Multiple sequence alignment - TraesCS3B01G126500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G126500 chr3B 100.000 4993 0 0 1 4993 103036622 103031630 0.000000e+00 9221.0
1 TraesCS3B01G126500 chr3B 89.604 202 16 3 1925 2124 103034406 103034208 8.300000e-63 252.0
2 TraesCS3B01G126500 chr3B 89.604 202 16 3 2217 2415 103034698 103034499 8.300000e-63 252.0
3 TraesCS3B01G126500 chr3B 80.757 317 35 14 4637 4937 662010338 662010644 1.810000e-54 224.0
4 TraesCS3B01G126500 chr3D 92.188 4621 212 59 1 4569 63415145 63410622 0.000000e+00 6396.0
5 TraesCS3B01G126500 chr3D 89.831 413 18 8 4581 4993 63410194 63409806 4.460000e-140 508.0
6 TraesCS3B01G126500 chr3D 90.000 200 13 4 2217 2413 63413241 63413046 8.300000e-63 252.0
7 TraesCS3B01G126500 chr3D 81.562 320 31 13 4637 4940 373599403 373599710 6.460000e-59 239.0
8 TraesCS3B01G126500 chr3D 87.500 200 19 4 1925 2122 63412953 63412758 5.030000e-55 226.0
9 TraesCS3B01G126500 chr3A 92.909 3878 168 50 625 4451 72699974 72696153 0.000000e+00 5539.0
10 TraesCS3B01G126500 chr3A 93.493 584 30 3 1 584 72701134 72700559 0.000000e+00 861.0
11 TraesCS3B01G126500 chr3A 88.976 254 18 4 4746 4993 72492500 72492251 6.280000e-79 305.0
12 TraesCS3B01G126500 chr3A 90.769 195 13 3 2222 2413 72698656 72698464 6.410000e-64 255.0
13 TraesCS3B01G126500 chr3A 88.272 162 9 5 4583 4743 72673150 72672998 8.540000e-43 185.0
14 TraesCS3B01G126500 chr3A 85.950 121 6 4 4459 4569 72673333 72673214 8.780000e-23 119.0
15 TraesCS3B01G126500 chr1B 83.168 303 35 8 4643 4940 428720800 428721091 3.830000e-66 263.0
16 TraesCS3B01G126500 chr5D 82.848 309 31 12 4643 4940 495366118 495365821 1.780000e-64 257.0
17 TraesCS3B01G126500 chr5D 80.892 314 31 12 4643 4940 256182877 256182577 2.340000e-53 220.0
18 TraesCS3B01G126500 chr2D 81.734 323 31 12 4634 4940 30004780 30005090 1.390000e-60 244.0
19 TraesCS3B01G126500 chr2D 81.789 313 30 11 4643 4940 617045054 617044754 2.320000e-58 237.0
20 TraesCS3B01G126500 chrUn 81.620 321 32 14 4637 4940 160950 161260 1.800000e-59 241.0
21 TraesCS3B01G126500 chr1D 81.620 321 32 14 4637 4940 18760684 18760994 1.800000e-59 241.0
22 TraesCS3B01G126500 chr1D 81.470 313 31 11 4643 4940 102156653 102156353 1.080000e-56 231.0
23 TraesCS3B01G126500 chr7A 81.410 312 31 16 4643 4938 77583727 77583427 3.890000e-56 230.0
24 TraesCS3B01G126500 chr5A 80.938 320 35 13 4637 4940 74670729 74671038 3.890000e-56 230.0
25 TraesCS3B01G126500 chr1A 81.944 216 31 4 4633 4847 545033215 545033007 5.140000e-40 176.0
26 TraesCS3B01G126500 chr6A 83.696 92 8 2 1394 1485 390567609 390567693 4.140000e-11 80.5
27 TraesCS3B01G126500 chr6A 94.286 35 1 1 4531 4564 581813565 581813531 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G126500 chr3B 103031630 103036622 4992 True 3241.666667 9221 93.069333 1 4993 3 chr3B.!!$R1 4992
1 TraesCS3B01G126500 chr3D 63409806 63415145 5339 True 1845.500000 6396 89.879750 1 4993 4 chr3D.!!$R1 4992
2 TraesCS3B01G126500 chr3A 72696153 72701134 4981 True 2218.333333 5539 92.390333 1 4451 3 chr3A.!!$R3 4450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 366 0.178998 GCATGGTCCATGAGAGGCAT 60.179 55.000 32.16 0.00 43.81 4.40 F
1096 1667 0.110419 GATCTCATCTCCGCGTCTCG 60.110 60.000 4.92 0.00 38.08 4.04 F
1429 2004 0.181824 TCTGGGCGGCCCTAAATTAC 59.818 55.000 36.21 10.08 45.70 1.89 F
1601 2186 0.392193 CCTTCGCAGCATTCTCAGGT 60.392 55.000 0.00 0.00 0.00 4.00 F
3276 3875 1.540363 GCCAAAGAACACTCCGAGACA 60.540 52.381 1.33 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 2148 0.240411 GCTGCAGAGAGGCAACAAAG 59.760 55.0 20.43 0.0 44.40 2.77 R
