Multiple sequence alignment - TraesCS3B01G122900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G122900 chr3B 100.000 4279 0 0 1 4279 94494280 94490002 0.000000e+00 7902.0
1 TraesCS3B01G122900 chr3B 95.092 3790 119 34 536 4279 93894080 93890312 0.000000e+00 5906.0
2 TraesCS3B01G122900 chr3B 90.369 1329 64 30 2119 3422 93361967 93360678 0.000000e+00 1687.0
3 TraesCS3B01G122900 chr3B 90.506 1106 51 24 2335 3422 93461389 93460320 0.000000e+00 1411.0
4 TraesCS3B01G122900 chr3B 93.619 862 40 7 3418 4279 93460291 93459445 0.000000e+00 1273.0
5 TraesCS3B01G122900 chr3B 93.163 863 41 9 3418 4279 93360649 93359804 0.000000e+00 1251.0
6 TraesCS3B01G122900 chr3B 86.121 843 43 25 1991 2780 94447589 94446768 0.000000e+00 841.0
7 TraesCS3B01G122900 chr3B 92.077 568 30 9 3712 4279 93320487 93319935 0.000000e+00 785.0
8 TraesCS3B01G122900 chr3B 91.549 568 31 6 3712 4279 93419875 93419325 0.000000e+00 767.0
9 TraesCS3B01G122900 chr3B 96.954 197 6 0 1933 2129 93362626 93362430 8.870000e-87 331.0
10 TraesCS3B01G122900 chr3B 96.954 197 6 0 1933 2129 93472084 93471888 8.870000e-87 331.0
11 TraesCS3B01G122900 chr3B 88.596 228 14 9 2119 2338 93471425 93471202 2.540000e-67 267.0
12 TraesCS3B01G122900 chr3B 95.890 73 2 1 416 488 93894154 93894083 2.700000e-22 117.0
13 TraesCS3B01G122900 chr3B 75.510 294 42 13 1 269 161130104 161129816 2.700000e-22 117.0
14 TraesCS3B01G122900 chr3B 83.333 126 16 4 3568 3693 93878688 93878568 1.260000e-20 111.0
15 TraesCS3B01G122900 chr3B 96.875 64 2 0 1933 1996 94449142 94449079 1.630000e-19 108.0
16 TraesCS3B01G122900 chr3B 83.333 126 12 5 3568 3693 94472088 94471972 1.630000e-19 108.0
17 TraesCS3B01G122900 chr3A 90.734 3108 149 59 379 3422 67788490 67785458 0.000000e+00 4015.0
18 TraesCS3B01G122900 chr3A 88.359 902 61 18 3418 4279 67785429 67784532 0.000000e+00 1044.0
19 TraesCS3B01G122900 chr3A 91.479 622 29 16 2806 3422 67581406 67580804 0.000000e+00 833.0
20 TraesCS3B01G122900 chr3A 89.300 486 36 8 2332 2810 67581960 67581484 2.850000e-166 595.0
21 TraesCS3B01G122900 chr3A 82.124 386 36 12 3418 3787 67580775 67580407 2.500000e-77 300.0
22 TraesCS3B01G122900 chr3A 81.034 174 20 9 3525 3693 67528787 67528622 4.490000e-25 126.0
23 TraesCS3B01G122900 chr3A 79.888 179 26 8 904 1081 67764915 67764746 5.810000e-24 122.0
24 TraesCS3B01G122900 chr3A 77.255 255 29 12 31 267 454424594 454424351 5.810000e-24 122.0
25 TraesCS3B01G122900 chr3D 89.717 2159 103 52 1303 3422 58595166 58593088 0.000000e+00 2647.0
26 TraesCS3B01G122900 chr3D 90.615 895 44 11 3418 4279 58527367 58526480 0.000000e+00 1151.0
27 TraesCS3B01G122900 chr3D 89.091 880 50 20 414 1261 58596034 58595169 0.000000e+00 1051.0
28 TraesCS3B01G122900 chr3D 84.461 547 55 15 887 1428 58539759 58539238 2.950000e-141 512.0
29 TraesCS3B01G122900 chr3D 84.810 316 42 3 3965 4278 58575175 58574864 3.210000e-81 313.0
30 TraesCS3B01G122900 chr3D 91.813 171 12 2 3252 3422 58527564 58527396 1.990000e-58 237.0
31 TraesCS3B01G122900 chr3D 79.921 254 25 14 2 232 122546423 122546173 3.420000e-36 163.0
32 TraesCS3B01G122900 chr3D 83.851 161 7 9 3418 3559 58593059 58592899 7.460000e-28 135.0
33 TraesCS3B01G122900 chr3D 84.783 92 12 2 3206 3296 58562420 58562330 1.640000e-14 91.6
34 TraesCS3B01G122900 chr3D 94.000 50 3 0 1537 1586 58527642 58527593 4.590000e-10 76.8
35 TraesCS3B01G122900 chr1A 85.401 274 25 9 2 267 107469435 107469701 1.960000e-68 270.0
36 TraesCS3B01G122900 chr1A 84.000 100 14 2 168 266 15320881 15320783 1.270000e-15 95.3
37 TraesCS3B01G122900 chr2A 81.985 272 39 6 1 265 83994132 83993864 5.570000e-54 222.0
38 TraesCS3B01G122900 chr4B 79.152 283 37 14 1 266 661883205 661883482 4.400000e-40 176.0
39 TraesCS3B01G122900 chr7B 81.532 222 27 8 1 214 693170407 693170192 2.050000e-38 171.0
40 TraesCS3B01G122900 chr2D 78.388 273 43 7 2 265 625195390 625195655 3.420000e-36 163.0
41 TraesCS3B01G122900 chr2D 85.065 154 17 5 2 151 73847588 73847739 7.410000e-33 152.0
42 TraesCS3B01G122900 chr7A 77.606 259 47 9 2 256 579547614 579547363 3.450000e-31 147.0
43 TraesCS3B01G122900 chr5B 77.431 288 38 17 2 265 449199191 449198907 3.450000e-31 147.0
44 TraesCS3B01G122900 chr5B 91.935 62 4 1 1169 1229 415995378 415995317 7.620000e-13 86.1
45 TraesCS3B01G122900 chr1D 84.667 150 17 5 4 151 399342641 399342496 1.240000e-30 145.0
46 TraesCS3B01G122900 chr1D 83.333 114 17 2 153 265 239565443 239565555 2.100000e-18 104.0
47 TraesCS3B01G122900 chr6D 88.172 93 11 0 177 269 24452556 24452464 1.260000e-20 111.0
48 TraesCS3B01G122900 chr6D 85.149 101 14 1 165 265 339773285 339773384 7.570000e-18 102.0
49 TraesCS3B01G122900 chr6D 83.962 106 16 1 161 266 155261169 155261273 2.720000e-17 100.0
50 TraesCS3B01G122900 chr5D 88.506 87 8 2 174 260 313327704 313327788 2.100000e-18 104.0
51 TraesCS3B01G122900 chr5D 91.935 62 4 1 1169 1229 352932481 352932420 7.620000e-13 86.1
52 TraesCS3B01G122900 chr5A 93.103 58 3 1 1173 1229 546771364 546771307 2.740000e-12 84.2
53 TraesCS3B01G122900 chr5A 90.000 60 5 1 1171 1229 452934735 452934794 4.590000e-10 76.8
54 TraesCS3B01G122900 chr7D 91.228 57 5 0 1173 1229 259291276 259291332 1.280000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G122900 chr3B 94490002 94494280 4278 True 7902.000000 7902 100.000000 1 4279 1 chr3B.!!$R5 4278
1 TraesCS3B01G122900 chr3B 93890312 93894154 3842 True 3011.500000 5906 95.491000 416 4279 2 chr3B.!!$R10 3863
2 TraesCS3B01G122900 chr3B 93459445 93461389 1944 True 1342.000000 1411 92.062500 2335 4279 2 chr3B.!!$R8 1944
3 TraesCS3B01G122900 chr3B 93359804 93362626 2822 True 1089.666667 1687 93.495333 1933 4279 3 chr3B.!!$R7 2346
4 TraesCS3B01G122900 chr3B 93319935 93320487 552 True 785.000000 785 92.077000 3712 4279 1 chr3B.!!$R1 567
5 TraesCS3B01G122900 chr3B 93419325 93419875 550 True 767.000000 767 91.549000 3712 4279 1 chr3B.!!$R2 567
6 TraesCS3B01G122900 chr3B 94446768 94449142 2374 True 474.500000 841 91.498000 1933 2780 2 chr3B.!!$R11 847
7 TraesCS3B01G122900 chr3B 93471202 93472084 882 True 299.000000 331 92.775000 1933 2338 2 chr3B.!!$R9 405
8 TraesCS3B01G122900 chr3A 67784532 67788490 3958 True 2529.500000 4015 89.546500 379 4279 2 chr3A.!!$R5 3900
9 TraesCS3B01G122900 chr3A 67580407 67581960 1553 True 576.000000 833 87.634333 2332 3787 3 chr3A.!!$R4 1455
10 TraesCS3B01G122900 chr3D 58592899 58596034 3135 True 1277.666667 2647 87.553000 414 3559 3 chr3D.!!$R6 3145
11 TraesCS3B01G122900 chr3D 58539238 58539759 521 True 512.000000 512 84.461000 887 1428 1 chr3D.!!$R1 541
12 TraesCS3B01G122900 chr3D 58526480 58527642 1162 True 488.266667 1151 92.142667 1537 4279 3 chr3D.!!$R5 2742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.031515 TCCCGATATCCGCCCCATAT 60.032 55.0 0.0 0.00 36.84 1.78 F
219 220 0.036010 GATGGATATGAGGGGTGCCG 60.036 60.0 0.0 0.00 0.00 5.69 F
