Multiple sequence alignment - TraesCS3B01G123800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G123800 chr3B 100.000 5704 0 0 1 5704 96811410 96817113 0.000000e+00 10534.0
1 TraesCS3B01G123800 chr3B 92.261 1150 78 8 2922 4065 96842621 96843765 0.000000e+00 1620.0
2 TraesCS3B01G123800 chr3B 85.793 542 46 10 4387 4915 96844140 96844663 3.890000e-151 545.0
3 TraesCS3B01G123800 chr3D 91.537 4762 235 67 643 5340 61072035 61076692 0.000000e+00 6407.0
4 TraesCS3B01G123800 chr3D 85.556 1170 114 29 2922 4064 61194874 61196015 0.000000e+00 1173.0
5 TraesCS3B01G123800 chr3D 93.542 480 26 3 4387 4861 61196441 61196920 0.000000e+00 710.0
6 TraesCS3B01G123800 chr3D 89.587 557 52 3 4 560 61071446 61071996 0.000000e+00 702.0
7 TraesCS3B01G123800 chr3D 95.745 94 3 1 5520 5613 61095899 61095991 3.560000e-32 150.0
8 TraesCS3B01G123800 chr3D 82.222 90 11 5 525 611 84676277 84676190 7.930000e-09 73.1
9 TraesCS3B01G123800 chr3A 90.848 4786 318 44 4 4741 69289737 69294450 0.000000e+00 6301.0
10 TraesCS3B01G123800 chr3A 88.148 270 31 1 3801 4069 69307841 69308110 2.560000e-83 320.0
11 TraesCS3B01G123800 chr3A 78.621 290 42 4 4380 4649 69308472 69308761 2.110000e-39 174.0
12 TraesCS3B01G123800 chr3A 86.567 67 7 2 555 619 63135234 63135168 7.930000e-09 73.1
13 TraesCS3B01G123800 chr7D 84.871 1322 175 18 2763 4073 8354867 8356174 0.000000e+00 1310.0
14 TraesCS3B01G123800 chr4A 84.230 1319 175 24 2767 4073 731399152 731397855 0.000000e+00 1253.0
15 TraesCS3B01G123800 chr7A 82.933 1166 175 16 2919 4073 8789498 8790650 0.000000e+00 1029.0
16 TraesCS3B01G123800 chr7A 87.343 877 108 3 2864 3738 8997768 8996893 0.000000e+00 1002.0
17 TraesCS3B01G123800 chr7A 86.517 267 27 8 3804 4063 8996886 8996622 9.350000e-73 285.0
18 TraesCS3B01G123800 chr2D 89.504 343 32 4 37 377 598718528 598718868 1.140000e-116 431.0
19 TraesCS3B01G123800 chr2D 80.261 613 77 22 3481 4073 638147186 638147774 6.830000e-114 422.0
20 TraesCS3B01G123800 chr2D 86.567 67 7 2 555 619 650860456 650860522 7.930000e-09 73.1
21 TraesCS3B01G123800 chr2A 80.033 601 99 13 3481 4073 764091127 764090540 5.280000e-115 425.0
22 TraesCS3B01G123800 chr2A 86.080 352 44 5 29 377 633949196 633948847 1.940000e-99 374.0
23 TraesCS3B01G123800 chr2A 82.500 80 11 3 512 589 35912012 35912090 3.690000e-07 67.6
24 TraesCS3B01G123800 chr2B 87.826 345 38 4 36 377 726552340 726552683 8.900000e-108 401.0
25 TraesCS3B01G123800 chr2B 79.870 154 24 7 468 619 290680241 290680389 7.820000e-19 106.0
26 TraesCS3B01G123800 chr6B 87.679 349 35 8 35 377 558517151 558517497 3.200000e-107 399.0
27 TraesCS3B01G123800 chr6B 93.878 49 3 0 5654 5702 436490892 436490844 2.200000e-09 75.0
28 TraesCS3B01G123800 chr7B 87.464 343 39 4 36 376 92558754 92559094 5.360000e-105 392.0
29 TraesCS3B01G123800 chr7B 82.353 119 16 5 506 620 61074259 61074142 1.310000e-16 99.0
30 TraesCS3B01G123800 chr7B 85.227 88 9 4 496 581 577381510 577381425 2.830000e-13 87.9
31 TraesCS3B01G123800 chr4D 87.172 343 39 5 36 376 297073692 297074031 8.970000e-103 385.0
32 TraesCS3B01G123800 chr1A 87.135 342 38 4 37 376 313906866 313906529 3.220000e-102 383.0
33 TraesCS3B01G123800 chr1A 84.848 66 7 3 521 584 520574671 520574735 4.770000e-06 63.9
34 TraesCS3B01G123800 chr1D 84.615 130 14 6 496 621 46360099 46359972 2.160000e-24 124.0
35 TraesCS3B01G123800 chr5A 97.619 42 0 1 5663 5704 123131011 123130971 2.850000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G123800 chr3B 96811410 96817113 5703 False 10534.0 10534 100.0000 1 5704 1 chr3B.!!$F1 5703
1 TraesCS3B01G123800 chr3B 96842621 96844663 2042 False 1082.5 1620 89.0270 2922 4915 2 chr3B.!!$F2 1993
2 TraesCS3B01G123800 chr3D 61071446 61076692 5246 False 3554.5 6407 90.5620 4 5340 2 chr3D.!!$F2 5336
3 TraesCS3B01G123800 chr3D 61194874 61196920 2046 False 941.5 1173 89.5490 2922 4861 2 chr3D.!!$F3 1939
4 TraesCS3B01G123800 chr3A 69289737 69294450 4713 False 6301.0 6301 90.8480 4 4741 1 chr3A.!!$F1 4737
5 TraesCS3B01G123800 chr3A 69307841 69308761 920 False 247.0 320 83.3845 3801 4649 2 chr3A.!!$F2 848
6 TraesCS3B01G123800 chr7D 8354867 8356174 1307 False 1310.0 1310 84.8710 2763 4073 1 chr7D.!!$F1 1310
7 TraesCS3B01G123800 chr4A 731397855 731399152 1297 True 1253.0 1253 84.2300 2767 4073 1 chr4A.!!$R1 1306
8 TraesCS3B01G123800 chr7A 8789498 8790650 1152 False 1029.0 1029 82.9330 2919 4073 1 chr7A.!!$F1 1154
9 TraesCS3B01G123800 chr7A 8996622 8997768 1146 True 643.5 1002 86.9300 2864 4063 2 chr7A.!!$R1 1199
10 TraesCS3B01G123800 chr2D 638147186 638147774 588 False 422.0 422 80.2610 3481 4073 1 chr2D.!!$F2 592
11 TraesCS3B01G123800 chr2A 764090540 764091127 587 True 425.0 425 80.0330 3481 4073 1 chr2A.!!$R2 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 456 0.539518 TCCGCCAGTGCTGCTATAAA 59.460 50.0 0.00 0.0 34.43 1.40 F
1679 1725 0.586319 TCTTTTCTTTCTGCACGCGG 59.414 50.0 12.47 0.0 0.00 6.46 F
2133 2194 0.697854 AGCACCTTTCCCCCGGATAT 60.698 55.0 0.73 0.0 0.00 1.63 F
2826 2898 0.027586 GCCCGTGTATCGTTTGATGC 59.972 55.0 0.00 0.0 37.68 3.91 F
4199 4348 0.609131 AAATGACGCAGACTTGGGGG 60.609 55.0 0.00 0.0 41.26 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 1927 0.606401 AATGACACGGCACCTCAAGG 60.606 55.000 0.00 0.0 42.17 3.61 R
2521 2593 0.323178 CCCAGCCTCTGCATCAAAGT 60.323 55.000 0.00 0.0 41.13 2.66 R
3040 3112 1.063190 TGACCGGACTACCATCTCCAT 60.063 52.381 9.46 0.0 35.59 3.41 R
4475 4963 0.311790 CCAGCACATTTGAACAGCGT 59.688 50.000 0.00 0.0 0.00 5.07 R
5197 5722 0.173708 GCCTCGGTAGTTCAGTCCAG 59.826 60.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 4.453136 TGATGATGTTGTGTGTCTGTCATG 59.547 41.667 0.00 0.00 0.00 3.07
86 87 3.807553 TGATGTTGTGTGTCTGTCATGT 58.192 40.909 0.00 0.00 0.00 3.21
94 95 4.639755 TGTGTGTCTGTCATGTGTCATTTT 59.360 37.500 0.00 0.00 0.00 1.82
126 127 5.288015 AGATCTGCATCTAACGATTGTGAG 58.712 41.667 0.00 0.00 37.63 3.51
137 138 4.330944 ACGATTGTGAGGTAAGTTGTGA 57.669 40.909 0.00 0.00 0.00 3.58
148 149 4.649218 AGGTAAGTTGTGACCTTTTGCAAT 59.351 37.500 0.00 0.00 43.87 3.56
155 156 6.209391 AGTTGTGACCTTTTGCAATAATAGCT 59.791 34.615 0.00 0.00 0.00 3.32
156 157 6.588719 TGTGACCTTTTGCAATAATAGCTT 57.411 33.333 0.00 0.00 0.00 3.74
159 160 7.393234 TGTGACCTTTTGCAATAATAGCTTACT 59.607 33.333 0.00 0.00 0.00 2.24
186 187 2.871637 GCTCCAATTTGCAGAAAACCCC 60.872 50.000 0.00 0.00 0.00 4.95
