AutoCloner

Multiple sequence alignment - TraesCS3B01G126600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G126600	chr3B	100.000	2264	0	0	1	2264	103208790	103211053	0.000000e+00	4181.0
1	TraesCS3B01G126600	chr6B	90.625	1792	147	12	1	1789	702947484	702945711	0.000000e+00	2359.0
2	TraesCS3B01G126600	chr6B	87.491	1463	138	20	744	2183	281222673	281221233	0.000000e+00	1646.0
3	TraesCS3B01G126600	chr5B	87.394	1531	128	28	745	2231	89727561	89729070	0.000000e+00	1698.0
4	TraesCS3B01G126600	chr5B	90.532	1204	70	12	744	1918	387878875	387880063	0.000000e+00	1552.0
5	TraesCS3B01G126600	chr5B	85.630	341	43	4	1926	2264	387880035	387880371	9.950000e-94	353.0
6	TraesCS3B01G126600	chr5B	83.721	258	35	6	2010	2264	387880373	387880120	1.050000e-58	237.0
7	TraesCS3B01G126600	chr2B	94.038	1107	53	10	744	1849	430231719	430230625	0.000000e+00	1666.0
8	TraesCS3B01G126600	chr2B	87.771	1431	117	21	743	2134	215847911	215849322	0.000000e+00	1620.0
9	TraesCS3B01G126600	chr2B	94.039	822	48	1	1	821	215847096	215847917	0.000000e+00	1245.0
10	TraesCS3B01G126600	chr7D	86.436	1563	148	32	745	2264	131690135	131691676	0.000000e+00	1653.0
11	TraesCS3B01G126600	chr7D	91.507	989	76	3	1	984	460799815	460800800	0.000000e+00	1354.0
12	TraesCS3B01G126600	chr7D	91.610	584	34	4	1256	1839	72155657	72156225	0.000000e+00	793.0
13	TraesCS3B01G126600	chr7D	81.961	255	44	2	2010	2264	131691678	131691426	4.900000e-52	215.0
14	TraesCS3B01G126600	chr1B	91.855	1105	74	4	744	1848	612424317	612425405	0.000000e+00	1528.0
15	TraesCS3B01G126600	chr1B	94.431	808	41	2	1	804	449940848	449941655	0.000000e+00	1240.0
16	TraesCS3B01G126600	chr4B	91.978	1097	72	5	744	1839	467349297	467348216	0.000000e+00	1524.0
17	TraesCS3B01G126600	chr4B	94.233	815	45	2	1	814	644536151	644535338	0.000000e+00	1243.0
18	TraesCS3B01G126600	chr4B	82.097	391	60	9	1877	2263	467348143	467347759	2.170000e-85	326.0
19	TraesCS3B01G126600	chr1D	87.436	1361	117	27	744	2072	446420047	446421385	0.000000e+00	1517.0
20	TraesCS3B01G126600	chr1D	91.788	1096	76	4	744	1839	198509334	198510415	0.000000e+00	1513.0
21	TraesCS3B01G126600	chr1D	81.923	260	41	6	2007	2264	14672589	14672844	4.900000e-52	215.0
22	TraesCS3B01G126600	chr1D	89.062	64	6	1	1892	1954	26553762	26553825	6.700000e-11	78.7
23	TraesCS3B01G126600	chr1D	89.231	65	4	3	1892	1954	481984917	481984854	6.700000e-11	78.7