247 248 0.038618 GGGTGTTTGATGCCGGTTTC 60.039 55.0 1.9 0.37 0.00 2.78 F
335 336 0.101399 CGCTCGGTTGTAGATGCTCT 59.899 55.0 0.0 0.00 0.00 4.09 F
2169 4235 0.171455 CTCAAGACCGTCCTTCCTCG 59.829 60.0 0.0 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2169 4235 0.177141 TATGTGTACCTTGGAGCCGC 59.823 55.000 0.00 0.00 0.00 6.53 R
2212 4296 3.122297 CTGCTGCTCTCGGAGAAATTAG 58.878 50.000 9.32 6.22 34.09 1.73 R
2236 4328 5.779922 TCATTAGCTAGTCAAAGAACGTGT 58.220 37.500 0.00 0.00 0.00 4.49 R
2325 4453 1.002544 CAGACCTTGGACTTGAGGGAC 59.997 57.143 0.00 0.00 37.36 4.46 R
3918 6304 2.745884 CAACGCCGCCATCTTGGA 60.746 61.111 0.00 0.00 40.96 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.314440 GATCCGCTGCCCGCCATA 62.314 66.667 0.00 0.00 35.03 2.74
19 20 3.612247 GATCCGCTGCCCGCCATAT 62.612 63.158 0.00 0.00 35.03 1.78
20 21 3.907260 ATCCGCTGCCCGCCATATG 62.907 63.158 0.00 0.00 35.03 1.78
27 28 3.625897 CCCGCCATATGCCGGAGA 61.626 66.667 25.70 0.00 40.41 3.71
28 29 2.425592 CCGCCATATGCCGGAGAA 59.574 61.111 20.01 0.00 36.23 2.87
29 30 1.669115 CCGCCATATGCCGGAGAAG 60.669 63.158 20.01 0.00 36.23 2.85
30 31 1.669115 CGCCATATGCCGGAGAAGG 60.669 63.158 5.05 0.00 36.24 3.46
40 41 2.731374 GGAGAAGGCCGGAGATCG 59.269 66.667 5.05 0.00 38.88 3.69
41 42 2.028337 GAGAAGGCCGGAGATCGC 59.972 66.667 5.05 0.00 37.59 4.58
42 43 3.507597 GAGAAGGCCGGAGATCGCC 62.508 68.421 5.05 5.23 37.59 5.54
51 52 3.524606 GAGATCGCCGGACGGGAA 61.525 66.667 5.05 0.00 43.89 3.97
52 53 3.486252 GAGATCGCCGGACGGGAAG 62.486 68.421 5.05 1.40 43.89 3.46
53 54 3.834799 GATCGCCGGACGGGAAGT 61.835 66.667 5.05 0.00 43.89 3.01
54 55 3.366739 GATCGCCGGACGGGAAGTT 62.367 63.158 5.05 0.00 43.89 2.66
55 56 3.659089 ATCGCCGGACGGGAAGTTG 62.659 63.158 5.05 0.00 43.89 3.16
58 59 3.633116 CCGGACGGGAAGTTGGGT 61.633 66.667 0.00 0.00 38.47 4.51
59 60 2.358247 CGGACGGGAAGTTGGGTG 60.358 66.667 0.00 0.00 0.00 4.61
60 61 2.033602 GGACGGGAAGTTGGGTGG 59.966 66.667 0.00 0.00 0.00 4.61
61 62 2.671963 GACGGGAAGTTGGGTGGC 60.672 66.667 0.00 0.00 0.00 5.01
62 63 4.636435 ACGGGAAGTTGGGTGGCG 62.636 66.667 0.00 0.00 0.00 5.69
64 65 3.961414 GGGAAGTTGGGTGGCGGA 61.961 66.667 0.00 0.00 0.00 5.54
65 66 2.359975 GGAAGTTGGGTGGCGGAG 60.360 66.667 0.00 0.00 0.00 4.63
66 67 2.430367 GAAGTTGGGTGGCGGAGT 59.570 61.111 0.00 0.00 0.00 3.85
67 68 1.966451 GAAGTTGGGTGGCGGAGTG 60.966 63.158 0.00 0.00 0.00 3.51
68 69 3.491598 AAGTTGGGTGGCGGAGTGG 62.492 63.158 0.00 0.00 0.00 4.00
69 70 3.948719 GTTGGGTGGCGGAGTGGA 61.949 66.667 0.00 0.00 0.00 4.02
70 71 3.636231 TTGGGTGGCGGAGTGGAG 61.636 66.667 0.00 0.00 0.00 3.86
71 72 4.954118 TGGGTGGCGGAGTGGAGT 62.954 66.667 0.00 0.00 0.00 3.85
72 73 4.394712 GGGTGGCGGAGTGGAGTG 62.395 72.222 0.00 0.00 0.00 3.51
73 74 4.394712 GGTGGCGGAGTGGAGTGG 62.395 72.222 0.00 0.00 0.00 4.00
74 75 3.311110 GTGGCGGAGTGGAGTGGA 61.311 66.667 0.00 0.00 0.00 4.02
75 76 2.997315 TGGCGGAGTGGAGTGGAG 60.997 66.667 0.00 0.00 0.00 3.86
76 77 2.680352 GGCGGAGTGGAGTGGAGA 60.680 66.667 0.00 0.00 0.00 3.71
77 78 2.716017 GGCGGAGTGGAGTGGAGAG 61.716 68.421 0.00 0.00 0.00 3.20
78 79 2.716017 GCGGAGTGGAGTGGAGAGG 61.716 68.421 0.00 0.00 0.00 3.69
79 80 1.000771 CGGAGTGGAGTGGAGAGGA 60.001 63.158 0.00 0.00 0.00 3.71
80 81 0.612174 CGGAGTGGAGTGGAGAGGAA 60.612 60.000 0.00 0.00 0.00 3.36
81 82 1.872773 GGAGTGGAGTGGAGAGGAAT 58.127 55.000 0.00 0.00 0.00 3.01
82 83 1.484240 GGAGTGGAGTGGAGAGGAATG 59.516 57.143 0.00 0.00 0.00 2.67
83 84 1.484240 GAGTGGAGTGGAGAGGAATGG 59.516 57.143 0.00 0.00 0.00 3.16
84 85 1.079490 AGTGGAGTGGAGAGGAATGGA 59.921 52.381 0.00 0.00 0.00 3.41
85 86 1.484240 GTGGAGTGGAGAGGAATGGAG 59.516 57.143 0.00 0.00 0.00 3.86
86 87 1.079490 TGGAGTGGAGAGGAATGGAGT 59.921 52.381 0.00 0.00 0.00 3.85
87 88 1.484240 GGAGTGGAGAGGAATGGAGTG 59.516 57.143 0.00 0.00 0.00 3.51
88 89 1.484240 GAGTGGAGAGGAATGGAGTGG 59.516 57.143 0.00 0.00 0.00 4.00
89 90 0.107459 GTGGAGAGGAATGGAGTGGC 60.107 60.000 0.00 0.00 0.00 5.01
90 91 0.252881 TGGAGAGGAATGGAGTGGCT 60.253 55.000 0.00 0.00 0.00 4.75
91 92 1.008327 TGGAGAGGAATGGAGTGGCTA 59.992 52.381 0.00 0.00 0.00 3.93
92 93 1.691434 GGAGAGGAATGGAGTGGCTAG 59.309 57.143 0.00 0.00 0.00 3.42
93 94 1.691434 GAGAGGAATGGAGTGGCTAGG 59.309 57.143 0.00 0.00 0.00 3.02
94 95 1.292242 AGAGGAATGGAGTGGCTAGGA 59.708 52.381 0.00 0.00 0.00 2.94
95 96 2.090267 AGAGGAATGGAGTGGCTAGGAT 60.090 50.000 0.00 0.00 0.00 3.24
96 97 2.708325 GAGGAATGGAGTGGCTAGGATT 59.292 50.000 0.00 0.00 0.00 3.01
97 98 3.126453 AGGAATGGAGTGGCTAGGATTT 58.874 45.455 0.00 0.00 0.00 2.17
98 99 3.117738 AGGAATGGAGTGGCTAGGATTTG 60.118 47.826 0.00 0.00 0.00 2.32
99 100 3.217626 GAATGGAGTGGCTAGGATTTGG 58.782 50.000 0.00 0.00 0.00 3.28
100 101 1.668826 TGGAGTGGCTAGGATTTGGT 58.331 50.000 0.00 0.00 0.00 3.67
101 102 1.559682 TGGAGTGGCTAGGATTTGGTC 59.440 52.381 0.00 0.00 0.00 4.02
109 110 4.542075 GGATTTGGTCCGAGGAGC 57.458 61.111 13.90 13.90 42.37 4.70
110 111 1.521681 GGATTTGGTCCGAGGAGCG 60.522 63.158 15.48 0.00 44.68 5.03
125 126 4.261888 GCGGATGCGGACGAATAT 57.738 55.556 9.20 0.00 0.00 1.28
126 127 3.411808 GCGGATGCGGACGAATATA 57.588 52.632 9.20 0.00 0.00 0.86
127 128 1.922570 GCGGATGCGGACGAATATAT 58.077 50.000 9.20 0.00 0.00 0.86
128 129 1.588404 GCGGATGCGGACGAATATATG 59.412 52.381 9.20 0.00 0.00 1.78
129 130 2.876091 CGGATGCGGACGAATATATGT 58.124 47.619 0.00 0.00 0.00 2.29
130 131 2.598637 CGGATGCGGACGAATATATGTG 59.401 50.000 0.00 0.00 0.00 3.21
131 132 2.930040 GGATGCGGACGAATATATGTGG 59.070 50.000 0.00 0.00 0.00 4.17
132 133 2.448926 TGCGGACGAATATATGTGGG 57.551 50.000 0.00 0.00 0.00 4.61
133 134 1.001520 TGCGGACGAATATATGTGGGG 59.998 52.381 0.00 0.00 0.00 4.96
134 135 1.001633 GCGGACGAATATATGTGGGGT 59.998 52.381 0.00 0.00 0.00 4.95
135 136 2.549349 GCGGACGAATATATGTGGGGTT 60.549 50.000 0.00 0.00 0.00 4.11
136 137 3.064207 CGGACGAATATATGTGGGGTTG 58.936 50.000 0.00 0.00 0.00 3.77
137 138 3.408634 GGACGAATATATGTGGGGTTGG 58.591 50.000 0.00 0.00 0.00 3.77
138 139 3.408634 GACGAATATATGTGGGGTTGGG 58.591 50.000 0.00 0.00 0.00 4.12
139 140 2.781174 ACGAATATATGTGGGGTTGGGT 59.219 45.455 0.00 0.00 0.00 4.51
140 141 3.146066 CGAATATATGTGGGGTTGGGTG 58.854 50.000 0.00 0.00 0.00 4.61
141 142 3.496331 GAATATATGTGGGGTTGGGTGG 58.504 50.000 0.00 0.00 0.00 4.61
142 143 1.227249 TATATGTGGGGTTGGGTGGG 58.773 55.000 0.00 0.00 0.00 4.61
143 144 2.236959 ATATGTGGGGTTGGGTGGGC 62.237 60.000 0.00 0.00 0.00 5.36
145 146 3.261677 GTGGGGTTGGGTGGGCTA 61.262 66.667 0.00 0.00 0.00 3.93
146 147 2.938798 TGGGGTTGGGTGGGCTAG 60.939 66.667 0.00 0.00 0.00 3.42
147 148 4.442454 GGGGTTGGGTGGGCTAGC 62.442 72.222 6.04 6.04 0.00 3.42
148 149 4.796495 GGGTTGGGTGGGCTAGCG 62.796 72.222 9.00 0.00 0.00 4.26
149 150 4.029809 GGTTGGGTGGGCTAGCGT 62.030 66.667 9.00 0.00 0.00 5.07
150 151 2.746277 GTTGGGTGGGCTAGCGTG 60.746 66.667 9.00 0.00 0.00 5.34
151 152 4.028490 TTGGGTGGGCTAGCGTGG 62.028 66.667 9.00 0.00 0.00 4.94
