Multiple sequence alignment - TraesCS3B01G125100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G125100 chr3B 100.000 2985 0 0 1 2985 99172788 99169804 0.000000e+00 5513.0
1 TraesCS3B01G125100 chr3B 80.460 87 13 4 2895 2979 584977221 584977137 2.480000e-06 63.9
2 TraesCS3B01G125100 chr3D 90.533 1859 69 33 473 2299 61704299 61702516 0.000000e+00 2359.0
3 TraesCS3B01G125100 chr3D 86.146 397 21 18 65 457 61704652 61704286 6.000000e-107 398.0
4 TraesCS3B01G125100 chr3A 86.031 2255 117 76 359 2526 70731503 70729360 0.000000e+00 2237.0
5 TraesCS3B01G125100 chr3A 88.818 313 22 5 65 374 70731819 70731517 3.630000e-99 372.0
6 TraesCS3B01G125100 chr3A 83.478 115 11 8 2878 2985 737677885 737677998 1.890000e-17 100.0
7 TraesCS3B01G125100 chr6A 87.778 180 18 4 1268 1444 520355710 520355532 1.080000e-49 207.0
8 TraesCS3B01G125100 chr6A 79.130 115 15 7 2878 2985 485328546 485328434 1.480000e-08 71.3
9 TraesCS3B01G125100 chr6D 86.111 180 21 3 1268 1444 378379440 378379262 1.090000e-44 191.0
10 TraesCS3B01G125100 chr5A 89.032 155 15 2 1264 1417 467585838 467585991 1.090000e-44 191.0
11 TraesCS3B01G125100 chr6B 85.556 180 22 3 1268 1444 564993598 564993420 5.080000e-43 185.0
12 TraesCS3B01G125100 chr7D 84.699 183 22 6 1268 1446 174992614 174992794 8.500000e-41 178.0
13 TraesCS3B01G125100 chr7D 75.630 238 38 18 2753 2974 2722279 2722046 1.890000e-17 100.0
14 TraesCS3B01G125100 chr7B 85.632 174 20 5 1267 1436 140652906 140653078 8.500000e-41 178.0
15 TraesCS3B01G125100 chr7A 85.000 180 21 6 1268 1443 177136164 177136341 8.500000e-41 178.0
16 TraesCS3B01G125100 chr7A 76.449 276 44 19 2723 2979 5476589 5476316 2.410000e-26 130.0
17 TraesCS3B01G125100 chr2A 72.900 369 55 32 2654 2985 16280002 16280362 5.300000e-13 86.1
18 TraesCS3B01G125100 chr2D 90.000 60 6 0 2926 2985 32282212 32282153 8.870000e-11 78.7
19 TraesCS3B01G125100 chr2D 74.641 209 36 14 2781 2974 346006390 346006184 3.190000e-10 76.8
20 TraesCS3B01G125100 chr5D 87.692 65 6 2 2917 2979 556707251 556707315 1.150000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G125100 chr3B 99169804 99172788 2984 True 5513.0 5513 100.0000 1 2985 1 chr3B.!!$R1 2984
1 TraesCS3B01G125100 chr3D 61702516 61704652 2136 True 1378.5 2359 88.3395 65 2299 2 chr3D.!!$R1 2234
2 TraesCS3B01G125100 chr3A 70729360 70731819 2459 True 1304.5 2237 87.4245 65 2526 2 chr3A.!!$R1 2461

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.030369 CCGAGGAAGGTTATCGACGG 59.97 60.0 0.0 0.0 38.72 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2091 0.104986 AGGATGGATGGATGGACGGA 60.105 55.0 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.769688 TCGTCATGCATCTCCATTAAACT 58.230 39.130 0.00 0.00 0.00 2.66
23 24 4.571984 TCGTCATGCATCTCCATTAAACTG 59.428 41.667 0.00 0.00 0.00 3.16
24 25 4.604976 GTCATGCATCTCCATTAAACTGC 58.395 43.478 0.00 0.00 0.00 4.40
25 26 3.313249 TCATGCATCTCCATTAAACTGCG 59.687 43.478 0.00 0.00 32.42 5.18
26 27 2.016318 TGCATCTCCATTAAACTGCGG 58.984 47.619 0.00 0.00 32.42 5.69
27 28 1.268743 GCATCTCCATTAAACTGCGGC 60.269 52.381 0.00 0.00 0.00 6.53
28 29 1.334869 CATCTCCATTAAACTGCGGCC 59.665 52.381 0.00 0.00 0.00 6.13
29 30 0.742990 TCTCCATTAAACTGCGGCCG 60.743 55.000 24.05 24.05 0.00 6.13
30 31 0.742990 CTCCATTAAACTGCGGCCGA 60.743 55.000 33.48 13.59 0.00 5.54
31 32 0.742990 TCCATTAAACTGCGGCCGAG 60.743 55.000 33.48 24.65 0.00 4.63
32 33 1.714899 CCATTAAACTGCGGCCGAGG 61.715 60.000 33.48 22.46 0.00 4.63
33 34 0.742990 CATTAAACTGCGGCCGAGGA 60.743 55.000 33.48 10.92 0.00 3.71
34 35 0.035820 ATTAAACTGCGGCCGAGGAA 60.036 50.000 33.48 17.66 0.00 3.36
35 36 0.672401 TTAAACTGCGGCCGAGGAAG 60.672 55.000 33.48 21.55 0.00 3.46
36 37 2.515996 TAAACTGCGGCCGAGGAAGG 62.516 60.000 33.48 13.26 0.00 3.46
38 39 4.394712 CTGCGGCCGAGGAAGGTT 62.395 66.667 33.48 0.00 0.00 3.50
39 40 2.998480 TGCGGCCGAGGAAGGTTA 60.998 61.111 33.48 0.00 0.00 2.85
40 41 2.311688 CTGCGGCCGAGGAAGGTTAT 62.312 60.000 33.48 0.00 0.00 1.89
41 42 1.594564 GCGGCCGAGGAAGGTTATC 60.595 63.158 33.48 1.41 0.00 1.75
42 43 1.299926 CGGCCGAGGAAGGTTATCG 60.300 63.158 24.07 0.00 36.24 2.92
43 44 1.731433 CGGCCGAGGAAGGTTATCGA 61.731 60.000 24.07 0.00 38.72 3.59
44 45 0.249363 GGCCGAGGAAGGTTATCGAC 60.249 60.000 0.00 0.00 38.72 4.20
45 46 0.594284 GCCGAGGAAGGTTATCGACG 60.594 60.000 0.00 0.00 38.72 5.12
46 47 0.030369 CCGAGGAAGGTTATCGACGG 59.970 60.000 0.00 0.00 38.72 4.79
47 48 0.737219 CGAGGAAGGTTATCGACGGT 59.263 55.000 0.00 0.00 38.72 4.83
48 49 1.533338 CGAGGAAGGTTATCGACGGTG 60.533 57.143 0.00 0.00 38.72 4.94
49 50 1.475682 GAGGAAGGTTATCGACGGTGT 59.524 52.381 0.00 0.00 0.00 4.16
50 51 1.203994 AGGAAGGTTATCGACGGTGTG 59.796 52.381 0.00 0.00 0.00 3.82
51 52 1.203052 GGAAGGTTATCGACGGTGTGA 59.797 52.381 0.00 0.00 0.00 3.58
52 53 2.353011 GGAAGGTTATCGACGGTGTGAA 60.353 50.000 0.00 0.00 0.00 3.18
53 54 3.319755 GAAGGTTATCGACGGTGTGAAA 58.680 45.455 0.00 0.00 0.00 2.69
54 55 3.389925 AGGTTATCGACGGTGTGAAAA 57.610 42.857 0.00 0.00 0.00 2.29
55 56 3.323243 AGGTTATCGACGGTGTGAAAAG 58.677 45.455 0.00 0.00 0.00 2.27
56 57 3.006110 AGGTTATCGACGGTGTGAAAAGA 59.994 43.478 0.00 0.00 0.00 2.52
57 58 3.742369 GGTTATCGACGGTGTGAAAAGAA 59.258 43.478 0.00 0.00 0.00 2.52
58 59 4.376717 GGTTATCGACGGTGTGAAAAGAAC 60.377 45.833 0.00 0.00 0.00 3.01
59 60 2.296831 TCGACGGTGTGAAAAGAACA 57.703 45.000 0.00 0.00 0.00 3.18
60 61 1.928503 TCGACGGTGTGAAAAGAACAC 59.071 47.619 0.00 0.00 45.81 3.32
61 62 1.931172 CGACGGTGTGAAAAGAACACT 59.069 47.619 6.65 0.00 45.81 3.55
62 63 2.034001 CGACGGTGTGAAAAGAACACTC 60.034 50.000 6.65 0.00 45.81 3.51
63 64 2.933906 GACGGTGTGAAAAGAACACTCA 59.066 45.455 6.65 0.00 45.81 3.41
69 70 5.179555 GGTGTGAAAAGAACACTCATAGACC 59.820 44.000 6.65 0.00 45.81 3.85
86 87 8.141835 TCATAGACCGATGTGTTGAAATAATG 57.858 34.615 0.00 0.00 0.00 1.90
88 89 8.611757 CATAGACCGATGTGTTGAAATAATGAA 58.388 33.333 0.00 0.00 0.00 2.57
135 139 2.827921 GGCAAAACATGAGGAGGATTGT 59.172 45.455 0.00 0.00 0.00 2.71
186 190 0.105709 TGACTCACCTGACCTGACCA 60.106 55.000 0.00 0.00 0.00 4.02
190 194 0.105709 TCACCTGACCTGACCAGACA 60.106 55.000 0.00 0.00 33.65 3.41
322 326 0.103208 GTCTGGATTCATCGCTCCGT 59.897 55.000 0.00 0.00 34.05 4.69
325 329 1.521457 GGATTCATCGCTCCGTGCA 60.521 57.895 0.00 0.00 43.06 4.57