24	TraesCS3B01G126600	chr3D	87.904	1298	116	16	826	2100	116062340	116063619	0.000000e+00	1489.0
25	TraesCS3B01G126600	chr5D	92.042	1043	64	7	760	1802	358005917	358004894	0.000000e+00	1448.0
26	TraesCS3B01G126600	chr5D	94.404	822	44	2	1	821	520878526	520879346	0.000000e+00	1262.0
27	TraesCS3B01G126600	chr5D	94.039	822	47	2	1	821	358006760	358005940	0.000000e+00	1245.0
28	TraesCS3B01G126600	chr5D	89.062	64	6	1	1892	1954	348345809	348345872	6.700000e-11	78.7
29	TraesCS3B01G126600	chr2D	93.431	822	50	2	1	821	476789213	476790031	0.000000e+00	1216.0
30	TraesCS3B01G126600	chr2A	93.309	822	54	1	1	821	764946151	764945330	0.000000e+00	1212.0
31	TraesCS3B01G126600	chr4D	84.470	264	34	4	2007	2264	495818442	495818704	1.040000e-63	254.0
32	TraesCS3B01G126600	chr6A	77.926	376	74	9	1893	2264	466146369	466146739	2.260000e-55	226.0
33	TraesCS3B01G126600	chr6A	89.062	64	6	1	1892	1954	466149397	466149334	6.700000e-11	78.7
34	TraesCS3B01G126600	chr6A	89.062	64	6	1	1892	1954	466153137	466153074	6.700000e-11	78.7
35	TraesCS3B01G126600	chr6A	89.062	64	6	1	1892	1954	466342489	466342426	6.700000e-11	78.7
36	TraesCS3B01G126600	chr1A	89.062	64	6	1	1892	1954	311799410	311799473	6.700000e-11	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G126600	chr3B	103208790	103211053	2263	False	4181.0	4181	100.0000	1	2264	1	chr3B.!!$F1	2263
1	TraesCS3B01G126600	chr6B	702945711	702947484	1773	True	2359.0	2359	90.6250	1	1789	1	chr6B.!!$R2	1788
2	TraesCS3B01G126600	chr6B	281221233	281222673	1440	True	1646.0	1646	87.4910	744	2183	1	chr6B.!!$R1	1439
3	TraesCS3B01G126600	chr5B	89727561	89729070	1509	False	1698.0	1698	87.3940	745	2231	1	chr5B.!!$F1	1486
4	TraesCS3B01G126600	chr5B	387878875	387880371	1496	False	952.5	1552	88.0810	744	2264	2	chr5B.!!$F2	1520
5	TraesCS3B01G126600	chr2B	430230625	430231719	1094	True	1666.0	1666	94.0380	744	1849	1	chr2B.!!$R1	1105
6	TraesCS3B01G126600	chr2B	215847096	215849322	2226	False	1432.5	1620	90.9050	1	2134	2	chr2B.!!$F1	2133
7	TraesCS3B01G126600	chr7D	131690135	131691676	1541	False	1653.0	1653	86.4360	745	2264	1	chr7D.!!$F2	1519
8	TraesCS3B01G126600	chr7D	460799815	460800800	985	False	1354.0	1354	91.5070	1	984	1	chr7D.!!$F3	983
9	TraesCS3B01G126600	chr7D	72155657	72156225	568	False	793.0	793	91.6100	1256	1839	1	chr7D.!!$F1	583
10	TraesCS3B01G126600	chr1B	612424317	612425405	1088	False	1528.0	1528	91.8550	744	1848	1	chr1B.!!$F2	1104