2114 2701 0.250467 GCTTCTGGACTGAGTTGGCA 60.250 55.0 0.00 0.0 0.00 4.92 R
3163 3752 0.319728 TGCTCTGTCTTCTCCACTGC 59.680 55.0 0.00 0.0 0.00 4.40 R
3347 3946 1.961793 AGGCAACGTTTGTAAGAGCA 58.038 45.0 0.00 0.0 46.39 4.26 R
4796 5856 0.179234 TCTTGCCACGACTTTCACCA 59.821 50.0 0.00 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 104 5.990668 ACCTAAATCTAGACCGCTTGAAAT 58.009 37.500 0.00 0.00 29.96 2.17
197 200 1.544691 TCCTTACAAGCTCTCCACGAC 59.455 52.381 0.00 0.00 0.00 4.34
246 249 0.330604 AGGAGTGCACCATGAGCATT 59.669 50.000 14.63 11.04 44.79 3.56
296 299 1.729470 CGACCTCACTCGATCCAGGG 61.729 65.000 8.19 0.00 35.58 4.45
363 366 0.178998 GCATGGTCCATGAGAGGCAT 60.179 55.000 32.16 0.00 43.81 4.40
367 370 1.419012 TGGTCCATGAGAGGCATCATC 59.581 52.381 0.00 0.00 37.84 2.92
383 387 6.373216 AGGCATCATCCAAAACATCATTTTTG 59.627 34.615 2.04 2.04 43.34 2.44
409 413 6.622833 ATTTTTCCAATGCTTTGAAAGGTG 57.377 33.333 13.58 0.00 34.60 4.00
451 455 2.890945 CCGAAATGTCCAAAACCTCCTT 59.109 45.455 0.00 0.00 0.00 3.36
549 553 3.208747 ACAGAACACACAAGTAAGGGG 57.791 47.619 0.00 0.00 0.00 4.79
565 569 3.211963 GGCATCCACATGGCGACC 61.212 66.667 0.00 0.00 44.96 4.79
584 588 1.139058 CCCTTGGACAGGTTATCTCGG 59.861 57.143 0.00 0.00 42.02 4.63
586 590 0.539986 TTGGACAGGTTATCTCGGGC 59.460 55.000 0.00 0.00 0.00 6.13
597 1161 4.438336 GGTTATCTCGGGCTAAAACTTTGC 60.438 45.833 0.00 0.00 0.00 3.68
623 1187 1.446907 AGATCAGCCACAAGAAAGCG 58.553 50.000 0.00 0.00 0.00 4.68
672 1236 0.832983 AAAGCAATGAGGCCCAGCAA 60.833 50.000 0.00 0.00 0.00 3.91
688 1252 1.296392 CAACTCAGCCCATCCACGA 59.704 57.895 0.00 0.00 0.00 4.35
697 1261 0.179166 CCCATCCACGACAAATTGCG 60.179 55.000 7.92 7.92 0.00 4.85
703 1267 0.655915 CACGACAAATTGCGCACGAA 60.656 50.000 20.57 2.47 0.00 3.85
705 1269 1.327292 CGACAAATTGCGCACGAACC 61.327 55.000 11.12 0.00 0.00 3.62
706 1270 1.001745 GACAAATTGCGCACGAACCC 61.002 55.000 11.12 0.00 0.00 4.11
768 1335 2.750948 TCTAACCTCTGTCAACGCAAC 58.249 47.619 0.00 0.00 0.00 4.17
852 1419 2.287457 TAATCCGACCGTTGAGGCCG 62.287 60.000 0.00 0.00 45.98 6.13
873 1440 4.527583 CCGCTGCCTCTGCCTCTC 62.528 72.222 0.00 0.00 36.33 3.20
899 1466 5.645201 AGAGCCTTTAAACCTCCAAAATCT 58.355 37.500 7.26 0.00 0.00 2.40
1024 1593 2.954020 GATCTCCACCGATTCGCGCA 62.954 60.000 8.75 0.00 39.11 6.09
1048 1617 1.868251 GAGAAGGTACGCGTGCTCG 60.868 63.158 26.14 3.31 40.37 5.03
1096 1667 0.110419 GATCTCATCTCCGCGTCTCG 60.110 60.000 4.92 0.00 38.08 4.04
1109 1680 4.888741 TCTCGTGCGCGCGATCTC 62.889 66.667 41.56 16.86 40.29 2.75
1161 1732 3.365291 CTTGGGATTCGACGCCGGA 62.365 63.158 5.05 0.00 36.24 5.14
1162 1733 2.644555 CTTGGGATTCGACGCCGGAT 62.645 60.000 5.05 0.00 36.54 4.18
1234 1805 5.095490 GGATTTAGTTGGCGATTTGTTCTG 58.905 41.667 0.00 0.00 0.00 3.02
1265 1837 2.042843 TGGCGTTTTTGGGTGGGT 60.043 55.556 0.00 0.00 0.00 4.51
1364 1939 9.700831 AAGATTATATTTTGGGCTCAGTAAAGT 57.299 29.630 0.00 0.00 0.00 2.66
1392 1967 4.853924 ACCCATCGATTTTTGGCATATC 57.146 40.909 0.00 0.00 0.00 1.63
1417 1992 0.253044 TTTTCCTCTCCATCTGGGCG 59.747 55.000 0.00 0.00 36.21 6.13
1429 2004 0.181824 TCTGGGCGGCCCTAAATTAC 59.818 55.000 36.21 10.08 45.70 1.89
1434 2009 0.465642 GCGGCCCTAAATTACCAGCT 60.466 55.000 0.00 0.00 0.00 4.24
1441 2016 4.142381 GCCCTAAATTACCAGCTTCTTGTG 60.142 45.833 0.00 0.00 0.00 3.33
1451 2026 5.815581 ACCAGCTTCTTGTGATGGTTTATA 58.184 37.500 0.00 0.00 41.44 0.98
1452 2027 5.648092 ACCAGCTTCTTGTGATGGTTTATAC 59.352 40.000 0.00 0.00 41.44 1.47
1453 2028 5.882557 CCAGCTTCTTGTGATGGTTTATACT 59.117 40.000 0.00 0.00 0.00 2.12