206 207 5.073965 ACCCCTTAGTATCTTGAAACCAACA 59.926 40.000 0.00 0.00 0.00 3.33
222 223 1.352352 CAACAACATCCCTCCCTCACT 59.648 52.381 0.00 0.00 0.00 3.41
240 241 2.489329 CACTTCATCAAAACAGCCCGAT 59.511 45.455 0.00 0.00 0.00 4.18
254 255 8.458573 AAACAGCCCGATGAATATATTTTGTA 57.541 30.769 0.00 0.00 0.00 2.41
255 256 7.435068 ACAGCCCGATGAATATATTTTGTAC 57.565 36.000 0.00 0.00 0.00 2.90
319 320 4.802876 AGAGCGTCTTCTTTCAAGTTTG 57.197 40.909 0.00 0.00 0.00 2.93
444 445 2.028020 GCCTTATTATAGCTCCGCCAGT 60.028 50.000 0.00 0.00 0.00 4.00
445 446 3.589988 CCTTATTATAGCTCCGCCAGTG 58.410 50.000 0.00 0.00 0.00 3.66
446 447 2.743636 TATTATAGCTCCGCCAGTGC 57.256 50.000 0.00 0.00 35.13 4.40
455 456 0.539518 TCCGCCAGTGCTGCTATAAA 59.460 50.000 0.00 0.00 34.43 1.40
475 476 4.313020 AAGCAGAAGGAAGATGGTGATT 57.687 40.909 0.00 0.00 0.00 2.57
514 515 9.931210 ACTTTTGTTTAATTTCTTACTCACTCG 57.069 29.630 0.00 0.00 0.00 4.18
540 541 5.127519 TCCGGAATTACTTGTCGGAGAAATA 59.872 40.000 0.00 0.00 43.84 1.40
668 670 2.034179 GGTTTTATTGTATGCCCTCCGC 59.966 50.000 0.00 0.00 38.31 5.54
673 675 2.111251 GTATGCCCTCCGCCCTTC 59.889 66.667 0.00 0.00 36.24 3.46
723 725 5.729974 AGAAAATAACGGAGCGAAATACC 57.270 39.130 0.00 0.00 0.00 2.73
788 790 1.273887 GCCTGATCGATTTGCGTCG 59.726 57.895 0.00 0.16 42.74 5.12
795 797 2.958576 GATTTGCGTCGGGCCAAA 59.041 55.556 4.39 0.00 42.61 3.28
822 824 0.638292 ATTGCCATGAATCCCACCCT 59.362 50.000 0.00 0.00 0.00 4.34
836 838 7.397761 TGAATCCCACCCTCGTTTAATTTATTT 59.602 33.333 0.00 0.00 0.00 1.40
838 840 6.011481 TCCCACCCTCGTTTAATTTATTTGT 58.989 36.000 0.00 0.00 0.00 2.83
841 843 8.305317 CCCACCCTCGTTTAATTTATTTGTTTA 58.695 33.333 0.00 0.00 0.00 2.01
868 880 3.457610 ACAAAAATGGTGTGGCTCTTG 57.542 42.857 0.00 0.00 0.00 3.02
890 903 5.837829 TGGCTTTGATATTAAACCTCCCTT 58.162 37.500 10.63 0.00 0.00 3.95
970 1006 2.272797 CTCTCCCGACTCCCGAGT 59.727 66.667 0.00 0.00 45.84 4.18
1064 1100 2.885113 CGACAGCGTCTCCATGGA 59.115 61.111 15.27 15.27 0.00 3.41
1546 1592 1.684049 CTCTTCCAGGTCCGCCTCT 60.684 63.158 0.00 0.00 44.97 3.69
1550 1596 4.787280 CCAGGTCCGCCTCTCCCT 62.787 72.222 0.00 0.00 44.97 4.20
1679 1725 0.586319 TCTTTTCTTTCTGCACGCGG 59.414 50.000 12.47 0.00 0.00 6.46
1684 1730 4.243008 TTTCTGCACGCGGGGACA 62.243 61.111 11.92 0.00 0.00 4.02
1688 1734 2.596046 TGCACGCGGGGACATTTT 60.596 55.556 11.92 0.00 0.00 1.82
1723 1769 1.815757 TGGGCTTAGATCCCCTTACC 58.184 55.000 6.36 0.00 43.24 2.85
1781 1827 8.138712 TCTGAAAAATAGCGTTAAACATTGGTT 58.861 29.630 0.00 0.00 39.43 3.67
1869 1915 5.599732 TGGTGAAGTTGTCAATGGAAATTG 58.400 37.500 0.00 0.00 38.23 2.32
1881 1927 5.242838 TCAATGGAAATTGTACAGTTGGGAC 59.757 40.000 4.17 0.00 33.49 4.46
1980 2038 7.599621 TGGTAATTGTTCATTGCTCAAAGAATG 59.400 33.333 4.00 0.00 31.84 2.67
2131 2192 2.614013 AGCACCTTTCCCCCGGAT 60.614 61.111 0.73 0.00 0.00 4.18
2133 2194 0.697854 AGCACCTTTCCCCCGGATAT 60.698 55.000 0.73 0.00 0.00 1.63
2191 2259 2.738521 CAACACCGGGAGTCTGCG 60.739 66.667 6.32 0.00 0.00 5.18
2195 2263 3.374402 ACCGGGAGTCTGCGACAG 61.374 66.667 6.32 0.00 34.60 3.51
2251 2320 0.865769 GGGTGTCAGTGTGTAAAGCG 59.134 55.000 0.00 0.00 0.00 4.68
2303 2372 5.705609 TTGCTCCACAACTCCTTAATTTC 57.294 39.130 0.00 0.00 31.73 2.17
2342 2411 7.798596 ATTAATGTTATTCTGAGCAGGAGTG 57.201 36.000 0.00 0.00 0.00 3.51
2367 2436 5.873179 TTGATAGTGAACGCCCTTTTTAG 57.127 39.130 0.00 0.00 0.00 1.85
2395 2464 4.445879 CCAGTCATCAATCCATGGATCTGT 60.446 45.833 27.45 9.74 33.08 3.41
2472 2543 6.583912 TTGTATTCTAATGTACTTGCGAGC 57.416 37.500 0.00 0.00 0.00 5.03
2487 2559 4.495911 TGCGAGCATTTGAAACACATAA 57.504 36.364 0.00 0.00 0.00 1.90
2547 2619 0.327095 TGCAGAGGCTGGGGGTAATA 60.327 55.000 0.00 0.00 41.91 0.98
2551 2623 3.691311 GCAGAGGCTGGGGGTAATAAAAT 60.691 47.826 0.00 0.00 36.96 1.82
2605 2677 3.099141 ACAGGGCTGTAATCAAATTGGG 58.901 45.455 0.00 0.00 42.90 4.12
2623 2695 9.434420 CAAATTGGGTTAATCAATGTATGTGTT 57.566 29.630 7.47 0.00 35.31 3.32
2681 2753 8.301720 ACCGTTTATGCGTCTATATTCTTATCA 58.698 33.333 0.00 0.00 0.00 2.15
2688 2760 8.047413 TGCGTCTATATTCTTATCAATCCGTA 57.953 34.615 0.00 0.00 0.00 4.02
2698 2770 2.309528 TCAATCCGTATGGCTGTGTC 57.690 50.000 0.00 0.00 34.14 3.67
2756 2828 7.765307 TGATATGCTTTTCCTTCTTAGCTTTG 58.235 34.615 0.00 0.00 34.77 2.77
2757 2829 7.394359 TGATATGCTTTTCCTTCTTAGCTTTGT 59.606 33.333 0.00 0.00 34.77 2.83
2762 2834 7.024171 GCTTTTCCTTCTTAGCTTTGTCATAC 58.976 38.462 0.00 0.00 0.00 2.39
2765 2837 6.605471 TCCTTCTTAGCTTTGTCATACTGA 57.395 37.500 0.00 0.00 0.00 3.41
2804 2876 1.479730 TCTGACTTCGCTGCAGATGAT 59.520 47.619 20.43 0.00 34.02 2.45
2809 2881 0.452987 TTCGCTGCAGATGATTTGCC 59.547 50.000 20.43 0.00 40.81 4.52
2810 2882 1.065273 CGCTGCAGATGATTTGCCC 59.935 57.895 20.43 0.00 40.81 5.36
2813 2885 0.099968 CTGCAGATGATTTGCCCGTG 59.900 55.000 8.42 0.00 40.81 4.94
2818 2890 2.221749 CAGATGATTTGCCCGTGTATCG 59.778 50.000 0.00 0.00 39.52 2.92
2826 2898 0.027586 GCCCGTGTATCGTTTGATGC 59.972 55.000 0.00 0.00 37.68 3.91
2834 2906 5.052304 CGTGTATCGTTTGATGCTAACTCTC 60.052 44.000 0.00 0.00 37.99 3.20
2859 2931 4.980434 TCGACTTGCTACTTGTAACAGTTC 59.020 41.667 0.00 0.00 0.00 3.01
2869 2941 8.648968 GCTACTTGTAACAGTTCTCTATTGTTC 58.351 37.037 0.00 0.00 36.52 3.18
2894 2966 5.947503 TTGTTTCATGTTTTTGAGAAGCG 57.052 34.783 0.00 0.00 0.00 4.68
3040 3112 3.059884 GTGAAACTGTTCGAGAGATGCA 58.940 45.455 0.00 0.00 41.60 3.96
3450 3522 3.897122 AAAGGTGCCCGGCCTTCA 61.897 61.111 11.73 0.00 44.84 3.02
3510 3582 5.192927 TCAAAGAGACTCACAAAACATGGT 58.807 37.500 5.02 0.00 0.00 3.55
3619 3691 3.549299 CACAACTTGGAGAAGCATCAC 57.451 47.619 0.00 0.00 31.68 3.06
3728 3825 9.361315 GTAGTGTTCAAAATTAGTTGTTTGGTT 57.639 29.630 0.00 0.00 35.79 3.67
3731 3828 7.332182 GTGTTCAAAATTAGTTGTTTGGTTGGA 59.668 33.333 0.00 0.00 35.79 3.53
3769 3875 4.114794 GTTTTGCATGTGAAGTGAAGCTT 58.885 39.130 0.00 0.00 40.76 3.74
3774 3880 3.854784 GCATGTGAAGTGAAGCTTTCCAC 60.855 47.826 9.67 9.67 37.59 4.02
4199 4348 0.609131 AAATGACGCAGACTTGGGGG 60.609 55.000 0.00 0.00 41.26 5.40
4217 4366 2.306847 GGGGTGTGCTCAAGAAAGAAA 58.693 47.619 0.00 0.00 0.00 2.52
4218 4367 2.294512 GGGGTGTGCTCAAGAAAGAAAG 59.705 50.000 0.00 0.00 0.00 2.62
4222 4371 5.394115 GGGTGTGCTCAAGAAAGAAAGAAAA 60.394 40.000 0.00 0.00 0.00 2.29
4223 4372 6.099341 GGTGTGCTCAAGAAAGAAAGAAAAA 58.901 36.000 0.00 0.00 0.00 1.94
4225 4374 7.920682 GGTGTGCTCAAGAAAGAAAGAAAAATA 59.079 33.333 0.00 0.00 0.00 1.40