11	TraesCS3B01G126600	chr1B	449940848	449941655	807	False	1240.0	1240	94.4310	1	804	1	chr1B.!!$F1	803
12	TraesCS3B01G126600	chr4B	644535338	644536151	813	True	1243.0	1243	94.2330	1	814	1	chr4B.!!$R1	813
13	TraesCS3B01G126600	chr4B	467347759	467349297	1538	True	925.0	1524	87.0375	744	2263	2	chr4B.!!$R2	1519
14	TraesCS3B01G126600	chr1D	446420047	446421385	1338	False	1517.0	1517	87.4360	744	2072	1	chr1D.!!$F4	1328
15	TraesCS3B01G126600	chr1D	198509334	198510415	1081	False	1513.0	1513	91.7880	744	1839	1	chr1D.!!$F3	1095
16	TraesCS3B01G126600	chr3D	116062340	116063619	1279	False	1489.0	1489	87.9040	826	2100	1	chr3D.!!$F1	1274
17	TraesCS3B01G126600	chr5D	358004894	358006760	1866	True	1346.5	1448	93.0405	1	1802	2	chr5D.!!$R1	1801
18	TraesCS3B01G126600	chr5D	520878526	520879346	820	False	1262.0	1262	94.4040	1	821	1	chr5D.!!$F2	820
19	TraesCS3B01G126600	chr2D	476789213	476790031	818	False	1216.0	1216	93.4310	1	821	1	chr2D.!!$F1	820
20	TraesCS3B01G126600	chr2A	764945330	764946151	821	True	1212.0	1212	93.3090	1	821	1	chr2A.!!$R1	820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
456	459	0.25361	TGAACAAGGTTCACGTGGGT	59.746	50.0	17.0	0.0	32.45	4.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1919	2127	0.040058	TCTGGCGGTAGGGTACTGAA	59.96	55.0	0.0	0.0	37.22	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
47	48	2.280524	CGTTCCTTGCCGGTGACA	60.281	61.111	1.90	0.00	0.00	3.58
244	247	8.707796	AAATGATCTATCAAATTGATGAGCCT	57.292	30.769	17.93	7.06	40.69	4.58
343	346	3.173151	TGAGAGGCCTCACAAGTATCAA	58.827	45.455	33.90	7.01	44.01	2.57
367	370	1.469703	CCTTGCTCGCATTTGATGACA	59.530	47.619	0.00	0.00	0.00	3.58
448	451	5.452078	TCACATTGGAATGAACAAGGTTC	57.548	39.130	6.37	2.25	40.39	3.62
456	459	0.253610	TGAACAAGGTTCACGTGGGT	59.746	50.000	17.00	0.00	32.45	4.51
505	508	6.018959	GCCTCATAGTGGCCTGAGTATCAA	62.019	50.000	16.23	0.00	43.26	2.57
584	590	3.252554	AGAAGAGGTTCAGGAGTGACT	57.747	47.619	0.00	0.00	34.82	3.41
596	602	5.272402	TCAGGAGTGACTTGGATGATCTAA	58.728	41.667	0.00	0.00	0.00	2.10
601	607	3.873952	GTGACTTGGATGATCTAACTGGC	59.126	47.826	0.00	0.00	0.00	4.85
705	711	3.064207	GACACAACGTTAGGAGATGCAA	58.936	45.455	0.00	0.00	0.00	4.08
758	836	1.254954	AACACGTGTAGGGAGGACTC	58.745	55.000	23.69	0.00	0.00	3.36
794	873	2.579738	GCCGTGGAGGAAGGACTC	59.420	66.667	0.00	0.00	45.00	3.36