155 156 4.468689 GTGGGCTAGCGTGGGGAC 62.469 72.222 9.00 0.00 0.00 4.46
157 158 3.480133 GGGCTAGCGTGGGGACAT 61.480 66.667 9.00 0.00 46.14 3.06
158 159 2.138179 GGGCTAGCGTGGGGACATA 61.138 63.158 9.00 0.00 46.14 2.29
159 160 1.367840 GGCTAGCGTGGGGACATAG 59.632 63.158 9.00 0.00 46.14 2.23
160 161 1.301009 GCTAGCGTGGGGACATAGC 60.301 63.158 0.00 0.00 46.14 2.97
161 162 1.007271 CTAGCGTGGGGACATAGCG 60.007 63.158 0.00 0.00 46.81 4.26
162 163 2.421877 CTAGCGTGGGGACATAGCGG 62.422 65.000 0.00 0.00 46.81 5.52
163 164 2.914756 TAGCGTGGGGACATAGCGGA 62.915 60.000 0.00 0.00 46.81 5.54
164 165 2.106332 CGTGGGGACATAGCGGAC 59.894 66.667 0.00 0.00 46.14 4.79
165 166 2.106332 GTGGGGACATAGCGGACG 59.894 66.667 0.00 0.00 46.14 4.79
166 167 2.363276 TGGGGACATAGCGGACGT 60.363 61.111 0.00 0.00 33.40 4.34
167 168 2.106332 GGGGACATAGCGGACGTG 59.894 66.667 0.00 0.00 0.00 4.49
168 169 2.585247 GGGACATAGCGGACGTGC 60.585 66.667 0.00 0.00 0.00 5.34
169 170 2.585247 GGACATAGCGGACGTGCC 60.585 66.667 0.00 0.00 34.65 5.01
170 171 2.585247 GACATAGCGGACGTGCCC 60.585 66.667 0.00 0.00 34.65 5.36
188 189 4.083862 GGGCCTCCCGATATCCGC 62.084 72.222 0.84 0.00 36.84 5.54
189 190 4.083862 GGCCTCCCGATATCCGCC 62.084 72.222 0.00 0.00 36.84 6.13
190 191 4.083862 GCCTCCCGATATCCGCCC 62.084 72.222 0.00 0.00 36.84 6.13
191 192 3.391382 CCTCCCGATATCCGCCCC 61.391 72.222 0.00 0.00 36.84 5.80
192 193 2.603473 CTCCCGATATCCGCCCCA 60.603 66.667 0.00 0.00 36.84 4.96
193 194 1.990060 CTCCCGATATCCGCCCCAT 60.990 63.158 0.00 0.00 36.84 4.00
194 195 0.686441 CTCCCGATATCCGCCCCATA 60.686 60.000 0.00 0.00 36.84 2.74
195 196 0.031515 TCCCGATATCCGCCCCATAT 60.032 55.000 0.00 0.00 36.84 1.78
196 197 0.837272 CCCGATATCCGCCCCATATT 59.163 55.000 0.00 0.00 36.84 1.28
197 198 1.211949 CCCGATATCCGCCCCATATTT 59.788 52.381 0.00 0.00 36.84 1.40
198 199 2.288666 CCGATATCCGCCCCATATTTG 58.711 52.381 0.00 0.00 36.84 2.32
199 200 2.093181 CCGATATCCGCCCCATATTTGA 60.093 50.000 0.00 0.00 36.84 2.69
200 201 3.198068 CGATATCCGCCCCATATTTGAG 58.802 50.000 0.00 0.00 0.00 3.02
201 202 3.118775 CGATATCCGCCCCATATTTGAGA 60.119 47.826 0.00 0.00 0.00 3.27
202 203 4.443457 CGATATCCGCCCCATATTTGAGAT 60.443 45.833 0.00 0.00 0.00 2.75
203 204 2.566833 TCCGCCCCATATTTGAGATG 57.433 50.000 0.00 0.00 0.00 2.90
204 205 1.073763 TCCGCCCCATATTTGAGATGG 59.926 52.381 0.00 0.00 43.12 3.51
205 206 1.073763 CCGCCCCATATTTGAGATGGA 59.926 52.381 3.27 0.00 45.89 3.41
206 207 2.291153 CCGCCCCATATTTGAGATGGAT 60.291 50.000 3.27 0.00 45.89 3.41
207 208 3.054434 CCGCCCCATATTTGAGATGGATA 60.054 47.826 3.27 0.00 45.89 2.59
208 209 4.385643 CCGCCCCATATTTGAGATGGATAT 60.386 45.833 3.27 0.00 45.89 1.63
209 210 4.577693 CGCCCCATATTTGAGATGGATATG 59.422 45.833 3.27 0.00 45.89 1.78
210 211 5.629834 CGCCCCATATTTGAGATGGATATGA 60.630 44.000 3.27 0.00 45.89 2.15
211 212 5.826737 GCCCCATATTTGAGATGGATATGAG 59.173 44.000 3.27 0.00 45.89 2.90
212 213 6.363065 CCCCATATTTGAGATGGATATGAGG 58.637 44.000 3.27 0.00 45.89 3.86
213 214 6.363065 CCCATATTTGAGATGGATATGAGGG 58.637 44.000 3.27 0.00 45.89 4.30
214 215 6.363065 CCATATTTGAGATGGATATGAGGGG 58.637 44.000 0.00 0.00 45.89 4.79
215 216 6.069206 CCATATTTGAGATGGATATGAGGGGT 60.069 42.308 0.00 0.00 45.89 4.95
216 217 4.712051 TTTGAGATGGATATGAGGGGTG 57.288 45.455 0.00 0.00 0.00 4.61
217 218 1.980765 TGAGATGGATATGAGGGGTGC 59.019 52.381 0.00 0.00 0.00 5.01
218 219 1.280421 GAGATGGATATGAGGGGTGCC 59.720 57.143 0.00 0.00 0.00 5.01
219 220 0.036010 GATGGATATGAGGGGTGCCG 60.036 60.000 0.00 0.00 0.00 5.69
220 221 1.492133 ATGGATATGAGGGGTGCCGG 61.492 60.000 0.00 0.00 0.00 6.13
221 222 2.147387 GGATATGAGGGGTGCCGGT 61.147 63.158 1.90 0.00 0.00 5.28
222 223 1.371558 GATATGAGGGGTGCCGGTC 59.628 63.158 1.90 0.00 0.00 4.79
223 224 1.383943 ATATGAGGGGTGCCGGTCA 60.384 57.895 1.90 0.00 0.00 4.02
224 225 1.410850 ATATGAGGGGTGCCGGTCAG 61.411 60.000 1.90 0.00 0.00 3.51
234 235 4.003788 CCGGTCAGCTCGGGTGTT 62.004 66.667 4.45 0.00 43.45 3.32
235 236 2.030562 CGGTCAGCTCGGGTGTTT 59.969 61.111 0.00 0.00 32.43 2.83
236 237 2.317609 CGGTCAGCTCGGGTGTTTG 61.318 63.158 0.00 0.00 32.43 2.93
237 238 1.070786 GGTCAGCTCGGGTGTTTGA 59.929 57.895 0.00 0.00 32.43 2.69
238 239 0.321653 GGTCAGCTCGGGTGTTTGAT 60.322 55.000 0.00 0.00 32.43 2.57
239 240 0.798776 GTCAGCTCGGGTGTTTGATG 59.201 55.000 0.00 0.00 32.43 3.07
240 241 0.955428 TCAGCTCGGGTGTTTGATGC 60.955 55.000 0.00 0.00 32.43 3.91
241 242 1.675641 AGCTCGGGTGTTTGATGCC 60.676 57.895 0.00 0.00 0.00 4.40
242 243 3.039202 GCTCGGGTGTTTGATGCCG 62.039 63.158 0.00 0.00 0.00 5.69
243 244 2.359354 TCGGGTGTTTGATGCCGG 60.359 61.111 0.00 0.00 0.00 6.13
244 245 2.671619 CGGGTGTTTGATGCCGGT 60.672 61.111 1.90 0.00 0.00 5.28
245 246 2.265182 CGGGTGTTTGATGCCGGTT 61.265 57.895 1.90 0.00 0.00 4.44
246 247 1.801309 CGGGTGTTTGATGCCGGTTT 61.801 55.000 1.90 0.00 0.00 3.27
247 248 0.038618 GGGTGTTTGATGCCGGTTTC 60.039 55.000 1.90 0.37 0.00 2.78
248 249 0.671251 GGTGTTTGATGCCGGTTTCA 59.329 50.000 1.90 3.53 0.00 2.69
249 250 1.335872 GGTGTTTGATGCCGGTTTCAG 60.336 52.381 1.90 0.00 0.00 3.02
250 251 0.958091 TGTTTGATGCCGGTTTCAGG 59.042 50.000 1.90 0.00 0.00 3.86
258 259 3.508840 CGGTTTCAGGCGCCCATC 61.509 66.667 26.15 9.51 0.00 3.51
259 260 2.044946 GGTTTCAGGCGCCCATCT 60.045 61.111 26.15 0.00 0.00 2.90
260 261 2.409870 GGTTTCAGGCGCCCATCTG 61.410 63.158 26.15 15.69 0.00 2.90
261 262 2.045045 TTTCAGGCGCCCATCTGG 60.045 61.111 26.15 6.13 37.09 3.86
278 279 4.584688 GGTCGGAACCGGTTAGTG 57.415 61.111 22.33 13.11 40.25 2.74
279 280 1.966762 GGTCGGAACCGGTTAGTGA 59.033 57.895 22.33 15.35 40.25 3.41
280 281 0.533951 GGTCGGAACCGGTTAGTGAT 59.466 55.000 22.33 0.00 40.25 3.06
281 282 1.470458 GGTCGGAACCGGTTAGTGATC 60.470 57.143 22.33 14.65 40.25 2.92
282 283 0.452987 TCGGAACCGGTTAGTGATCG 59.547 55.000 22.33 16.27 40.25 3.69
284 285 0.808847 GGAACCGGTTAGTGATCGGC 60.809 60.000 22.33 3.87 46.87 5.54
285 286 0.108520 GAACCGGTTAGTGATCGGCA 60.109 55.000 22.33 0.00 46.87 5.69
286 287 0.539986 AACCGGTTAGTGATCGGCAT 59.460 50.000 20.78 0.00 46.87 4.40
287 288 0.104304 ACCGGTTAGTGATCGGCATC 59.896 55.000 6.50 0.00 46.87 3.91
288 289 0.389391 CCGGTTAGTGATCGGCATCT 59.611 55.000 0.00 0.00 37.25 2.90
289 290 1.202533 CCGGTTAGTGATCGGCATCTT 60.203 52.381 0.00 0.00 37.25 2.40
290 291 2.128035 CGGTTAGTGATCGGCATCTTC 58.872 52.381 0.00 0.00 0.00 2.87
291 292 2.484889 GGTTAGTGATCGGCATCTTCC 58.515 52.381 0.00 0.00 0.00 3.46
292 293 2.103263 GGTTAGTGATCGGCATCTTCCT 59.897 50.000 0.00 0.00 0.00 3.36
293 294 3.126831 GTTAGTGATCGGCATCTTCCTG 58.873 50.000 0.00 0.00 0.00 3.86
294 295 1.489481 AGTGATCGGCATCTTCCTGA 58.511 50.000 0.00 0.00 0.00 3.86
295 296 1.411977 AGTGATCGGCATCTTCCTGAG 59.588 52.381 0.00 0.00 0.00 3.35
296 297 0.105593 TGATCGGCATCTTCCTGAGC 59.894 55.000 0.00 0.00 0.00 4.26
297 298 0.105593 GATCGGCATCTTCCTGAGCA 59.894 55.000 0.00 0.00 0.00 4.26
