAACTGGGGGA 59.309 55.000 0.00 0.00 0.00 4.81
1684 2785 3.445450 CACCGGAAAGAGAAGAGAGATGA 59.555 47.826 9.46 0.00 0.00 2.92
1703 2804 4.574892 AGCTCTTAGAGAAAAGAAGCACC 58.425 43.478 14.14 0.00 35.14 5.01
1811 2919 1.000590 ATGGGAATGGCATGGAGGGA 61.001 55.000 0.00 0.00 0.00 4.20
1825 2933 0.252881 AGGTCTCCAGCAAGATGGGA 60.253 55.000 4.32 0.00 41.01 4.37
1958 3074 0.965363 CGGCCTACTGGTTTGCCAAT 60.965 55.000 0.00 0.00 45.51 3.16
1980 3161 1.594310 GAAGCGAGAAGGAGGCAGT 59.406 57.895 0.00 0.00 0.00 4.40
1981 3162 1.153469 GGAAGCGAGAAGGAGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
1982 3163 2.660064 GGGAAGCGAGAAGGAGGCA 61.660 63.158 0.00 0.00 0.00 4.75
1983 3164 2.188207 GGGAAGCGAGAAGGAGGC 59.812 66.667 0.00 0.00 0.00 4.70
1984 3165 1.681486 GGAGGGAAGCGAGAAGGAGG 61.681 65.000 0.00 0.00 0.00 4.30
1985 3166 0.686112 AGGAGGGAAGCGAGAAGGAG 60.686 60.000 0.00 0.00 0.00 3.69
1986 3167 0.252284 AAGGAGGGAAGCGAGAAGGA 60.252 55.000 0.00 0.00 0.00 3.36
1987 3168 0.176910 GAAGGAGGGAAGCGAGAAGG 59.823 60.000 0.00 0.00 0.00 3.46
1988 3169 0.176910 GGAAGGAGGGAAGCGAGAAG 59.823 60.000 0.00 0.00 0.00 2.85
1989 3170 0.252284 AGGAAGGAGGGAAGCGAGAA 60.252 55.000 0.00 0.00 0.00 2.87
1990 3171 0.252284 AAGGAAGGAGGGAAGCGAGA 60.252 55.000 0.00 0.00 0.00 4.04
1991 3172 0.615850 AAAGGAAGGAGGGAAGCGAG 59.384 55.000 0.00 0.00 0.00 5.03
1992 3173 1.064825 AAAAGGAAGGAGGGAAGCGA 58.935 50.000 0.00 0.00 0.00 4.93
1993 3174 1.911057 AAAAAGGAAGGAGGGAAGCG 58.089 50.000 0.00 0.00 0.00 4.68
2009 3190 2.591129 GATGCATCGCGGCGGAAAAA 62.591 55.000 23.46 2.32 36.28 1.94
2010 3191 3.107104 GATGCATCGCGGCGGAAAA 62.107 57.895 23.46 2.76 36.28 2.29
2011 3192 3.572539 GATGCATCGCGGCGGAAA 61.573 61.111 23.46 3.19 36.28 3.13
2012 3193 4.828925 TGATGCATCGCGGCGGAA 62.829 61.111 23.46 4.05 36.28 4.30
2013 3194 4.607325 ATGATGCATCGCGGCGGA 62.607 61.111 23.46 9.74 36.28 5.54
2014 3195 3.584250 GAATGATGCATCGCGGCGG 62.584 63.158 23.46 8.49 36.28 6.13
2015 3196 2.127496 GAATGATGCATCGCGGCG 60.127 61.111 21.34 17.70 36.28 6.46
2016 3197 1.789078 AAGGAATGATGCATCGCGGC 61.789 55.000 21.34 10.54 0.00 6.53
2017 3198 0.236711 GAAGGAATGATGCATCGCGG 59.763 55.000 21.34 0.00 0.00 6.46
2018 3199 0.236711 GGAAGGAATGATGCATCGCG 59.763 55.000 21.34 0.00 0.00 5.87
2019 3200 1.602311 AGGAAGGAATGATGCATCGC 58.398 50.000 21.34 12.91 0.00 4.58
2020 3201 2.292569 CCAAGGAAGGAATGATGCATCG 59.707 50.000 21.34 2.80 0.00 3.84