882	1003	3.935203	CCTATCAACGTGTTGCTCAATCT	59.065	43.478	7.85	0.00	40.24	2.40
1104	1236	5.053978	ACAAGGTGAAGGAGAAAGATGTT	57.946	39.130	0.00	0.00	0.00	2.71
1169	1301	0.754472	TCCACCGACCGAAAGAAGTT	59.246	50.000	0.00	0.00	0.00	2.66
1397	1530	4.646492	AGATGTCCAAAAGGACCAATATGC	59.354	41.667	11.79	0.00	38.04	3.14
1437	1570	2.500229	CGGCTGTTCCAAGAAAGGTTA	58.500	47.619	0.00	0.00	34.01	2.85
1584	1718	0.689623	ACAAGGCACAAGAGGAGGAG	59.310	55.000	0.00	0.00	0.00	3.69
1587	1721	0.043940	AGGCACAAGAGGAGGAGGAT	59.956	55.000	0.00	0.00	0.00	3.24
1592	1726	2.702478	CACAAGAGGAGGAGGATGCATA	59.298	50.000	0.00	0.00	0.00	3.14
1622	1757	0.112412	GGGAAATGGCCCCGTATGAT	59.888	55.000	0.00	0.00	42.62	2.45
1683	1828	3.621268	CAGATGAAGCCATGCCAAATTTG	59.379	43.478	11.40	11.40	32.09	2.32
1685	1830	4.467082	AGATGAAGCCATGCCAAATTTGTA	59.533	37.500	16.73	6.17	32.09	2.41
1686	1831	4.822685	TGAAGCCATGCCAAATTTGTAT	57.177	36.364	16.73	8.16	0.00	2.29
1687	1832	4.757594	TGAAGCCATGCCAAATTTGTATC	58.242	39.130	16.73	6.44	0.00	2.24
1688	1833	3.441496	AGCCATGCCAAATTTGTATCG	57.559	42.857	16.73	5.42	0.00	2.92
1689	1834	2.760092	AGCCATGCCAAATTTGTATCGT	59.240	40.909	16.73	4.66	0.00	3.73
1690	1835	2.859538	GCCATGCCAAATTTGTATCGTG	59.140	45.455	16.73	14.67	0.00	4.35
1691	1836	3.428725	GCCATGCCAAATTTGTATCGTGA	60.429	43.478	16.73	0.00	0.00	4.35
1692	1837	4.742417	CCATGCCAAATTTGTATCGTGAA	58.258	39.130	16.73	0.00	0.00	3.18
1693	1838	4.562394	CCATGCCAAATTTGTATCGTGAAC	59.438	41.667	16.73	0.00	0.00	3.18
1696	1841	5.218885	TGCCAAATTTGTATCGTGAACTTG	58.781	37.500	16.73	0.00	0.00	3.16
1699	1844	5.563751	CCAAATTTGTATCGTGAACTTGTCG	59.436	40.000	16.73	0.00	0.00	4.35
1704	1849	3.978855	TGTATCGTGAACTTGTCGTGAAG	59.021	43.478	0.00	0.00	0.00	3.02
1718	1863	8.233190	ACTTGTCGTGAAGTATGTAGTACTAAC	58.767	37.037	3.61	0.00	42.83	2.34
1730	1879	3.975168	AGTACTAACGCAAGAACCCAT	57.025	42.857	0.00	0.00	43.62	4.00
1731	1880	4.281898	AGTACTAACGCAAGAACCCATT	57.718	40.909	0.00	0.00	43.62	3.16
1824	1975	7.920682	GGTGTCATGAATGAACTTTAGTTTGTT	59.079	33.333	0.00	0.00	38.75	2.83
1825	1976	9.301153	GTGTCATGAATGAACTTTAGTTTGTTT	57.699	29.630	0.00	0.00	38.75	2.83
1889	2097	5.751243	TGCTCTGTTTTACTCTGTTTTCC	57.249	39.130	0.00	0.00	0.00	3.13
1890	2098	4.578928	TGCTCTGTTTTACTCTGTTTTCCC	59.421	41.667	0.00	0.00	0.00	3.97
1892	2100	4.466827	TCTGTTTTACTCTGTTTTCCCCC	58.533	43.478	0.00	0.00	0.00	5.40