298 299 0.763652 ATCGGCATCTTCCTGAGCAT 59.236 50.000 0.00 0.00 0.00 3.79
299 300 1.413118 TCGGCATCTTCCTGAGCATA 58.587 50.000 0.00 0.00 0.00 3.14
300 301 1.973515 TCGGCATCTTCCTGAGCATAT 59.026 47.619 0.00 0.00 0.00 1.78
301 302 2.074576 CGGCATCTTCCTGAGCATATG 58.925 52.381 0.00 0.00 0.00 1.78
302 303 2.289257 CGGCATCTTCCTGAGCATATGA 60.289 50.000 6.97 0.00 0.00 2.15
303 304 3.336468 GGCATCTTCCTGAGCATATGAG 58.664 50.000 6.97 0.00 0.00 2.90
304 305 3.336468 GCATCTTCCTGAGCATATGAGG 58.664 50.000 6.97 4.68 0.00 3.86
305 306 3.869140 GCATCTTCCTGAGCATATGAGGG 60.869 52.174 6.97 2.35 0.00 4.30
306 307 3.334910 TCTTCCTGAGCATATGAGGGA 57.665 47.619 6.97 4.74 0.00 4.20
307 308 3.237746 TCTTCCTGAGCATATGAGGGAG 58.762 50.000 6.97 8.82 34.11 4.30
308 309 2.021262 TCCTGAGCATATGAGGGAGG 57.979 55.000 6.97 5.61 0.00 4.30
309 310 1.221523 TCCTGAGCATATGAGGGAGGT 59.778 52.381 6.97 0.00 0.00 3.85
310 311 2.053244 CCTGAGCATATGAGGGAGGTT 58.947 52.381 6.97 0.00 0.00 3.50
311 312 2.441001 CCTGAGCATATGAGGGAGGTTT 59.559 50.000 6.97 0.00 0.00 3.27
312 313 3.648067 CCTGAGCATATGAGGGAGGTTTA 59.352 47.826 6.97 0.00 0.00 2.01
313 314 4.103153 CCTGAGCATATGAGGGAGGTTTAA 59.897 45.833 6.97 0.00 0.00 1.52
314 315 5.296151 TGAGCATATGAGGGAGGTTTAAG 57.704 43.478 6.97 0.00 0.00 1.85
315 316 4.103153 TGAGCATATGAGGGAGGTTTAAGG 59.897 45.833 6.97 0.00 0.00 2.69
316 317 3.149981 GCATATGAGGGAGGTTTAAGGC 58.850 50.000 6.97 0.00 0.00 4.35
317 318 3.403038 CATATGAGGGAGGTTTAAGGCG 58.597 50.000 0.00 0.00 0.00 5.52
318 319 0.107165 ATGAGGGAGGTTTAAGGCGC 60.107 55.000 0.00 0.00 0.00 6.53
319 320 1.198759 TGAGGGAGGTTTAAGGCGCT 61.199 55.000 7.64 0.00 0.00 5.92
320 321 0.462225 GAGGGAGGTTTAAGGCGCTC 60.462 60.000 7.64 0.00 34.05 5.03
321 322 1.814169 GGGAGGTTTAAGGCGCTCG 60.814 63.158 7.64 0.00 0.00 5.03
322 323 1.814169 GGAGGTTTAAGGCGCTCGG 60.814 63.158 7.64 0.00 0.00 4.63
323 324 1.079336 GAGGTTTAAGGCGCTCGGT 60.079 57.895 7.64 0.00 0.00 4.69
324 325 0.672711 GAGGTTTAAGGCGCTCGGTT 60.673 55.000 7.64 0.00 0.00 4.44
325 326 0.953960 AGGTTTAAGGCGCTCGGTTG 60.954 55.000 7.64 0.00 0.00 3.77
326 327 1.232621 GGTTTAAGGCGCTCGGTTGT 61.233 55.000 7.64 0.00 0.00 3.32
327 328 1.431496 GTTTAAGGCGCTCGGTTGTA 58.569 50.000 7.64 0.00 0.00 2.41
328 329 1.392510 GTTTAAGGCGCTCGGTTGTAG 59.607 52.381 7.64 0.00 0.00 2.74
329 330 0.889994 TTAAGGCGCTCGGTTGTAGA 59.110 50.000 7.64 0.00 0.00 2.59
330 331 1.108776 TAAGGCGCTCGGTTGTAGAT 58.891 50.000 7.64 0.00 0.00 1.98
331 332 0.460284 AAGGCGCTCGGTTGTAGATG 60.460 55.000 7.64 0.00 0.00 2.90
332 333 2.526120 GGCGCTCGGTTGTAGATGC 61.526 63.158 7.64 0.00 0.00 3.91
333 334 1.519455 GCGCTCGGTTGTAGATGCT 60.519 57.895 0.00 0.00 0.00 3.79
334 335 1.483424 GCGCTCGGTTGTAGATGCTC 61.483 60.000 0.00 0.00 0.00 4.26
335 336 0.101399 CGCTCGGTTGTAGATGCTCT 59.899 55.000 0.00 0.00 0.00 4.09
336 337 1.846541 GCTCGGTTGTAGATGCTCTC 58.153 55.000 0.00 0.00 0.00 3.20
337 338 1.135139 GCTCGGTTGTAGATGCTCTCA 59.865 52.381 0.00 0.00 0.00 3.27
338 339 2.803451 CTCGGTTGTAGATGCTCTCAC 58.197 52.381 0.00 0.00 0.00 3.51
339 340 2.164422 CTCGGTTGTAGATGCTCTCACA 59.836 50.000 0.00 0.00 0.00 3.58
340 341 2.760650 TCGGTTGTAGATGCTCTCACAT 59.239 45.455 0.00 0.00 0.00 3.21
341 342 2.862536 CGGTTGTAGATGCTCTCACATG 59.137 50.000 0.00 0.00 0.00 3.21
342 343 2.611292 GGTTGTAGATGCTCTCACATGC 59.389 50.000 0.00 0.00 0.00 4.06
343 344 3.264947 GTTGTAGATGCTCTCACATGCA 58.735 45.455 0.00 0.00 43.67 3.96
351 352 3.876341 TGCTCTCACATGCATACAATCA 58.124 40.909 0.00 0.00 33.94 2.57
352 353 4.457466 TGCTCTCACATGCATACAATCAT 58.543 39.130 0.00 0.00 33.94 2.45
353 354 4.514066 TGCTCTCACATGCATACAATCATC 59.486 41.667 0.00 0.00 33.94 2.92
354 355 4.755629 GCTCTCACATGCATACAATCATCT 59.244 41.667 0.00 0.00 0.00 2.90
355 356 5.238868 GCTCTCACATGCATACAATCATCTT 59.761 40.000 0.00 0.00 0.00 2.40
356 357 6.238676 GCTCTCACATGCATACAATCATCTTT 60.239 38.462 0.00 0.00 0.00 2.52
357 358 7.255491 TCTCACATGCATACAATCATCTTTC 57.745 36.000 0.00 0.00 0.00 2.62
358 359 6.261603 TCTCACATGCATACAATCATCTTTCC 59.738 38.462 0.00 0.00 0.00 3.13
359 360 5.300034 TCACATGCATACAATCATCTTTCCC 59.700 40.000 0.00 0.00 0.00 3.97
360 361 4.586001 ACATGCATACAATCATCTTTCCCC 59.414 41.667 0.00 0.00 0.00 4.81
361 362 4.524802 TGCATACAATCATCTTTCCCCT 57.475 40.909 0.00 0.00 0.00 4.79
362 363 4.464008 TGCATACAATCATCTTTCCCCTC 58.536 43.478 0.00 0.00 0.00 4.30
363 364 4.166725 TGCATACAATCATCTTTCCCCTCT 59.833 41.667 0.00 0.00 0.00 3.69
364 365 5.136105 GCATACAATCATCTTTCCCCTCTT 58.864 41.667 0.00 0.00 0.00 2.85
365 366 5.595952 GCATACAATCATCTTTCCCCTCTTT 59.404 40.000 0.00 0.00 0.00 2.52
366 367 6.097412 GCATACAATCATCTTTCCCCTCTTTT 59.903 38.462 0.00 0.00 0.00 2.27
367 368 7.682981 GCATACAATCATCTTTCCCCTCTTTTC 60.683 40.741 0.00 0.00 0.00 2.29
368 369 5.896963 ACAATCATCTTTCCCCTCTTTTCT 58.103 37.500 0.00 0.00 0.00 2.52
369 370 6.318112 ACAATCATCTTTCCCCTCTTTTCTT 58.682 36.000 0.00 0.00 0.00 2.52
370 371 6.435591 ACAATCATCTTTCCCCTCTTTTCTTC 59.564 38.462 0.00 0.00 0.00 2.87
371 372 4.923415 TCATCTTTCCCCTCTTTTCTTCC 58.077 43.478 0.00 0.00 0.00 3.46
372 373 4.353788 TCATCTTTCCCCTCTTTTCTTCCA 59.646 41.667 0.00 0.00 0.00 3.53
373 374 4.806952 TCTTTCCCCTCTTTTCTTCCAA 57.193 40.909 0.00 0.00 0.00 3.53
374 375 5.137412 TCTTTCCCCTCTTTTCTTCCAAA 57.863 39.130 0.00 0.00 0.00 3.28
375 376 5.140454 TCTTTCCCCTCTTTTCTTCCAAAG 58.860 41.667 0.00 0.00 35.39 2.77
376 377 4.806952 TTCCCCTCTTTTCTTCCAAAGA 57.193 40.909 0.00 0.00 39.91 2.52
377 378 4.100279 TCCCCTCTTTTCTTCCAAAGAC 57.900 45.455 0.00 0.00 37.77 3.01
404 405 6.515272 ACACAACCATGTTGAAATATCCTC 57.485 37.500 13.46 0.00 37.82 3.71
406 407 5.353956 CACAACCATGTTGAAATATCCTCGA 59.646 40.000 13.46 0.00 37.82 4.04
407 408 6.038603 CACAACCATGTTGAAATATCCTCGAT 59.961 38.462 13.46 0.00 37.82 3.59
493 498 6.507958 CCCAAAAGGTGTTCAAAATGTTTT 57.492 33.333 0.00 0.00 0.00 2.43
679 701 3.914312 AGTTCGTCGACATCATCAACTT 58.086 40.909 17.16 0.00 0.00 2.66
692 714 7.222872 ACATCATCAACTTCCCATAGATTCTC 58.777 38.462 0.00 0.00 0.00 2.87
693 715 5.847304 TCATCAACTTCCCATAGATTCTCG 58.153 41.667 0.00 0.00 0.00 4.04
694 716 5.598417 TCATCAACTTCCCATAGATTCTCGA 59.402 40.000 0.00 0.00 0.00 4.04
696 718 4.099573 TCAACTTCCCATAGATTCTCGACC 59.900 45.833 0.00 0.00 0.00 4.79
773 803 1.229984 CCCCTCTTCTCCCCCAAGT 60.230 63.158 0.00 0.00 0.00 3.16
926 970 0.539986 ATACGCACGGTCCCATTTCT 59.460 50.000 0.00 0.00 0.00 2.52
1103 1164 0.457035 GCCAGGTGTGTGCATTATGG 59.543 55.000 0.00 0.00 0.00 2.74
1123 1184 1.363080 GCCCTACCTCGATCGGTTC 59.637 63.158 16.41 0.00 38.49 3.62
1125 1186 1.461911 CCCTACCTCGATCGGTTCCC 61.462 65.000 16.41 0.00 38.49 3.97
1150 1211 0.673437 TCGCGCACAGATATCCATCA 59.327 50.000 8.75 0.00 33.21 3.07
1274 1341 6.039717 TCCTTTGATTAATTAGCATCACTGGC 59.960 38.462 0.24 0.00 0.00 4.85