2021 3202 2.035576 GCCAAGGAAGGAATGATGCATC 59.964 50.000 20.14 20.14 0.00 3.91
2022 3203 2.037144 GCCAAGGAAGGAATGATGCAT 58.963 47.619 0.00 0.00 0.00 3.96
2023 3204 1.006281 AGCCAAGGAAGGAATGATGCA 59.994 47.619 0.00 0.00 0.00 3.96
2024 3205 1.680207 GAGCCAAGGAAGGAATGATGC 59.320 52.381 0.00 0.00 0.00 3.91
2025 3206 2.091994 AGGAGCCAAGGAAGGAATGATG 60.092 50.000 0.00 0.00 0.00 3.07
2026 3207 2.091994 CAGGAGCCAAGGAAGGAATGAT 60.092 50.000 0.00 0.00 0.00 2.45
2027 3208 1.283029 CAGGAGCCAAGGAAGGAATGA 59.717 52.381 0.00 0.00 0.00 2.57
2028 3209 1.760192 CAGGAGCCAAGGAAGGAATG 58.240 55.000 0.00 0.00 0.00 2.67
2029 3210 0.033699 GCAGGAGCCAAGGAAGGAAT 60.034 55.000 0.00 0.00 33.58 3.01
2030 3211 1.380302 GCAGGAGCCAAGGAAGGAA 59.620 57.895 0.00 0.00 33.58 3.36
2031 3212 2.959484 CGCAGGAGCCAAGGAAGGA 61.959 63.158 0.00 0.00 37.52 3.36
2074 3266 2.040544 ATTTGCCTTCTCCACCGCG 61.041 57.895 0.00 0.00 0.00 6.46
2141 3337 7.620880 TCTGCATTAGTTACAATTCTACCTGT 58.379 34.615 0.00 0.00 0.00 4.00
2143 3339 7.092846 ACCTCTGCATTAGTTACAATTCTACCT 60.093 37.037 0.00 0.00 0.00 3.08
2185 3382 7.870509 TTAACTAGGTATCTGAGAAACGCTA 57.129 36.000 0.00 0.00 0.00 4.26
2197 3395 6.437094 CGCACTCCTACTTTAACTAGGTATC 58.563 44.000 0.00 0.00 33.58 2.24
2203 3401 3.434309 ACCCGCACTCCTACTTTAACTA 58.566 45.455 0.00 0.00 0.00 2.24
2205 3403 2.740447 CAACCCGCACTCCTACTTTAAC 59.260 50.000 0.00 0.00 0.00 2.01
2211 3409 2.007608 GAATTCAACCCGCACTCCTAC 58.992 52.381 0.00 0.00 0.00 3.18
2217 3415 3.363341 TTTTGAGAATTCAACCCGCAC 57.637 42.857 8.44 0.00 42.79 5.34
2240 3438 1.688735 GTTTTGCAGAAAAGCCCCTCT 59.311 47.619 0.00 0.00 31.57 3.69
2260 3458 1.225854 GGTCGTACGTCGTCGGAAG 60.226 63.158 16.05 0.00 41.85 3.46
2296 3494 8.911236 ACCTAATCTCTCCTTCTCTCCTTATAT 58.089 37.037 0.00 0.00 0.00 0.86
2297 3495 8.295597 ACCTAATCTCTCCTTCTCTCCTTATA 57.704 38.462 0.00 0.00 0.00 0.98
2298 3496 7.174363 ACCTAATCTCTCCTTCTCTCCTTAT 57.826 40.000 0.00 0.00 0.00 1.73
2299 3497 6.599986 ACCTAATCTCTCCTTCTCTCCTTA 57.400 41.667 0.00 0.00 0.00 2.69
2300 3498 5.481615 ACCTAATCTCTCCTTCTCTCCTT 57.518 43.478 0.00 0.00 0.00 3.36
2301 3499 5.914716 TCTACCTAATCTCTCCTTCTCTCCT 59.085 44.000 0.00 0.00 0.00 3.69
2302 3500 6.043938 TCTCTACCTAATCTCTCCTTCTCTCC 59.956 46.154 0.00 0.00 0.00 3.71
2303 3501 7.016268 TCTCTCTACCTAATCTCTCCTTCTCTC 59.984 44.444 0.00 0.00 0.00 3.20
2304 3502 6.849697 TCTCTCTACCTAATCTCTCCTTCTCT 59.150 42.308 0.00 0.00 0.00 3.10