4226 4375 9.468532 GTGTGCTCAAGAAAGAAAGAAAAATAT 57.531 29.630 0.00 0.00 0.00 1.28
4227 4376 9.683069 TGTGCTCAAGAAAGAAAGAAAAATATC 57.317 29.630 0.00 0.00 0.00 1.63
4228 4377 9.683069 GTGCTCAAGAAAGAAAGAAAAATATCA 57.317 29.630 0.00 0.00 0.00 2.15
4274 4423 8.670521 AAGGTTGAAATCCCAGATTTTATTCT 57.329 30.769 4.20 0.00 0.00 2.40
4275 4424 8.298729 AGGTTGAAATCCCAGATTTTATTCTC 57.701 34.615 4.20 0.00 0.00 2.87
4276 4425 8.118600 AGGTTGAAATCCCAGATTTTATTCTCT 58.881 33.333 4.20 0.00 0.00 3.10
4321 4773 6.537301 AGTGAACCCAAATATGTACACATACG 59.463 38.462 0.00 0.00 41.15 3.06
4327 4779 7.554835 ACCCAAATATGTACACATACGAAATGT 59.445 33.333 0.00 0.00 41.15 2.71
4339 4791 6.745450 CACATACGAAATGTTAATTGGTGGTC 59.255 38.462 5.59 0.00 0.00 4.02
4396 4882 4.376819 GCGTGCATTCAGCTATAAGATGAC 60.377 45.833 0.00 0.00 40.75 3.06
4408 4896 8.072567 CAGCTATAAGATGACATTTTACCAAGC 58.927 37.037 15.09 15.09 32.38 4.01
4475 4963 0.464013 TCGGCAAACGTTTCTTCCCA 60.464 50.000 11.37 0.00 44.69 4.37
4765 5277 1.373497 CCGTCTGAAACTGCTCGCT 60.373 57.895 0.00 0.00 0.00 4.93
4886 5411 7.535139 TGCTCATTTTTGCTTGTATAGTAACC 58.465 34.615 0.00 0.00 0.00 2.85
4890 5415 8.231837 TCATTTTTGCTTGTATAGTAACCGTTC 58.768 33.333 0.00 0.00 0.00 3.95
4902 5427 7.886629 ATAGTAACCGTTCTCCATACAGTAA 57.113 36.000 0.00 0.00 0.00 2.24
4917 5442 6.319658 CCATACAGTAATTTGTTGATGGAGCT 59.680 38.462 6.33 0.00 38.57 4.09
4918 5443 7.148018 CCATACAGTAATTTGTTGATGGAGCTT 60.148 37.037 6.33 0.00 38.57 3.74
4940 5465 1.694150 TGGATCCATGTAGTAGCAGCC 59.306 52.381 11.44 0.00 0.00 4.85
4960 5485 2.089980 CCTTGGCCTCTGACTTTGATG 58.910 52.381 3.32 0.00 0.00 3.07
4976 5501 6.064060 ACTTTGATGATTGGTGAGAAACAGA 58.936 36.000 0.00 0.00 0.00 3.41
4983 5508 5.248248 TGATTGGTGAGAAACAGATGGTAGA 59.752 40.000 0.00 0.00 0.00 2.59
4984 5509 5.560722 TTGGTGAGAAACAGATGGTAGAA 57.439 39.130 0.00 0.00 0.00 2.10
4985 5510 4.894784 TGGTGAGAAACAGATGGTAGAAC 58.105 43.478 0.00 0.00 0.00 3.01
4986 5511 4.346709 TGGTGAGAAACAGATGGTAGAACA 59.653 41.667 0.00 0.00 0.00 3.18
4987 5512 5.013079 TGGTGAGAAACAGATGGTAGAACAT 59.987 40.000 0.00 0.00 0.00 2.71
4988 5513 5.940470 GGTGAGAAACAGATGGTAGAACATT 59.060 40.000 0.00 0.00 0.00 2.71
4989 5514 7.103641 GGTGAGAAACAGATGGTAGAACATTA 58.896 38.462 0.00 0.00 0.00 1.90
4990 5515 7.606456 GGTGAGAAACAGATGGTAGAACATTAA 59.394 37.037 0.00 0.00 0.00 1.40
4991 5516 8.999431 GTGAGAAACAGATGGTAGAACATTAAA 58.001 33.333 0.00 0.00 0.00 1.52
4992 5517 9.567776 TGAGAAACAGATGGTAGAACATTAAAA 57.432 29.630 0.00 0.00 0.00 1.52
5019 5544 3.755378 CAGATGGTAGTTTCTGCTTTGCT 59.245 43.478 0.00 0.00 33.56 3.91
5026 5551 4.924305 AGTTTCTGCTTTGCTTGATTGA 57.076 36.364 0.00 0.00 0.00 2.57
5032 5557 2.559231 TGCTTTGCTTGATTGATCTGCA 59.441 40.909 0.00 7.69 36.07 4.41
5049 5574 4.686972 TCTGCATGACTGAATACTAGCAC 58.313 43.478 0.00 0.00 0.00 4.40
5050 5575 4.403752 TCTGCATGACTGAATACTAGCACT 59.596 41.667 0.00 0.00 0.00 4.40
5051 5576 4.436332 TGCATGACTGAATACTAGCACTG 58.564 43.478 0.00 0.00 0.00 3.66
5052 5577 3.247173 GCATGACTGAATACTAGCACTGC 59.753 47.826 0.00 0.00 0.00 4.40
5053 5578 3.526931 TGACTGAATACTAGCACTGCC 57.473 47.619 0.00 0.00 0.00 4.85
5054 5579 2.168521 TGACTGAATACTAGCACTGCCC 59.831 50.000 0.00 0.00 0.00 5.36
5055 5580 1.486726 ACTGAATACTAGCACTGCCCC 59.513 52.381 0.00 0.00 0.00 5.80
5056 5581 1.765314 CTGAATACTAGCACTGCCCCT 59.235 52.381 0.00 0.00 0.00 4.79
5057 5582 1.486310 TGAATACTAGCACTGCCCCTG 59.514 52.381 0.00 0.00 0.00 4.45
5058 5583 1.486726 GAATACTAGCACTGCCCCTGT 59.513 52.381 0.00 0.00 0.00 4.00
5059 5584 2.471815 ATACTAGCACTGCCCCTGTA 57.528 50.000 0.00 0.00 0.00 2.74
5060 5585 1.776662 TACTAGCACTGCCCCTGTAG 58.223 55.000 0.00 0.00 0.00 2.74
5061 5586 0.252284 ACTAGCACTGCCCCTGTAGT 60.252 55.000 0.00 0.00 38.01 2.73
5062 5587 0.905357 CTAGCACTGCCCCTGTAGTT 59.095 55.000 0.00 0.00 34.98 2.24
5063 5588 1.279271 CTAGCACTGCCCCTGTAGTTT 59.721 52.381 0.00 0.00 34.98 2.66
5064 5589 1.358152 AGCACTGCCCCTGTAGTTTA 58.642 50.000 0.00 0.00 34.98 2.01
5065 5590 1.916181 AGCACTGCCCCTGTAGTTTAT 59.084 47.619 0.00 0.00 34.98 1.40
5066 5591 2.092914 AGCACTGCCCCTGTAGTTTATC 60.093 50.000 0.00 0.00 34.98 1.75
5067 5592 2.355716 GCACTGCCCCTGTAGTTTATCA 60.356 50.000 0.00 0.00 34.98 2.15
5068 5593 3.270877 CACTGCCCCTGTAGTTTATCAC 58.729 50.000 0.00 0.00 34.98 3.06
5111 5636 1.555075 AGCATCTACCGCTGAAAAGGA 59.445 47.619 0.00 0.00 38.60 3.36
5112 5637 1.666189 GCATCTACCGCTGAAAAGGAC 59.334 52.381 0.00 0.00 0.00 3.85
5113 5638 2.678190 GCATCTACCGCTGAAAAGGACT 60.678 50.000 0.00 0.00 0.00 3.85
5114 5639 3.430374 GCATCTACCGCTGAAAAGGACTA 60.430 47.826 0.00 0.00 0.00 2.59
5117 5642 2.745515 ACCGCTGAAAAGGACTACTC 57.254 50.000 0.00 0.00 0.00 2.59
5130 5655 7.803279 AAAGGACTACTCTGTTTTTACCTTG 57.197 36.000 0.00 0.00 35.76 3.61
5132 5657 6.896883 AGGACTACTCTGTTTTTACCTTGTT 58.103 36.000 0.00 0.00 0.00 2.83
5180 5705 2.954318 GTCCTACCAGTAGTATTGCCGA 59.046 50.000 4.23 0.00 0.00 5.54
5187 5712 4.250464 CCAGTAGTATTGCCGAAGTGAAA 58.750 43.478 0.00 0.00 0.00 2.69
5188 5713 4.876107 CCAGTAGTATTGCCGAAGTGAAAT 59.124 41.667 0.00 0.00 0.00 2.17
5195 5720 8.281212 AGTATTGCCGAAGTGAAATTTATCTT 57.719 30.769 6.94 6.94 0.00 2.40
5197 5722 4.732784 TGCCGAAGTGAAATTTATCTTGC 58.267 39.130 10.68 9.58 0.00 4.01
5246 5771 2.315176 TCACCACCAAAAACCATGGAG 58.685 47.619 21.47 2.34 40.56 3.86
5280 5805 1.472188 GGTACGCTAGGGTTCTCACT 58.528 55.000 18.45 0.00 0.00 3.41
5281 5806 1.823610 GGTACGCTAGGGTTCTCACTT 59.176 52.381 18.45 0.00 0.00 3.16
5282 5807 2.159268 GGTACGCTAGGGTTCTCACTTC 60.159 54.545 18.45 0.00 0.00 3.01
5289 5814 0.666577 GGGTTCTCACTTCGTCACCG 60.667 60.000 0.00 0.00 0.00 4.94
5312 5837 5.576447 AAAGTGTCGAAGTTCACCAATTT 57.424 34.783 3.32 7.40 35.18 1.82
5344 5869 8.977505 GTCAAAATATCTCACTCTAAGATCAGC 58.022 37.037 0.00 0.00 35.20 4.26
5345 5870 8.699130 TCAAAATATCTCACTCTAAGATCAGCA 58.301 33.333 0.00 0.00 35.20 4.41
5346 5871 9.491675 CAAAATATCTCACTCTAAGATCAGCAT 57.508 33.333 0.00 0.00 35.20 3.79
5348 5873 9.491675 AAATATCTCACTCTAAGATCAGCATTG 57.508 33.333 0.00 0.00 35.20 2.82
5349 5874 6.728089 ATCTCACTCTAAGATCAGCATTGA 57.272 37.500 0.00 0.00 37.81 2.57
5350 5875 5.900425 TCTCACTCTAAGATCAGCATTGAC 58.100 41.667 0.00 0.00 35.83 3.18
5351 5876 5.655974 TCTCACTCTAAGATCAGCATTGACT 59.344 40.000 0.00 0.00 35.83 3.41
5352 5877 6.154192 TCTCACTCTAAGATCAGCATTGACTT 59.846 38.462 0.00 0.00 35.83 3.01