1909	2117	4.489771	CCTACCGCCAAGGCCCTG	62.490	72.222	5.34	0.00	46.52	4.45
1910	2118	4.489771	CTACCGCCAAGGCCCTGG	62.490	72.222	16.83	16.83	46.52	4.45
1916	2124	4.489771	CCAAGGCCCTGGCGGTAG	62.490	72.222	7.66	0.00	43.06	3.18
1917	2125	4.489771	CAAGGCCCTGGCGGTAGG	62.490	72.222	0.00	0.00	43.06	3.18
1921	2129	4.858680	GCCCTGGCGGTAGGCTTC	62.859	72.222	6.37	0.00	43.62	3.86
1922	2130	3.399181	CCCTGGCGGTAGGCTTCA	61.399	66.667	0.00	0.00	44.18	3.02
1923	2131	2.187946	CCTGGCGGTAGGCTTCAG	59.812	66.667	0.00	0.00	44.18	3.02
1939	2147	0.040058	TCAGTACCCTACCGCCAGAA	59.960	55.000	0.00	0.00	0.00	3.02
1983	2233	7.038048	GCTAAGTTACTATGACGGTAAAACCT	58.962	38.462	0.00	0.00	35.66	3.50
2041	2292	0.976641	CTCTGGTGGTAGGTTGCAGA	59.023	55.000	0.00	0.00	0.00	4.26
2050	2301	3.906720	GTAGGTTGCAGAATCCTACCA	57.093	47.619	19.50	1.01	44.43	3.25
2075	2327	4.189580	CCATGGCGGTAGGGGGTG	62.190	72.222	0.00	0.00	0.00	4.61
2091	2345	2.159014	GGGGTGGAAAGTTTTTGTGACC	60.159	50.000	0.00	0.00	0.00	4.02
2093	2347	3.055747	GGGTGGAAAGTTTTTGTGACCAA	60.056	43.478	0.00	0.00	0.00	3.67
2136	2392	0.461516	GGTAAAGCCTACCGCCAGAC	60.462	60.000	0.00	0.00	38.78	3.51
2183	2439	0.593128	CCAGGGTGCTCGTTTTTCTG	59.407	55.000	0.00	0.00	0.00	3.02
2190	2446	2.096819	GTGCTCGTTTTTCTGGTCACAA	59.903	45.455	0.00	0.00	0.00	3.33
2198	2454	6.363896	TCGTTTTTCTGGTCACAAAAACTTTC	59.636	34.615	18.11	1.67	44.77	2.62
2200	2456	5.730296	TTTCTGGTCACAAAAACTTTCCA	57.270	34.783	0.00	0.00	0.00	3.53
2205	2461	2.498078	GTCACAAAAACTTTCCACCCCA	59.502	45.455	0.00	0.00	0.00	4.96

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
47	48	7.161404	TGATGAAAGTGTACTTGAGTATTGCT	58.839	34.615	0.00	0.00	36.12	3.91
244	247	1.534697	GTCCCTTGTTGTCCCACCA	59.465	57.895	0.00	0.00	0.00	4.17
331	334	2.754552	GCAAGGCCATTGATACTTGTGA	59.245	45.455	16.28	0.00	41.83	3.58
343	346	0.966875	TCAAATGCGAGCAAGGCCAT	60.967	50.000	5.01	0.00	0.00	4.40
367	370	2.110213	TTTCTCGCCCGTGTTGCT	59.890	55.556	0.00	0.00	0.00	3.91
418	421	4.001618	TCATTCCAATGTGAACTCGTGA	57.998	40.909	0.00	0.00	37.65	4.35
448	451	2.718747	TAAACCGAGGCACCCACGTG	62.719	60.000	9.08	9.08	43.35	4.49
456	459	2.307686	AGGAAAGGATTAAACCGAGGCA	59.692	45.455	0.00	0.00	34.73	4.75
584	590	4.141711	GGTGTAGCCAGTTAGATCATCCAA	60.142	45.833	0.00	0.00	37.17	3.53
601	607	5.047802	ACCAAATTGCTTCATTCTGGTGTAG	60.048	40.000	0.00	0.00	34.46	2.74