1366 1439 3.007723 CACTGGGATATCTGTCTGATGGG 59.992 52.174 2.05 0.00 36.65 4.00
1532 1615 8.593492 TCAACTGTTTCTGATGATAATATCGG 57.407 34.615 0.00 0.00 35.26 4.18
1535 1618 7.726216 ACTGTTTCTGATGATAATATCGGACA 58.274 34.615 0.00 0.00 41.03 4.02
1577 1660 2.430610 ATGGAGGACGAGCCAGCTC 61.431 63.158 9.67 9.67 40.02 4.09
1586 1669 1.816537 GAGCCAGCTCCGTACATCA 59.183 57.895 8.51 0.00 37.11 3.07
1635 1733 2.202810 GCAGCAGTCCGTCCTAGC 60.203 66.667 0.00 0.00 0.00 3.42
1640 1738 1.139095 CAGTCCGTCCTAGCCGAAC 59.861 63.158 2.01 0.00 0.00 3.95
1657 1755 1.831736 GAACTCGATTTCCTCCCCTCA 59.168 52.381 4.23 0.00 0.00 3.86
1664 1762 0.696143 TTTCCTCCCCTCACACCACA 60.696 55.000 0.00 0.00 0.00 4.17
1681 1779 4.586235 ACCGGTGGCTGCAGCTTT 62.586 61.111 35.82 12.75 41.70 3.51
1690 1788 1.681666 CTGCAGCTTTCCCTCCTCA 59.318 57.895 0.00 0.00 0.00 3.86
1717 1815 1.136984 CTCCTCCTCGTTCCGTTCG 59.863 63.158 0.00 0.00 0.00 3.95
2169 4235 0.171455 CTCAAGACCGTCCTTCCTCG 59.829 60.000 0.00 0.00 0.00 4.63
2185 4251 2.813908 CGCGGCTCCAAGGTACAC 60.814 66.667 0.00 0.00 0.00 2.90
2186 4252 2.345991 GCGGCTCCAAGGTACACA 59.654 61.111 0.00 0.00 0.00 3.72
2187 4253 1.078426 GCGGCTCCAAGGTACACAT 60.078 57.895 0.00 0.00 0.00 3.21
2188 4254 0.177141 GCGGCTCCAAGGTACACATA 59.823 55.000 0.00 0.00 0.00 2.29
2189 4255 1.406341 GCGGCTCCAAGGTACACATAA 60.406 52.381 0.00 0.00 0.00 1.90
2190 4256 2.937873 GCGGCTCCAAGGTACACATAAA 60.938 50.000 0.00 0.00 0.00 1.40
2236 4328 1.545841 TTCTCCGAGAGCAGCAGTAA 58.454 50.000 0.00 0.00 0.00 2.24
2264 4362 7.766278 ACGTTCTTTGACTAGCTAATGATGATT 59.234 33.333 0.00 0.00 0.00 2.57
2325 4453 1.226323 CGCGAGGGAGTACGTGAAG 60.226 63.158 0.00 0.00 41.53 3.02
2487 4618 0.686441 ATCGGGAAGATGGGACGACA 60.686 55.000 0.00 0.00 38.36 4.35
2517 4656 1.804151 GTTTGCACGGTGAAGATAGCA 59.196 47.619 13.29 0.00 0.00 3.49
2592 4734 1.516110 ATGACCAGATGGGGGAAGAG 58.484 55.000 3.48 0.00 42.91 2.85
2636 4778 4.873129 CAGCTATGGCGACGGCGT 62.873 66.667 14.65 14.65 44.37 5.68
2852 5099 0.107643 TGGATCACGTGTTGGCTTCA 59.892 50.000 16.51 3.26 0.00 3.02
2853 5100 1.271325 TGGATCACGTGTTGGCTTCAT 60.271 47.619 16.51 0.00 0.00 2.57
2854 5101 2.027653 TGGATCACGTGTTGGCTTCATA 60.028 45.455 16.51 0.00 0.00 2.15
2855 5102 3.206150 GGATCACGTGTTGGCTTCATAT 58.794 45.455 16.51 0.00 0.00 1.78
3132 5406 7.121168 TCTGCATAGACTGGAAAATTTAACTGG 59.879 37.037 0.00 0.00 0.00 4.00
3412 5705 7.871463 AGACTAAATTTAGTTGCGTTACTGTCT 59.129 33.333 27.27 14.71 43.64 3.41
3416 5709 4.579454 TTAGTTGCGTTACTGTCTCTGT 57.421 40.909 2.38 0.00 0.00 3.41
3475 5823 3.070446 ACAACCTGACAGGACGAATAACA 59.930 43.478 28.56 0.00 37.67 2.41
3476 5824 4.062293 CAACCTGACAGGACGAATAACAA 58.938 43.478 28.56 0.00 37.67 2.83
3550 5908 3.758023 TGGGAAAACATATGCACAGTGAG 59.242 43.478 4.15 0.00 0.00 3.51
3831 6217 2.044555 CGTACACGAGCTCCTCCCA 61.045 63.158 8.47 0.00 43.02 4.37
3863 6249 1.406887 GGCGTCACACCTTATGTCCAT 60.407 52.381 0.00 0.00 40.64 3.41
3869 6255 2.545526 CACACCTTATGTCCATCATCGC 59.454 50.000 0.00 0.00 40.64 4.58
4022 6408 0.249699 ATTCGACACAACGTGAGCCA 60.250 50.000 0.24 0.00 36.96 4.75
4148 6536 3.306703 GTGTTGGTTGTTTGATTGCAGTG 59.693 43.478 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.386413 CCTTCTCCGGCATATGGC 57.614 61.111 18.94 18.94 43.74 4.40
23 24 2.731374 CGATCTCCGGCCTTCTCC 59.269 66.667 0.00 0.00 33.91 3.71
24 25 2.028337 GCGATCTCCGGCCTTCTC 59.972 66.667 0.00 0.00 39.04 2.87
34 35 3.486252 CTTCCCGTCCGGCGATCTC 62.486 68.421 17.96 0.00 44.77 2.75
35 36 3.528370 CTTCCCGTCCGGCGATCT 61.528 66.667 17.96 0.00 44.77 2.75
36 37 3.366739 AACTTCCCGTCCGGCGATC 62.367 63.158 17.96 0.00 44.77 3.69
37 38 3.387947 AACTTCCCGTCCGGCGAT 61.388 61.111 17.96 0.00 44.77 4.58
38 39 4.367023 CAACTTCCCGTCCGGCGA 62.367 66.667 17.96 0.00 44.77 5.54
41 42 3.633116 ACCCAACTTCCCGTCCGG 61.633 66.667 0.00 0.00 0.00 5.14
42 43 2.358247 CACCCAACTTCCCGTCCG 60.358 66.667 0.00 0.00 0.00 4.79
43 44 2.033602 CCACCCAACTTCCCGTCC 59.966 66.667 0.00 0.00 0.00 4.79
44 45 2.671963 GCCACCCAACTTCCCGTC 60.672 66.667 0.00 0.00 0.00 4.79
45 46 4.636435 CGCCACCCAACTTCCCGT 62.636 66.667 0.00 0.00 0.00 5.28
47 48 3.920093 CTCCGCCACCCAACTTCCC 62.920 68.421 0.00 0.00 0.00 3.97
48 49 2.359975 CTCCGCCACCCAACTTCC 60.360 66.667 0.00 0.00 0.00 3.46
49 50 1.966451 CACTCCGCCACCCAACTTC 60.966 63.158 0.00 0.00 0.00 3.01
50 51 2.113139 CACTCCGCCACCCAACTT 59.887 61.111 0.00 0.00 0.00 2.66
51 52 3.953775 CCACTCCGCCACCCAACT 61.954 66.667 0.00 0.00 0.00 3.16
52 53 3.901797 CTCCACTCCGCCACCCAAC 62.902 68.421 0.00 0.00 0.00 3.77
53 54 3.636231 CTCCACTCCGCCACCCAA 61.636 66.667 0.00 0.00 0.00 4.12
54 55 4.954118 ACTCCACTCCGCCACCCA 62.954 66.667 0.00 0.00 0.00 4.51
55 56 4.394712 CACTCCACTCCGCCACCC 62.395 72.222 0.00 0.00 0.00 4.61
56 57 4.394712 CCACTCCACTCCGCCACC 62.395 72.222 0.00 0.00 0.00 4.61
57 58 3.302347 CTCCACTCCACTCCGCCAC 62.302 68.421 0.00 0.00 0.00 5.01
58 59 2.997315 CTCCACTCCACTCCGCCA 60.997 66.667 0.00 0.00 0.00 5.69
59 60 2.680352 TCTCCACTCCACTCCGCC 60.680 66.667 0.00 0.00 0.00 6.13
60 61 2.716017 CCTCTCCACTCCACTCCGC 61.716 68.421 0.00 0.00 0.00 5.54
61 62 0.612174 TTCCTCTCCACTCCACTCCG 60.612 60.000 0.00 0.00 0.00 4.63
62 63 1.484240 CATTCCTCTCCACTCCACTCC 59.516 57.143 0.00 0.00 0.00 3.85
63 64 1.484240 CCATTCCTCTCCACTCCACTC 59.516 57.143 0.00 0.00 0.00 3.51
64 65 1.079490 TCCATTCCTCTCCACTCCACT 59.921 52.381 0.00 0.00 0.00 4.00
65 66 1.484240 CTCCATTCCTCTCCACTCCAC 59.516 57.143 0.00 0.00 0.00 4.02
66 67 1.079490 ACTCCATTCCTCTCCACTCCA 59.921 52.381 0.00 0.00 0.00 3.86
67 68 1.484240 CACTCCATTCCTCTCCACTCC 59.516 57.143 0.00 0.00 0.00 3.85
68 69 1.484240 CCACTCCATTCCTCTCCACTC 59.516 57.143 0.00 0.00 0.00 3.51
69 70 1.577736 CCACTCCATTCCTCTCCACT 58.422 55.000 0.00 0.00 0.00 4.00
70 71 0.107459 GCCACTCCATTCCTCTCCAC 60.107 60.000 0.00 0.00 0.00 4.02
71 72 0.252881 AGCCACTCCATTCCTCTCCA 60.253 55.000 0.00 0.00 0.00 3.86
72 73 1.691434 CTAGCCACTCCATTCCTCTCC 59.309 57.143 0.00 0.00 0.00 3.71
73 74 1.691434 CCTAGCCACTCCATTCCTCTC 59.309 57.143 0.00 0.00 0.00 3.20
74 75 1.292242 TCCTAGCCACTCCATTCCTCT 59.708 52.381 0.00 0.00 0.00 3.69
75 76 1.794714 TCCTAGCCACTCCATTCCTC 58.205 55.000 0.00 0.00 0.00 3.71
76 77 2.503869 ATCCTAGCCACTCCATTCCT 57.496 50.000 0.00 0.00 0.00 3.36
77 78 3.217626 CAAATCCTAGCCACTCCATTCC 58.782 50.000 0.00 0.00 0.00 3.01
78 79 3.217626 CCAAATCCTAGCCACTCCATTC 58.782 50.000 0.00 0.00 0.00 2.67
79 80 2.582636 ACCAAATCCTAGCCACTCCATT 59.417 45.455 0.00 0.00 0.00 3.16
80 81 2.173569 GACCAAATCCTAGCCACTCCAT 59.826 50.000 0.00 0.00 0.00 3.41
81 82 1.559682 GACCAAATCCTAGCCACTCCA 59.440 52.381 0.00 0.00 0.00 3.86
82 83 1.134068 GGACCAAATCCTAGCCACTCC 60.134 57.143 0.00 0.00 45.22 3.85
83 84 1.473434 CGGACCAAATCCTAGCCACTC 60.473 57.143 0.00 0.00 46.69 3.51
84 85 0.541863 CGGACCAAATCCTAGCCACT 59.458 55.000 0.00 0.00 46.69 4.00
85 86 0.539986 TCGGACCAAATCCTAGCCAC 59.460 55.000 0.00 0.00 46.69 5.01