1454 2029 6.183360 CCAGCTTCTTGTGATGGTTTATACTG 60.183 42.308 0.00 0.00 0.00 2.74
1520 2105 4.037222 TCAACCTGGGCTTCATGAGTATA 58.963 43.478 0.00 0.00 0.00 1.47
1524 2109 6.365970 ACCTGGGCTTCATGAGTATAATAG 57.634 41.667 0.00 0.00 0.00 1.73
1525 2110 5.846714 ACCTGGGCTTCATGAGTATAATAGT 59.153 40.000 0.00 0.00 0.00 2.12
1526 2111 7.016914 ACCTGGGCTTCATGAGTATAATAGTA 58.983 38.462 0.00 0.00 0.00 1.82
1527 2112 7.038941 ACCTGGGCTTCATGAGTATAATAGTAC 60.039 40.741 0.00 0.00 0.00 2.73
1528 2113 7.179338 CCTGGGCTTCATGAGTATAATAGTACT 59.821 40.741 0.00 0.00 37.61 2.73
1529 2114 7.896811 TGGGCTTCATGAGTATAATAGTACTG 58.103 38.462 5.39 0.00 35.14 2.74
1545 2130 0.759346 ACTGCTCTTCCGGTGAAGTT 59.241 50.000 0.00 0.00 46.66 2.66
1548 2133 1.140052 TGCTCTTCCGGTGAAGTTGAA 59.860 47.619 0.00 0.00 46.66 2.69
1563 2148 7.968405 GGTGAAGTTGAACAATAATGGTGTATC 59.032 37.037 0.00 0.00 0.00 2.24
1601 2186 0.392193 CCTTCGCAGCATTCTCAGGT 60.392 55.000 0.00 0.00 0.00 4.00
1632 2217 2.354821 GTGGGTGTTGTCTGACTTTGAC 59.645 50.000 9.51 3.76 35.21 3.18
1762 2347 4.764823 AGTGAAGGAATTTATGTTTCGCCA 59.235 37.500 0.00 0.00 0.00 5.69
1915 2501 7.931015 TGTATCTACCATCTGTTTTCCCTAT 57.069 36.000 0.00 0.00 0.00 2.57
2055 2642 6.671190 TCGAGTAATCAACGAAGTCTTACAA 58.329 36.000 0.00 0.00 45.00 2.41
2109 2696 9.173021 TCAGATTGTGTCTTTGAAAGTTCTTTA 57.827 29.630 4.68 0.00 34.00 1.85
2114 2701 8.106247 TGTGTCTTTGAAAGTTCTTTACAACT 57.894 30.769 4.68 0.00 38.30 3.16
2122 2709 5.500645 AAGTTCTTTACAACTGCCAACTC 57.499 39.130 0.00 0.00 36.69 3.01
2195 2782 6.990349 ACTTTTGCTTGTAAGTGTCTAGCTAA 59.010 34.615 0.00 0.00 35.44 3.09
2202 2789 7.414540 GCTTGTAAGTGTCTAGCTAATTTGCAT 60.415 37.037 14.27 2.44 34.99 3.96
2413 3000 5.506686 AAGTTCTTTTCAAGAGCCAACTC 57.493 39.130 0.00 0.00 43.82 3.01
2422 3009 4.464008 TCAAGAGCCAACTCAAACAATCT 58.536 39.130 0.00 0.00 46.09 2.40
2473 3060 6.597562 AGTAGAGATACAGAGTCACCTTAGG 58.402 44.000 0.00 0.00 0.00 2.69
2528 3115 5.628797 TTATGATCAGGTACAGATTGGCA 57.371 39.130 0.09 0.00 33.75 4.92
2626 3214 4.189231 CCCGTGTTTACCTAATCTTGGAG 58.811 47.826 0.00 0.00 0.00 3.86
2831 3420 2.546795 CCGTGCCCTCATCTATCTTCAC 60.547 54.545 0.00 0.00 0.00 3.18
2909 3498 6.543735 ACAGGTATTTGCTCTACTTTCCTTT 58.456 36.000 0.00 0.00 0.00 3.11
2912 3501 7.174946 CAGGTATTTGCTCTACTTTCCTTTGAA 59.825 37.037 0.00 0.00 0.00 2.69
3089 3678 7.930865 TGAAATGGGTACTTTCCTTTTCATTTG 59.069 33.333 18.49 0.00 45.33 2.32
3138 3727 9.308000 TGGTGAAATAGAATACCACAAATTTCT 57.692 29.630 0.00 0.00 38.23 2.52
3151 3740 8.324163 ACCACAAATTTCTAGTAGCTAACTTG 57.676 34.615 0.00 0.00 39.80 3.16
3153 3742 8.784043 CCACAAATTTCTAGTAGCTAACTTGTT 58.216 33.333 0.00 0.00 39.80 2.83
3154 3743 9.599322 CACAAATTTCTAGTAGCTAACTTGTTG 57.401 33.333 0.00 1.04 39.80 3.33
3158 3747 7.979444 TTTCTAGTAGCTAACTTGTTGCAAT 57.021 32.000 0.59 0.00 39.80 3.56
3159 3748 6.968131 TCTAGTAGCTAACTTGTTGCAATG 57.032 37.500 0.59 0.00 39.80 2.82
3161 3750 6.934645 TCTAGTAGCTAACTTGTTGCAATGTT 59.065 34.615 0.59 11.06 39.80 2.71
3163 3752 6.208644 AGTAGCTAACTTGTTGCAATGTTTG 58.791 36.000 16.50 15.47 33.35 2.93
3270 3869 4.363138 CTTTTGAAGCCAAAGAACACTCC 58.637 43.478 0.00 0.00 42.55 3.85
3276 3875 1.540363 GCCAAAGAACACTCCGAGACA 60.540 52.381 1.33 0.00 0.00 3.41
3292 3891 4.275196 CCGAGACATATCGAAGGTAACTCA 59.725 45.833 0.00 0.00 45.58 3.41
3347 3946 4.319333 GCGATTTGCATCTCTTGATTCGAT 60.319 41.667 0.00 0.00 45.45 3.59
3370 3972 1.335496 TCTTACAAACGTTGCCTTGCC 59.665 47.619 0.00 0.00 0.00 4.52
3487 4095 0.458669 CAGTTGCATTGATCAGGGCC 59.541 55.000 15.47 0.00 0.00 5.80
3618 4231 9.902684 AAATCTTCATGATTGAGAGATTACACT 57.097 29.630 16.31 2.87 43.99 3.55