373 406 2.165998 AGAGGAAGAAACTTGCCATGC 58.834 47.619 0.00 0.00 0.00 4.06
374 407 1.888512 GAGGAAGAAACTTGCCATGCA 59.111 47.619 0.00 0.00 36.47 3.96
398 431 3.374988 ACTTGTACATTGATCCATGTGCG 59.625 43.478 19.87 10.71 36.41 5.34
399 432 2.984562 TGTACATTGATCCATGTGCGT 58.015 42.857 19.87 0.00 36.41 5.24
442 476 8.328014 ACGGAATGGGGTTAAAAATAGTAACTA 58.672 33.333 0.00 0.00 32.96 2.24
443 477 8.615211 CGGAATGGGGTTAAAAATAGTAACTAC 58.385 37.037 0.00 0.00 32.96 2.73
444 478 8.615211 GGAATGGGGTTAAAAATAGTAACTACG 58.385 37.037 0.00 0.00 32.96 3.51
445 479 6.983474 TGGGGTTAAAAATAGTAACTACGC 57.017 37.500 0.00 0.00 32.96 4.42
446 480 6.471146 TGGGGTTAAAAATAGTAACTACGCA 58.529 36.000 0.00 0.00 32.96 5.24
447 481 6.594937 TGGGGTTAAAAATAGTAACTACGCAG 59.405 38.462 0.00 0.00 32.96 5.18
448 482 6.818142 GGGGTTAAAAATAGTAACTACGCAGA 59.182 38.462 0.00 0.00 32.96 4.26
449 483 7.334171 GGGGTTAAAAATAGTAACTACGCAGAA 59.666 37.037 0.00 0.00 32.96 3.02
450 484 8.720562 GGGTTAAAAATAGTAACTACGCAGAAA 58.279 33.333 0.00 0.00 32.96 2.52
451 485 9.750882 GGTTAAAAATAGTAACTACGCAGAAAG 57.249 33.333 0.00 0.00 32.96 2.62
454 488 8.828688 AAAAATAGTAACTACGCAGAAAGAGT 57.171 30.769 0.00 0.00 0.00 3.24
455 489 9.918630 AAAAATAGTAACTACGCAGAAAGAGTA 57.081 29.630 0.00 0.00 0.00 2.59
456 490 9.918630 AAAATAGTAACTACGCAGAAAGAGTAA 57.081 29.630 0.00 0.00 31.94 2.24
457 491 9.570488 AAATAGTAACTACGCAGAAAGAGTAAG 57.430 33.333 0.00 0.00 31.94 2.34
458 492 5.400703 AGTAACTACGCAGAAAGAGTAAGC 58.599 41.667 0.00 0.00 31.94 3.09
459 493 4.522722 AACTACGCAGAAAGAGTAAGCT 57.477 40.909 0.00 0.00 31.94 3.74
460 494 4.522722 ACTACGCAGAAAGAGTAAGCTT 57.477 40.909 3.48 3.48 31.94 3.74
461 495 4.884247 ACTACGCAGAAAGAGTAAGCTTT 58.116 39.130 3.20 0.00 40.59 3.51
462 496 5.298347 ACTACGCAGAAAGAGTAAGCTTTT 58.702 37.500 3.20 0.00 38.16 2.27
463 497 4.474226 ACGCAGAAAGAGTAAGCTTTTG 57.526 40.909 3.20 0.00 38.16 2.44
464 498 3.877508 ACGCAGAAAGAGTAAGCTTTTGT 59.122 39.130 3.20 0.00 38.16 2.83
465 499 5.054477 ACGCAGAAAGAGTAAGCTTTTGTA 58.946 37.500 3.20 0.00 38.16 2.41
466 500 5.526111 ACGCAGAAAGAGTAAGCTTTTGTAA 59.474 36.000 3.20 0.00 38.16 2.41
467 501 6.204882 ACGCAGAAAGAGTAAGCTTTTGTAAT 59.795 34.615 3.20 0.00 38.16 1.89
468 502 7.078228 CGCAGAAAGAGTAAGCTTTTGTAATT 58.922 34.615 3.20 0.00 38.16 1.40
477 511 9.813080 GAGTAAGCTTTTGTAATTCTACACAAG 57.187 33.333 3.20 6.76 43.89 3.16
510 544 5.121611 CCAGATGTTTCGTGTTTGTGCTATA 59.878 40.000 0.00 0.00 0.00 1.31
540 578 8.978874 TTATTGCAACCTACTACATGAATGAT 57.021 30.769 0.00 0.00 0.00 2.45
549 587 8.255206 ACCTACTACATGAATGATCAACGTTAA 58.745 33.333 0.00 0.00 39.49 2.01
562 600 6.372937 TGATCAACGTTAATTTGTCCTGCATA 59.627 34.615 0.00 0.00 0.00 3.14
567 605 4.876107 CGTTAATTTGTCCTGCATACTCCT 59.124 41.667 0.00 0.00 0.00 3.69
838 888 1.119684 GGGACAAACCACAGCCTTTT 58.880 50.000 0.00 0.00 41.20 2.27
888 938 5.568825 CGTTTCCCCAGAATAGAAGTCTCAA 60.569 44.000 0.00 0.00 0.00 3.02
981 1044 4.664677 ACTGTCGTCCTGCACCGC 62.665 66.667 0.00 0.00 0.00 5.68
1013 1076 3.517497 CCCCCACCCCACCACTTT 61.517 66.667 0.00 0.00 0.00 2.66
1032 1095 5.009410 CACTTTCATTGTCTTCTTCCTGCTT 59.991 40.000 0.00 0.00 0.00 3.91
1053 1116 2.667318 CCCGCTACATATTGGCGCG 61.667 63.158 0.00 0.00 46.29 6.86
1056 1119 1.961277 GCTACATATTGGCGCGCCT 60.961 57.895 45.79 31.94 36.94 5.52
1084 1151 2.154462 GCTTCCTCTTGCAAGCTTACA 58.846 47.619 21.99 0.00 41.61 2.41
1085 1152 2.554032 GCTTCCTCTTGCAAGCTTACAA 59.446 45.455 21.99 11.57 41.61 2.41
1091 1158 4.228912 TCTTGCAAGCTTACAAGAAAGC 57.771 40.909 31.07 15.22 46.89 3.51
1471 1546 1.616327 CCATCCCACTCCCACTCCA 60.616 63.158 0.00 0.00 0.00 3.86
1857 1949 3.306472 GACCTGTCCATCTAGTCTCCT 57.694 52.381 0.00 0.00 0.00 3.69
1904 1996 1.810755 CATCGCCAAGATCATGGATGG 59.189 52.381 21.00 8.70 43.54 3.51
1944 2036 7.872113 AATCGATCTAGCATTTTCTTTCCTT 57.128 32.000 0.00 0.00 0.00 3.36
1959 2051 7.775053 TTCTTTCCTTTAATTAGGTGCATGT 57.225 32.000 0.00 0.00 36.63 3.21
1977 2069 3.188159 TGTTCAGTTGACGGTAGCTTT 57.812 42.857 0.00 0.00 0.00 3.51
1978 2070 2.869801 TGTTCAGTTGACGGTAGCTTTG 59.130 45.455 0.00 0.00 0.00 2.77
1996 2091 6.231211 AGCTTTGTTAGTGTTACTACTGCAT 58.769 36.000 0.00 0.00 28.93 3.96
1997 2092 6.369065 AGCTTTGTTAGTGTTACTACTGCATC 59.631 38.462 0.00 0.00 28.93 3.91
1998 2093 6.402226 GCTTTGTTAGTGTTACTACTGCATCC 60.402 42.308 0.00 0.00 28.93 3.51
1999 2094 4.740268 TGTTAGTGTTACTACTGCATCCG 58.260 43.478 0.00 0.00 28.93 4.18
2093 2188 8.818057 AGCTAGCGATAAGTATTTTGTTAGTTG 58.182 33.333 9.55 0.00 0.00 3.16
2154 2250 4.560739 TCTGAGGATGGTGGTGAAGATAT 58.439 43.478 0.00 0.00 0.00 1.63
2189 2290 1.796459 GTGTTTTGTATCCGCGACTGT 59.204 47.619 8.23 0.00 0.00 3.55
2208 2318 2.765699 TGTATGCAGTCTGCTGATGGTA 59.234 45.455 24.76 3.79 45.31 3.25
2241 2364 4.008074 ACTGAAACTGATGGAACGATGT 57.992 40.909 0.00 0.00 0.00 3.06
2251 2374 6.480320 ACTGATGGAACGATGTTAGCTTATTC 59.520 38.462 0.00 0.00 0.00 1.75
2253 2376 6.257849 TGATGGAACGATGTTAGCTTATTCAC 59.742 38.462 0.00 0.00 0.00 3.18
2261 2384 7.148474 ACGATGTTAGCTTATTCACGTTGAAAT 60.148 33.333 0.00 0.00 40.12 2.17
2262 2385 7.162546 CGATGTTAGCTTATTCACGTTGAAATG 59.837 37.037 0.00 1.30 40.12 2.32
2263 2386 6.083630 TGTTAGCTTATTCACGTTGAAATGC 58.916 36.000 0.00 8.65 40.12 3.56
2264 2387 4.764679 AGCTTATTCACGTTGAAATGCA 57.235 36.364 16.40 0.00 40.12 3.96
2273 2396 5.586339 TCACGTTGAAATGCAAAATCTTGA 58.414 33.333 0.00 0.00 38.44 3.02
2343 2477 2.584791 ACTTTGTCGATGCGATTTTGC 58.415 42.857 0.00 0.00 38.42 3.68
2353 2487 2.910199 TGCGATTTTGCAGCTCTAGAT 58.090 42.857 0.00 0.00 40.62 1.98
2359 2493 5.163824 CGATTTTGCAGCTCTAGATTTGACA 60.164 40.000 7.59 3.44 0.00 3.58
2379 2513 6.580788 TGACAATTTGCTCAAGATTTTCCAA 58.419 32.000 0.00 0.00 0.00 3.53
2387 2521 4.537015 CTCAAGATTTTCCAACGGTTCAC 58.463 43.478 0.00 0.00 0.00 3.18
2437 2571 0.666274 ATGGCACGACGTACAGTGTG 60.666 55.000 5.88 8.81 40.26 3.82
2449 2585 4.215965 CGTACAGTGTGTTTTGGTATTGC 58.784 43.478 5.88 0.00 0.00 3.56
2461 2598 3.296322 TGGTATTGCTTTCTTTTGCCG 57.704 42.857 0.00 0.00 0.00 5.69
2473 2610 1.686587 CTTTTGCCGTTCTTCCCCTTT 59.313 47.619 0.00 0.00 0.00 3.11
2474 2611 1.324383 TTTGCCGTTCTTCCCCTTTC 58.676 50.000 0.00 0.00 0.00 2.62
2478 2615 0.960861 CCGTTCTTCCCCTTTCCTGC 60.961 60.000 0.00 0.00 0.00 4.85
2482 2619 1.603455 CTTCCCCTTTCCTGCGCAA 60.603 57.895 13.05 0.00 0.00 4.85