86 87 0.830648 CTCGGACCAAATCCTAGCCA 59.169 55.000 0.00 0.00 46.69 4.75
87 88 0.106894 CCTCGGACCAAATCCTAGCC 59.893 60.000 0.00 0.00 46.69 3.93
88 89 1.069358 CTCCTCGGACCAAATCCTAGC 59.931 57.143 0.00 0.00 46.69 3.42
89 90 1.069358 GCTCCTCGGACCAAATCCTAG 59.931 57.143 0.00 0.00 46.69 3.02
90 91 1.120530 GCTCCTCGGACCAAATCCTA 58.879 55.000 0.00 0.00 46.69 2.94
91 92 1.908483 GCTCCTCGGACCAAATCCT 59.092 57.895 0.00 0.00 46.69 3.24
92 93 1.521681 CGCTCCTCGGACCAAATCC 60.522 63.158 0.00 0.00 45.20 3.01
93 94 4.110493 CGCTCCTCGGACCAAATC 57.890 61.111 0.00 0.00 33.78 2.17
102 103 4.933064 GTCCGCATCCGCTCCTCG 62.933 72.222 0.00 0.00 35.30 4.63
103 104 4.933064 CGTCCGCATCCGCTCCTC 62.933 72.222 0.00 0.00 35.30 3.71
105 106 2.416244 TATTCGTCCGCATCCGCTCC 62.416 60.000 0.00 0.00 35.30 4.70
106 107 0.388649 ATATTCGTCCGCATCCGCTC 60.389 55.000 0.00 0.00 35.30 5.03
107 108 0.885879 TATATTCGTCCGCATCCGCT 59.114 50.000 0.00 0.00 35.30 5.52
108 109 1.588404 CATATATTCGTCCGCATCCGC 59.412 52.381 0.00 0.00 0.00 5.54
109 110 2.598637 CACATATATTCGTCCGCATCCG 59.401 50.000 0.00 0.00 0.00 4.18
110 111 2.930040 CCACATATATTCGTCCGCATCC 59.070 50.000 0.00 0.00 0.00 3.51
111 112 2.930040 CCCACATATATTCGTCCGCATC 59.070 50.000 0.00 0.00 0.00 3.91
112 113 2.354704 CCCCACATATATTCGTCCGCAT 60.355 50.000 0.00 0.00 0.00 4.73
113 114 1.001520 CCCCACATATATTCGTCCGCA 59.998 52.381 0.00 0.00 0.00 5.69
114 115 1.001633 ACCCCACATATATTCGTCCGC 59.998 52.381 0.00 0.00 0.00 5.54
115 116 3.064207 CAACCCCACATATATTCGTCCG 58.936 50.000 0.00 0.00 0.00 4.79
116 117 3.408634 CCAACCCCACATATATTCGTCC 58.591 50.000 0.00 0.00 0.00 4.79
117 118 3.181448 ACCCAACCCCACATATATTCGTC 60.181 47.826 0.00 0.00 0.00 4.20
118 119 2.781174 ACCCAACCCCACATATATTCGT 59.219 45.455 0.00 0.00 0.00 3.85
119 120 3.146066 CACCCAACCCCACATATATTCG 58.854 50.000 0.00 0.00 0.00 3.34
120 121 3.496331 CCACCCAACCCCACATATATTC 58.504 50.000 0.00 0.00 0.00 1.75
121 122 2.178984 CCCACCCAACCCCACATATATT 59.821 50.000 0.00 0.00 0.00 1.28
122 123 1.786441 CCCACCCAACCCCACATATAT 59.214 52.381 0.00 0.00 0.00 0.86
123 124 1.227249 CCCACCCAACCCCACATATA 58.773 55.000 0.00 0.00 0.00 0.86
124 125 2.015081 CCCACCCAACCCCACATAT 58.985 57.895 0.00 0.00 0.00 1.78
125 126 2.925117 GCCCACCCAACCCCACATA 61.925 63.158 0.00 0.00 0.00 2.29
126 127 4.315264 GCCCACCCAACCCCACAT 62.315 66.667 0.00 0.00 0.00 3.21
128 129 3.261677 TAGCCCACCCAACCCCAC 61.262 66.667 0.00 0.00 0.00 4.61
129 130 2.938798 CTAGCCCACCCAACCCCA 60.939 66.667 0.00 0.00 0.00 4.96
130 131 4.442454 GCTAGCCCACCCAACCCC 62.442 72.222 2.29 0.00 0.00 4.95
131 132 4.796495 CGCTAGCCCACCCAACCC 62.796 72.222 9.66 0.00 0.00 4.11
132 133 4.029809 ACGCTAGCCCACCCAACC 62.030 66.667 9.66 0.00 0.00 3.77
133 134 2.746277 CACGCTAGCCCACCCAAC 60.746 66.667 9.66 0.00 0.00 3.77
134 135 4.028490 CCACGCTAGCCCACCCAA 62.028 66.667 9.66 0.00 0.00 4.12
138 139 4.468689 GTCCCCACGCTAGCCCAC 62.469 72.222 9.66 0.00 0.00 4.61
139 140 2.882403 TATGTCCCCACGCTAGCCCA 62.882 60.000 9.66 0.00 0.00 5.36
140 141 2.100879 CTATGTCCCCACGCTAGCCC 62.101 65.000 9.66 0.00 0.00 5.19
141 142 1.367840 CTATGTCCCCACGCTAGCC 59.632 63.158 9.66 0.00 0.00 3.93
142 143 1.301009 GCTATGTCCCCACGCTAGC 60.301 63.158 4.06 4.06 32.38 3.42
143 144 1.007271 CGCTATGTCCCCACGCTAG 60.007 63.158 0.00 0.00 0.00 3.42
144 145 2.495409 CCGCTATGTCCCCACGCTA 61.495 63.158 0.00 0.00 0.00 4.26
145 146 3.849951 CCGCTATGTCCCCACGCT 61.850 66.667 0.00 0.00 0.00 5.07
146 147 3.845259 TCCGCTATGTCCCCACGC 61.845 66.667 0.00 0.00 0.00 5.34
147 148 2.106332 GTCCGCTATGTCCCCACG 59.894 66.667 0.00 0.00 0.00 4.94
148 149 2.106332 CGTCCGCTATGTCCCCAC 59.894 66.667 0.00 0.00 0.00 4.61
149 150 2.363276 ACGTCCGCTATGTCCCCA 60.363 61.111 0.00 0.00 0.00 4.96
150 151 2.106332 CACGTCCGCTATGTCCCC 59.894 66.667 0.00 0.00 0.00 4.81
151 152 2.585247 GCACGTCCGCTATGTCCC 60.585 66.667 0.00 0.00 0.00 4.46
152 153 2.585247 GGCACGTCCGCTATGTCC 60.585 66.667 0.00 0.00 0.00 4.02
153 154 2.585247 GGGCACGTCCGCTATGTC 60.585 66.667 0.00 0.00 34.94 3.06
154 155 4.508128 CGGGCACGTCCGCTATGT 62.508 66.667 0.00 0.00 43.71 2.29
171 172 4.083862 GCGGATATCGGGAGGCCC 62.084 72.222 11.79 0.00 41.09 5.80
172 173 4.083862 GGCGGATATCGGGAGGCC 62.084 72.222 11.79 0.00 39.69 5.19
173 174 4.083862 GGGCGGATATCGGGAGGC 62.084 72.222 11.79 7.95 39.69 4.70
174 175 3.391382 GGGGCGGATATCGGGAGG 61.391 72.222 11.79 0.00 39.69 4.30
175 176 0.686441 TATGGGGCGGATATCGGGAG 60.686 60.000 11.79 0.00 39.69 4.30
176 177 0.031515 ATATGGGGCGGATATCGGGA 60.032 55.000 11.79 0.00 39.69 5.14
177 178 0.837272 AATATGGGGCGGATATCGGG 59.163 55.000 11.79 0.66 39.69 5.14
178 179 2.093181 TCAAATATGGGGCGGATATCGG 60.093 50.000 5.93 5.93 39.69 4.18
179 180 3.118775 TCTCAAATATGGGGCGGATATCG 60.119 47.826 0.00 0.00 42.76 2.92
180 181 4.487714 TCTCAAATATGGGGCGGATATC 57.512 45.455 0.00 0.00 0.00 1.63
181 182 4.385643 CCATCTCAAATATGGGGCGGATAT 60.386 45.833 0.00 0.00 40.27 1.63
182 183 3.054434 CCATCTCAAATATGGGGCGGATA 60.054 47.826 0.00 0.00 40.27 2.59
183 184 2.291153 CCATCTCAAATATGGGGCGGAT 60.291 50.000 0.00 0.00 40.27 4.18
184 185 1.073763 CCATCTCAAATATGGGGCGGA 59.926 52.381 0.00 0.00 40.27 5.54
185 186 1.073763 TCCATCTCAAATATGGGGCGG 59.926 52.381 2.45 0.00 43.52 6.13
186 187 2.566833 TCCATCTCAAATATGGGGCG 57.433 50.000 2.45 0.00 43.52 6.13
187 188 5.759059 TCATATCCATCTCAAATATGGGGC 58.241 41.667 2.45 0.00 43.52 5.80
188 189 6.363065 CCTCATATCCATCTCAAATATGGGG 58.637 44.000 6.20 6.20 43.85 4.96
189 190 6.363065 CCCTCATATCCATCTCAAATATGGG 58.637 44.000 2.45 0.00 43.52 4.00
190 191 6.069206 ACCCCTCATATCCATCTCAAATATGG 60.069 42.308 0.00 0.00 44.51 2.74
191 192 6.827251 CACCCCTCATATCCATCTCAAATATG 59.173 42.308 0.00 0.00 35.58 1.78
192 193 6.579849 GCACCCCTCATATCCATCTCAAATAT 60.580 42.308 0.00 0.00 0.00 1.28
193 194 5.280676 GCACCCCTCATATCCATCTCAAATA 60.281 44.000 0.00 0.00 0.00 1.40
194 195 4.508047 GCACCCCTCATATCCATCTCAAAT 60.508 45.833 0.00 0.00 0.00 2.32
195 196 3.181440 GCACCCCTCATATCCATCTCAAA 60.181 47.826 0.00 0.00 0.00 2.69
196 197 2.373169 GCACCCCTCATATCCATCTCAA 59.627 50.000 0.00 0.00 0.00 3.02
197 198 1.980765 GCACCCCTCATATCCATCTCA 59.019 52.381 0.00 0.00 0.00 3.27
198 199 1.280421 GGCACCCCTCATATCCATCTC 59.720 57.143 0.00 0.00 0.00 2.75
199 200 1.366319 GGCACCCCTCATATCCATCT 58.634 55.000 0.00 0.00 0.00 2.90
200 201 0.036010 CGGCACCCCTCATATCCATC 60.036 60.000 0.00 0.00 0.00 3.51
201 202 1.492133 CCGGCACCCCTCATATCCAT 61.492 60.000 0.00 0.00 0.00 3.41
202 203 2.146724 CCGGCACCCCTCATATCCA 61.147 63.158 0.00 0.00 0.00 3.41
203 204 2.113243 GACCGGCACCCCTCATATCC 62.113 65.000 0.00 0.00 0.00 2.59
204 205 1.371558 GACCGGCACCCCTCATATC 59.628 63.158 0.00 0.00 0.00 1.63
205 206 1.383943 TGACCGGCACCCCTCATAT 60.384 57.895 0.00 0.00 0.00 1.78
206 207 2.039787 TGACCGGCACCCCTCATA 59.960 61.111 0.00 0.00 0.00 2.15