3619 4232 9.902684 AATCTTCATGATTGAGAGATTACACTT 57.097 29.630 14.99 0.00 43.20 3.16
3622 4235 9.814899 CTTCATGATTGAGAGATTACACTTAGT 57.185 33.333 0.00 0.00 32.27 2.24
3696 4309 2.805099 CTGTCTCTCAAACTGCCTTGTC 59.195 50.000 0.00 0.00 0.00 3.18
3749 4362 0.733729 TCCCGTTGAAACCGTTTGTG 59.266 50.000 0.00 0.00 0.00 3.33
3836 4449 6.867662 ATAGTTCTAGTTTATGTGGCATGC 57.132 37.500 9.90 9.90 0.00 4.06
3849 4462 1.975407 GCATGCCCTGTGCTGAACT 60.975 57.895 6.36 0.00 42.00 3.01
3867 4480 6.426937 GCTGAACTTCTGTCTTACAAATGGTA 59.573 38.462 0.00 0.00 0.00 3.25
3974 4587 2.281208 CAAAACGCCGACCCCTCA 60.281 61.111 0.00 0.00 0.00 3.86
3986 4599 2.579201 CCCTCAGGCGTGTACAGG 59.421 66.667 11.20 11.20 0.00 4.00
4004 4617 1.142097 GGGGTAGAGCTTGTCTCGC 59.858 63.158 0.00 0.00 46.44 5.03
4019 4632 4.711949 CGCCTGCTCCTGTGCCTT 62.712 66.667 0.00 0.00 0.00 4.35
4034 4647 2.612760 CCTTGATCCAGGGCTCTGA 58.387 57.895 17.43 0.97 43.49 3.27
4036 4649 1.202330 CTTGATCCAGGGCTCTGAGT 58.798 55.000 17.43 2.09 43.49 3.41
4037 4650 1.558756 CTTGATCCAGGGCTCTGAGTT 59.441 52.381 17.43 0.00 43.49 3.01
4038 4651 2.550277 TGATCCAGGGCTCTGAGTTA 57.450 50.000 17.43 0.00 43.49 2.24
4039 4652 2.832838 TGATCCAGGGCTCTGAGTTAA 58.167 47.619 17.43 0.00 43.49 2.01
4040 4653 2.501723 TGATCCAGGGCTCTGAGTTAAC 59.498 50.000 17.43 0.00 43.49 2.01
4042 4655 2.180276 TCCAGGGCTCTGAGTTAACTC 58.820 52.381 25.73 25.73 43.49 3.01
4298 4912 0.108520 GTTCCCGCAGTTCGTATCCA 60.109 55.000 0.00 0.00 36.19 3.41
4337 4953 7.657354 TGTTATTATTCATTCAGGTGATCGGAG 59.343 37.037 0.00 0.00 0.00 4.63
4350 4968 1.689273 GATCGGAGTGATAGCCAAGGT 59.311 52.381 0.00 0.00 37.47 3.50
4379 4997 7.622893 ATTAAGAAATCTCTTTGGACAGAGC 57.377 36.000 0.00 0.00 42.17 4.09
4380 4998 4.630644 AGAAATCTCTTTGGACAGAGCA 57.369 40.909 0.00 0.00 40.33 4.26
4391 5009 2.224137 TGGACAGAGCAGACTTGTCAAG 60.224 50.000 11.17 11.17 0.00 3.02
4400 5018 2.689983 CAGACTTGTCAAGCCACCTTTT 59.310 45.455 12.66 0.00 0.00 2.27
4401 5019 3.131046 CAGACTTGTCAAGCCACCTTTTT 59.869 43.478 12.66 0.00 0.00 1.94
4451 5087 6.834168 TTTCTTATGAAAATCACCACCCTC 57.166 37.500 1.49 0.00 39.02 4.30
4452 5088 5.779241 TCTTATGAAAATCACCACCCTCT 57.221 39.130 0.00 0.00 0.00 3.69
4453 5089 6.139679 TCTTATGAAAATCACCACCCTCTT 57.860 37.500 0.00 0.00 0.00 2.85
4454 5090 6.552008 TCTTATGAAAATCACCACCCTCTTT 58.448 36.000 0.00 0.00 0.00 2.52
4455 5091 6.434028 TCTTATGAAAATCACCACCCTCTTTG 59.566 38.462 0.00 0.00 0.00 2.77
4456 5092 3.909732 TGAAAATCACCACCCTCTTTGT 58.090 40.909 0.00 0.00 0.00 2.83
4457 5093 3.888930 TGAAAATCACCACCCTCTTTGTC 59.111 43.478 0.00 0.00 0.00 3.18
4458 5094 3.884037 AAATCACCACCCTCTTTGTCT 57.116 42.857 0.00 0.00 0.00 3.41
4459 5095 3.884037 AATCACCACCCTCTTTGTCTT 57.116 42.857 0.00 0.00 0.00 3.01
4460 5096 3.884037 ATCACCACCCTCTTTGTCTTT 57.116 42.857 0.00 0.00 0.00 2.52
4478 5114 7.801716 TGTCTTTATTGACTTTGCAAGTACT 57.198 32.000 0.00 0.00 43.03 2.73
4479 5115 8.896320 TGTCTTTATTGACTTTGCAAGTACTA 57.104 30.769 0.00 0.00 43.03 1.82
4521 5157 0.243636 CCACCTTTGCGGACAATTCC 59.756 55.000 0.00 0.00 38.77 3.01
4523 5159 1.339610 CACCTTTGCGGACAATTCCAA 59.660 47.619 0.00 0.00 43.00 3.53
4526 5162 0.676736 TTTGCGGACAATTCCAACCC 59.323 50.000 0.00 0.00 43.00 4.11
4532 5175 2.288152 CGGACAATTCCAACCCAGTTTG 60.288 50.000 0.00 0.00 43.00 2.93
4535 5178 1.415659 CAATTCCAACCCAGTTTGCCA 59.584 47.619 0.00 0.00 0.00 4.92
4558 5201 9.597999 GCCACAAAATAAATTCAGAATGTTTTC 57.402 29.630 0.00 0.00 37.40 2.29
4575 5218 7.686438 ATGTTTTCATTTTATTTTGGGGCTC 57.314 32.000 0.00 0.00 37.19 4.70
4576 5219 5.698545 TGTTTTCATTTTATTTTGGGGCTCG 59.301 36.000 0.00 0.00 0.00 5.03