5353 5878 6.336566 TCACTCTAAGATCAGCATTGACTTC 58.663 40.000 0.00 0.00 35.83 3.01
5354 5879 5.231779 CACTCTAAGATCAGCATTGACTTCG 59.768 44.000 0.00 0.00 35.83 3.79
5355 5880 4.686972 TCTAAGATCAGCATTGACTTCGG 58.313 43.478 0.00 0.00 35.83 4.30
5356 5881 3.616956 AAGATCAGCATTGACTTCGGA 57.383 42.857 0.00 0.00 35.83 4.55
5357 5882 3.616956 AGATCAGCATTGACTTCGGAA 57.383 42.857 0.00 0.00 35.83 4.30
5358 5883 3.265791 AGATCAGCATTGACTTCGGAAC 58.734 45.455 0.00 0.00 35.83 3.62
5359 5884 2.002586 ATCAGCATTGACTTCGGAACG 58.997 47.619 0.00 0.00 45.88 3.95
5360 5885 3.816537 ATCAGCATTGACTTCGGAACGC 61.817 50.000 0.00 0.00 44.66 4.84
5371 5896 3.876300 GGAACGCAGGCAGTAGTG 58.124 61.111 0.00 0.00 0.00 2.74
5372 5897 1.741770 GGAACGCAGGCAGTAGTGG 60.742 63.158 0.00 0.00 0.00 4.00
5373 5898 1.004918 GAACGCAGGCAGTAGTGGT 60.005 57.895 0.00 0.00 0.00 4.16
5374 5899 1.004918 AACGCAGGCAGTAGTGGTC 60.005 57.895 0.00 0.00 0.00 4.02
5375 5900 2.125512 CGCAGGCAGTAGTGGTCC 60.126 66.667 0.00 0.00 0.00 4.46
5376 5901 2.650116 CGCAGGCAGTAGTGGTCCT 61.650 63.158 0.00 0.00 0.00 3.85
5377 5902 1.219393 GCAGGCAGTAGTGGTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
5378 5903 1.513158 CAGGCAGTAGTGGTCCTCG 59.487 63.158 0.00 0.00 0.00 4.63
5379 5904 2.184579 GGCAGTAGTGGTCCTCGC 59.815 66.667 0.00 0.00 0.00 5.03
5380 5905 2.184579 GCAGTAGTGGTCCTCGCC 59.815 66.667 0.00 0.00 0.00 5.54
5381 5906 2.490217 CAGTAGTGGTCCTCGCCG 59.510 66.667 0.00 0.00 0.00 6.46
5382 5907 3.450115 AGTAGTGGTCCTCGCCGC 61.450 66.667 0.00 0.00 39.22 6.53
5383 5908 4.509737 GTAGTGGTCCTCGCCGCC 62.510 72.222 0.00 0.00 39.73 6.13
5399 5924 4.171103 CCGGAACATCGGGGGTCC 62.171 72.222 0.00 1.66 45.78 4.46
5425 5950 4.719369 GCGCCTGTCCTCGACGTT 62.719 66.667 0.00 0.00 34.95 3.99
5426 5951 2.504244 CGCCTGTCCTCGACGTTC 60.504 66.667 0.00 0.00 34.95 3.95
5427 5952 2.126031 GCCTGTCCTCGACGTTCC 60.126 66.667 0.00 0.00 34.95 3.62
5428 5953 2.178521 CCTGTCCTCGACGTTCCG 59.821 66.667 0.00 0.00 34.95 4.30
5429 5954 2.504244 CTGTCCTCGACGTTCCGC 60.504 66.667 0.00 0.00 34.95 5.54
5444 5969 3.414700 CGCGTCCAGTGGAAGTGC 61.415 66.667 22.90 20.24 35.29 4.40
5445 5970 2.031163 GCGTCCAGTGGAAGTGCT 59.969 61.111 23.67 0.00 35.41 4.40
5446 5971 2.029844 GCGTCCAGTGGAAGTGCTC 61.030 63.158 23.67 6.09 35.41 4.26
5447 5972 1.734477 CGTCCAGTGGAAGTGCTCG 60.734 63.158 15.09 8.41 35.41 5.03
5448 5973 1.666011 GTCCAGTGGAAGTGCTCGA 59.334 57.895 15.09 0.00 35.41 4.04
5449 5974 0.667792 GTCCAGTGGAAGTGCTCGAC 60.668 60.000 15.09 0.00 35.41 4.20
5450 5975 1.734477 CCAGTGGAAGTGCTCGACG 60.734 63.158 1.68 0.00 37.81 5.12
5451 5976 1.285950 CAGTGGAAGTGCTCGACGA 59.714 57.895 0.00 0.00 37.81 4.20
5452 5977 0.730834 CAGTGGAAGTGCTCGACGAG 60.731 60.000 20.56 20.56 37.81 4.18
5461 5986 4.838486 CTCGACGAGCGGCCACTC 62.838 72.222 12.67 10.95 41.33 3.51
5495 6020 4.285851 CGCCTCCAGTGGAAGTTC 57.714 61.111 14.17 1.70 0.00 3.01
5496 6021 1.376037 CGCCTCCAGTGGAAGTTCC 60.376 63.158 15.50 15.50 36.96 3.62
5497 6022 1.376037 GCCTCCAGTGGAAGTTCCG 60.376 63.158 14.17 2.87 40.17 4.30
5498 6023 2.058675 CCTCCAGTGGAAGTTCCGT 58.941 57.895 14.17 4.08 40.17 4.69
5499 6024 0.320771 CCTCCAGTGGAAGTTCCGTG 60.321 60.000 14.17 15.68 40.17 4.94
5500 6025 0.951040 CTCCAGTGGAAGTTCCGTGC 60.951 60.000 14.17 9.71 40.17 5.34
5501 6026 1.966451 CCAGTGGAAGTTCCGTGCC 60.966 63.158 17.13 5.16 40.17 5.01
5502 6027 1.966451 CAGTGGAAGTTCCGTGCCC 60.966 63.158 17.13 2.78 40.17 5.36
5503 6028 3.047877 GTGGAAGTTCCGTGCCCG 61.048 66.667 17.13 0.00 40.17 6.13
5504 6029 3.552384 TGGAAGTTCCGTGCCCGT 61.552 61.111 17.13 0.00 40.17 5.28
5505 6030 3.047877 GGAAGTTCCGTGCCCGTG 61.048 66.667 6.06 0.00 0.00 4.94
5506 6031 2.029964 GAAGTTCCGTGCCCGTGA 59.970 61.111 0.00 0.00 0.00 4.35
5507 6032 2.280592 AAGTTCCGTGCCCGTGAC 60.281 61.111 0.00 0.00 0.00 3.67
5508 6033 3.819877 AAGTTCCGTGCCCGTGACC 62.820 63.158 0.00 0.00 0.00 4.02
5519 6044 3.968568 CGTGACCGGTGACCGTGA 61.969 66.667 23.73 2.80 46.80 4.35
5520 6045 2.654877 GTGACCGGTGACCGTGAT 59.345 61.111 23.73 7.89 46.80 3.06
5521 6046 1.736645 GTGACCGGTGACCGTGATG 60.737 63.158 23.73 9.92 46.80 3.07
5522 6047 2.813908 GACCGGTGACCGTGATGC 60.814 66.667 23.73 3.25 46.80 3.91
5523 6048 4.735132 ACCGGTGACCGTGATGCG 62.735 66.667 23.73 8.74 46.80 4.73
5555 6080 4.383861 CAGCCAGCGTCCAGAGCA 62.384 66.667 0.00 0.00 37.01 4.26
5556 6081 4.079850 AGCCAGCGTCCAGAGCAG 62.080 66.667 0.00 0.00 37.01 4.24
5558 6083 4.383861 CCAGCGTCCAGAGCAGCA 62.384 66.667 0.00 0.00 37.01 4.41
5559 6084 2.814341 CAGCGTCCAGAGCAGCAG 60.814 66.667 0.00 0.00 37.01 4.24
5560 6085 4.756458 AGCGTCCAGAGCAGCAGC 62.756 66.667 0.00 0.00 42.56 5.25
5594 6119 4.436998 GTCAGGACGCCACTCCCG 62.437 72.222 0.00 0.00 0.00 5.14
5601 6126 3.900892 CGCCACTCCCGCGTCTAT 61.901 66.667 4.92 0.00 44.55 1.98
5602 6127 2.549198 CGCCACTCCCGCGTCTATA 61.549 63.158 4.92 0.00 44.55 1.31
5603 6128 1.737816 GCCACTCCCGCGTCTATAA 59.262 57.895 4.92 0.00 0.00 0.98
5604 6129 0.317479 GCCACTCCCGCGTCTATAAT 59.683 55.000 4.92 0.00 0.00 1.28
5605 6130 1.542915 GCCACTCCCGCGTCTATAATA 59.457 52.381 4.92 0.00 0.00 0.98
5606 6131 2.165845 GCCACTCCCGCGTCTATAATAT 59.834 50.000 4.92 0.00 0.00 1.28
5607 6132 3.734293 GCCACTCCCGCGTCTATAATATC 60.734 52.174 4.92 0.00 0.00 1.63
5608 6133 3.442625 CCACTCCCGCGTCTATAATATCA 59.557 47.826 4.92 0.00 0.00 2.15
5609 6134 4.438880 CCACTCCCGCGTCTATAATATCAG 60.439 50.000 4.92 0.00 0.00 2.90
5610 6135 4.395231 CACTCCCGCGTCTATAATATCAGA 59.605 45.833 4.92 0.00 0.00 3.27
5611 6136 4.395542 ACTCCCGCGTCTATAATATCAGAC 59.604 45.833 4.92 0.00 38.24 3.51
5612 6137 4.329392 TCCCGCGTCTATAATATCAGACA 58.671 43.478 4.92 0.00 41.04 3.41
5613 6138 4.155462 TCCCGCGTCTATAATATCAGACAC 59.845 45.833 4.92 2.99 41.04 3.67
5614 6139 4.082949 CCCGCGTCTATAATATCAGACACA 60.083 45.833 4.92 0.00 41.04 3.72
5615 6140 4.852104 CCGCGTCTATAATATCAGACACAC 59.148 45.833 4.92 2.17 41.04 3.82
5616 6141 5.449304 CGCGTCTATAATATCAGACACACA 58.551 41.667 0.00 0.00 41.04 3.72
5617 6142 6.086871 CGCGTCTATAATATCAGACACACAT 58.913 40.000 0.00 0.00 41.04 3.21
5618 6143 7.241376 CGCGTCTATAATATCAGACACACATA 58.759 38.462 0.00 0.00 41.04 2.29
5619 6144 7.216505 CGCGTCTATAATATCAGACACACATAC 59.783 40.741 0.00 0.00 41.04 2.39
5620 6145 8.237949 GCGTCTATAATATCAGACACACATACT 58.762 37.037 10.82 0.00 41.04 2.12