207 208 3.402681 CTGACCGGCACCCCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
217 218 3.530910 AAACACCCGAGCTGACCGG 62.531 63.158 0.00 0.00 46.10 5.28
218 219 2.030562 AAACACCCGAGCTGACCG 59.969 61.111 0.00 0.00 0.00 4.79
219 220 0.321653 ATCAAACACCCGAGCTGACC 60.322 55.000 0.00 0.00 0.00 4.02
220 221 0.798776 CATCAAACACCCGAGCTGAC 59.201 55.000 0.00 0.00 0.00 3.51
221 222 0.955428 GCATCAAACACCCGAGCTGA 60.955 55.000 0.00 0.00 0.00 4.26
222 223 1.503542 GCATCAAACACCCGAGCTG 59.496 57.895 0.00 0.00 0.00 4.24
223 224 1.675641 GGCATCAAACACCCGAGCT 60.676 57.895 0.00 0.00 0.00 4.09
224 225 2.877691 GGCATCAAACACCCGAGC 59.122 61.111 0.00 0.00 0.00 5.03
225 226 2.398554 CCGGCATCAAACACCCGAG 61.399 63.158 0.00 0.00 43.20 4.63
226 227 2.359354 CCGGCATCAAACACCCGA 60.359 61.111 0.00 0.00 43.20 5.14
227 228 1.801309 AAACCGGCATCAAACACCCG 61.801 55.000 0.00 0.00 40.39 5.28
228 229 0.038618 GAAACCGGCATCAAACACCC 60.039 55.000 0.00 0.00 0.00 4.61
229 230 0.671251 TGAAACCGGCATCAAACACC 59.329 50.000 0.00 0.00 0.00 4.16
230 231 1.335872 CCTGAAACCGGCATCAAACAC 60.336 52.381 0.00 0.00 0.00 3.32
231 232 0.958091 CCTGAAACCGGCATCAAACA 59.042 50.000 0.00 0.00 0.00 2.83
232 233 0.388520 GCCTGAAACCGGCATCAAAC 60.389 55.000 0.00 0.00 46.77 2.93
233 234 1.963679 GCCTGAAACCGGCATCAAA 59.036 52.632 0.00 0.00 46.77 2.69
234 235 3.680156 GCCTGAAACCGGCATCAA 58.320 55.556 0.00 0.00 46.77 2.57
241 242 3.508840 GATGGGCGCCTGAAACCG 61.509 66.667 28.56 0.00 0.00 4.44
242 243 2.044946 AGATGGGCGCCTGAAACC 60.045 61.111 28.56 9.02 0.00 3.27
243 244 2.409870 CCAGATGGGCGCCTGAAAC 61.410 63.158 28.56 9.87 32.37 2.78
244 245 2.045045 CCAGATGGGCGCCTGAAA 60.045 61.111 28.56 10.38 32.37 2.69
254 255 2.186903 CGGTTCCGACCCAGATGG 59.813 66.667 5.19 0.00 43.42 3.51
255 256 2.180159 AACCGGTTCCGACCCAGATG 62.180 60.000 15.86 0.00 43.42 2.90
256 257 0.615544 TAACCGGTTCCGACCCAGAT 60.616 55.000 26.16 0.00 43.42 2.90
257 258 1.228831 TAACCGGTTCCGACCCAGA 60.229 57.895 26.16 0.00 43.42 3.86
258 259 1.217244 CTAACCGGTTCCGACCCAG 59.783 63.158 26.16 10.08 43.42 4.45
259 260 1.533753 ACTAACCGGTTCCGACCCA 60.534 57.895 26.16 2.84 43.42 4.51
260 261 1.079612 CACTAACCGGTTCCGACCC 60.080 63.158 26.16 0.00 43.42 4.46
261 262 0.533951 ATCACTAACCGGTTCCGACC 59.466 55.000 26.16 0.00 42.87 4.79
262 263 1.796617 CGATCACTAACCGGTTCCGAC 60.797 57.143 26.16 10.68 0.00 4.79
263 264 0.452987 CGATCACTAACCGGTTCCGA 59.547 55.000 26.16 18.64 0.00 4.55
264 265 0.526954 CCGATCACTAACCGGTTCCG 60.527 60.000 26.16 18.51 38.55 4.30
265 266 0.808847 GCCGATCACTAACCGGTTCC 60.809 60.000 26.16 6.41 44.63 3.62
266 267 0.108520 TGCCGATCACTAACCGGTTC 60.109 55.000 26.16 7.46 44.63 3.62
267 268 0.539986 ATGCCGATCACTAACCGGTT 59.460 50.000 25.64 25.64 44.63 4.44
268 269 0.104304 GATGCCGATCACTAACCGGT 59.896 55.000 0.00 0.00 44.63 5.28
269 270 0.389391 AGATGCCGATCACTAACCGG 59.611 55.000 0.00 0.00 45.51 5.28
270 271 2.128035 GAAGATGCCGATCACTAACCG 58.872 52.381 0.00 0.00 0.00 4.44
271 272 2.103263 AGGAAGATGCCGATCACTAACC 59.897 50.000 0.00 0.00 0.00 2.85
272 273 3.126831 CAGGAAGATGCCGATCACTAAC 58.873 50.000 0.00 0.00 0.00 2.34
273 274 3.031013 TCAGGAAGATGCCGATCACTAA 58.969 45.455 0.00 0.00 0.00 2.24
274 275 2.625314 CTCAGGAAGATGCCGATCACTA 59.375 50.000 0.00 0.00 0.00 2.74
275 276 1.411977 CTCAGGAAGATGCCGATCACT 59.588 52.381 0.00 0.00 0.00 3.41
276 277 1.863267 CTCAGGAAGATGCCGATCAC 58.137 55.000 0.00 0.00 0.00 3.06
277 278 0.105593 GCTCAGGAAGATGCCGATCA 59.894 55.000 0.00 0.00 0.00 2.92
278 279 0.105593 TGCTCAGGAAGATGCCGATC 59.894 55.000 0.00 0.00 0.00 3.69
279 280 0.763652 ATGCTCAGGAAGATGCCGAT 59.236 50.000 0.00 0.00 0.00 4.18
280 281 1.413118 TATGCTCAGGAAGATGCCGA 58.587 50.000 0.00 0.00 0.00 5.54
281 282 2.074576 CATATGCTCAGGAAGATGCCG 58.925 52.381 0.00 0.00 0.00 5.69
282 283 3.336468 CTCATATGCTCAGGAAGATGCC 58.664 50.000 0.00 0.00 0.00 4.40
283 284 3.336468 CCTCATATGCTCAGGAAGATGC 58.664 50.000 3.32 0.00 0.00 3.91
284 285 3.581770 TCCCTCATATGCTCAGGAAGATG 59.418 47.826 9.93 0.00 0.00 2.90
285 286 3.839490 CTCCCTCATATGCTCAGGAAGAT 59.161 47.826 9.93 0.00 0.00 2.40
286 287 3.237746 CTCCCTCATATGCTCAGGAAGA 58.762 50.000 9.93 0.72 0.00 2.87
287 288 2.302445 CCTCCCTCATATGCTCAGGAAG 59.698 54.545 9.93 0.07 0.00 3.46
288 289 2.333069 CCTCCCTCATATGCTCAGGAA 58.667 52.381 9.93 0.00 0.00 3.36
289 290 1.221523 ACCTCCCTCATATGCTCAGGA 59.778 52.381 9.93 6.59 0.00 3.86
290 291 1.727062 ACCTCCCTCATATGCTCAGG 58.273 55.000 0.00 0.00 0.00 3.86
291 292 3.853355 AAACCTCCCTCATATGCTCAG 57.147 47.619 0.00 0.00 0.00 3.35
292 293 4.103153 CCTTAAACCTCCCTCATATGCTCA 59.897 45.833 0.00 0.00 0.00 4.26
293 294 4.646572 CCTTAAACCTCCCTCATATGCTC 58.353 47.826 0.00 0.00 0.00 4.26
294 295 3.181439 GCCTTAAACCTCCCTCATATGCT 60.181 47.826 0.00 0.00 0.00 3.79
295 296 3.149981 GCCTTAAACCTCCCTCATATGC 58.850 50.000 0.00 0.00 0.00 3.14
296 297 3.403038 CGCCTTAAACCTCCCTCATATG 58.597 50.000 0.00 0.00 0.00 1.78
297 298 2.224548 GCGCCTTAAACCTCCCTCATAT 60.225 50.000 0.00 0.00 0.00 1.78
298 299 1.140252 GCGCCTTAAACCTCCCTCATA 59.860 52.381 0.00 0.00 0.00 2.15
299 300 0.107165 GCGCCTTAAACCTCCCTCAT 60.107 55.000 0.00 0.00 0.00 2.90
300 301 1.198759 AGCGCCTTAAACCTCCCTCA 61.199 55.000 2.29 0.00 0.00 3.86
301 302 0.462225 GAGCGCCTTAAACCTCCCTC 60.462 60.000 2.29 0.00 0.00 4.30
302 303 1.602771 GAGCGCCTTAAACCTCCCT 59.397 57.895 2.29 0.00 0.00 4.20
303 304 1.814169 CGAGCGCCTTAAACCTCCC 60.814 63.158 2.29 0.00 0.00 4.30
304 305 1.814169 CCGAGCGCCTTAAACCTCC 60.814 63.158 2.29 0.00 0.00 4.30
305 306 0.672711 AACCGAGCGCCTTAAACCTC 60.673 55.000 2.29 0.00 0.00 3.85
306 307 0.953960 CAACCGAGCGCCTTAAACCT 60.954 55.000 2.29 0.00 0.00 3.50
307 308 1.232621 ACAACCGAGCGCCTTAAACC 61.233 55.000 2.29 0.00 0.00 3.27
308 309 1.392510 CTACAACCGAGCGCCTTAAAC 59.607 52.381 2.29 0.00 0.00 2.01
309 310 1.273048 TCTACAACCGAGCGCCTTAAA 59.727 47.619 2.29 0.00 0.00 1.52
310 311 0.889994 TCTACAACCGAGCGCCTTAA 59.110 50.000 2.29 0.00 0.00 1.85
311 312 1.108776 ATCTACAACCGAGCGCCTTA 58.891 50.000 2.29 0.00 0.00 2.69
312 313 0.460284 CATCTACAACCGAGCGCCTT 60.460 55.000 2.29 0.00 0.00 4.35
313 314 1.141881 CATCTACAACCGAGCGCCT 59.858 57.895 2.29 0.00 0.00 5.52
314 315 2.526120 GCATCTACAACCGAGCGCC 61.526 63.158 2.29 0.00 0.00 6.53
315 316 1.483424 GAGCATCTACAACCGAGCGC 61.483 60.000 0.00 0.00 0.00 5.92
316 317 2.582959 GAGCATCTACAACCGAGCG 58.417 57.895 0.00 0.00 0.00 5.03
330 331 3.876341 TGATTGTATGCATGTGAGAGCA 58.124 40.909 10.16 0.00 45.92 4.26
331 332 4.755629 AGATGATTGTATGCATGTGAGAGC 59.244 41.667 10.16 0.00 0.00 4.09
332 333 6.862711 AAGATGATTGTATGCATGTGAGAG 57.137 37.500 10.16 0.00 0.00 3.20
333 334 6.261603 GGAAAGATGATTGTATGCATGTGAGA 59.738 38.462 10.16 0.00 0.00 3.27
334 335 6.436261 GGAAAGATGATTGTATGCATGTGAG 58.564 40.000 10.16 0.00 0.00 3.51
335 336 5.300034 GGGAAAGATGATTGTATGCATGTGA 59.700 40.000 10.16 0.00 0.00 3.58