4578 5221 4.448537 TCATTTTATTTTGGGGCTCGTG 57.551 40.909 0.00 0.00 0.00 4.35
4598 5658 3.432252 GTGTAGTTCAATGACCTCCAACG 59.568 47.826 0.00 0.00 0.00 4.10
4636 5696 7.546778 TTCAAACAAAACTGAATAAAAGGCC 57.453 32.000 0.00 0.00 0.00 5.19
4644 5704 7.549615 AAACTGAATAAAAGGCCGATACTAC 57.450 36.000 0.00 0.00 0.00 2.73
4670 5730 3.963374 TCTACACCTGAGCTCATATGCTT 59.037 43.478 18.63 6.32 44.17 3.91
4675 5735 2.104451 CCTGAGCTCATATGCTTCTGGT 59.896 50.000 18.63 0.00 44.17 4.00
4798 5858 7.837202 AAATTGCATTATGAAGTCACATTGG 57.163 32.000 0.00 0.00 0.00 3.16
4799 5859 5.981088 TTGCATTATGAAGTCACATTGGT 57.019 34.783 0.00 0.00 0.00 3.67
4800 5860 5.313520 TGCATTATGAAGTCACATTGGTG 57.686 39.130 0.00 0.00 46.66 4.17
4819 5879 3.243401 GGTGAAAGTCGTGGCAAGAAAAT 60.243 43.478 4.28 0.00 0.00 1.82
4835 5895 7.386025 GGCAAGAAAATACAAAATCAGAGCTTT 59.614 33.333 0.00 0.00 0.00 3.51
4882 5942 7.961325 TCAATTTTCTTTTTACCATGCCTTC 57.039 32.000 0.00 0.00 0.00 3.46
4890 5950 2.142356 TACCATGCCTTCCACCAATG 57.858 50.000 0.00 0.00 0.00 2.82
4891 5951 0.114954 ACCATGCCTTCCACCAATGT 59.885 50.000 0.00 0.00 0.00 2.71
4892 5952 0.819582 CCATGCCTTCCACCAATGTC 59.180 55.000 0.00 0.00 0.00 3.06
4934 5994 6.426980 TTGCATGCACAACAAACATTTTTA 57.573 29.167 22.58 0.00 0.00 1.52
4940 6000 9.419737 CATGCACAACAAACATTTTTAAAGTAC 57.580 29.630 0.00 0.00 0.00 2.73
4942 6002 7.328737 TGCACAACAAACATTTTTAAAGTACGT 59.671 29.630 0.00 0.00 0.00 3.57
4943 6003 8.163516 GCACAACAAACATTTTTAAAGTACGTT 58.836 29.630 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 104 4.141482 ACTCAACTTAGGGACTTCTTTGCA 60.141 41.667 0.00 0.00 41.75 4.08
197 200 1.402588 CCTGATGCTCCTCGATCATCG 60.403 57.143 0.00 0.00 37.82 3.84
246 249 3.521531 TCAATGGAAGGTACTATGTGCCA 59.478 43.478 7.51 0.00 40.76 4.92
383 387 8.069574 CACCTTTCAAAGCATTGGAAAAATAAC 58.930 33.333 1.24 0.00 33.62 1.89
451 455 3.371034 TCTAACGTGGGGAAGATCATCA 58.629 45.455 0.00 0.00 0.00 3.07
549 553 3.211963 GGGTCGCCATGTGGATGC 61.212 66.667 2.55 0.00 37.39 3.91
584 588 4.932146 TCTTCAACAGCAAAGTTTTAGCC 58.068 39.130 0.00 0.00 0.00 3.93
586 590 7.848716 CTGATCTTCAACAGCAAAGTTTTAG 57.151 36.000 0.00 0.00 0.00 1.85
597 1161 3.405831 TCTTGTGGCTGATCTTCAACAG 58.594 45.455 0.00 0.00 37.22 3.16
623 1187 2.793278 AAACACCTCGGAATTTGCAC 57.207 45.000 0.00 0.00 0.00 4.57
672 1236 1.480212 TTGTCGTGGATGGGCTGAGT 61.480 55.000 0.00 0.00 0.00 3.41
688 1252 1.007849 GGGTTCGTGCGCAATTTGT 60.008 52.632 14.00 0.00 0.00 2.83
703 1267 3.617284 AGTTGAGAAACTGAAAACGGGT 58.383 40.909 0.00 0.00 0.00 5.28
705 1269 4.318546 CCGTAGTTGAGAAACTGAAAACGG 60.319 45.833 13.28 13.28 41.67 4.44
706 1270 4.318546 CCCGTAGTTGAGAAACTGAAAACG 60.319 45.833 1.42 3.61 33.34 3.60
708 1272 4.131596 CCCCGTAGTTGAGAAACTGAAAA 58.868 43.478 1.42 0.00 34.37 2.29
768 1335 4.831307 CGGTCGAGAGCCGTTCGG 62.831 72.222 6.90 6.90 42.85 4.30
872 1439 2.714250 TGGAGGTTTAAAGGCTCTTGGA 59.286 45.455 0.00 0.00 0.00 3.53
873 1440 3.154827 TGGAGGTTTAAAGGCTCTTGG 57.845 47.619 0.00 0.00 0.00 3.61
1024 1593 2.762234 CGCGTACCTTCTCCTCGCT 61.762 63.158 0.00 0.00 43.78 4.93
1133 1704 1.152963 AATCCCAAGAATCCGCCGG 60.153 57.895 0.00 0.00 0.00 6.13
1161 1732 2.746277 GAACAACTGGGCGCCGAT 60.746 61.111 22.54 4.88 0.00 4.18
1171 1742 4.660938 GCCGCCCCAGGAACAACT 62.661 66.667 0.00 0.00 0.00 3.16
1191 1762 2.179267 CGCTAGAGCACGAGCACA 59.821 61.111 15.65 0.00 43.19 4.57
1234 1805 2.361737 GCCAGGGGGAAGCAGAAC 60.362 66.667 0.00 0.00 35.59 3.01
1265 1837 2.816337 GCTAGCAAACCCTAACCACCAA 60.816 50.000 10.63 0.00 0.00 3.67