5628 6153 6.974932 ATCAGACACACATACTTGACAATC 57.025 37.500 0.00 0.00 0.00 2.67
5629 6154 5.852827 TCAGACACACATACTTGACAATCA 58.147 37.500 0.00 0.00 0.00 2.57
5630 6155 6.466812 TCAGACACACATACTTGACAATCAT 58.533 36.000 0.00 0.00 0.00 2.45
5631 6156 6.936335 TCAGACACACATACTTGACAATCATT 59.064 34.615 0.00 0.00 0.00 2.57
5632 6157 7.445096 TCAGACACACATACTTGACAATCATTT 59.555 33.333 0.00 0.00 0.00 2.32
5633 6158 7.747799 CAGACACACATACTTGACAATCATTTC 59.252 37.037 0.00 0.00 0.00 2.17
5634 6159 7.445096 AGACACACATACTTGACAATCATTTCA 59.555 33.333 0.00 0.00 0.00 2.69
5635 6160 7.939782 ACACACATACTTGACAATCATTTCAA 58.060 30.769 0.00 0.00 0.00 2.69
5636 6161 8.412456 ACACACATACTTGACAATCATTTCAAA 58.588 29.630 0.00 0.00 31.41 2.69
5637 6162 9.414295 CACACATACTTGACAATCATTTCAAAT 57.586 29.630 0.00 0.00 31.41 2.32
5638 6163 9.630098 ACACATACTTGACAATCATTTCAAATC 57.370 29.630 0.00 0.00 31.41 2.17
5639 6164 9.079833 CACATACTTGACAATCATTTCAAATCC 57.920 33.333 0.00 0.00 31.41 3.01
5640 6165 8.253113 ACATACTTGACAATCATTTCAAATCCC 58.747 33.333 0.00 0.00 31.41 3.85
5641 6166 6.041423 ACTTGACAATCATTTCAAATCCCC 57.959 37.500 0.00 0.00 31.41 4.81
5642 6167 5.543405 ACTTGACAATCATTTCAAATCCCCA 59.457 36.000 0.00 0.00 31.41 4.96
5643 6168 6.043012 ACTTGACAATCATTTCAAATCCCCAA 59.957 34.615 0.00 0.00 31.41 4.12
5644 6169 6.430962 TGACAATCATTTCAAATCCCCAAA 57.569 33.333 0.00 0.00 0.00 3.28
5645 6170 7.018487 TGACAATCATTTCAAATCCCCAAAT 57.982 32.000 0.00 0.00 0.00 2.32
5646 6171 7.460071 TGACAATCATTTCAAATCCCCAAATT 58.540 30.769 0.00 0.00 0.00 1.82
5647 6172 8.600668 TGACAATCATTTCAAATCCCCAAATTA 58.399 29.630 0.00 0.00 0.00 1.40
5648 6173 9.617523 GACAATCATTTCAAATCCCCAAATTAT 57.382 29.630 0.00 0.00 0.00 1.28
5649 6174 9.398538 ACAATCATTTCAAATCCCCAAATTATG 57.601 29.630 0.00 0.00 0.00 1.90
5650 6175 9.616156 CAATCATTTCAAATCCCCAAATTATGA 57.384 29.630 0.00 0.00 0.00 2.15
5697 6222 8.600449 TCAAATTCAAACATAACAAATGGTCC 57.400 30.769 0.00 0.00 0.00 4.46
5698 6223 8.206867 TCAAATTCAAACATAACAAATGGTCCA 58.793 29.630 0.00 0.00 0.00 4.02
5699 6224 8.834465 CAAATTCAAACATAACAAATGGTCCAA 58.166 29.630 0.00 0.00 0.00 3.53
5700 6225 8.970859 AATTCAAACATAACAAATGGTCCAAA 57.029 26.923 0.00 0.00 0.00 3.28
5701 6226 9.571816 AATTCAAACATAACAAATGGTCCAAAT 57.428 25.926 0.00 0.00 0.00 2.32
5702 6227 8.970859 TTCAAACATAACAAATGGTCCAAATT 57.029 26.923 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.508153 GGGCTTTTGAGAGAGAAGGAAAAAC 60.508 44.000 0.00 0.00 0.00 2.43
4 5 3.138283 TGGGCTTTTGAGAGAGAAGGAAA 59.862 43.478 0.00 0.00 0.00 3.13
5 6 2.711009 TGGGCTTTTGAGAGAGAAGGAA 59.289 45.455 0.00 0.00 0.00 3.36
6 7 2.304180 CTGGGCTTTTGAGAGAGAAGGA 59.696 50.000 0.00 0.00 0.00 3.36
7 8 2.039613 ACTGGGCTTTTGAGAGAGAAGG 59.960 50.000 0.00 0.00 0.00 3.46
8 9 3.415457 ACTGGGCTTTTGAGAGAGAAG 57.585 47.619 0.00 0.00 0.00 2.85
9 10 3.864789 AACTGGGCTTTTGAGAGAGAA 57.135 42.857 0.00 0.00 0.00 2.87
10 11 3.864789 AAACTGGGCTTTTGAGAGAGA 57.135 42.857 0.00 0.00 0.00 3.10
64 65 4.214758 CACATGACAGACACACAACATCAT 59.785 41.667 0.00 0.00 0.00 2.45
71 72 2.977772 TGACACATGACAGACACACA 57.022 45.000 0.00 0.00 0.00 3.72
96 97 7.814587 CAATCGTTAGATGCAGATCTAATGGTA 59.185 37.037 21.17 9.75 45.21 3.25
104 105 4.447054 CCTCACAATCGTTAGATGCAGATC 59.553 45.833 0.00 0.00 37.14 2.75
126 127 4.379339 TTGCAAAAGGTCACAACTTACC 57.621 40.909 0.00 0.00 35.91 2.85
137 138 9.639601 GAAAAGTAAGCTATTATTGCAAAAGGT 57.360 29.630 1.71 1.71 0.00 3.50
148 149 8.807948 AATTGGAGCAGAAAAGTAAGCTATTA 57.192 30.769 0.00 0.00 37.48 0.98
155 156 5.528043 TGCAAATTGGAGCAGAAAAGTAA 57.472 34.783 0.00 0.00 35.51 2.24
186 187 8.237267 GGATGTTGTTGGTTTCAAGATACTAAG 58.763 37.037 0.00 0.00 32.92 2.18
206 207 2.044793 TGAAGTGAGGGAGGGATGTT 57.955 50.000 0.00 0.00 0.00 2.71
222 223 2.789213 TCATCGGGCTGTTTTGATGAA 58.211 42.857 1.55 0.00 42.95 2.57
291 292 8.603242 ACTTGAAAGAAGACGCTCTAAATTTA 57.397 30.769 0.00 0.00 0.00 1.40
295 296 6.315393 ACAAACTTGAAAGAAGACGCTCTAAA 59.685 34.615 0.00 0.00 0.00 1.85
296 297 5.815740 ACAAACTTGAAAGAAGACGCTCTAA 59.184 36.000 0.00 0.00 0.00 2.10
299 300 4.034048 TCACAAACTTGAAAGAAGACGCTC 59.966 41.667 0.00 0.00 0.00 5.03
302 303 5.627172 TGTTCACAAACTTGAAAGAAGACG 58.373 37.500 0.00 0.00 37.24 4.18
455 456 4.313020 AAATCACCATCTTCCTTCTGCT 57.687 40.909 0.00 0.00 0.00 4.24
493 494 6.647895 GGACCGAGTGAGTAAGAAATTAAACA 59.352 38.462 0.00 0.00 0.00 2.83
510 511 1.897802 ACAAGTAATTCCGGACCGAGT 59.102 47.619 17.49 0.00 0.00 4.18
513 514 1.274596 CGACAAGTAATTCCGGACCG 58.725 55.000 1.83 6.99 0.00 4.79
514 515 1.205417 TCCGACAAGTAATTCCGGACC 59.795 52.381 1.83 0.00 43.47 4.46
591 592 1.335324 CCGTCCGAAACTACTTGTCGT 60.335 52.381 0.00 0.00 32.93 4.34
601 603 0.538584 AATACTCCCCCGTCCGAAAC 59.461 55.000 0.00 0.00 0.00 2.78
637 639 5.451381 GCATACAATAAAACCAGCCCTAACC 60.451 44.000 0.00 0.00 0.00 2.85
640 642 4.211920 GGCATACAATAAAACCAGCCCTA 58.788 43.478 0.00 0.00 34.94 3.53
692 694 5.856455 CGCTCCGTTATTTTCTTTCACAAAT 59.144 36.000 0.00 0.00 0.00 2.32
707 709 0.817013 ACCGGTATTTCGCTCCGTTA 59.183 50.000 4.49 0.00 42.30 3.18
709 711 1.153706 CACCGGTATTTCGCTCCGT 60.154 57.895 6.87 0.00 42.30 4.69
712 714 1.152383 GAGCCACCGGTATTTCGCTC 61.152 60.000 6.87 14.74 36.33 5.03
836 838 9.319143 CCACACCATTTTTGTAGATTTTAAACA 57.681 29.630 0.00 0.00 0.00 2.83
838 840 8.207545 AGCCACACCATTTTTGTAGATTTTAAA 58.792 29.630 0.00 0.00 0.00 1.52
841 843 6.041979 AGAGCCACACCATTTTTGTAGATTTT 59.958 34.615 0.00 0.00 0.00 1.82
845 847 4.098914 AGAGCCACACCATTTTTGTAGA 57.901 40.909 0.00 0.00 0.00 2.59
846 848 4.549458 CAAGAGCCACACCATTTTTGTAG 58.451 43.478 0.00 0.00 0.00 2.74
859 871 5.835113 TTAATATCAAAGCCAAGAGCCAC 57.165 39.130 0.00 0.00 45.47 5.01
868 880 6.406961 CCAAAGGGAGGTTTAATATCAAAGCC 60.407 42.308 0.00 0.00 36.74 4.35
905 918 0.522180 GGAAGTCGAAGTGAGCGAGA 59.478 55.000 0.00 0.00 38.59 4.04
1296 1341 4.821589 CGGAGCTCCAGCCGGTTC 62.822 72.222 31.67 2.06 43.67 3.62
1342 1387 3.141488 CTCCAGCGCCTCGTACCT 61.141 66.667 2.29 0.00 0.00 3.08
1546 1592 1.595058 GGAGGAGAAGGGGAGAGGGA 61.595 65.000 0.00 0.00 0.00 4.20
1550 1596 1.018840 TCATGGAGGAGAAGGGGAGA 58.981 55.000 0.00 0.00 0.00 3.71
1679 1725 1.065551 GCCGCATACAGAAAATGTCCC 59.934 52.381 0.00 0.00 42.70 4.46
1684 1730 4.183101 CCATTTTGCCGCATACAGAAAAT 58.817 39.130 0.00 0.00 0.00 1.82
1688 1734 1.102154 CCCATTTTGCCGCATACAGA 58.898 50.000 0.00 0.00 0.00 3.41