2485 2622 1.178534 TCCCCTTTCCTGCGCAAAAG 61.179 55.000 22.13 22.13 33.26 2.27
2487 2624 0.673437 CCCTTTCCTGCGCAAAAGAA 59.327 50.000 27.94 20.33 35.02 2.52
2488 2625 1.068434 CCCTTTCCTGCGCAAAAGAAA 59.932 47.619 27.94 24.59 35.02 2.52
2489 2626 2.289010 CCCTTTCCTGCGCAAAAGAAAT 60.289 45.455 27.94 0.00 35.02 2.17
2490 2627 2.989166 CCTTTCCTGCGCAAAAGAAATC 59.011 45.455 27.94 0.00 35.02 2.17
2491 2628 3.305608 CCTTTCCTGCGCAAAAGAAATCT 60.306 43.478 27.94 0.00 35.02 2.40
2498 2635 3.068024 TGCGCAAAAGAAATCTTTGAGGT 59.932 39.130 8.16 0.00 44.69 3.85
2509 2646 7.787028 AGAAATCTTTGAGGTACCAGATCTAC 58.213 38.462 15.94 8.31 0.00 2.59
2521 2658 3.117474 ACCAGATCTACGAGGATTGAGGA 60.117 47.826 3.90 0.00 0.00 3.71
2526 2663 3.223435 TCTACGAGGATTGAGGACCATC 58.777 50.000 0.00 0.00 0.00 3.51
2527 2664 2.166907 ACGAGGATTGAGGACCATCT 57.833 50.000 0.00 0.00 0.00 2.90
2528 2665 3.314307 ACGAGGATTGAGGACCATCTA 57.686 47.619 0.00 0.00 0.00 1.98
2529 2666 3.850752 ACGAGGATTGAGGACCATCTAT 58.149 45.455 0.00 0.00 0.00 1.98
2530 2667 4.999310 ACGAGGATTGAGGACCATCTATA 58.001 43.478 0.00 0.00 0.00 1.31
2531 2668 5.584913 ACGAGGATTGAGGACCATCTATAT 58.415 41.667 0.00 0.00 0.00 0.86
2532 2669 6.019748 ACGAGGATTGAGGACCATCTATATT 58.980 40.000 0.00 0.00 0.00 1.28
2533 2670 6.498651 ACGAGGATTGAGGACCATCTATATTT 59.501 38.462 0.00 0.00 0.00 1.40
2534 2671 6.815641 CGAGGATTGAGGACCATCTATATTTG 59.184 42.308 0.00 0.00 0.00 2.32
2535 2672 7.025520 AGGATTGAGGACCATCTATATTTGG 57.974 40.000 0.00 0.63 39.02 3.28
2536 2673 6.012157 AGGATTGAGGACCATCTATATTTGGG 60.012 42.308 0.00 0.00 37.32 4.12
2537 2674 5.582950 TTGAGGACCATCTATATTTGGGG 57.417 43.478 0.00 0.00 37.32 4.96
2538 2675 4.838403 TGAGGACCATCTATATTTGGGGA 58.162 43.478 0.00 0.00 37.32 4.81
2539 2676 5.231552 TGAGGACCATCTATATTTGGGGAA 58.768 41.667 0.00 0.00 37.32 3.97
2540 2677 5.310594 TGAGGACCATCTATATTTGGGGAAG 59.689 44.000 0.00 0.00 37.32 3.46
2541 2678 4.603610 AGGACCATCTATATTTGGGGAAGG 59.396 45.833 0.00 0.00 37.32 3.46
2542 2679 4.354087 GGACCATCTATATTTGGGGAAGGT 59.646 45.833 6.16 0.00 37.32 3.50
2543 2680 5.550403 GGACCATCTATATTTGGGGAAGGTA 59.450 44.000 6.16 0.00 37.32 3.08
2544 2681 6.217693 GGACCATCTATATTTGGGGAAGGTAT 59.782 42.308 6.16 0.00 37.32 2.73
2545 2682 7.272144 ACCATCTATATTTGGGGAAGGTATC 57.728 40.000 6.16 0.00 37.32 2.24
2546 2683 6.070194 ACCATCTATATTTGGGGAAGGTATCG 60.070 42.308 6.16 0.00 37.32 2.92
2547 2684 5.416271 TCTATATTTGGGGAAGGTATCGC 57.584 43.478 0.00 0.00 40.15 4.58
2552 2689 2.908015 GGGAAGGTATCGCCAGCA 59.092 61.111 0.00 0.00 40.61 4.41
2553 2690 1.227674 GGGAAGGTATCGCCAGCAG 60.228 63.158 0.00 0.00 40.61 4.24
2554 2691 1.889573 GGAAGGTATCGCCAGCAGC 60.890 63.158 0.00 0.00 40.61 5.25
2555 2692 1.153369 GAAGGTATCGCCAGCAGCA 60.153 57.895 0.00 0.00 44.04 4.41
2556 2693 0.744414 GAAGGTATCGCCAGCAGCAA 60.744 55.000 0.00 0.00 44.04 3.91
2557 2694 0.322456 AAGGTATCGCCAGCAGCAAA 60.322 50.000 0.00 0.00 44.04 3.68
2558 2695 0.322456 AGGTATCGCCAGCAGCAAAA 60.322 50.000 0.00 0.00 44.04 2.44
2559 2696 0.525761 GGTATCGCCAGCAGCAAAAA 59.474 50.000 0.00 0.00 44.04 1.94
2560 2697 1.134946 GGTATCGCCAGCAGCAAAAAT 59.865 47.619 0.00 0.00 44.04 1.82
2561 2698 2.417243 GGTATCGCCAGCAGCAAAAATT 60.417 45.455 0.00 0.00 44.04 1.82
2562 2699 3.181491 GGTATCGCCAGCAGCAAAAATTA 60.181 43.478 0.00 0.00 44.04 1.40
2563 2700 2.634982 TCGCCAGCAGCAAAAATTAG 57.365 45.000 0.00 0.00 44.04 1.73
2564 2701 1.885887 TCGCCAGCAGCAAAAATTAGT 59.114 42.857 0.00 0.00 44.04 2.24
2565 2702 1.987770 CGCCAGCAGCAAAAATTAGTG 59.012 47.619 0.00 0.00 44.04 2.74
2566 2703 1.728425 GCCAGCAGCAAAAATTAGTGC 59.272 47.619 5.35 5.35 42.97 4.40
2574 2711 4.243007 GCAAAAATTAGTGCTCCACTGT 57.757 40.909 8.06 0.00 45.01 3.55
2575 2712 4.620982 GCAAAAATTAGTGCTCCACTGTT 58.379 39.130 8.06 1.07 45.01 3.16
2576 2713 5.049828 GCAAAAATTAGTGCTCCACTGTTT 58.950 37.500 8.06 6.47 45.01 2.83
2577 2714 5.050837 GCAAAAATTAGTGCTCCACTGTTTG 60.051 40.000 8.06 12.15 45.01 2.93
2578 2715 5.852282 AAAATTAGTGCTCCACTGTTTGT 57.148 34.783 8.06 0.00 45.01 2.83
2579 2716 5.438761 AAATTAGTGCTCCACTGTTTGTC 57.561 39.130 8.06 0.00 45.01 3.18
2580 2717 2.543777 TAGTGCTCCACTGTTTGTCC 57.456 50.000 8.06 0.00 45.01 4.02
2581 2718 0.546122 AGTGCTCCACTGTTTGTCCA 59.454 50.000 0.00 0.00 43.63 4.02
2582 2719 1.143684 AGTGCTCCACTGTTTGTCCAT 59.856 47.619 0.00 0.00 43.63 3.41
2583 2720 1.956477 GTGCTCCACTGTTTGTCCATT 59.044 47.619 0.00 0.00 0.00 3.16
2584 2721 2.362077 GTGCTCCACTGTTTGTCCATTT 59.638 45.455 0.00 0.00 0.00 2.32
2585 2722 2.622942 TGCTCCACTGTTTGTCCATTTC 59.377 45.455 0.00 0.00 0.00 2.17
2586 2723 2.029918 GCTCCACTGTTTGTCCATTTCC 60.030 50.000 0.00 0.00 0.00 3.13
2587 2724 3.221771 CTCCACTGTTTGTCCATTTCCA 58.778 45.455 0.00 0.00 0.00 3.53
2588 2725 3.221771 TCCACTGTTTGTCCATTTCCAG 58.778 45.455 0.00 0.00 0.00 3.86
2589 2726 2.288395 CCACTGTTTGTCCATTTCCAGC 60.288 50.000 0.00 0.00 0.00 4.85
2590 2727 2.361757 CACTGTTTGTCCATTTCCAGCA 59.638 45.455 0.00 0.00 0.00 4.41
2591 2728 2.362077 ACTGTTTGTCCATTTCCAGCAC 59.638 45.455 0.00 0.00 0.00 4.40
2592 2729 1.336440 TGTTTGTCCATTTCCAGCACG 59.664 47.619 0.00 0.00 0.00 5.34
2593 2730 0.313672 TTTGTCCATTTCCAGCACGC 59.686 50.000 0.00 0.00 0.00 5.34
2594 2731 1.851021 TTGTCCATTTCCAGCACGCG 61.851 55.000 3.53 3.53 0.00 6.01
2595 2732 2.032634 GTCCATTTCCAGCACGCGA 61.033 57.895 15.93 0.00 0.00 5.87
2596 2733 1.302112 TCCATTTCCAGCACGCGAA 60.302 52.632 15.93 0.00 0.00 4.70
2597 2734 1.135315 CCATTTCCAGCACGCGAAG 59.865 57.895 15.93 5.94 0.00 3.79
2623 2760 2.361737 GGAACCCTTCTGGCCAGC 60.362 66.667 28.91 11.83 37.83 4.85
2624 2761 2.361737 GAACCCTTCTGGCCAGCC 60.362 66.667 28.91 0.38 37.83 4.85
2625 2762 3.946126 GAACCCTTCTGGCCAGCCC 62.946 68.421 28.91 7.39 37.83 5.19
2627 2764 3.747579 CCCTTCTGGCCAGCCCAT 61.748 66.667 28.91 0.00 44.33 4.00
2628 2765 2.441532 CCTTCTGGCCAGCCCATG 60.442 66.667 28.91 12.85 44.33 3.66
2629 2766 2.357836 CTTCTGGCCAGCCCATGT 59.642 61.111 28.91 0.00 44.33 3.21
2630 2767 2.036098 TTCTGGCCAGCCCATGTG 59.964 61.111 28.91 2.44 44.33 3.21
2631 2768 4.746309 TCTGGCCAGCCCATGTGC 62.746 66.667 28.91 0.00 44.33 4.57
2641 2778 3.061848 CCATGTGCGGGTTGGGAC 61.062 66.667 0.00 0.00 0.00 4.46
2642 2779 3.430862 CATGTGCGGGTTGGGACG 61.431 66.667 0.00 0.00 0.00 4.79