1364 1939 4.626042 CCAAAAATCGATGGGTTTGTTCA 58.374 39.130 19.79 0.00 32.87 3.18
1392 1967 4.384647 CCCAGATGGAGAGGAAAACTAAGG 60.385 50.000 0.00 0.00 37.39 2.69
1417 1992 3.298686 AGAAGCTGGTAATTTAGGGCC 57.701 47.619 0.00 0.00 0.00 5.80
1429 2004 5.882557 AGTATAAACCATCACAAGAAGCTGG 59.117 40.000 0.00 0.00 0.00 4.85
1434 2009 9.161629 CATGTACAGTATAAACCATCACAAGAA 57.838 33.333 0.33 0.00 0.00 2.52
1451 2026 6.886459 AGATGCATCTTTTAACCATGTACAGT 59.114 34.615 23.75 0.00 31.97 3.55
1452 2027 7.325660 AGATGCATCTTTTAACCATGTACAG 57.674 36.000 23.75 0.00 31.97 2.74
1453 2028 7.176515 ACAAGATGCATCTTTTAACCATGTACA 59.823 33.333 34.17 0.00 44.28 2.90
1454 2029 7.485913 CACAAGATGCATCTTTTAACCATGTAC 59.514 37.037 34.17 1.01 44.28 2.90
1520 2105 3.362706 TCACCGGAAGAGCAGTACTATT 58.637 45.455 9.46 0.00 30.75 1.73
1545 2130 7.812191 GCAACAAAGATACACCATTATTGTTCA 59.188 33.333 0.00 0.00 35.35 3.18
1548 2133 6.437162 AGGCAACAAAGATACACCATTATTGT 59.563 34.615 0.00 0.00 41.41 2.71
1563 2148 0.240411 GCTGCAGAGAGGCAACAAAG 59.760 55.000 20.43 0.00 44.40 2.77
1601 2186 2.448582 AACACCCACCGCTTCTCCA 61.449 57.895 0.00 0.00 0.00 3.86
1632 2217 2.268076 CCCAAGTGCCTTCCCAACG 61.268 63.158 0.00 0.00 0.00 4.10
1737 2322 5.022021 GCGAAACATAAATTCCTTCACTCG 58.978 41.667 0.00 0.00 0.00 4.18
2004 2591 4.851639 AACAATTCCAGACTCCTGCTAT 57.148 40.909 0.00 0.00 39.07 2.97
2006 2593 4.640771 TTAACAATTCCAGACTCCTGCT 57.359 40.909 0.00 0.00 39.07 4.24
2070 2657 8.128322 AGACACAATCTGACTACTCTGTTTAT 57.872 34.615 0.00 0.00 35.81 1.40
2071 2658 7.526142 AGACACAATCTGACTACTCTGTTTA 57.474 36.000 0.00 0.00 35.81 2.01
2114 2701 0.250467 GCTTCTGGACTGAGTTGGCA 60.250 55.000 0.00 0.00 0.00 4.92
2122 2709 8.807118 TGGTAGATATAATAAGCTTCTGGACTG 58.193 37.037 0.00 0.00 0.00 3.51
2165 2752 6.919721 AGACACTTACAAGCAAAAGTCAAAA 58.080 32.000 0.00 0.00 33.72 2.44
2166 2753 6.509418 AGACACTTACAAGCAAAAGTCAAA 57.491 33.333 0.00 0.00 33.72 2.69
2177 2764 7.364522 TGCAAATTAGCTAGACACTTACAAG 57.635 36.000 0.00 0.00 34.99 3.16
2413 3000 2.507484 TGCTCCACCTGAGATTGTTTG 58.493 47.619 0.00 0.00 44.42 2.93
2422 3009 1.204704 CGTAACTGATGCTCCACCTGA 59.795 52.381 0.00 0.00 0.00 3.86
2473 3060 0.668535 GGCGAAGAATATTGGGGTGC 59.331 55.000 0.00 0.00 0.00 5.01
2528 3115 9.832445 AATAATGATTCTCCGTGTTATAGTTGT 57.168 29.630 0.00 0.00 0.00 3.32
2626 3214 1.138247 CTCTCCTTTTGCGGCATGC 59.862 57.895 9.90 9.90 46.70 4.06
2760 3348 9.981460 AGAAAAACAAGGGAAGTTCAGATATAT 57.019 29.630 5.01 0.00 0.00 0.86
2831 3420 1.209128 GATGTATCACGTGCTTCCCG 58.791 55.000 11.67 0.00 0.00 5.14
2909 3498 8.623903 GCATACTGTTCCAGATCATAAAATTCA 58.376 33.333 0.00 0.00 35.18 2.57
2912 3501 8.216423 AGAGCATACTGTTCCAGATCATAAAAT 58.784 33.333 0.00 0.00 35.18 1.82
3137 3726 6.727824 ACATTGCAACAAGTTAGCTACTAG 57.272 37.500 0.00 0.00 35.54 2.57
3138 3727 7.359595 CAAACATTGCAACAAGTTAGCTACTA 58.640 34.615 0.00 0.00 35.54 1.82
3139 3728 6.208644 CAAACATTGCAACAAGTTAGCTACT 58.791 36.000 0.00 0.00 39.32 2.57
3140 3729 6.438327 CAAACATTGCAACAAGTTAGCTAC 57.562 37.500 0.00 0.00 0.00 3.58
3158 3747 2.170397 TCTGTCTTCTCCACTGCAAACA 59.830 45.455 0.00 0.00 0.00 2.83
3159 3748 2.805099 CTCTGTCTTCTCCACTGCAAAC 59.195 50.000 0.00 0.00 0.00 2.93
3161 3750 1.270518 GCTCTGTCTTCTCCACTGCAA 60.271 52.381 0.00 0.00 0.00 4.08
3163 3752 0.319728 TGCTCTGTCTTCTCCACTGC 59.680 55.000 0.00 0.00 0.00 4.40
3270 3869 5.419760 TGAGTTACCTTCGATATGTCTCG 57.580 43.478 0.00 0.00 39.99 4.04
3276 3875 6.863645 CGTTCATCATGAGTTACCTTCGATAT 59.136 38.462 0.09 0.00 0.00 1.63
3292 3891 9.599866 TCATAGTAAAATCAGTTCGTTCATCAT 57.400 29.630 0.00 0.00 0.00 2.45