1781 1827 6.183360 GCTACCGACAAAACGTACTAGTACTA 60.183 42.308 26.36 1.89 34.04 1.82
1869 1915 2.474410 CCTCAAGGTCCCAACTGTAC 57.526 55.000 0.00 0.00 0.00 2.90
1881 1927 0.606401 AATGACACGGCACCTCAAGG 60.606 55.000 0.00 0.00 42.17 3.61
1892 1938 5.723492 TGAGATAGCATCAAAATGACACG 57.277 39.130 0.00 0.00 34.61 4.49
1940 1998 6.755542 ACAATTACCATTTTTCCCCAAGAA 57.244 33.333 0.00 0.00 0.00 2.52
1941 1999 6.327626 TGAACAATTACCATTTTTCCCCAAGA 59.672 34.615 0.00 0.00 30.74 3.02
1942 2000 6.529220 TGAACAATTACCATTTTTCCCCAAG 58.471 36.000 0.00 0.00 30.74 3.61
1943 2001 6.500589 TGAACAATTACCATTTTTCCCCAA 57.499 33.333 0.00 0.00 30.74 4.12
1944 2002 6.694445 ATGAACAATTACCATTTTTCCCCA 57.306 33.333 0.00 0.00 30.74 4.96
1945 2003 6.128035 GCAATGAACAATTACCATTTTTCCCC 60.128 38.462 0.00 0.00 30.74 4.81
1946 2004 6.654582 AGCAATGAACAATTACCATTTTTCCC 59.345 34.615 0.00 0.00 30.74 3.97
1947 2005 7.387397 TGAGCAATGAACAATTACCATTTTTCC 59.613 33.333 0.00 0.00 30.74 3.13
1948 2006 8.309163 TGAGCAATGAACAATTACCATTTTTC 57.691 30.769 0.00 0.00 31.95 2.29
1949 2007 8.674263 TTGAGCAATGAACAATTACCATTTTT 57.326 26.923 0.00 0.00 0.00 1.94
1950 2008 8.674263 TTTGAGCAATGAACAATTACCATTTT 57.326 26.923 0.00 0.00 0.00 1.82
1951 2009 8.149647 TCTTTGAGCAATGAACAATTACCATTT 58.850 29.630 0.00 0.00 0.00 2.32
1952 2010 7.669427 TCTTTGAGCAATGAACAATTACCATT 58.331 30.769 0.00 0.00 0.00 3.16
1953 2011 7.230849 TCTTTGAGCAATGAACAATTACCAT 57.769 32.000 0.00 0.00 0.00 3.55
1954 2012 6.647334 TCTTTGAGCAATGAACAATTACCA 57.353 33.333 0.00 0.00 0.00 3.25
1980 2038 4.273480 GCATGTACCATATTGACACCACTC 59.727 45.833 0.00 0.00 0.00 3.51
1990 2048 6.970165 ATAAGTAGGGGCATGTACCATATT 57.030 37.500 10.18 2.53 0.00 1.28
2075 2136 9.910511 CTTTGTATTGTATATGTACCAAACGTC 57.089 33.333 0.00 0.00 0.00 4.34
2076 2137 8.885722 CCTTTGTATTGTATATGTACCAAACGT 58.114 33.333 0.00 0.00 0.00 3.99
2131 2192 5.530915 GTGGTGCACATGCTTTCCTATTATA 59.469 40.000 20.43 0.00 42.66 0.98
2133 2194 3.694072 GTGGTGCACATGCTTTCCTATTA 59.306 43.478 20.43 0.00 42.66 0.98
2191 2259 9.731819 TGAGAAAACAGACGATATAATACTGTC 57.268 33.333 0.00 0.00 40.23 3.51
2342 2411 4.499037 AAAGGGCGTTCACTATCAAAAC 57.501 40.909 0.00 0.00 0.00 2.43
2367 2436 3.885297 CCATGGATTGATGACTGGTTACC 59.115 47.826 5.56 0.00 0.00 2.85
2395 2464 9.234827 CCTCCATCTAAACATTTATATCATGCA 57.765 33.333 0.00 0.00 0.00 3.96
2461 2532 3.664025 GTGTTTCAAATGCTCGCAAGTAC 59.336 43.478 0.00 0.00 39.48 2.73
2521 2593 0.323178 CCCAGCCTCTGCATCAAAGT 60.323 55.000 0.00 0.00 41.13 2.66
2525 2597 2.838436 TACCCCCAGCCTCTGCATCA 62.838 60.000 0.00 0.00 41.13 3.07
2639 2711 9.472361 GCATAAACGGTCTAATCTGATAAGTAA 57.528 33.333 0.00 0.00 0.00 2.24
2640 2712 7.806487 CGCATAAACGGTCTAATCTGATAAGTA 59.194 37.037 0.00 0.00 0.00 2.24
2641 2713 6.641314 CGCATAAACGGTCTAATCTGATAAGT 59.359 38.462 0.00 0.00 0.00 2.24
2642 2714 6.641314 ACGCATAAACGGTCTAATCTGATAAG 59.359 38.462 0.00 0.00 37.37 1.73
2643 2715 6.509656 ACGCATAAACGGTCTAATCTGATAA 58.490 36.000 0.00 0.00 37.37 1.75
2681 2753 0.821517 TCGACACAGCCATACGGATT 59.178 50.000 0.00 0.00 0.00 3.01
2683 2755 0.678684 TCTCGACACAGCCATACGGA 60.679 55.000 0.00 0.00 0.00 4.69
2688 2760 3.822607 GAAGTCTCGACACAGCCAT 57.177 52.632 0.00 0.00 0.00 4.40
2698 2770 9.769093 AAAAATACATAAAAATCCGAAGTCTCG 57.231 29.630 0.00 0.00 45.02 4.04
2726 2798 7.228308 GCTAAGAAGGAAAAGCATATCATCACT 59.772 37.037 0.00 0.00 35.05 3.41
2727 2799 7.228308 AGCTAAGAAGGAAAAGCATATCATCAC 59.772 37.037 0.00 0.00 37.44 3.06
2778 2850 4.507710 TCTGCAGCGAAGTCAGAATTATT 58.492 39.130 9.47 0.00 34.30 1.40
2813 2885 5.035443 ACGAGAGTTAGCATCAAACGATAC 58.965 41.667 0.00 0.00 46.40 2.24
2834 2906 3.302555 TGTTACAAGTAGCAAGTCGACG 58.697 45.455 10.46 0.00 0.00 5.12
2869 2941 7.591057 TCGCTTCTCAAAAACATGAAACAATAG 59.409 33.333 0.00 0.00 0.00 1.73
2894 2966 4.102681 AGGGCATAACATGGGTTAGTACTC 59.897 45.833 0.00 0.00 42.42 2.59
3040 3112 1.063190 TGACCGGACTACCATCTCCAT 60.063 52.381 9.46 0.00 35.59 3.41
3450 3522 9.428097 GCTTTTCTTCCATCAAATGTAAAATCT 57.572 29.630 0.00 0.00 0.00 2.40
3510 3582 9.189156 CCTTCTTCAGTATTCCCAAAATAATCA 57.811 33.333 0.00 0.00 0.00 2.57
3619 3691 1.891150 ACCAGCCAATGCAAGAGAAAG 59.109 47.619 0.00 0.00 41.13 2.62
3728 3825 3.586470 ACACCACCAACTGTAAATCCA 57.414 42.857 0.00 0.00 0.00 3.41
3731 3828 4.081420 TGCAAAACACCACCAACTGTAAAT 60.081 37.500 0.00 0.00 0.00 1.40
3769 3875 1.476085 CATTGCTAATTGCCCGTGGAA 59.524 47.619 0.00 0.00 42.00 3.53
3774 3880 2.652941 AACACATTGCTAATTGCCCG 57.347 45.000 0.00 0.00 42.00 6.13
4199 4348 4.900635 TTCTTTCTTTCTTGAGCACACC 57.099 40.909 0.00 0.00 0.00 4.16
4226 4375 9.090103 CCTTATCTACACCAGTAATCCTATTGA 57.910 37.037 0.00 0.00 0.00 2.57
4227 4376 8.871125 ACCTTATCTACACCAGTAATCCTATTG 58.129 37.037 0.00 0.00 0.00 1.90
4228 4377 9.448587 AACCTTATCTACACCAGTAATCCTATT 57.551 33.333 0.00 0.00 0.00 1.73
4231 4380 6.901300 TCAACCTTATCTACACCAGTAATCCT 59.099 38.462 0.00 0.00 0.00 3.24
4232 4381 7.120923 TCAACCTTATCTACACCAGTAATCC 57.879 40.000 0.00 0.00 0.00 3.01
4272 4421 6.307776 TCTTCAGTTCTTAACAGGAGAGAGA 58.692 40.000 0.00 0.00 28.63 3.10
4276 4425 5.833667 TCACTCTTCAGTTCTTAACAGGAGA 59.166 40.000 0.00 0.00 32.34 3.71
4321 4773 6.183360 GCAATTCGACCACCAATTAACATTTC 60.183 38.462 0.00 0.00 0.00 2.17
4327 4779 6.375736 TCATTAGCAATTCGACCACCAATTAA 59.624 34.615 0.00 0.00 0.00 1.40
4332 4784 3.342377 TCATTAGCAATTCGACCACCA 57.658 42.857 0.00 0.00 0.00 4.17
4339 4791 5.175673 TGCGAGAGTAATCATTAGCAATTCG 59.824 40.000 0.00 0.00 0.00 3.34
4376 4828 7.812690 AAATGTCATCTTATAGCTGAATGCA 57.187 32.000 0.00 0.00 45.94 3.96
4396 4882 8.345565 GTCCAGATACATAAGCTTGGTAAAATG 58.654 37.037 9.86 6.15 0.00 2.32
4408 4896 8.147058 AGATTGCAGTTAGTCCAGATACATAAG 58.853 37.037 0.00 0.00 0.00 1.73
4475 4963 0.311790 CCAGCACATTTGAACAGCGT 59.688 50.000 0.00 0.00 0.00 5.07
4796 5319 5.774498 ATCTGACGATGATGCTACACTAA 57.226 39.130 0.00 0.00 0.00 2.24
4886 5411 7.359262 TCAACAAATTACTGTATGGAGAACG 57.641 36.000 0.00 0.00 0.00 3.95
4890 5415 7.864108 TCCATCAACAAATTACTGTATGGAG 57.136 36.000 9.36 0.00 38.59 3.86
4902 5427 5.537674 GGATCCATAAGCTCCATCAACAAAT 59.462 40.000 6.95 0.00 0.00 2.32
4917 5442 4.020218 GGCTGCTACTACATGGATCCATAA 60.020 45.833 26.87 16.51 34.91 1.90
4918 5443 3.515502 GGCTGCTACTACATGGATCCATA 59.484 47.826 26.87 11.89 34.91 2.74
4940 5465 2.089980 CATCAAAGTCAGAGGCCAAGG 58.910 52.381 5.01 0.00 0.00 3.61
