Multiple sequence alignment - TraesCS3B01G120900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G120900 chr3B 100.000 2849 0 0 1 2849 91146473 91149321 0.000000e+00 5262.0
1 TraesCS3B01G120900 chr3B 85.501 469 61 6 2385 2849 451546826 451546361 1.530000e-132 483.0
2 TraesCS3B01G120900 chr3B 84.599 461 63 7 2385 2841 750338320 750337864 4.330000e-123 451.0
3 TraesCS3B01G120900 chr3A 91.284 1721 82 30 416 2112 67123242 67124918 0.000000e+00 2285.0
4 TraesCS3B01G120900 chr3A 87.222 360 43 3 48 404 67122823 67123182 9.500000e-110 407.0
5 TraesCS3B01G120900 chr3A 75.061 409 80 20 8 404 627792311 627791913 1.360000e-38 171.0
6 TraesCS3B01G120900 chr3A 95.349 43 2 0 8 50 67122765 67122807 5.090000e-08 69.4
7 TraesCS3B01G120900 chr3D 92.893 1576 71 16 834 2387 58107576 58109132 0.000000e+00 2252.0
8 TraesCS3B01G120900 chr3D 84.211 475 56 13 2385 2847 120104400 120104867 7.240000e-121 444.0
9 TraesCS3B01G120900 chr2A 92.623 366 27 0 1034 1399 4113742 4114107 6.990000e-146 527.0
10 TraesCS3B01G120900 chr2A 78.679 333 63 8 70 399 433481759 433482086 6.180000e-52 215.0
11 TraesCS3B01G120900 chr2A 74.658 292 56 14 70 351 143836425 143836708 2.320000e-21 113.0
12 TraesCS3B01G120900 chr2A 95.349 43 1 1 66 107 734769923 734769965 1.830000e-07 67.6
13 TraesCS3B01G120900 chr2D 85.043 468 66 4 2384 2849 139257554 139257089 9.240000e-130 473.0
14 TraesCS3B01G120900 chr2D 82.979 470 62 10 2385 2842 607603378 607602915 2.640000e-110 409.0
15 TraesCS3B01G120900 chr2D 74.394 289 62 11 70 351 372819202 372819485 2.320000e-21 113.0
16 TraesCS3B01G120900 chr2B 84.582 467 65 5 2387 2849 211610638 211611101 9.300000e-125 457.0
17 TraesCS3B01G120900 chr2B 81.579 304 52 4 94 395 460615053 460615354 6.100000e-62 248.0
18 TraesCS3B01G120900 chr2B 94.615 130 7 0 1357 1486 691405867 691405738 4.810000e-48 202.0
19 TraesCS3B01G120900 chr2B 78.680 197 8 17 1256 1451 514335039 514335202 1.810000e-17 100.0
20 TraesCS3B01G120900 chr2B 97.872 47 1 0 1389 1435 779220380 779220426 6.540000e-12 82.4
21 TraesCS3B01G120900 chr2B 90.000 50 5 0 1197 1246 691405913 691405864 6.590000e-07 65.8
22 TraesCS3B01G120900 chr1D 83.871 465 65 5 2385 2840 351509685 351510148 4.360000e-118 435.0
23 TraesCS3B01G120900 chr1D 83.864 471 59 12 2383 2842 100453197 100453661 1.570000e-117 433.0
24 TraesCS3B01G120900 chr6D 84.187 449 64 4 2385 2829 91496955 91497400 2.030000e-116 429.0
25 TraesCS3B01G120900 chr4B 79.586 338 61 7 71 404 323780087 323780420 4.750000e-58 235.0
26 TraesCS3B01G120900 chr4B 77.941 136 18 11 408 534 269066614 269066746 1.090000e-09 75.0
27 TraesCS3B01G120900 chr5B 77.711 332 67 7 70 396 672808308 672808637 2.240000e-46 196.0
28 TraesCS3B01G120900 chr5B 80.000 135 17 9 408 534 91882336 91882204 1.090000e-14 91.6
29 TraesCS3B01G120900 chr7A 79.915 234 36 8 98 328 406442239 406442014 8.170000e-36 161.0
30 TraesCS3B01G120900 chr7A 90.323 62 6 0 343 404 194192515 194192576 6.540000e-12 82.4
31 TraesCS3B01G120900 chr7A 87.500 72 8 1 333 404 194234417 194234487 6.540000e-12 82.4
32 TraesCS3B01G120900 chr4D 76.025 317 55 16 94 404 2800900 2801201 8.230000e-31 145.0
33 TraesCS3B01G120900 chr4D 75.510 294 41 16 94 383 11854450 11854184 6.450000e-22 115.0
34 TraesCS3B01G120900 chr7B 79.111 225 33 13 190 404 604104389 604104609 2.960000e-30 143.0
35 TraesCS3B01G120900 chr7B 78.014 141 20 10 404 535 227657781 227657919 8.460000e-11 78.7
36 TraesCS3B01G120900 chr1A 80.147 136 19 8 225 356 587849740 587849609 8.400000e-16 95.3