3347 3946 1.961793 AGGCAACGTTTGTAAGAGCA 58.038 45.000 0.00 0.00 46.39 4.26
3609 4222 9.331282 GCATGGATTAGAAACTAAGTGTAATCT 57.669 33.333 0.00 0.00 0.00 2.40
3610 4223 9.109393 TGCATGGATTAGAAACTAAGTGTAATC 57.891 33.333 0.00 0.00 0.00 1.75
3612 4225 8.726988 GTTGCATGGATTAGAAACTAAGTGTAA 58.273 33.333 0.00 0.00 0.00 2.41
3613 4226 8.100791 AGTTGCATGGATTAGAAACTAAGTGTA 58.899 33.333 0.00 0.00 0.00 2.90
3614 4227 6.942576 AGTTGCATGGATTAGAAACTAAGTGT 59.057 34.615 0.00 0.00 0.00 3.55
3615 4228 7.335422 AGAGTTGCATGGATTAGAAACTAAGTG 59.665 37.037 0.00 0.00 0.00 3.16
3616 4229 7.398024 AGAGTTGCATGGATTAGAAACTAAGT 58.602 34.615 0.00 0.00 0.00 2.24
3617 4230 7.856145 AGAGTTGCATGGATTAGAAACTAAG 57.144 36.000 0.00 0.00 0.00 2.18
3618 4231 8.540388 AGTAGAGTTGCATGGATTAGAAACTAA 58.460 33.333 0.00 0.00 0.00 2.24
3619 4232 8.079211 AGTAGAGTTGCATGGATTAGAAACTA 57.921 34.615 0.00 0.00 0.00 2.24
3620 4233 6.951971 AGTAGAGTTGCATGGATTAGAAACT 58.048 36.000 0.00 0.00 0.00 2.66
3621 4234 7.617041 AAGTAGAGTTGCATGGATTAGAAAC 57.383 36.000 0.00 0.00 0.00 2.78
3622 4235 7.495934 GCTAAGTAGAGTTGCATGGATTAGAAA 59.504 37.037 5.88 0.00 0.00 2.52
3623 4236 6.986817 GCTAAGTAGAGTTGCATGGATTAGAA 59.013 38.462 5.88 0.00 0.00 2.10
3624 4237 6.325028 AGCTAAGTAGAGTTGCATGGATTAGA 59.675 38.462 5.88 0.00 0.00 2.10
3625 4238 6.520272 AGCTAAGTAGAGTTGCATGGATTAG 58.480 40.000 0.00 0.00 0.00 1.73
3626 4239 6.463049 GGAGCTAAGTAGAGTTGCATGGATTA 60.463 42.308 0.00 0.00 0.00 1.75
3627 4240 5.363939 GAGCTAAGTAGAGTTGCATGGATT 58.636 41.667 0.00 0.00 0.00 3.01
3628 4241 4.202305 GGAGCTAAGTAGAGTTGCATGGAT 60.202 45.833 0.00 0.00 0.00 3.41
3696 4309 8.674607 GTCCACTTTTACTATCCTGTATTTTGG 58.325 37.037 0.00 0.00 0.00 3.28
3749 4362 1.446966 GTCCTTCGCAGCAGGAGAC 60.447 63.158 1.55 0.00 41.36 3.36
3836 4449 1.071385 AGACAGAAGTTCAGCACAGGG 59.929 52.381 5.50 0.00 0.00 4.45
3849 4462 8.458573 ACAAACATACCATTTGTAAGACAGAA 57.541 30.769 1.40 0.00 45.99 3.02
3867 4480 2.483538 GCAACAAGCCCAGAACAAACAT 60.484 45.455 0.00 0.00 37.23 2.71
3974 4587 1.684734 CTACCCCCTGTACACGCCT 60.685 63.158 0.00 0.00 0.00 5.52
3986 4599 1.142097 GCGAGACAAGCTCTACCCC 59.858 63.158 0.00 0.00 41.66 4.95
4004 4617 0.747283 GATCAAGGCACAGGAGCAGG 60.747 60.000 0.00 0.00 35.83 4.85
4019 4632 2.501723 GTTAACTCAGAGCCCTGGATCA 59.498 50.000 4.01 0.00 40.76 2.92
4033 4646 9.979270 CAGATATGACAACAATTGAGTTAACTC 57.021 33.333 25.73 25.73 43.15 3.01
4034 4647 8.950210 CCAGATATGACAACAATTGAGTTAACT 58.050 33.333 13.59 8.13 0.00 2.24
4036 4649 7.611467 AGCCAGATATGACAACAATTGAGTTAA 59.389 33.333 13.59 3.93 0.00 2.01
4037 4650 7.112122 AGCCAGATATGACAACAATTGAGTTA 58.888 34.615 13.59 7.52 0.00 2.24
4038 4651 5.948162 AGCCAGATATGACAACAATTGAGTT 59.052 36.000 13.59 0.00 0.00 3.01
4039 4652 5.503927 AGCCAGATATGACAACAATTGAGT 58.496 37.500 13.59 10.18 0.00 3.41
4040 4653 6.446781 AAGCCAGATATGACAACAATTGAG 57.553 37.500 13.59 6.78 0.00 3.02
4042 4655 5.740569 CGAAAGCCAGATATGACAACAATTG 59.259 40.000 3.24 3.24 0.00 2.32
4043 4656 5.415701 ACGAAAGCCAGATATGACAACAATT 59.584 36.000 0.00 0.00 0.00 2.32
4337 4953 6.349300 TCTTAATCTGAACCTTGGCTATCAC 58.651 40.000 0.00 0.00 0.00 3.06
4377 4995 0.536006 GGTGGCTTGACAAGTCTGCT 60.536 55.000 19.96 0.00 33.26 4.24
4379 4997 1.972872 AAGGTGGCTTGACAAGTCTG 58.027 50.000 19.96 0.00 33.26 3.51
4380 4998 2.736670 AAAGGTGGCTTGACAAGTCT 57.263 45.000 19.96 8.55 33.26 3.24
4400 5018 6.655003 AGTTTCTTTCGCTGGATCATAAGAAA 59.345 34.615 0.00 0.00 38.53 2.52
4401 5019 6.173339 AGTTTCTTTCGCTGGATCATAAGAA 58.827 36.000 0.00 0.00 31.79 2.52
4402 5020 5.734720 AGTTTCTTTCGCTGGATCATAAGA 58.265 37.500 0.00 0.00 0.00 2.10