4947 5472 5.485620 TCTCACCAATCATCAAAGTCAGAG 58.514 41.667 0.00 0.00 0.00 3.35
4960 5485 5.734720 TCTACCATCTGTTTCTCACCAATC 58.265 41.667 0.00 0.00 0.00 2.67
4992 5517 6.715347 AAGCAGAAACTACCATCTGTTTTT 57.285 33.333 4.87 0.00 42.18 1.94
4993 5518 6.715347 AAAGCAGAAACTACCATCTGTTTT 57.285 33.333 10.50 10.50 45.90 2.43
4994 5519 5.507985 GCAAAGCAGAAACTACCATCTGTTT 60.508 40.000 4.87 2.40 45.29 2.83
4995 5520 4.022849 GCAAAGCAGAAACTACCATCTGTT 60.023 41.667 4.87 0.00 43.91 3.16
4996 5521 3.503748 GCAAAGCAGAAACTACCATCTGT 59.496 43.478 4.87 0.00 43.91 3.41
4997 5522 3.755378 AGCAAAGCAGAAACTACCATCTG 59.245 43.478 0.00 0.00 44.66 2.90
4998 5523 4.026356 AGCAAAGCAGAAACTACCATCT 57.974 40.909 0.00 0.00 0.00 2.90
4999 5524 4.216257 TCAAGCAAAGCAGAAACTACCATC 59.784 41.667 0.00 0.00 0.00 3.51
5000 5525 4.144297 TCAAGCAAAGCAGAAACTACCAT 58.856 39.130 0.00 0.00 0.00 3.55
5001 5526 3.550820 TCAAGCAAAGCAGAAACTACCA 58.449 40.909 0.00 0.00 0.00 3.25
5002 5527 4.773323 ATCAAGCAAAGCAGAAACTACC 57.227 40.909 0.00 0.00 0.00 3.18
5003 5528 5.762045 TCAATCAAGCAAAGCAGAAACTAC 58.238 37.500 0.00 0.00 0.00 2.73
5004 5529 6.432162 AGATCAATCAAGCAAAGCAGAAACTA 59.568 34.615 0.00 0.00 0.00 2.24
5005 5530 4.924305 TCAATCAAGCAAAGCAGAAACT 57.076 36.364 0.00 0.00 0.00 2.66
5006 5531 5.345202 CAGATCAATCAAGCAAAGCAGAAAC 59.655 40.000 0.00 0.00 0.00 2.78
5019 5544 7.052248 AGTATTCAGTCATGCAGATCAATCAA 58.948 34.615 0.00 0.00 0.00 2.57
5026 5551 5.070180 AGTGCTAGTATTCAGTCATGCAGAT 59.930 40.000 0.00 0.00 0.00 2.90
5032 5557 3.181461 GGGCAGTGCTAGTATTCAGTCAT 60.181 47.826 16.11 0.00 0.00 3.06
5049 5574 3.535561 CAGTGATAAACTACAGGGGCAG 58.464 50.000 0.00 0.00 36.83 4.85
5050 5575 2.355716 GCAGTGATAAACTACAGGGGCA 60.356 50.000 0.00 0.00 36.83 5.36
5051 5576 2.289565 GCAGTGATAAACTACAGGGGC 58.710 52.381 0.00 0.00 36.83 5.80
5052 5577 2.421529 GGGCAGTGATAAACTACAGGGG 60.422 54.545 0.00 0.00 36.83 4.79
5053 5578 2.421529 GGGGCAGTGATAAACTACAGGG 60.422 54.545 0.00 0.00 36.83 4.45
5054 5579 2.505819 AGGGGCAGTGATAAACTACAGG 59.494 50.000 0.00 0.00 36.83 4.00
5055 5580 3.055094 ACAGGGGCAGTGATAAACTACAG 60.055 47.826 0.00 0.00 36.83 2.74
5056 5581 2.910319 ACAGGGGCAGTGATAAACTACA 59.090 45.455 0.00 0.00 36.83 2.74
5057 5582 3.629142 ACAGGGGCAGTGATAAACTAC 57.371 47.619 0.00 0.00 36.83 2.73
5058 5583 4.359105 ACTACAGGGGCAGTGATAAACTA 58.641 43.478 0.00 0.00 36.83 2.24
5059 5584 3.182152 ACTACAGGGGCAGTGATAAACT 58.818 45.455 0.00 0.00 40.93 2.66
5060 5585 3.629142 ACTACAGGGGCAGTGATAAAC 57.371 47.619 0.00 0.00 0.00 2.01
5061 5586 4.650972 AAACTACAGGGGCAGTGATAAA 57.349 40.909 0.00 0.00 0.00 1.40
5062 5587 5.665812 AGATAAACTACAGGGGCAGTGATAA 59.334 40.000 0.00 0.00 0.00 1.75
5063 5588 5.216622 AGATAAACTACAGGGGCAGTGATA 58.783 41.667 0.00 0.00 0.00 2.15
5064 5589 4.040755 AGATAAACTACAGGGGCAGTGAT 58.959 43.478 0.00 0.00 0.00 3.06
5065 5590 3.450904 AGATAAACTACAGGGGCAGTGA 58.549 45.455 0.00 0.00 0.00 3.41
5066 5591 3.452627 AGAGATAAACTACAGGGGCAGTG 59.547 47.826 0.00 0.00 0.00 3.66
5067 5592 3.452627 CAGAGATAAACTACAGGGGCAGT 59.547 47.826 0.00 0.00 0.00 4.40
5068 5593 3.706594 TCAGAGATAAACTACAGGGGCAG 59.293 47.826 0.00 0.00 0.00 4.85
5111 5636 8.262933 ACTGTAACAAGGTAAAAACAGAGTAGT 58.737 33.333 7.24 0.00 38.14 2.73
5112 5637 8.658499 ACTGTAACAAGGTAAAAACAGAGTAG 57.342 34.615 7.24 0.00 38.14 2.57
5113 5638 7.436080 CGACTGTAACAAGGTAAAAACAGAGTA 59.564 37.037 7.24 0.00 38.14 2.59
5114 5639 6.257193 CGACTGTAACAAGGTAAAAACAGAGT 59.743 38.462 7.24 0.00 38.14 3.24
5117 5642 5.202640 GCGACTGTAACAAGGTAAAAACAG 58.797 41.667 0.00 0.00 40.08 3.16
5130 5655 2.584791 CAGCAAAATGGCGACTGTAAC 58.415 47.619 0.00 0.00 39.27 2.50
5132 5657 0.521291 GCAGCAAAATGGCGACTGTA 59.479 50.000 0.00 0.00 39.27 2.74
5180 5705 6.716628 TCAGTCCAGCAAGATAAATTTCACTT 59.283 34.615 0.00 0.00 0.00 3.16
5187 5712 6.116126 GGTAGTTCAGTCCAGCAAGATAAAT 58.884 40.000 0.00 0.00 0.00 1.40
5188 5713 5.488341 GGTAGTTCAGTCCAGCAAGATAAA 58.512 41.667 0.00 0.00 0.00 1.40
5195 5720 0.888619 CTCGGTAGTTCAGTCCAGCA 59.111 55.000 0.00 0.00 0.00 4.41
5197 5722 0.173708 GCCTCGGTAGTTCAGTCCAG 59.826 60.000 0.00 0.00 0.00 3.86
5246 5771 4.114794 AGCGTACCGTGGATGTAATTTAC 58.885 43.478 0.00 0.00 0.00 2.01
5289 5814 4.813296 ATTGGTGAACTTCGACACTTTC 57.187 40.909 4.18 0.00 37.22 2.62
5340 5865 1.428448 CGTTCCGAAGTCAATGCTGA 58.572 50.000 0.00 0.00 0.00 4.26
5341 5866 0.179215 GCGTTCCGAAGTCAATGCTG 60.179 55.000 0.00 0.00 32.65 4.41
5342 5867 0.602638 TGCGTTCCGAAGTCAATGCT 60.603 50.000 0.00 0.00 35.82 3.79
5343 5868 0.179215 CTGCGTTCCGAAGTCAATGC 60.179 55.000 0.00 0.00 35.44 3.56
5344 5869 0.443869 CCTGCGTTCCGAAGTCAATG 59.556 55.000 0.00 0.00 29.03 2.82
5345 5870 1.298859 GCCTGCGTTCCGAAGTCAAT 61.299 55.000 0.00 0.00 29.03 2.57
5346 5871 1.959226 GCCTGCGTTCCGAAGTCAA 60.959 57.895 0.00 0.00 29.03 3.18
5347 5872 2.357034 GCCTGCGTTCCGAAGTCA 60.357 61.111 0.00 0.00 29.03 3.41
5348 5873 2.357034 TGCCTGCGTTCCGAAGTC 60.357 61.111 0.00 0.00 29.03 3.01
5349 5874 1.812686 TACTGCCTGCGTTCCGAAGT 61.813 55.000 0.00 0.00 29.03 3.01
5350 5875 1.078759 CTACTGCCTGCGTTCCGAAG 61.079 60.000 0.00 0.00 31.28 3.79
5351 5876 1.080093 CTACTGCCTGCGTTCCGAA 60.080 57.895 0.00 0.00 0.00 4.30
5352 5877 2.273179 ACTACTGCCTGCGTTCCGA 61.273 57.895 0.00 0.00 0.00 4.55
5353 5878 2.094659 CACTACTGCCTGCGTTCCG 61.095 63.158 0.00 0.00 0.00 4.30
5354 5879 1.741770 CCACTACTGCCTGCGTTCC 60.742 63.158 0.00 0.00 0.00 3.62
5355 5880 1.004918 ACCACTACTGCCTGCGTTC 60.005 57.895 0.00 0.00 0.00 3.95
5356 5881 1.004918 GACCACTACTGCCTGCGTT 60.005 57.895 0.00 0.00 0.00 4.84
5357 5882 2.657237 GACCACTACTGCCTGCGT 59.343 61.111 0.00 0.00 0.00 5.24
5358 5883 2.125512 GGACCACTACTGCCTGCG 60.126 66.667 0.00 0.00 0.00 5.18
5359 5884 1.219393 GAGGACCACTACTGCCTGC 59.781 63.158 0.00 0.00 0.00 4.85
5360 5885 1.513158 CGAGGACCACTACTGCCTG 59.487 63.158 0.00 0.00 0.00 4.85
5361 5886 2.352032 GCGAGGACCACTACTGCCT 61.352 63.158 0.00 0.00 0.00 4.75
5362 5887 2.184579 GCGAGGACCACTACTGCC 59.815 66.667 0.00 0.00 0.00 4.85
5363 5888 2.184579 GGCGAGGACCACTACTGC 59.815 66.667 0.00 0.00 0.00 4.40
5364 5889 2.490217 CGGCGAGGACCACTACTG 59.510 66.667 0.00 0.00 0.00 2.74
5365 5890 3.450115 GCGGCGAGGACCACTACT 61.450 66.667 12.98 0.00 0.00 2.57
5366 5891 4.509737 GGCGGCGAGGACCACTAC 62.510 72.222 12.98 0.00 0.00 2.73
5408 5933 4.719369 AACGTCGAGGACAGGCGC 62.719 66.667 12.85 0.00 32.09 6.53