2648 2785 3.387947 CGGGTTGGGACGCCTACT 61.388 66.667 0.00 0.00 35.45 2.57
2649 2786 2.267961 GGGTTGGGACGCCTACTG 59.732 66.667 0.00 0.00 32.93 2.74
2650 2787 2.590114 GGGTTGGGACGCCTACTGT 61.590 63.158 0.00 0.00 32.93 3.55
2651 2788 1.373812 GGTTGGGACGCCTACTGTT 59.626 57.895 0.00 0.00 0.00 3.16
2652 2789 0.250597 GGTTGGGACGCCTACTGTTT 60.251 55.000 0.00 0.00 0.00 2.83
2653 2790 1.601166 GTTGGGACGCCTACTGTTTT 58.399 50.000 0.00 0.00 0.00 2.43
2654 2791 1.951602 GTTGGGACGCCTACTGTTTTT 59.048 47.619 0.00 0.00 0.00 1.94
2687 2824 9.853177 AATTCGGGATATCAAGAAGTTCTAAAT 57.147 29.630 5.65 5.57 0.00 1.40
2688 2825 9.853177 ATTCGGGATATCAAGAAGTTCTAAATT 57.147 29.630 5.65 0.00 0.00 1.82
2689 2826 9.681062 TTCGGGATATCAAGAAGTTCTAAATTT 57.319 29.630 5.65 0.00 0.00 1.82
2690 2827 9.326413 TCGGGATATCAAGAAGTTCTAAATTTC 57.674 33.333 5.65 7.39 0.00 2.17
2691 2828 9.109393 CGGGATATCAAGAAGTTCTAAATTTCA 57.891 33.333 5.65 0.00 30.34 2.69
2760 2897 7.656707 ATGTTCATGGTTTAAGAAAATGTGC 57.343 32.000 0.00 0.00 0.00 4.57
2761 2898 6.577103 TGTTCATGGTTTAAGAAAATGTGCA 58.423 32.000 0.00 0.00 0.00 4.57
2762 2899 7.215789 TGTTCATGGTTTAAGAAAATGTGCAT 58.784 30.769 0.00 0.00 0.00 3.96
2763 2900 7.171167 TGTTCATGGTTTAAGAAAATGTGCATG 59.829 33.333 0.00 0.00 0.00 4.06
2764 2901 6.990798 TCATGGTTTAAGAAAATGTGCATGA 58.009 32.000 0.00 0.00 0.00 3.07
2765 2902 7.440198 TCATGGTTTAAGAAAATGTGCATGAA 58.560 30.769 0.00 0.00 0.00 2.57
2766 2903 8.095792 TCATGGTTTAAGAAAATGTGCATGAAT 58.904 29.630 0.00 0.00 0.00 2.57
2767 2904 8.723311 CATGGTTTAAGAAAATGTGCATGAATT 58.277 29.630 0.00 0.00 0.00 2.17
2768 2905 8.674263 TGGTTTAAGAAAATGTGCATGAATTT 57.326 26.923 0.00 0.00 0.00 1.82
2769 2906 9.770097 TGGTTTAAGAAAATGTGCATGAATTTA 57.230 25.926 0.00 0.00 0.00 1.40
2817 2954 8.868522 ATGTTCAGGATTTAAGAGAATGTTCA 57.131 30.769 0.00 0.00 0.00 3.18
2818 2955 8.868522 TGTTCAGGATTTAAGAGAATGTTCAT 57.131 30.769 0.00 0.00 0.00 2.57
2819 2956 8.733458 TGTTCAGGATTTAAGAGAATGTTCATG 58.267 33.333 0.00 0.00 0.00 3.07
2820 2957 7.870509 TCAGGATTTAAGAGAATGTTCATGG 57.129 36.000 0.00 0.00 0.00 3.66
2821 2958 7.632861 TCAGGATTTAAGAGAATGTTCATGGA 58.367 34.615 0.00 0.00 0.00 3.41
2822 2959 7.772292 TCAGGATTTAAGAGAATGTTCATGGAG 59.228 37.037 0.00 0.00 0.00 3.86
2823 2960 7.555554 CAGGATTTAAGAGAATGTTCATGGAGT 59.444 37.037 0.00 0.00 0.00 3.85
2824 2961 8.112183 AGGATTTAAGAGAATGTTCATGGAGTT 58.888 33.333 0.00 0.00 0.00 3.01
2825 2962 8.743714 GGATTTAAGAGAATGTTCATGGAGTTT 58.256 33.333 0.00 0.00 0.00 2.66
2853 2990 7.977789 AAAATGTTCACAAACTTCAAAAGGT 57.022 28.000 0.00 0.00 36.30 3.50
2854 2991 7.977789 AAATGTTCACAAACTTCAAAAGGTT 57.022 28.000 0.00 0.00 39.51 3.50
2855 2992 7.595311 AATGTTCACAAACTTCAAAAGGTTC 57.405 32.000 0.00 0.00 35.93 3.62
2856 2993 6.090483 TGTTCACAAACTTCAAAAGGTTCA 57.910 33.333 0.00 0.00 35.93 3.18
2857 2994 6.696411 TGTTCACAAACTTCAAAAGGTTCAT 58.304 32.000 0.00 0.00 35.93 2.57
2858 2995 6.811170 TGTTCACAAACTTCAAAAGGTTCATC 59.189 34.615 0.00 0.00 35.93 2.92
2859 2996 6.522625 TCACAAACTTCAAAAGGTTCATCA 57.477 33.333 0.00 0.00 35.93 3.07
2860 2997 7.111247 TCACAAACTTCAAAAGGTTCATCAT 57.889 32.000 0.00 0.00 35.93 2.45
2861 2998 7.555087 TCACAAACTTCAAAAGGTTCATCATT 58.445 30.769 0.00 0.00 35.93 2.57
2862 2999 8.040132 TCACAAACTTCAAAAGGTTCATCATTT 58.960 29.630 0.00 0.00 35.93 2.32
2863 3000 8.667463 CACAAACTTCAAAAGGTTCATCATTTT 58.333 29.630 0.00 0.00 35.93 1.82
2864 3001 9.883142 ACAAACTTCAAAAGGTTCATCATTTTA 57.117 25.926 0.00 0.00 35.93 1.52
2866 3003 9.883142 AAACTTCAAAAGGTTCATCATTTTACA 57.117 25.926 0.00 0.00 37.84 2.41
2867 3004 9.883142 AACTTCAAAAGGTTCATCATTTTACAA 57.117 25.926 0.00 0.00 37.84 2.41
2868 3005 9.883142 ACTTCAAAAGGTTCATCATTTTACAAA 57.117 25.926 0.00 0.00 37.84 2.83
2871 3008 8.825745 TCAAAAGGTTCATCATTTTACAAAAGC 58.174 29.630 0.00 0.00 37.84 3.51
2872 3009 7.406799 AAAGGTTCATCATTTTACAAAAGCG 57.593 32.000 0.00 0.00 0.00 4.68
2873 3010 6.084326 AGGTTCATCATTTTACAAAAGCGT 57.916 33.333 0.00 0.00 0.00 5.07
2874 3011 5.920273 AGGTTCATCATTTTACAAAAGCGTG 59.080 36.000 0.00 0.00 0.00 5.34
2875 3012 5.918011 GGTTCATCATTTTACAAAAGCGTGA 59.082 36.000 0.00 0.00 0.00 4.35
2876 3013 6.419413 GGTTCATCATTTTACAAAAGCGTGAA 59.581 34.615 6.89 6.89 0.00 3.18
2877 3014 7.116233 GGTTCATCATTTTACAAAAGCGTGAAT 59.884 33.333 11.15 0.00 32.79 2.57
2878 3015 8.487176 GTTCATCATTTTACAAAAGCGTGAATT 58.513 29.630 11.15 0.00 32.79 2.17
2879 3016 8.586570 TCATCATTTTACAAAAGCGTGAATTT 57.413 26.923 0.00 0.00 0.00 1.82
2880 3017 9.684448 TCATCATTTTACAAAAGCGTGAATTTA 57.316 25.926 0.00 0.00 0.00 1.40
2887 3024 9.907576 TTTACAAAAGCGTGAATTTAAAACATG 57.092 25.926 11.25 11.25 0.00 3.21
2888 3025 7.532682 ACAAAAGCGTGAATTTAAAACATGT 57.467 28.000 14.78 0.00 0.00 3.21
2889 3026 7.969314 ACAAAAGCGTGAATTTAAAACATGTT 58.031 26.923 4.92 4.92 0.00 2.71
2890 3027 8.113675 ACAAAAGCGTGAATTTAAAACATGTTC 58.886 29.630 12.39 0.00 0.00 3.18
2891 3028 7.763172 AAAGCGTGAATTTAAAACATGTTCA 57.237 28.000 12.39 0.28 0.00 3.18
2892 3029 7.945033 AAGCGTGAATTTAAAACATGTTCAT 57.055 28.000 12.39 6.81 32.19 2.57
2893 3030 7.566858 AGCGTGAATTTAAAACATGTTCATC 57.433 32.000 12.39 5.14 32.19 2.92
2894 3031 7.144661 AGCGTGAATTTAAAACATGTTCATCA 58.855 30.769 12.39 7.53 32.19 3.07
2895 3032 7.814107 AGCGTGAATTTAAAACATGTTCATCAT 59.186 29.630 12.39 0.00 37.22 2.45
2896 3033 8.434661 GCGTGAATTTAAAACATGTTCATCATT 58.565 29.630 12.39 8.42 34.09 2.57
2897 3034 9.941991 CGTGAATTTAAAACATGTTCATCATTC 57.058 29.630 12.39 16.20 34.09 2.67
2967 3104 9.065798 TGTTCATGATTTAAGAGAATGTTCACA 57.934 29.630 0.00 0.00 0.00 3.58
2968 3105 9.897744 GTTCATGATTTAAGAGAATGTTCACAA 57.102 29.630 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.571984 CAGTTTAATGGAGATGCATGACGA 59.428 41.667 2.46 0.00 0.00 4.20
1 2 4.787563 GCAGTTTAATGGAGATGCATGACG 60.788 45.833 2.46 0.00 33.92 4.35
2 3 4.604976 GCAGTTTAATGGAGATGCATGAC 58.395 43.478 2.46 0.00 33.92 3.06
3 4 3.313249 CGCAGTTTAATGGAGATGCATGA 59.687 43.478 2.46 0.00 33.33 3.07
4 5 3.549423 CCGCAGTTTAATGGAGATGCATG 60.549 47.826 2.46 0.00 33.33 4.06
5 6 2.620115 CCGCAGTTTAATGGAGATGCAT 59.380 45.455 0.00 0.00 33.33 3.96
6 7 2.016318 CCGCAGTTTAATGGAGATGCA 58.984 47.619 0.00 0.00 33.33 3.96
7 8 1.268743 GCCGCAGTTTAATGGAGATGC 60.269 52.381 0.00 0.00 0.00 3.91