336 337 5.508489 GGGGAAAGATGATTGTATGCATGTG 60.508 44.000 10.16 0.00 0.00 3.21
337 338 4.586001 GGGGAAAGATGATTGTATGCATGT 59.414 41.667 10.16 0.00 0.00 3.21
338 339 4.831155 AGGGGAAAGATGATTGTATGCATG 59.169 41.667 10.16 0.00 0.00 4.06
339 340 5.070823 AGGGGAAAGATGATTGTATGCAT 57.929 39.130 3.79 3.79 0.00 3.96
340 341 4.166725 AGAGGGGAAAGATGATTGTATGCA 59.833 41.667 0.00 0.00 0.00 3.96
341 342 4.723309 AGAGGGGAAAGATGATTGTATGC 58.277 43.478 0.00 0.00 0.00 3.14
342 343 7.559170 AGAAAAGAGGGGAAAGATGATTGTATG 59.441 37.037 0.00 0.00 0.00 2.39
343 344 7.646884 AGAAAAGAGGGGAAAGATGATTGTAT 58.353 34.615 0.00 0.00 0.00 2.29
344 345 7.032598 AGAAAAGAGGGGAAAGATGATTGTA 57.967 36.000 0.00 0.00 0.00 2.41
345 346 5.896963 AGAAAAGAGGGGAAAGATGATTGT 58.103 37.500 0.00 0.00 0.00 2.71
346 347 6.127507 GGAAGAAAAGAGGGGAAAGATGATTG 60.128 42.308 0.00 0.00 0.00 2.67
347 348 5.954752 GGAAGAAAAGAGGGGAAAGATGATT 59.045 40.000 0.00 0.00 0.00 2.57
348 349 5.015603 TGGAAGAAAAGAGGGGAAAGATGAT 59.984 40.000 0.00 0.00 0.00 2.45
349 350 4.353788 TGGAAGAAAAGAGGGGAAAGATGA 59.646 41.667 0.00 0.00 0.00 2.92
350 351 4.666512 TGGAAGAAAAGAGGGGAAAGATG 58.333 43.478 0.00 0.00 0.00 2.90
351 352 5.339423 TTGGAAGAAAAGAGGGGAAAGAT 57.661 39.130 0.00 0.00 0.00 2.40
352 353 4.806952 TTGGAAGAAAAGAGGGGAAAGA 57.193 40.909 0.00 0.00 0.00 2.52
353 354 5.010112 GTCTTTGGAAGAAAAGAGGGGAAAG 59.990 44.000 0.00 0.00 44.65 2.62
354 355 4.893524 GTCTTTGGAAGAAAAGAGGGGAAA 59.106 41.667 0.00 0.00 44.65 3.13
355 356 4.470602 GTCTTTGGAAGAAAAGAGGGGAA 58.529 43.478 0.00 0.00 44.65 3.97
356 357 3.181433 GGTCTTTGGAAGAAAAGAGGGGA 60.181 47.826 0.00 0.00 44.65 4.81
357 358 3.157881 GGTCTTTGGAAGAAAAGAGGGG 58.842 50.000 0.00 0.00 44.65 4.79
358 359 3.832527 TGGTCTTTGGAAGAAAAGAGGG 58.167 45.455 0.00 0.00 44.65 4.30
359 360 6.003950 TGTATGGTCTTTGGAAGAAAAGAGG 58.996 40.000 0.00 0.00 44.65 3.69
360 361 6.486657 TGTGTATGGTCTTTGGAAGAAAAGAG 59.513 38.462 0.00 0.00 44.65 2.85
361 362 6.361433 TGTGTATGGTCTTTGGAAGAAAAGA 58.639 36.000 0.00 0.00 42.47 2.52
362 363 6.633500 TGTGTATGGTCTTTGGAAGAAAAG 57.367 37.500 0.00 0.00 39.67 2.27
363 364 6.183360 GGTTGTGTATGGTCTTTGGAAGAAAA 60.183 38.462 0.00 0.00 39.67 2.29
364 365 5.300792 GGTTGTGTATGGTCTTTGGAAGAAA 59.699 40.000 0.00 0.00 39.67 2.52
365 366 4.825085 GGTTGTGTATGGTCTTTGGAAGAA 59.175 41.667 0.00 0.00 39.67 2.52
366 367 4.141367 TGGTTGTGTATGGTCTTTGGAAGA 60.141 41.667 0.00 0.00 34.51 2.87
367 368 4.141287 TGGTTGTGTATGGTCTTTGGAAG 58.859 43.478 0.00 0.00 0.00 3.46
368 369 4.171878 TGGTTGTGTATGGTCTTTGGAA 57.828 40.909 0.00 0.00 0.00 3.53
369 370 3.866703 TGGTTGTGTATGGTCTTTGGA 57.133 42.857 0.00 0.00 0.00 3.53
370 371 3.826157 ACATGGTTGTGTATGGTCTTTGG 59.174 43.478 0.00 0.00 33.85 3.28
371 372 5.009510 TCAACATGGTTGTGTATGGTCTTTG 59.990 40.000 8.75 0.00 35.83 2.77
372 373 5.136828 TCAACATGGTTGTGTATGGTCTTT 58.863 37.500 8.75 0.00 35.83 2.52
373 374 4.724399 TCAACATGGTTGTGTATGGTCTT 58.276 39.130 8.75 0.00 35.83 3.01
374 375 4.365514 TCAACATGGTTGTGTATGGTCT 57.634 40.909 8.75 0.00 35.83 3.85
375 376 5.446143 TTTCAACATGGTTGTGTATGGTC 57.554 39.130 8.75 0.00 35.83 4.02
376 377 7.147915 GGATATTTCAACATGGTTGTGTATGGT 60.148 37.037 8.75 0.00 35.83 3.55
377 378 7.068593 AGGATATTTCAACATGGTTGTGTATGG 59.931 37.037 8.75 0.00 35.83 2.74
488 493 8.744568 TGATATATGTGCATGGAACTAAAACA 57.255 30.769 0.00 0.00 0.00 2.83
591 602 1.489230 GGGAAGTCCACGGTCCATTAT 59.511 52.381 0.00 0.00 37.91 1.28
592 603 0.906775 GGGAAGTCCACGGTCCATTA 59.093 55.000 0.00 0.00 37.91 1.90
679 701 2.767644 TGGGTCGAGAATCTATGGGA 57.232 50.000 0.00 0.00 0.00 4.37
926 970 4.496507 CGAGTCTCGCTCAGTTCATCAATA 60.497 45.833 9.74 0.00 44.33 1.90
1103 1164 4.344474 CCGATCGAGGTAGGGCGC 62.344 72.222 18.66 0.00 0.00 6.53
1125 1186 1.123217 GATATCTGTGCGCGATGAACG 59.877 52.381 12.10 0.00 45.66 3.95
1150 1211 3.265221 TCAAAGAGATCCATCAACTGGCT 59.735 43.478 0.00 0.00 45.52 4.75
1366 1439 1.061711 CGCAGCTGCATACAAAGAGAC 59.938 52.381 36.03 4.30 42.21 3.36
1405 1478 1.229304 TCCTCCTTCCTGCTCTGCA 60.229 57.895 0.00 0.00 36.92 4.41
1406 1479 1.521616 CTCCTCCTTCCTGCTCTGC 59.478 63.158 0.00 0.00 0.00 4.26
1407 1480 0.325110 TCCTCCTCCTTCCTGCTCTG 60.325 60.000 0.00 0.00 0.00 3.35
1577 1660 1.300931 CGGCAGGGATGATGTACGG 60.301 63.158 0.00 0.00 0.00 4.02
1635 1733 0.179081 GGGGAGGAAATCGAGTTCGG 60.179 60.000 18.33 0.00 40.29 4.30
1640 1738 1.134670 GTGTGAGGGGAGGAAATCGAG 60.135 57.143 0.00 0.00 0.00 4.04
1664 1762 4.586235 AAAGCTGCAGCCACCGGT 62.586 61.111 34.39 12.93 43.38 5.28
1681 1779 1.231751 AGGTGGAGGATGAGGAGGGA 61.232 60.000 0.00 0.00 0.00 4.20
1690 1788 1.231641 CGAGGAGGAGGTGGAGGAT 59.768 63.158 0.00 0.00 0.00 3.24
1717 1815 2.511145 CTGCAAGAGAGCGAGGCC 60.511 66.667 0.00 0.00 34.07 5.19
2018 3611 1.376037 GCTGGTGGCTGTACCTCAC 60.376 63.158 6.83 0.00 41.43 3.51
2169 4235 0.177141 TATGTGTACCTTGGAGCCGC 59.823 55.000 0.00 0.00 0.00 6.53
2188 4254 8.951787 AGTATGCATGCATTCAAATTATGTTT 57.048 26.923 36.23 11.99 37.82 2.83
2212 4296 3.122297 CTGCTGCTCTCGGAGAAATTAG 58.878 50.000 9.32 6.22 34.09 1.73
2236 4328 5.779922 TCATTAGCTAGTCAAAGAACGTGT 58.220 37.500 0.00 0.00 0.00 4.49
2264 4362 7.870954 TCTTGTCTTTCTGTAAAGCGAGAAATA 59.129 33.333 0.00 0.00 41.64 1.40
2325 4453 1.002544 CAGACCTTGGACTTGAGGGAC 59.997 57.143 0.00 0.00 37.36 4.46
2408 4536 2.506438 CGTCTTCTTCGACCCGGC 60.506 66.667 0.00 0.00 0.00 6.13
2409 4537 3.271014 TCGTCTTCTTCGACCCGG 58.729 61.111 0.00 0.00 32.30 5.73
2487 4618 1.157870 CCGTGCAAACCTCACTCGTT 61.158 55.000 0.00 0.00 32.54 3.85
2623 4765 2.507547 GTTGACGCCGTCGCCATA 60.508 61.111 13.18 0.00 39.84 2.74
2761 4918 7.712639 AGCTCAGTTGGTTGATTATGTATACAG 59.287 37.037 11.91 0.00 0.00 2.74
2852 5099 6.127366 CCACTGGCCAACTTGTTGAAATATAT 60.127 38.462 7.01 0.00 0.00 0.86
2853 5100 5.184864 CCACTGGCCAACTTGTTGAAATATA 59.815 40.000 7.01 0.00 0.00 0.86
2854 5101 4.021192 CCACTGGCCAACTTGTTGAAATAT 60.021 41.667 7.01 0.00 0.00 1.28
2855 5102 3.320541 CCACTGGCCAACTTGTTGAAATA 59.679 43.478 7.01 0.00 0.00 1.40
3079 5348 3.610040 AAAGAGTGTGACGCCATATGA 57.390 42.857 3.65 0.00 0.00 2.15
3132 5406 3.065233 TGCAACAACCGCATCAAGATATC 59.935 43.478 0.00 0.00 33.55 1.63
3412 5705 6.330278 CGAACAGTAGAATTGTCCATACAGA 58.670 40.000 0.00 0.00 36.83 3.41
3416 5709 4.141801 CCCCGAACAGTAGAATTGTCCATA 60.142 45.833 0.00 0.00 0.00 2.74
3475 5823 4.200092 GGCGATCTTCCATTTAGTCCTTT 58.800 43.478 0.00 0.00 0.00 3.11
3476 5824 3.741388 CGGCGATCTTCCATTTAGTCCTT 60.741 47.826 0.00 0.00 0.00 3.36
3550 5908 6.726230 TGCTGATGAGTCGACTACTAATTAC 58.274 40.000 20.09 3.71 39.07 1.89
3918 6304 2.745884 CAACGCCGCCATCTTGGA 60.746 61.111 0.00 0.00 40.96 3.53
3995 6381 6.245710 GCTCACGTTGTGTCGAATAAATAAAC 59.754 38.462 0.00 0.00 34.79 2.01
4148 6536 5.941647 TGGGTATTGCTACTTTTGTTACTCC 59.058 40.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.