608	614	5.079643	ACCACTACCAAATTGCTTCATTCT	58.920	37.500	0.00	0.00	0.00	2.40
705	711	4.377897	CGTGTTGGTTCTAGGTTTCTTCT	58.622	43.478	0.00	0.00	0.00	2.85
882	1003	6.440010	ACCATTCACATTATTTCAACCATCCA	59.560	34.615	0.00	0.00	0.00	3.41
1068	1200	0.804989	CCTTGTCCAAAGATGCGTCC	59.195	55.000	1.23	0.00	0.00	4.79
1104	1236	2.290641	ACACCAACATGGCGGAATCTTA	60.291	45.455	9.48	0.00	42.67	2.10
1169	1301	7.895144	AAATATCTCCTTCCTTCCATCCATA	57.105	36.000	0.00	0.00	0.00	2.74
1307	1440	2.094752	GGCGGTGACTGCATACAAATTT	60.095	45.455	19.20	0.00	0.00	1.82
1309	1442	1.094785	GGCGGTGACTGCATACAAAT	58.905	50.000	19.20	0.00	0.00	2.32
1397	1530	1.293924	CTGGCGCCTAAGACAATCTG	58.706	55.000	29.70	0.00	0.00	2.90
1437	1570	2.039613	CTCTTCCTCCAAGCCTCTTTGT	59.960	50.000	0.00	0.00	31.26	2.83
1584	1718	3.152341	CCCCTTCTTGTCATATGCATCC	58.848	50.000	0.19	0.00	0.00	3.51
1587	1721	4.314522	TTTCCCCTTCTTGTCATATGCA	57.685	40.909	0.00	0.00	0.00	3.96
1592	1726	2.460669	GCCATTTCCCCTTCTTGTCAT	58.539	47.619	0.00	0.00	0.00	3.06
1645	1790	4.017126	TCATCTGGTTACATGACGAGTCT	58.983	43.478	0.00	0.00	0.00	3.24
1683	1828	3.979495	ACTTCACGACAAGTTCACGATAC	59.021	43.478	0.00	0.00	32.34	2.24
1685	1830	3.093717	ACTTCACGACAAGTTCACGAT	57.906	42.857	0.00	0.00	32.34	3.73
1686	1831	2.572191	ACTTCACGACAAGTTCACGA	57.428	45.000	0.00	0.00	32.34	4.35
1687	1832	3.734231	ACATACTTCACGACAAGTTCACG	59.266	43.478	8.67	0.00	37.75	4.35
1688	1833	5.919141	ACTACATACTTCACGACAAGTTCAC	59.081	40.000	8.67	0.00	37.75	3.18
1689	1834	6.080648	ACTACATACTTCACGACAAGTTCA	57.919	37.500	8.67	0.00	37.75	3.18
1690	1835	7.303998	AGTACTACATACTTCACGACAAGTTC	58.696	38.462	8.67	0.00	41.71	3.01
1691	1836	7.211966	AGTACTACATACTTCACGACAAGTT	57.788	36.000	8.67	0.00	41.71	2.66
1692	1837	6.814506	AGTACTACATACTTCACGACAAGT	57.185	37.500	0.00	8.46	41.71	3.16
1693	1838	7.424738	CGTTAGTACTACATACTTCACGACAAG	59.575	40.741	12.05	0.00	44.55	3.16
1696	1841	5.674580	GCGTTAGTACTACATACTTCACGAC	59.325	44.000	18.68	9.49	44.55	4.34
1699	1844	7.246311	TCTTGCGTTAGTACTACATACTTCAC	58.754	38.462	0.91	0.00	41.71	3.18
1704	1849	5.745769	GGGTTCTTGCGTTAGTACTACATAC	59.254	44.000	0.91	0.00	0.00	2.39
1718	1863	1.662876	CGACACAAATGGGTTCTTGCG	60.663	52.381	0.00	0.00	0.00	4.85
1730	1879	2.092995	CACGACAAGTTCACGACACAAA	59.907	45.455	0.00	0.00	0.00	2.83
1731	1880	1.656594	CACGACAAGTTCACGACACAA	59.343	47.619	0.00	0.00	0.00	3.33