8 9 1.334869 GGCCGCAGTTTAATGGAGATG 59.665 52.381 0.00 0.00 0.00 2.90
9 10 1.680338 GGCCGCAGTTTAATGGAGAT 58.320 50.000 0.00 0.00 0.00 2.75
10 11 0.742990 CGGCCGCAGTTTAATGGAGA 60.743 55.000 14.67 0.00 0.00 3.71
11 12 0.742990 TCGGCCGCAGTTTAATGGAG 60.743 55.000 23.51 0.00 0.00 3.86
12 13 0.742990 CTCGGCCGCAGTTTAATGGA 60.743 55.000 23.51 0.00 0.00 3.41
13 14 1.714899 CCTCGGCCGCAGTTTAATGG 61.715 60.000 23.51 6.91 0.00 3.16
14 15 0.742990 TCCTCGGCCGCAGTTTAATG 60.743 55.000 23.51 5.23 0.00 1.90
15 16 0.035820 TTCCTCGGCCGCAGTTTAAT 60.036 50.000 23.51 0.00 0.00 1.40
16 17 0.672401 CTTCCTCGGCCGCAGTTTAA 60.672 55.000 23.51 11.12 0.00 1.52
17 18 1.079405 CTTCCTCGGCCGCAGTTTA 60.079 57.895 23.51 0.00 0.00 2.01
18 19 2.358737 CTTCCTCGGCCGCAGTTT 60.359 61.111 23.51 0.00 0.00 2.66
19 20 4.394712 CCTTCCTCGGCCGCAGTT 62.395 66.667 23.51 0.00 0.00 3.16
21 22 2.311688 ATAACCTTCCTCGGCCGCAG 62.312 60.000 23.51 18.38 0.00 5.18
22 23 2.306255 GATAACCTTCCTCGGCCGCA 62.306 60.000 23.51 8.85 0.00 5.69
23 24 1.594564 GATAACCTTCCTCGGCCGC 60.595 63.158 23.51 0.00 0.00 6.53
24 25 1.299926 CGATAACCTTCCTCGGCCG 60.300 63.158 22.12 22.12 0.00 6.13
25 26 0.249363 GTCGATAACCTTCCTCGGCC 60.249 60.000 0.00 0.00 31.16 6.13
26 27 0.594284 CGTCGATAACCTTCCTCGGC 60.594 60.000 0.00 0.00 33.89 5.54
27 28 0.030369 CCGTCGATAACCTTCCTCGG 59.970 60.000 0.00 0.00 33.38 4.63
28 29 0.737219 ACCGTCGATAACCTTCCTCG 59.263 55.000 0.00 0.00 0.00 4.63
29 30 1.475682 ACACCGTCGATAACCTTCCTC 59.524 52.381 0.00 0.00 0.00 3.71
30 31 1.203994 CACACCGTCGATAACCTTCCT 59.796 52.381 0.00 0.00 0.00 3.36
31 32 1.203052 TCACACCGTCGATAACCTTCC 59.797 52.381 0.00 0.00 0.00 3.46
32 33 2.642139 TCACACCGTCGATAACCTTC 57.358 50.000 0.00 0.00 0.00 3.46
33 34 3.389925 TTTCACACCGTCGATAACCTT 57.610 42.857 0.00 0.00 0.00 3.50
34 35 3.006110 TCTTTTCACACCGTCGATAACCT 59.994 43.478 0.00 0.00 0.00 3.50
35 36 3.319755 TCTTTTCACACCGTCGATAACC 58.680 45.455 0.00 0.00 0.00 2.85
36 37 4.209703 TGTTCTTTTCACACCGTCGATAAC 59.790 41.667 0.00 0.00 0.00 1.89
37 38 4.209703 GTGTTCTTTTCACACCGTCGATAA 59.790 41.667 0.00 0.00 38.95 1.75
38 39 3.737266 GTGTTCTTTTCACACCGTCGATA 59.263 43.478 0.00 0.00 38.95 2.92
39 40 2.542595 GTGTTCTTTTCACACCGTCGAT 59.457 45.455 0.00 0.00 38.95 3.59
40 41 1.928503 GTGTTCTTTTCACACCGTCGA 59.071 47.619 0.00 0.00 38.95 4.20
41 42 1.931172 AGTGTTCTTTTCACACCGTCG 59.069 47.619 0.00 0.00 44.90 5.12
42 43 2.933906 TGAGTGTTCTTTTCACACCGTC 59.066 45.455 0.00 0.00 44.90 4.79
43 44 2.980568 TGAGTGTTCTTTTCACACCGT 58.019 42.857 0.00 0.00 44.90 4.83
44 45 4.988540 TCTATGAGTGTTCTTTTCACACCG 59.011 41.667 0.00 0.00 44.90 4.94
45 46 5.179555 GGTCTATGAGTGTTCTTTTCACACC 59.820 44.000 0.00 0.00 44.90 4.16
46 47 5.107453 CGGTCTATGAGTGTTCTTTTCACAC 60.107 44.000 0.00 0.00 44.25 3.82
47 48 4.988540 CGGTCTATGAGTGTTCTTTTCACA 59.011 41.667 0.00 0.00 38.16 3.58
48 49 5.227908 TCGGTCTATGAGTGTTCTTTTCAC 58.772 41.667 0.00 0.00 36.22 3.18
49 50 5.462530 TCGGTCTATGAGTGTTCTTTTCA 57.537 39.130 0.00 0.00 0.00 2.69
50 51 5.869888 ACATCGGTCTATGAGTGTTCTTTTC 59.130 40.000 0.00 0.00 0.00 2.29
51 52 5.639506 CACATCGGTCTATGAGTGTTCTTTT 59.360 40.000 0.00 0.00 0.00 2.27
52 53 5.171476 CACATCGGTCTATGAGTGTTCTTT 58.829 41.667 0.00 0.00 0.00 2.52
53 54 4.220821 ACACATCGGTCTATGAGTGTTCTT 59.779 41.667 0.00 0.00 36.91 2.52
54 55 3.764434 ACACATCGGTCTATGAGTGTTCT 59.236 43.478 0.00 0.00 36.91 3.01
55 56 4.111375 ACACATCGGTCTATGAGTGTTC 57.889 45.455 0.00 0.00 36.91 3.18
56 57 4.537135 AACACATCGGTCTATGAGTGTT 57.463 40.909 0.00 0.00 43.11 3.32
57 58 3.509967 TCAACACATCGGTCTATGAGTGT 59.490 43.478 0.00 0.00 41.48 3.55
58 59 4.110036 TCAACACATCGGTCTATGAGTG 57.890 45.455 0.00 0.00 32.08 3.51
59 60 4.801330 TTCAACACATCGGTCTATGAGT 57.199 40.909 0.00 0.00 32.90 3.41
60 61 7.770801 TTATTTCAACACATCGGTCTATGAG 57.229 36.000 0.00 0.00 0.00 2.90
61 62 7.984617 TCATTATTTCAACACATCGGTCTATGA 59.015 33.333 0.00 0.00 0.00 2.15
62 63 8.141835 TCATTATTTCAACACATCGGTCTATG 57.858 34.615 0.00 0.00 0.00 2.23
63 64 8.731275 TTCATTATTTCAACACATCGGTCTAT 57.269 30.769 0.00 0.00 0.00 1.98
69 70 6.620678 AGGGTTTCATTATTTCAACACATCG 58.379 36.000 0.00 0.00 0.00 3.84
86 87 3.283259 ACAAGCTAGGCATAGGGTTTC 57.717 47.619 7.62 0.00 0.00 2.78
88 89 2.576191 TCAACAAGCTAGGCATAGGGTT 59.424 45.455 7.62 0.00 0.00 4.11
135 139 2.361104 GCGGGATGCCTTGGTGAA 60.361 61.111 0.28 0.00 37.76 3.18
186 190 1.299620 CGTCAAACGGGTCGTGTCT 60.300 57.895 0.00 0.00 39.99 3.41
190 194 2.660552 CTGCGTCAAACGGGTCGT 60.661 61.111 1.33 0.00 42.82 4.34
249 253 2.025155 GCTACTCCTAGCTGTGCAGTA 58.975 52.381 0.00 0.00 42.11 2.74
301 305 0.250081 GGAGCGATGAATCCAGACCC 60.250 60.000 0.00 0.00 35.54 4.46
325 329 0.663153 GGTGAACTTTCGTTGCAGCT 59.337 50.000 0.00 0.00 32.39 4.24
373 406 5.633927 CACATGGATCAATGTACAAGTGTG 58.366 41.667 15.53 0.00 38.75 3.82
374 407 4.156556 GCACATGGATCAATGTACAAGTGT 59.843 41.667 15.53 0.00 38.75 3.55
398 431 7.691050 CCATTCCGTTTTATTTCTCGTAGAAAC 59.309 37.037 10.79 0.00 45.83 2.78
399 432 7.148373 CCCATTCCGTTTTATTTCTCGTAGAAA 60.148 37.037 10.92 10.92 46.89 2.52
412 445 8.419922 ACTATTTTTAACCCCATTCCGTTTTA 57.580 30.769 0.00 0.00 0.00 1.52
442 476 3.877508 ACAAAAGCTTACTCTTTCTGCGT 59.122 39.130 0.00 0.00 35.41 5.24
443 477 4.474226 ACAAAAGCTTACTCTTTCTGCG 57.526 40.909 0.00 0.00 35.41 5.18
444 478 8.293157 AGAATTACAAAAGCTTACTCTTTCTGC 58.707 33.333 0.00 0.00 35.41 4.26
449 483 9.555727 TGTGTAGAATTACAAAAGCTTACTCTT 57.444 29.630 0.00 0.00 41.25 2.85
450 484 9.555727 TTGTGTAGAATTACAAAAGCTTACTCT 57.444 29.630 0.00 0.00 41.25 3.24
451 485 9.813080 CTTGTGTAGAATTACAAAAGCTTACTC 57.187 33.333 0.00 0.00 44.18 2.59
461 495 9.485206 GGTTACTCTTCTTGTGTAGAATTACAA 57.515 33.333 0.00 0.00 41.89 2.41
462 496 8.644216 TGGTTACTCTTCTTGTGTAGAATTACA 58.356 33.333 0.00 0.00 41.89 2.41
463 497 9.141400 CTGGTTACTCTTCTTGTGTAGAATTAC 57.859 37.037 0.00 0.00 41.89 1.89
464 498 9.085645 TCTGGTTACTCTTCTTGTGTAGAATTA 57.914 33.333 0.00 0.00 41.89 1.40
465 499 7.963532 TCTGGTTACTCTTCTTGTGTAGAATT 58.036 34.615 0.00 0.00 41.89 2.17
466 500 7.540474 TCTGGTTACTCTTCTTGTGTAGAAT 57.460 36.000 0.00 0.00 41.89 2.40
467 501 6.971726 TCTGGTTACTCTTCTTGTGTAGAA 57.028 37.500 0.00 0.00 40.57 2.10
468 502 6.493802 ACATCTGGTTACTCTTCTTGTGTAGA 59.506 38.462 0.00 0.00 0.00 2.59