5409 5934 2.504244 GAACGTCGAGGACAGGCG 60.504 66.667 12.85 0.00 32.09 5.52
5410 5935 2.126031 GGAACGTCGAGGACAGGC 60.126 66.667 12.85 0.00 32.09 4.85
5423 5948 2.027625 CTTCCACTGGACGCGGAAC 61.028 63.158 12.47 0.00 35.05 3.62
5424 5949 2.342279 CTTCCACTGGACGCGGAA 59.658 61.111 12.47 0.79 37.28 4.30
5425 5950 2.915659 ACTTCCACTGGACGCGGA 60.916 61.111 12.47 0.00 0.00 5.54
5426 5951 2.738521 CACTTCCACTGGACGCGG 60.739 66.667 12.47 0.00 0.00 6.46
5427 5952 3.414700 GCACTTCCACTGGACGCG 61.415 66.667 3.53 3.53 0.00 6.01
5428 5953 2.029844 GAGCACTTCCACTGGACGC 61.030 63.158 0.00 1.25 0.00 5.19
5429 5954 1.734477 CGAGCACTTCCACTGGACG 60.734 63.158 0.00 0.00 0.00 4.79
5430 5955 0.667792 GTCGAGCACTTCCACTGGAC 60.668 60.000 0.00 0.00 35.06 4.02
5431 5956 1.666011 GTCGAGCACTTCCACTGGA 59.334 57.895 0.00 0.00 0.00 3.86
5432 5957 1.734477 CGTCGAGCACTTCCACTGG 60.734 63.158 0.00 0.00 0.00 4.00
5433 5958 0.730834 CTCGTCGAGCACTTCCACTG 60.731 60.000 9.74 0.00 0.00 3.66
5434 5959 1.581954 CTCGTCGAGCACTTCCACT 59.418 57.895 9.74 0.00 0.00 4.00
5435 5960 4.154613 CTCGTCGAGCACTTCCAC 57.845 61.111 9.74 0.00 0.00 4.02
5444 5969 4.838486 GAGTGGCCGCTCGTCGAG 62.838 72.222 29.54 18.08 41.67 4.04
5475 6000 4.785453 CTTCCACTGGAGGCGGCC 62.785 72.222 12.11 12.11 31.21 6.13
5476 6001 3.553095 AACTTCCACTGGAGGCGGC 62.553 63.158 7.11 0.00 31.55 6.53
5477 6002 1.376037 GAACTTCCACTGGAGGCGG 60.376 63.158 7.11 0.00 31.55 6.13
5478 6003 1.376037 GGAACTTCCACTGGAGGCG 60.376 63.158 7.11 0.00 36.28 5.52
5479 6004 1.376037 CGGAACTTCCACTGGAGGC 60.376 63.158 7.11 0.00 35.91 4.70
5480 6005 0.320771 CACGGAACTTCCACTGGAGG 60.321 60.000 8.59 5.64 35.91 4.30
5481 6006 0.951040 GCACGGAACTTCCACTGGAG 60.951 60.000 8.59 0.00 35.91 3.86
5482 6007 1.070786 GCACGGAACTTCCACTGGA 59.929 57.895 8.59 0.00 35.91 3.86
5483 6008 1.966451 GGCACGGAACTTCCACTGG 60.966 63.158 8.59 0.00 35.91 4.00
5484 6009 1.966451 GGGCACGGAACTTCCACTG 60.966 63.158 8.59 3.76 35.91 3.66
5485 6010 2.430367 GGGCACGGAACTTCCACT 59.570 61.111 8.59 0.00 35.91 4.00
5486 6011 3.047877 CGGGCACGGAACTTCCAC 61.048 66.667 0.00 0.00 35.91 4.02
5487 6012 3.552384 ACGGGCACGGAACTTCCA 61.552 61.111 15.46 0.00 46.48 3.53
5488 6013 3.047877 CACGGGCACGGAACTTCC 61.048 66.667 15.46 0.00 46.48 3.46
5489 6014 2.029964 TCACGGGCACGGAACTTC 59.970 61.111 15.46 0.00 46.48 3.01
5490 6015 2.280592 GTCACGGGCACGGAACTT 60.281 61.111 15.46 0.00 46.48 2.66
5491 6016 4.309950 GGTCACGGGCACGGAACT 62.310 66.667 15.46 0.00 46.48 3.01
5538 6063 4.383861 TGCTCTGGACGCTGGCTG 62.384 66.667 0.00 0.00 0.00 4.85
5539 6064 4.079850 CTGCTCTGGACGCTGGCT 62.080 66.667 0.00 0.00 0.00 4.75
5541 6066 4.383861 TGCTGCTCTGGACGCTGG 62.384 66.667 0.00 0.00 0.00 4.85
5542 6067 2.814341 CTGCTGCTCTGGACGCTG 60.814 66.667 0.00 0.00 0.00 5.18
5543 6068 4.756458 GCTGCTGCTCTGGACGCT 62.756 66.667 8.53 0.00 36.03 5.07
5545 6070 4.426112 TCGCTGCTGCTCTGGACG 62.426 66.667 14.03 0.00 36.97 4.79
5546 6071 2.508887 CTCGCTGCTGCTCTGGAC 60.509 66.667 14.03 0.00 36.97 4.02
5547 6072 2.677875 TCTCGCTGCTGCTCTGGA 60.678 61.111 14.03 2.58 36.97 3.86
5548 6073 2.202770 CTCTCGCTGCTGCTCTGG 60.203 66.667 14.03 0.00 36.97 3.86
5549 6074 2.202770 CCTCTCGCTGCTGCTCTG 60.203 66.667 14.03 3.81 36.97 3.35
5550 6075 3.459965 CCCTCTCGCTGCTGCTCT 61.460 66.667 14.03 0.00 36.97 4.09
5577 6102 4.436998 CGGGAGTGGCGTCCTGAC 62.437 72.222 8.53 0.00 44.92 3.51
5586 6111 3.442625 TGATATTATAGACGCGGGAGTGG 59.557 47.826 12.47 0.00 46.68 4.00
5587 6112 8.003046 TGTCTGATATTATAGACGCGGGAGTG 62.003 46.154 12.47 0.00 44.81 3.51
5588 6113 4.395542 GTCTGATATTATAGACGCGGGAGT 59.604 45.833 12.47 0.00 34.60 3.85
5589 6114 4.395231 TGTCTGATATTATAGACGCGGGAG 59.605 45.833 12.47 0.00 44.81 4.30
5590 6115 4.155462 GTGTCTGATATTATAGACGCGGGA 59.845 45.833 12.47 0.00 44.81 5.14
5591 6116 4.413087 GTGTCTGATATTATAGACGCGGG 58.587 47.826 12.47 0.00 44.81 6.13
5602 6127 9.102757 GATTGTCAAGTATGTGTGTCTGATATT 57.897 33.333 0.00 0.00 0.00 1.28
5603 6128 8.260114 TGATTGTCAAGTATGTGTGTCTGATAT 58.740 33.333 0.00 0.00 0.00 1.63
5604 6129 7.610865 TGATTGTCAAGTATGTGTGTCTGATA 58.389 34.615 0.00 0.00 0.00 2.15
5605 6130 6.466812 TGATTGTCAAGTATGTGTGTCTGAT 58.533 36.000 0.00 0.00 0.00 2.90
5606 6131 5.852827 TGATTGTCAAGTATGTGTGTCTGA 58.147 37.500 0.00 0.00 0.00 3.27
5607 6132 6.732531 ATGATTGTCAAGTATGTGTGTCTG 57.267 37.500 0.00 0.00 0.00 3.51
5608 6133 7.445096 TGAAATGATTGTCAAGTATGTGTGTCT 59.555 33.333 0.00 0.00 0.00 3.41
5609 6134 7.584108 TGAAATGATTGTCAAGTATGTGTGTC 58.416 34.615 0.00 0.00 0.00 3.67
5610 6135 7.509141 TGAAATGATTGTCAAGTATGTGTGT 57.491 32.000 0.00 0.00 0.00 3.72
5611 6136 8.800231 TTTGAAATGATTGTCAAGTATGTGTG 57.200 30.769 0.00 0.00 35.29 3.82
5612 6137 9.630098 GATTTGAAATGATTGTCAAGTATGTGT 57.370 29.630 0.00 0.00 35.29 3.72
5613 6138 9.079833 GGATTTGAAATGATTGTCAAGTATGTG 57.920 33.333 0.00 0.00 35.29 3.21
5614 6139 8.253113 GGGATTTGAAATGATTGTCAAGTATGT 58.747 33.333 0.00 0.00 35.29 2.29
5615 6140 7.707893 GGGGATTTGAAATGATTGTCAAGTATG 59.292 37.037 0.00 0.00 35.29 2.39
5616 6141 7.399765 TGGGGATTTGAAATGATTGTCAAGTAT 59.600 33.333 0.00 0.00 35.29 2.12
5617 6142 6.723515 TGGGGATTTGAAATGATTGTCAAGTA 59.276 34.615 0.00 0.00 35.29 2.24
5618 6143 5.543405 TGGGGATTTGAAATGATTGTCAAGT 59.457 36.000 0.00 2.29 35.29 3.16
5619 6144 6.040209 TGGGGATTTGAAATGATTGTCAAG 57.960 37.500 0.00 0.00 35.29 3.02
5620 6145 6.430962 TTGGGGATTTGAAATGATTGTCAA 57.569 33.333 0.00 0.00 31.99 3.18
5621 6146 6.430962 TTTGGGGATTTGAAATGATTGTCA 57.569 33.333 0.00 0.00 0.00 3.58
5622 6147 7.926674 AATTTGGGGATTTGAAATGATTGTC 57.073 32.000 0.00 0.00 0.00 3.18
5623 6148 9.398538 CATAATTTGGGGATTTGAAATGATTGT 57.601 29.630 0.00 0.00 0.00 2.71
5624 6149 9.616156 TCATAATTTGGGGATTTGAAATGATTG 57.384 29.630 0.00 0.00 0.00 2.67
5671 6196 9.050601 GGACCATTTGTTATGTTTGAATTTGAA 57.949 29.630 0.00 0.00 0.00 2.69
5672 6197 8.206867 TGGACCATTTGTTATGTTTGAATTTGA 58.793 29.630 0.00 0.00 0.00 2.69
5673 6198 8.375608 TGGACCATTTGTTATGTTTGAATTTG 57.624 30.769 0.00 0.00 0.00 2.32
5674 6199 8.970859 TTGGACCATTTGTTATGTTTGAATTT 57.029 26.923 0.00 0.00 0.00 1.82
5675 6200 8.970859 TTTGGACCATTTGTTATGTTTGAATT 57.029 26.923 0.00 0.00 0.00 2.17
5676 6201 9.571816 AATTTGGACCATTTGTTATGTTTGAAT 57.428 25.926 0.00 0.00 0.00 2.57
5677 6202 8.970859 AATTTGGACCATTTGTTATGTTTGAA 57.029 26.923 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.