1824	1975	5.588246	TCAGCACAGTTCACAGAAATTACAA	59.412	36.000	0.00	0.00	0.00	2.41
1825	1976	5.122519	TCAGCACAGTTCACAGAAATTACA	58.877	37.500	0.00	0.00	0.00	2.41
1839	1990	1.835927	GCCCCTCTTCTCAGCACAGT	61.836	60.000	0.00	0.00	0.00	3.55
1892	2100	4.489771	CAGGGCCTTGGCGGTAGG	62.490	72.222	1.32	0.00	35.80	3.18
1893	2101	4.489771	CCAGGGCCTTGGCGGTAG	62.490	72.222	22.62	0.00	34.25	3.18
1899	2107	4.489771	CTACCGCCAGGGCCTTGG	62.490	72.222	29.21	29.21	43.47	3.61
1900	2108	4.489771	CCTACCGCCAGGGCCTTG	62.490	72.222	8.15	8.15	43.47	3.61
1904	2112	4.858680	GAAGCCTACCGCCAGGGC	62.859	72.222	0.00	0.00	45.57	5.19
1905	2113	3.391665	CTGAAGCCTACCGCCAGGG	62.392	68.421	3.06	0.00	43.47	4.45
1906	2114	1.327690	TACTGAAGCCTACCGCCAGG	61.328	60.000	0.00	0.00	45.13	4.45
1907	2115	0.179108	GTACTGAAGCCTACCGCCAG	60.179	60.000	0.00	0.00	38.78	4.85
1908	2116	1.610554	GGTACTGAAGCCTACCGCCA	61.611	60.000	0.00	0.00	38.78	5.69
1909	2117	1.143401	GGTACTGAAGCCTACCGCC	59.857	63.158	0.00	0.00	38.78	6.13
1910	2118	1.143401	GGGTACTGAAGCCTACCGC	59.857	63.158	0.00	0.00	42.89	5.68
1916	2124	1.143401	GCGGTAGGGTACTGAAGCC	59.857	63.158	0.00	0.00	46.88	4.35
1917	2125	1.143401	GGCGGTAGGGTACTGAAGC	59.857	63.158	0.00	0.00	37.22	3.86
1918	2126	0.460311	CTGGCGGTAGGGTACTGAAG	59.540	60.000	0.00	0.00	37.22	3.02
1919	2127	0.040058	TCTGGCGGTAGGGTACTGAA	59.960	55.000	0.00	0.00	37.22	3.02
1920	2128	0.040058	TTCTGGCGGTAGGGTACTGA	59.960	55.000	0.00	0.00	37.22	3.41
1921	2129	0.899720	TTTCTGGCGGTAGGGTACTG	59.100	55.000	0.00	0.00	38.10	2.74
1922	2130	0.900421	GTTTCTGGCGGTAGGGTACT	59.100	55.000	0.00	0.00	0.00	2.73
1923	2131	0.107993	GGTTTCTGGCGGTAGGGTAC	60.108	60.000	0.00	0.00	0.00	3.34
1983	2233	2.668632	CTTACCGCCAAGGCTCCA	59.331	61.111	9.73	0.00	46.52	3.86
2008	2259	1.541310	CCAGAGGTTGTGGCGGTAGA	61.541	60.000	0.00	0.00	0.00	2.59
2041	2292	2.642171	TGGTCTCTGGTGGTAGGATT	57.358	50.000	0.00	0.00	0.00	3.01
2107	2361	0.986550	AGGCTTTACCCTACCGCCAT	60.987	55.000	0.00	0.00	43.07	4.40
2136	2392	0.464036	TTGACCCTACAGCCATAGCG	59.536	55.000	0.00	0.00	46.67	4.26
2183	2439	2.159014	GGGGTGGAAAGTTTTTGTGACC	60.159	50.000	0.00	0.00	0.00	4.02
2190	2446	2.521126	CGGTATGGGGTGGAAAGTTTT	58.479	47.619	0.00	0.00	0.00	2.43
2198	2454	2.203337	CATGGCGGTATGGGGTGG	60.203	66.667	0.00	0.00	0.00	4.61

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.