477 511 4.989168 ACACGAAACATCTGGTTACTCTTC 59.011 41.667 0.00 0.00 39.29 2.87
510 544 7.109501 TCATGTAGTAGGTTGCAATAATGTGT 58.890 34.615 0.59 0.00 0.00 3.72
524 562 8.642908 TTAACGTTGATCATTCATGTAGTAGG 57.357 34.615 11.99 0.00 0.00 3.18
527 565 9.773328 CAAATTAACGTTGATCATTCATGTAGT 57.227 29.630 11.99 0.00 0.00 2.73
540 578 5.703592 AGTATGCAGGACAAATTAACGTTGA 59.296 36.000 11.99 2.22 0.00 3.18
549 587 3.451178 ACGTAGGAGTATGCAGGACAAAT 59.549 43.478 4.50 0.00 0.00 2.32
562 600 0.392729 AGCAGCTCGTACGTAGGAGT 60.393 55.000 33.64 22.69 39.64 3.85
567 605 1.153901 GCCAAGCAGCTCGTACGTA 60.154 57.895 16.05 0.00 0.00 3.57
608 646 2.915659 TCCTCTGCGTGGTTCGGT 60.916 61.111 0.00 0.00 40.26 4.69
723 768 3.138798 GGTGGCATCTGGCTGCTG 61.139 66.667 0.00 0.00 44.01 4.41
724 769 3.336568 AGGTGGCATCTGGCTGCT 61.337 61.111 0.00 0.00 44.01 4.24
725 770 2.827642 GAGGTGGCATCTGGCTGC 60.828 66.667 4.20 0.00 44.01 5.25
726 771 1.153208 GAGAGGTGGCATCTGGCTG 60.153 63.158 4.20 0.00 44.01 4.85
727 772 2.729479 CGAGAGGTGGCATCTGGCT 61.729 63.158 4.20 0.00 44.01 4.75
728 773 2.202987 CGAGAGGTGGCATCTGGC 60.203 66.667 4.20 0.00 43.74 4.85
729 774 1.142748 GACGAGAGGTGGCATCTGG 59.857 63.158 4.20 1.18 0.00 3.86
730 775 0.534412 AAGACGAGAGGTGGCATCTG 59.466 55.000 4.20 0.00 0.00 2.90
731 776 1.066573 CAAAGACGAGAGGTGGCATCT 60.067 52.381 0.00 0.00 0.00 2.90
857 907 0.536460 TTCTGGGGAAACGGACAAGC 60.536 55.000 0.00 0.00 0.00 4.01
888 938 0.930726 TTTGAACAGGAGTGGGGGTT 59.069 50.000 0.00 0.00 0.00 4.11
995 1058 4.875301 AAGTGGTGGGGTGGGGGT 62.875 66.667 0.00 0.00 0.00 4.95
996 1059 3.517497 AAAGTGGTGGGGTGGGGG 61.517 66.667 0.00 0.00 0.00 5.40
1013 1076 3.560025 GGGAAGCAGGAAGAAGACAATGA 60.560 47.826 0.00 0.00 0.00 2.57
1032 1095 1.758592 GCCAATATGTAGCGGGGGA 59.241 57.895 0.00 0.00 0.00 4.81
1056 1119 3.319198 AAGAGGAAGCCGCGGGAA 61.319 61.111 29.38 0.00 0.00 3.97
1455 1530 0.178861 AGTTGGAGTGGGAGTGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
1857 1949 3.961414 GCCGGTGGGGAGGTTGAA 61.961 66.667 1.90 0.00 38.47 2.69
1904 1996 1.491505 GATTAGAGCTTGGCCGTCGC 61.492 60.000 0.00 0.00 0.00 5.19
1944 2036 6.348132 CGTCAACTGAACATGCACCTAATTAA 60.348 38.462 0.00 0.00 0.00 1.40
1959 2051 3.188159 ACAAAGCTACCGTCAACTGAA 57.812 42.857 0.00 0.00 0.00 3.02
1977 2069 4.219070 ACGGATGCAGTAGTAACACTAACA 59.781 41.667 0.00 0.00 31.62 2.41
1978 2070 4.741342 ACGGATGCAGTAGTAACACTAAC 58.259 43.478 0.00 0.00 31.62 2.34
1996 2091 0.104986 AGGATGGATGGATGGACGGA 60.105 55.000 0.00 0.00 0.00 4.69
1997 2092 0.322975 GAGGATGGATGGATGGACGG 59.677 60.000 0.00 0.00 0.00 4.79
1998 2093 0.322975 GGAGGATGGATGGATGGACG 59.677 60.000 0.00 0.00 0.00 4.79
1999 2094 1.438469 TGGAGGATGGATGGATGGAC 58.562 55.000 0.00 0.00 0.00 4.02
2093 2188 2.084546 CCATTTCTCCTGAACGAACCC 58.915 52.381 0.00 0.00 31.02 4.11
2154 2250 6.137794 ACAAAACACACGGATTAACATGAA 57.862 33.333 0.00 0.00 0.00 2.57
2208 2318 3.131396 CAGTTTCAGTTCTACGCTTGGT 58.869 45.455 0.00 0.00 0.00 3.67
2241 2364 6.247727 TGCATTTCAACGTGAATAAGCTAA 57.752 33.333 0.00 0.00 36.11 3.09
2251 2374 5.886715 TCAAGATTTTGCATTTCAACGTG 57.113 34.783 0.00 0.00 33.73 4.49
2253 2376 7.342318 AGAATCAAGATTTTGCATTTCAACG 57.658 32.000 0.00 0.00 33.73 4.10
2261 2384 8.665643 AAATCACAAAGAATCAAGATTTTGCA 57.334 26.923 6.98 0.00 33.36 4.08
2262 2385 8.767085 TGAAATCACAAAGAATCAAGATTTTGC 58.233 29.630 0.00 0.00 36.25 3.68
2307 2430 7.057894 TCGACAAAGTAATAGGGCCAAATAAT 58.942 34.615 6.18 0.00 0.00 1.28
2309 2432 5.991861 TCGACAAAGTAATAGGGCCAAATA 58.008 37.500 6.18 0.00 0.00 1.40
2310 2433 4.850680 TCGACAAAGTAATAGGGCCAAAT 58.149 39.130 6.18 0.00 0.00 2.32
2311 2434 4.289238 TCGACAAAGTAATAGGGCCAAA 57.711 40.909 6.18 0.00 0.00 3.28
2315 2449 2.221055 CGCATCGACAAAGTAATAGGGC 59.779 50.000 0.00 0.00 0.00 5.19
2317 2451 5.907197 AATCGCATCGACAAAGTAATAGG 57.093 39.130 0.00 0.00 39.18 2.57
2319 2453 5.963004 GCAAAATCGCATCGACAAAGTAATA 59.037 36.000 0.00 0.00 39.18 0.98
2323 2457 2.031245 TGCAAAATCGCATCGACAAAGT 60.031 40.909 0.00 0.00 39.18 2.66
2343 2477 6.128090 TGAGCAAATTGTCAAATCTAGAGCTG 60.128 38.462 0.00 0.00 0.00 4.24
2349 2483 9.985730 AAAATCTTGAGCAAATTGTCAAATCTA 57.014 25.926 10.48 1.59 32.36 1.98
2350 2484 8.897872 AAAATCTTGAGCAAATTGTCAAATCT 57.102 26.923 10.48 0.00 32.36 2.40
2353 2487 7.046652 TGGAAAATCTTGAGCAAATTGTCAAA 58.953 30.769 10.48 5.04 32.36 2.69
2359 2493 4.990426 CCGTTGGAAAATCTTGAGCAAATT 59.010 37.500 0.00 0.00 0.00 1.82
2391 2525 8.311836 TGATCCGAAAACAGAGTTAGTTAATCT 58.688 33.333 0.00 0.00 0.00 2.40
2393 2527 8.842358 TTGATCCGAAAACAGAGTTAGTTAAT 57.158 30.769 0.00 0.00 0.00 1.40
2394 2528 8.717821 CATTGATCCGAAAACAGAGTTAGTTAA 58.282 33.333 0.00 0.00 0.00 2.01
2396 2530 6.149474 CCATTGATCCGAAAACAGAGTTAGTT 59.851 38.462 0.00 0.00 0.00 2.24
2398 2532 5.447818 GCCATTGATCCGAAAACAGAGTTAG 60.448 44.000 0.00 0.00 0.00 2.34
2399 2533 4.394920 GCCATTGATCCGAAAACAGAGTTA 59.605 41.667 0.00 0.00 0.00 2.24
2400 2534 3.191371 GCCATTGATCCGAAAACAGAGTT 59.809 43.478 0.00 0.00 0.00 3.01
2401 2535 2.749621 GCCATTGATCCGAAAACAGAGT 59.250 45.455 0.00 0.00 0.00 3.24
2402 2536 2.749076 TGCCATTGATCCGAAAACAGAG 59.251 45.455 0.00 0.00 0.00 3.35
2403 2537 2.487762 GTGCCATTGATCCGAAAACAGA 59.512 45.455 0.00 0.00 0.00 3.41
2404 2538 2.728846 CGTGCCATTGATCCGAAAACAG 60.729 50.000 0.00 0.00 0.00 3.16
2405 2539 1.198867 CGTGCCATTGATCCGAAAACA 59.801 47.619 0.00 0.00 0.00 2.83
2406 2540 1.466950 TCGTGCCATTGATCCGAAAAC 59.533 47.619 0.00 0.00 0.00 2.43
2411 2545 0.526739 TACGTCGTGCCATTGATCCG 60.527 55.000 8.47 0.00 0.00 4.18
2437 2571 5.558083 CGGCAAAAGAAAGCAATACCAAAAC 60.558 40.000 0.00 0.00 0.00 2.43
2449 2585 2.288213 GGGGAAGAACGGCAAAAGAAAG 60.288 50.000 0.00 0.00 0.00 2.62
2461 2598 1.587043 GCGCAGGAAAGGGGAAGAAC 61.587 60.000 0.30 0.00 0.00 3.01
2473 2610 3.317711 TCAAAGATTTCTTTTGCGCAGGA 59.682 39.130 11.31 7.98 43.07 3.86
2474 2611 3.641648 TCAAAGATTTCTTTTGCGCAGG 58.358 40.909 11.31 5.43 43.07 4.85
2478 2615 5.154222 GGTACCTCAAAGATTTCTTTTGCG 58.846 41.667 4.06 0.00 43.07 4.85
2482 2619 7.694093 AGATCTGGTACCTCAAAGATTTCTTT 58.306 34.615 14.36 0.00 46.23 2.52
2485 2622 6.697892 CGTAGATCTGGTACCTCAAAGATTTC 59.302 42.308 14.36 3.27 29.59 2.17
2487 2624 5.892119 TCGTAGATCTGGTACCTCAAAGATT 59.108 40.000 14.36 6.66 29.59 2.40