4403 5021 6.428385 AAGTTTCTTTCGCTGGATCATAAG 57.572 37.500 0.00 0.00 0.00 1.73
4404 5022 6.817765 AAAGTTTCTTTCGCTGGATCATAA 57.182 33.333 0.00 0.00 0.00 1.90
4405 5023 6.817765 AAAAGTTTCTTTCGCTGGATCATA 57.182 33.333 0.00 0.00 0.00 2.15
4434 5070 4.482990 ACAAAGAGGGTGGTGATTTTCAT 58.517 39.130 0.00 0.00 0.00 2.57
4521 5157 2.393271 TTTTGTGGCAAACTGGGTTG 57.607 45.000 0.00 0.00 0.00 3.77
4523 5159 4.762289 TTTATTTTGTGGCAAACTGGGT 57.238 36.364 0.00 0.00 0.00 4.51
4526 5162 7.712264 TCTGAATTTATTTTGTGGCAAACTG 57.288 32.000 0.00 0.00 0.00 3.16
4532 5175 9.597999 GAAAACATTCTGAATTTATTTTGTGGC 57.402 29.630 15.86 4.53 0.00 5.01
4558 5201 4.186856 ACACGAGCCCCAAAATAAAATG 57.813 40.909 0.00 0.00 0.00 2.32
4560 5203 4.400120 ACTACACGAGCCCCAAAATAAAA 58.600 39.130 0.00 0.00 0.00 1.52
4564 5207 2.224670 TGAACTACACGAGCCCCAAAAT 60.225 45.455 0.00 0.00 0.00 1.82
4569 5212 1.066430 TCATTGAACTACACGAGCCCC 60.066 52.381 0.00 0.00 0.00 5.80
4570 5213 2.000447 GTCATTGAACTACACGAGCCC 59.000 52.381 0.00 0.00 0.00 5.19
4571 5214 2.000447 GGTCATTGAACTACACGAGCC 59.000 52.381 0.00 0.00 0.00 4.70
4572 5215 2.924290 GAGGTCATTGAACTACACGAGC 59.076 50.000 3.70 0.00 25.20 5.03
4573 5216 3.056821 TGGAGGTCATTGAACTACACGAG 60.057 47.826 12.80 0.00 34.95 4.18
4575 5218 3.313012 TGGAGGTCATTGAACTACACG 57.687 47.619 12.80 0.00 34.95 4.49
4576 5219 3.432252 CGTTGGAGGTCATTGAACTACAC 59.568 47.826 16.41 10.52 40.29 2.90
4578 5221 3.921677 TCGTTGGAGGTCATTGAACTAC 58.078 45.455 7.01 7.01 29.25 2.73
4636 5696 5.505985 GCTCAGGTGTAGAAAGGTAGTATCG 60.506 48.000 0.00 0.00 0.00 2.92
4644 5704 3.902881 ATGAGCTCAGGTGTAGAAAGG 57.097 47.619 22.96 0.00 0.00 3.11
4742 5802 7.651704 GCACAACAAACATTCCTTAAAGTATGT 59.348 33.333 0.00 0.00 32.89 2.29
4754 5814 4.533225 TTTGCATGCACAACAAACATTC 57.467 36.364 22.58 0.00 0.00 2.67
4791 5851 1.334960 GCCACGACTTTCACCAATGTG 60.335 52.381 0.00 0.00 44.18 3.21
4792 5852 0.951558 GCCACGACTTTCACCAATGT 59.048 50.000 0.00 0.00 0.00 2.71
4793 5853 0.950836 TGCCACGACTTTCACCAATG 59.049 50.000 0.00 0.00 0.00 2.82
4794 5854 1.608590 CTTGCCACGACTTTCACCAAT 59.391 47.619 0.00 0.00 0.00 3.16
4795 5855 1.021202 CTTGCCACGACTTTCACCAA 58.979 50.000 0.00 0.00 0.00 3.67
4796 5856 0.179234 TCTTGCCACGACTTTCACCA 59.821 50.000 0.00 0.00 0.00 4.17
4797 5857 1.305201 TTCTTGCCACGACTTTCACC 58.695 50.000 0.00 0.00 0.00 4.02
4798 5858 3.414549 TTTTCTTGCCACGACTTTCAC 57.585 42.857 0.00 0.00 0.00 3.18
4799 5859 4.576873 TGTATTTTCTTGCCACGACTTTCA 59.423 37.500 0.00 0.00 0.00 2.69
4800 5860 5.103290 TGTATTTTCTTGCCACGACTTTC 57.897 39.130 0.00 0.00 0.00 2.62
4801 5861 5.508200 TTGTATTTTCTTGCCACGACTTT 57.492 34.783 0.00 0.00 0.00 2.66
4802 5862 5.508200 TTTGTATTTTCTTGCCACGACTT 57.492 34.783 0.00 0.00 0.00 3.01
4803 5863 5.508200 TTTTGTATTTTCTTGCCACGACT 57.492 34.783 0.00 0.00 0.00 4.18
4804 5864 5.918011 TGATTTTGTATTTTCTTGCCACGAC 59.082 36.000 0.00 0.00 0.00 4.34
4805 5865 6.016693 TCTGATTTTGTATTTTCTTGCCACGA 60.017 34.615 0.00 0.00 0.00 4.35
4806 5866 6.148948 TCTGATTTTGTATTTTCTTGCCACG 58.851 36.000 0.00 0.00 0.00 4.94
4807 5867 6.089954 GCTCTGATTTTGTATTTTCTTGCCAC 59.910 38.462 0.00 0.00 0.00 5.01
4819 5879 9.709495 AATGCATTTTAAAGCTCTGATTTTGTA 57.291 25.926 5.99 0.00 0.00 2.41
4835 5895 9.486497 TTGATGCTTACTTTCAAATGCATTTTA 57.514 25.926 21.95 11.99 40.58 1.52
4876 5936 0.605319 GACGACATTGGTGGAAGGCA 60.605 55.000 0.00 0.00 0.00 4.75
4882 5942 3.501828 TCAAGAAATGACGACATTGGTGG 59.498 43.478 13.68 2.75 44.67 4.61
4971 6031 2.752121 AGCTCATATGCTCATGACGTG 58.248 47.619 0.00 0.00 39.34 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.