2305 3503 7.074653 TCTCTCTACCTAATCTCTCCTTCTC 57.925 44.000 0.00 0.00 0.00 2.87
2306 3504 7.461749 CATCTCTCTACCTAATCTCTCCTTCT 58.538 42.308 0.00 0.00 0.00 2.85
2307 3505 6.659242 CCATCTCTCTACCTAATCTCTCCTTC 59.341 46.154 0.00 0.00 0.00 3.46
2308 3506 6.104094 ACCATCTCTCTACCTAATCTCTCCTT 59.896 42.308 0.00 0.00 0.00 3.36
2309 3507 5.615261 ACCATCTCTCTACCTAATCTCTCCT 59.385 44.000 0.00 0.00 0.00 3.69
2310 3508 5.887754 ACCATCTCTCTACCTAATCTCTCC 58.112 45.833 0.00 0.00 0.00 3.71
2311 3509 7.392393 GGTAACCATCTCTCTACCTAATCTCTC 59.608 44.444 0.00 0.00 32.60 3.20
2312 3510 7.147105 TGGTAACCATCTCTCTACCTAATCTCT 60.147 40.741 0.00 0.00 35.75 3.10
2313 3511 7.005296 TGGTAACCATCTCTCTACCTAATCTC 58.995 42.308 0.00 0.00 35.75 2.75
2314 3512 6.778559 GTGGTAACCATCTCTCTACCTAATCT 59.221 42.308 0.00 0.00 35.28 2.40
2315 3513 6.778559 AGTGGTAACCATCTCTCTACCTAATC 59.221 42.308 0.00 0.00 35.28 1.75
2316 3514 6.551601 CAGTGGTAACCATCTCTCTACCTAAT 59.448 42.308 0.00 0.00 35.28 1.73
2317 3515 5.892119 CAGTGGTAACCATCTCTCTACCTAA 59.108 44.000 0.00 0.00 35.28 2.69
2318 3516 5.193124 TCAGTGGTAACCATCTCTCTACCTA 59.807 44.000 0.00 0.00 35.28 3.08
2319 3517 4.017407 TCAGTGGTAACCATCTCTCTACCT 60.017 45.833 0.00 0.00 35.28 3.08
2320 3518 4.279145 TCAGTGGTAACCATCTCTCTACC 58.721 47.826 0.00 0.00 35.28 3.18
2321 3519 5.221342 CCATCAGTGGTAACCATCTCTCTAC 60.221 48.000 0.00 0.00 40.83 2.59
2322 3520 4.895889 CCATCAGTGGTAACCATCTCTCTA 59.104 45.833 0.00 0.00 40.83 2.43
2323 3521 3.708631 CCATCAGTGGTAACCATCTCTCT 59.291 47.826 0.00 0.00 40.83 3.10
2324 3522 4.065321 CCATCAGTGGTAACCATCTCTC 57.935 50.000 0.00 0.00 40.83 3.20
2432 3630 5.293324 GCAATGAATCATTACGGTAGTCACA 59.707 40.000 8.29 0.00 32.35 3.58
2770 4011 2.046988 CCATCACGCACTGAGCCA 60.047 61.111 0.00 0.00 41.38 4.75
2793 4034 4.493382 GCAGTTTGTTTTGTTTTAAGCCGG 60.493 41.667 0.00 0.00 0.00 6.13
2808 4050 2.534019 CGTCACCGCTGCAGTTTGT 61.534 57.895 16.64 7.33 0.00 2.83
2811 4053 1.956170 CTTCGTCACCGCTGCAGTT 60.956 57.895 16.64 0.00 0.00 3.16
2812 4054 2.356313 CTTCGTCACCGCTGCAGT 60.356 61.111 16.64 0.00 0.00 4.40
2859 4115 2.185350 CGTCGAGCCTGCCTTCAT 59.815 61.111 0.00 0.00 0.00 2.57
2939 4195 0.108329 AAGTACAAGTCGGCCATCGG 60.108 55.000 2.24 0.00 39.77 4.18
2956 4213 7.958053 ATTGCTTTCTTCATCAAAGGAAAAG 57.042 32.000 3.65 0.00 42.33 2.27
2999 4256 8.455903 ACTAGCAGTACGGATTACTATTACAA 57.544 34.615 0.00 0.00 39.18 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.