2488 2625 5.446860 TCGTAGATCTGGTACCTCAAAGAT 58.553 41.667 14.36 12.61 32.10 2.40
2489 2626 4.851843 TCGTAGATCTGGTACCTCAAAGA 58.148 43.478 14.36 7.83 0.00 2.52
2490 2627 4.036971 CCTCGTAGATCTGGTACCTCAAAG 59.963 50.000 14.36 1.64 33.89 2.77
2491 2628 3.952323 CCTCGTAGATCTGGTACCTCAAA 59.048 47.826 14.36 0.00 33.89 2.69
2498 2635 4.104261 TCCTCAATCCTCGTAGATCTGGTA 59.896 45.833 5.18 0.00 33.89 3.25
2509 2646 6.537453 AATATAGATGGTCCTCAATCCTCG 57.463 41.667 0.00 0.00 0.00 4.63
2521 2658 6.070194 CGATACCTTCCCCAAATATAGATGGT 60.070 42.308 5.99 0.00 39.38 3.55
2526 2663 4.019681 TGGCGATACCTTCCCCAAATATAG 60.020 45.833 0.00 0.00 40.22 1.31
2527 2664 3.911260 TGGCGATACCTTCCCCAAATATA 59.089 43.478 0.00 0.00 40.22 0.86
2528 2665 2.714250 TGGCGATACCTTCCCCAAATAT 59.286 45.455 0.00 0.00 40.22 1.28
2529 2666 2.105821 CTGGCGATACCTTCCCCAAATA 59.894 50.000 0.00 0.00 40.22 1.40
2530 2667 0.923358 TGGCGATACCTTCCCCAAAT 59.077 50.000 0.00 0.00 40.22 2.32
2531 2668 0.254747 CTGGCGATACCTTCCCCAAA 59.745 55.000 0.00 0.00 40.22 3.28
2532 2669 1.912220 CTGGCGATACCTTCCCCAA 59.088 57.895 0.00 0.00 40.22 4.12
2533 2670 2.742116 GCTGGCGATACCTTCCCCA 61.742 63.158 0.00 0.00 40.22 4.96
2534 2671 2.111251 GCTGGCGATACCTTCCCC 59.889 66.667 0.00 0.00 40.22 4.81
2535 2672 1.227674 CTGCTGGCGATACCTTCCC 60.228 63.158 0.00 0.00 40.22 3.97
2536 2673 1.889573 GCTGCTGGCGATACCTTCC 60.890 63.158 0.00 0.00 40.22 3.46
2537 2674 0.744414 TTGCTGCTGGCGATACCTTC 60.744 55.000 0.00 0.00 45.43 3.46
2538 2675 0.322456 TTTGCTGCTGGCGATACCTT 60.322 50.000 0.00 0.00 45.43 3.50
2539 2676 0.322456 TTTTGCTGCTGGCGATACCT 60.322 50.000 0.00 0.00 45.43 3.08
2540 2677 0.525761 TTTTTGCTGCTGGCGATACC 59.474 50.000 0.00 0.00 45.43 2.73
2541 2678 2.566952 ATTTTTGCTGCTGGCGATAC 57.433 45.000 0.00 0.00 45.43 2.24
2542 2679 3.694072 ACTAATTTTTGCTGCTGGCGATA 59.306 39.130 0.00 0.00 45.43 2.92
2543 2680 2.493278 ACTAATTTTTGCTGCTGGCGAT 59.507 40.909 0.00 0.00 45.43 4.58
2544 2681 1.885887 ACTAATTTTTGCTGCTGGCGA 59.114 42.857 0.00 0.00 45.43 5.54
2545 2682 1.987770 CACTAATTTTTGCTGCTGGCG 59.012 47.619 0.00 0.00 45.43 5.69
2546 2683 1.728425 GCACTAATTTTTGCTGCTGGC 59.272 47.619 0.00 0.00 42.22 4.85
2553 2690 4.243007 ACAGTGGAGCACTAATTTTTGC 57.757 40.909 0.00 3.34 43.43 3.68
2554 2691 6.042143 ACAAACAGTGGAGCACTAATTTTTG 58.958 36.000 5.36 5.36 43.43 2.44
2555 2692 6.220726 ACAAACAGTGGAGCACTAATTTTT 57.779 33.333 0.00 0.00 43.43 1.94
2556 2693 5.221244 GGACAAACAGTGGAGCACTAATTTT 60.221 40.000 0.00 0.00 43.43 1.82
2557 2694 4.278419 GGACAAACAGTGGAGCACTAATTT 59.722 41.667 0.00 0.00 43.43 1.82
2558 2695 3.821033 GGACAAACAGTGGAGCACTAATT 59.179 43.478 0.00 0.00 43.43 1.40
2559 2696 3.181445 TGGACAAACAGTGGAGCACTAAT 60.181 43.478 0.00 0.00 43.43 1.73
2560 2697 2.171659 TGGACAAACAGTGGAGCACTAA 59.828 45.455 0.00 0.00 43.43 2.24
2561 2698 1.765904 TGGACAAACAGTGGAGCACTA 59.234 47.619 0.00 0.00 43.43 2.74
2562 2699 0.546122 TGGACAAACAGTGGAGCACT 59.454 50.000 0.00 0.00 46.51 4.40
2563 2700 1.609208 ATGGACAAACAGTGGAGCAC 58.391 50.000 0.00 0.00 34.10 4.40
2564 2701 2.363306 AATGGACAAACAGTGGAGCA 57.637 45.000 0.00 0.00 0.00 4.26
2565 2702 2.029918 GGAAATGGACAAACAGTGGAGC 60.030 50.000 0.00 0.00 0.00 4.70
2566 2703 3.221771 TGGAAATGGACAAACAGTGGAG 58.778 45.455 0.00 0.00 0.00 3.86
2567 2704 3.221771 CTGGAAATGGACAAACAGTGGA 58.778 45.455 0.00 0.00 0.00 4.02
2568 2705 2.288395 GCTGGAAATGGACAAACAGTGG 60.288 50.000 0.00 0.00 0.00 4.00
2569 2706 2.361757 TGCTGGAAATGGACAAACAGTG 59.638 45.455 0.00 0.00 0.00 3.66
2570 2707 2.362077 GTGCTGGAAATGGACAAACAGT 59.638 45.455 0.00 0.00 0.00 3.55
2571 2708 2.605338 CGTGCTGGAAATGGACAAACAG 60.605 50.000 0.00 0.00 0.00 3.16
2572 2709 1.336440 CGTGCTGGAAATGGACAAACA 59.664 47.619 0.00 0.00 0.00 2.83
2573 2710 1.930371 GCGTGCTGGAAATGGACAAAC 60.930 52.381 0.00 0.00 0.00 2.93
2574 2711 0.313672 GCGTGCTGGAAATGGACAAA 59.686 50.000 0.00 0.00 0.00 2.83
2575 2712 1.851021 CGCGTGCTGGAAATGGACAA 61.851 55.000 0.00 0.00 0.00 3.18
2576 2713 2.324330 CGCGTGCTGGAAATGGACA 61.324 57.895 0.00 0.00 0.00 4.02
2577 2714 1.573829 TTCGCGTGCTGGAAATGGAC 61.574 55.000 5.77 0.00 0.00 4.02
2578 2715 1.298157 CTTCGCGTGCTGGAAATGGA 61.298 55.000 5.77 0.00 0.00 3.41
2579 2716 1.135315 CTTCGCGTGCTGGAAATGG 59.865 57.895 5.77 0.00 0.00 3.16
2580 2717 1.512734 GCTTCGCGTGCTGGAAATG 60.513 57.895 16.74 0.00 0.00 2.32
2581 2718 2.690778 GGCTTCGCGTGCTGGAAAT 61.691 57.895 21.30 0.00 0.00 2.17
2582 2719 2.443260 TAGGCTTCGCGTGCTGGAAA 62.443 55.000 21.30 0.93 0.00 3.13
2583 2720 2.238847 ATAGGCTTCGCGTGCTGGAA 62.239 55.000 21.30 1.61 0.00 3.53
2584 2721 2.238847 AATAGGCTTCGCGTGCTGGA 62.239 55.000 21.30 10.79 0.00 3.86
2585 2722 1.369091 AAATAGGCTTCGCGTGCTGG 61.369 55.000 21.30 4.92 0.00 4.85
2586 2723 0.247814 CAAATAGGCTTCGCGTGCTG 60.248 55.000 21.30 11.04 0.00 4.41
2587 2724 1.369091 CCAAATAGGCTTCGCGTGCT 61.369 55.000 21.30 12.62 0.00 4.40
2588 2725 1.062525 CCAAATAGGCTTCGCGTGC 59.937 57.895 5.77 12.24 0.00 5.34
2589 2726 0.742990 TCCCAAATAGGCTTCGCGTG 60.743 55.000 5.77 1.17 35.39 5.34
2590 2727 0.035820 TTCCCAAATAGGCTTCGCGT 60.036 50.000 5.77 0.00 35.39 6.01
2591 2728 0.377203 GTTCCCAAATAGGCTTCGCG 59.623 55.000 0.00 0.00 35.39 5.87
2592 2729 0.738975 GGTTCCCAAATAGGCTTCGC 59.261 55.000 0.00 0.00 35.39 4.70
2593 2730 1.064685 AGGGTTCCCAAATAGGCTTCG 60.065 52.381 10.73 0.00 35.39 3.79
2594 2731 2.828661 AGGGTTCCCAAATAGGCTTC 57.171 50.000 10.73 0.00 35.39 3.86
2595 2732 2.654896 AGAAGGGTTCCCAAATAGGCTT 59.345 45.455 10.73 0.00 35.39 4.35
2596 2733 2.024941 CAGAAGGGTTCCCAAATAGGCT 60.025 50.000 10.73 0.00 35.39 4.58
2597 2734 2.379005 CAGAAGGGTTCCCAAATAGGC 58.621 52.381 10.73 0.00 35.39 3.93
2598 2735 2.950418 GCCAGAAGGGTTCCCAAATAGG 60.950 54.545 10.73 6.38 39.65 2.57
2599 2736 2.379005 GCCAGAAGGGTTCCCAAATAG 58.621 52.381 10.73 0.00 39.65 1.73
2600 2737 1.006639 GGCCAGAAGGGTTCCCAAATA 59.993 52.381 10.73 0.00 39.65 1.40
2601 2738 0.252239 GGCCAGAAGGGTTCCCAAAT 60.252 55.000 10.73 0.00 39.65 2.32
2602 2739 1.155155 GGCCAGAAGGGTTCCCAAA 59.845 57.895 10.73 0.00 39.65 3.28
2603 2740 2.080336 CTGGCCAGAAGGGTTCCCAA 62.080 60.000 29.88 0.00 39.65 4.12
2604 2741 2.451493 TGGCCAGAAGGGTTCCCA 60.451 61.111 0.00 0.00 39.65 4.37
2605 2742 2.356667 CTGGCCAGAAGGGTTCCC 59.643 66.667 29.88 0.00 39.65 3.97
2606 2743 2.361737 GCTGGCCAGAAGGGTTCC 60.362 66.667 37.21 12.12 39.65 3.62
2607 2744 2.361737 GGCTGGCCAGAAGGGTTC 60.362 66.667 37.21 16.19 39.65 3.62
2608 2745 3.984732 GGGCTGGCCAGAAGGGTT 61.985 66.667 37.21 0.00 39.65 4.11
2610 2747 3.747579 ATGGGCTGGCCAGAAGGG 61.748 66.667 37.21 11.21 37.98 3.95
2611 2748 2.441532 CATGGGCTGGCCAGAAGG 60.442 66.667 37.21 18.07 37.98 3.46
2612 2749 2.050350 CACATGGGCTGGCCAGAAG 61.050 63.158 37.21 20.65 37.98 2.85
2613 2750 2.036098 CACATGGGCTGGCCAGAA 59.964 61.111 37.21 20.61 37.98 3.02
2614 2751 4.746309 GCACATGGGCTGGCCAGA 62.746 66.667 37.21 16.68 37.98 3.86
2624 2761 3.061848 GTCCCAACCCGCACATGG 61.062 66.667 0.00 0.00 0.00 3.66
2625 2762 3.430862 CGTCCCAACCCGCACATG 61.431 66.667 0.00 0.00 0.00 3.21
2631 2768 3.387947 AGTAGGCGTCCCAACCCG 61.388 66.667 0.00 0.00 0.00 5.28
2632 2769 2.120737 AACAGTAGGCGTCCCAACCC 62.121 60.000 0.00 0.00 0.00 4.11
2633 2770 0.250597 AAACAGTAGGCGTCCCAACC 60.251 55.000 0.00 0.00 0.00 3.77
2634 2771 1.601166 AAAACAGTAGGCGTCCCAAC 58.399 50.000 0.00 0.00 0.00 3.77
2635 2772 2.351706 AAAAACAGTAGGCGTCCCAA 57.648 45.000 0.00 0.00 0.00 4.12
2661 2798 9.853177 ATTTAGAACTTCTTGATATCCCGAATT 57.147 29.630 0.00 0.00 0.00 2.17
2662 2799 9.853177 AATTTAGAACTTCTTGATATCCCGAAT 57.147 29.630 0.00 0.00 0.00 3.34
2663 2800 9.681062 AAATTTAGAACTTCTTGATATCCCGAA 57.319 29.630 0.00 2.29 0.00 4.30
2664 2801 9.326413 GAAATTTAGAACTTCTTGATATCCCGA 57.674 33.333 0.00 0.00 0.00 5.14
2665 2802 9.109393 TGAAATTTAGAACTTCTTGATATCCCG 57.891 33.333 0.00 0.00 0.00 5.14
2734 2871 8.558700 GCACATTTTCTTAAACCATGAACATTT 58.441 29.630 0.00 0.00 0.00 2.32
2735 2872 7.714377 TGCACATTTTCTTAAACCATGAACATT 59.286 29.630 0.00 0.00 0.00 2.71
2736 2873 7.215789 TGCACATTTTCTTAAACCATGAACAT 58.784 30.769 0.00 0.00 0.00 2.71
2737 2874 6.577103 TGCACATTTTCTTAAACCATGAACA 58.423 32.000 0.00 0.00 0.00 3.18
2738 2875 7.384660 TCATGCACATTTTCTTAAACCATGAAC 59.615 33.333 0.00 0.00 35.14 3.18
2739 2876 7.440198 TCATGCACATTTTCTTAAACCATGAA 58.560 30.769 0.00 0.00 35.14 2.57
2740 2877 6.990798 TCATGCACATTTTCTTAAACCATGA 58.009 32.000 0.00 0.00 35.54 3.07
2741 2878 7.655236 TTCATGCACATTTTCTTAAACCATG 57.345 32.000 0.00 0.00 0.00 3.66
2742 2879 8.851541 AATTCATGCACATTTTCTTAAACCAT 57.148 26.923 0.00 0.00 0.00 3.55
2743 2880 8.674263 AAATTCATGCACATTTTCTTAAACCA 57.326 26.923 0.00 0.00 0.00 3.67
2791 2928 9.300681 TGAACATTCTCTTAAATCCTGAACATT 57.699 29.630 0.00 0.00 0.00 2.71
2792 2929 8.868522 TGAACATTCTCTTAAATCCTGAACAT 57.131 30.769 0.00 0.00 0.00 2.71
2793 2930 8.733458 CATGAACATTCTCTTAAATCCTGAACA 58.267 33.333 0.00 0.00 0.00 3.18
2794 2931 8.186821 CCATGAACATTCTCTTAAATCCTGAAC 58.813 37.037 0.00 0.00 0.00 3.18
2795 2932 8.108999 TCCATGAACATTCTCTTAAATCCTGAA 58.891 33.333 0.00 0.00 0.00 3.02
2796 2933 7.632861 TCCATGAACATTCTCTTAAATCCTGA 58.367 34.615 0.00 0.00 0.00 3.86
2797 2934 7.555554 ACTCCATGAACATTCTCTTAAATCCTG 59.444 37.037 0.00 0.00 0.00 3.86
2798 2935 7.637511 ACTCCATGAACATTCTCTTAAATCCT 58.362 34.615 0.00 0.00 0.00 3.24
2799 2936 7.872113 ACTCCATGAACATTCTCTTAAATCC 57.128 36.000 0.00 0.00 0.00 3.01
2827 2964 9.495572 ACCTTTTGAAGTTTGTGAACATTTTAA 57.504 25.926 0.00 0.00 38.26 1.52
2828 2965 9.495572 AACCTTTTGAAGTTTGTGAACATTTTA 57.504 25.926 0.00 0.00 38.26 1.52
2829 2966 7.977789 ACCTTTTGAAGTTTGTGAACATTTT 57.022 28.000 0.00 0.00 38.26 1.82
2830 2967 7.659390 TGAACCTTTTGAAGTTTGTGAACATTT 59.341 29.630 0.00 0.00 38.26 2.32
2831 2968 7.158021 TGAACCTTTTGAAGTTTGTGAACATT 58.842 30.769 0.00 0.00 38.26 2.71
2832 2969 6.696411 TGAACCTTTTGAAGTTTGTGAACAT 58.304 32.000 0.00 0.00 38.26 2.71
2833 2970 6.090483 TGAACCTTTTGAAGTTTGTGAACA 57.910 33.333 0.00 0.00 38.26 3.18
2834 2971 6.811170 TGATGAACCTTTTGAAGTTTGTGAAC 59.189 34.615 0.00 0.00 35.97 3.18
2835 2972 6.929625 TGATGAACCTTTTGAAGTTTGTGAA 58.070 32.000 0.00 0.00 0.00 3.18
2836 2973 6.522625 TGATGAACCTTTTGAAGTTTGTGA 57.477 33.333 0.00 0.00 0.00 3.58
2837 2974 7.775397 AATGATGAACCTTTTGAAGTTTGTG 57.225 32.000 0.00 0.00 0.00 3.33
2838 2975 8.791327 AAAATGATGAACCTTTTGAAGTTTGT 57.209 26.923 0.00 0.00 0.00 2.83
2840 2977 9.883142 TGTAAAATGATGAACCTTTTGAAGTTT 57.117 25.926 0.00 0.00 31.12 2.66
2841 2978 9.883142 TTGTAAAATGATGAACCTTTTGAAGTT 57.117 25.926 0.00 0.00 31.12 2.66
2842 2979 9.883142 TTTGTAAAATGATGAACCTTTTGAAGT 57.117 25.926 0.00 0.00 31.12 3.01
2845 2982 8.825745 GCTTTTGTAAAATGATGAACCTTTTGA 58.174 29.630 0.00 0.00 31.12 2.69
2846 2983 7.793427 CGCTTTTGTAAAATGATGAACCTTTTG 59.207 33.333 0.00 0.00 31.12 2.44
2847 2984 7.494298 ACGCTTTTGTAAAATGATGAACCTTTT 59.506 29.630 0.00 0.00 32.74 2.27
2848 2985 6.983890 ACGCTTTTGTAAAATGATGAACCTTT 59.016 30.769 0.00 0.00 0.00 3.11
2849 2986 6.420604 CACGCTTTTGTAAAATGATGAACCTT 59.579 34.615 0.00 0.00 0.00 3.50
2850 2987 5.920273 CACGCTTTTGTAAAATGATGAACCT 59.080 36.000 0.00 0.00 0.00 3.50
2851 2988 5.918011 TCACGCTTTTGTAAAATGATGAACC 59.082 36.000 0.00 0.00 0.00 3.62
2852 2989 6.984740 TCACGCTTTTGTAAAATGATGAAC 57.015 33.333 0.00 0.00 0.00 3.18
2853 2990 8.586570 AATTCACGCTTTTGTAAAATGATGAA 57.413 26.923 10.07 10.07 0.00 2.57
2854 2991 8.586570 AAATTCACGCTTTTGTAAAATGATGA 57.413 26.923 0.00 0.00 0.00 2.92
2861 2998 9.907576 CATGTTTTAAATTCACGCTTTTGTAAA 57.092 25.926 0.00 0.00 0.00 2.01
2862 2999 9.088512 ACATGTTTTAAATTCACGCTTTTGTAA 57.911 25.926 0.00 0.00 0.00 2.41
2863 3000 8.635877 ACATGTTTTAAATTCACGCTTTTGTA 57.364 26.923 0.00 0.00 0.00 2.41
2864 3001 7.532682 ACATGTTTTAAATTCACGCTTTTGT 57.467 28.000 0.00 0.00 0.00 2.83
2865 3002 8.113062 TGAACATGTTTTAAATTCACGCTTTTG 58.887 29.630 13.36 0.00 0.00 2.44
2866 3003 8.190888 TGAACATGTTTTAAATTCACGCTTTT 57.809 26.923 13.36 0.00 0.00 2.27
2867 3004 7.763172 TGAACATGTTTTAAATTCACGCTTT 57.237 28.000 13.36 0.00 0.00 3.51
2868 3005 7.651304 TGATGAACATGTTTTAAATTCACGCTT 59.349 29.630 13.36 0.00 32.42 4.68
2869 3006 7.144661 TGATGAACATGTTTTAAATTCACGCT 58.855 30.769 13.36 0.00 32.42 5.07
2870 3007 7.332003 TGATGAACATGTTTTAAATTCACGC 57.668 32.000 13.36 1.53 32.42 5.34
2871 3008 9.941991 GAATGATGAACATGTTTTAAATTCACG 57.058 29.630 13.36 0.00 39.39 4.35
2941 3078 9.065798 TGTGAACATTCTCTTAAATCATGAACA 57.934 29.630 0.00 0.00 0.00 3.18
2942 3079 9.897744 TTGTGAACATTCTCTTAAATCATGAAC 57.102 29.630 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.