37 TraesCS3B01G120900 chrUn 79.389 131 19 6 411 534 83605519 83605390 5.060000e-13 86.1
38 TraesCS3B01G120900 chr5D 79.259 135 18 7 406 534 541174567 541174697 5.060000e-13 86.1
39 TraesCS3B01G120900 chr5D 77.612 134 22 7 408 534 241090416 241090284 1.090000e-09 75.0
40 TraesCS3B01G120900 chr6B 78.472 144 20 9 411 547 274791346 274791207 1.820000e-12 84.2
41 TraesCS3B01G120900 chr6A 78.417 139 21 8 404 534 221027317 221027454 6.540000e-12 82.4
42 TraesCS3B01G120900 chr1B 81.081 74 10 4 600 671 512878617 512878688 3.970000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G120900 chr3B 91146473 91149321 2848 False 5262.000000 5262 100.000 1 2849 1 chr3B.!!$F1 2848
1 TraesCS3B01G120900 chr3A 67122765 67124918 2153 False 920.466667 2285 91.285 8 2112 3 chr3A.!!$F1 2104
2 TraesCS3B01G120900 chr3D 58107576 58109132 1556 False 2252.000000 2252 92.893 834 2387 1 chr3D.!!$F1 1553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
830 901 0.450583 TTCCTACTACTGCTCACGCG 59.549 55.0 3.53 3.53 39.65 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2546 2646 0.028902 GTCTGTTTTGTGTCCGTGCC 59.971 55.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 85 3.610911 CACAAGATAGAACCCAAGTCCC 58.389 50.000 0.00 0.00 0.00 4.46
67 87 2.576191 CAAGATAGAACCCAAGTCCCCA 59.424 50.000 0.00 0.00 0.00 4.96
68 88 2.929301 AGATAGAACCCAAGTCCCCAA 58.071 47.619 0.00 0.00 0.00 4.12
84 104 2.422803 CCCCAACTTGAAGACCAGTTCA 60.423 50.000 0.00 0.00 34.56 3.18
88 108 3.199880 ACTTGAAGACCAGTTCAGTGG 57.800 47.619 0.00 0.00 44.01 4.00
92 112 2.906389 TGAAGACCAGTTCAGTGGCTAT 59.094 45.455 0.09 0.00 41.90 2.97
105 125 2.365617 AGTGGCTATTGACGGTATCCTG 59.634 50.000 0.00 0.00 0.00 3.86
192 212 3.515602 AAGAATGGGACTCATATGCCC 57.484 47.619 9.38 9.38 42.38 5.36
193 213 1.707427 AGAATGGGACTCATATGCCCC 59.293 52.381 16.24 16.24 41.31 5.80
195 215 1.492133 ATGGGACTCATATGCCCCGG 61.492 60.000 17.28 0.00 41.73 5.73
201 221 4.704833 CATATGCCCCGGCCCTCG 62.705 72.222 2.62 0.00 41.09 4.63
203 223 4.954118 TATGCCCCGGCCCTCGAT 62.954 66.667 2.62 0.00 42.43 3.59
204 224 2.815684 ATATGCCCCGGCCCTCGATA 62.816 60.000 2.62 0.00 42.43 2.92
213 233 1.202582 CGGCCCTCGATATACTCAAGG 59.797 57.143 0.00 0.00 42.43 3.61
225 245 2.770164 ACTCAAGGTGGAATCCTTCG 57.230 50.000 0.00 0.00 44.87 3.79
234 254 3.003480 GTGGAATCCTTCGAAGACTTGG 58.997 50.000 26.61 10.41 34.32 3.61
242 262 0.669619 TCGAAGACTTGGCGTACACA 59.330 50.000 0.00 0.00 0.00 3.72
260 281 6.894517 CGTACACATCAAGACGTATTTGAATG 59.105 38.462 16.14 17.50 38.01 2.67
290 312 5.999205 TGTTTACCCTAGATTGTAACCGA 57.001 39.130 0.00 0.00 0.00 4.69
303 325 5.866335 TTGTAACCGATCATGTGTAAACC 57.134 39.130 0.00 0.00 0.00 3.27
307 329 4.402056 ACCGATCATGTGTAAACCCTAG 57.598 45.455 0.00 0.00 0.00 3.02
316 338 2.366590 GTGTAAACCCTAGATACCCCGG 59.633 54.545 0.00 0.00 0.00 5.73
328 350 4.691238 AGATACCCCGGTGCCTATATAAA 58.309 43.478 0.00 0.00 0.00 1.40
336 358 2.901839 GGTGCCTATATAAACCGAGGGA 59.098 50.000 0.00 0.00 0.00 4.20
343 365 6.171213 CCTATATAAACCGAGGGATTTGGTC 58.829 44.000 0.00 0.00 43.21 4.02
344 366 2.793288 TAAACCGAGGGATTTGGTCC 57.207 50.000 0.00 0.00 43.21 4.46
354 376 3.166489 GGATTTGGTCCGTAGAGACAG 57.834 52.381 0.00 0.00 38.59 3.51
355 377 2.758979 GGATTTGGTCCGTAGAGACAGA 59.241 50.000 0.00 0.00 38.59 3.41
360 382 2.753452 TGGTCCGTAGAGACAGACATTC 59.247 50.000 0.00 0.00 38.59 2.67
364 386 3.444034 TCCGTAGAGACAGACATTCAAGG 59.556 47.826 0.00 0.00 0.00 3.61
366 388 2.777832 AGAGACAGACATTCAAGGCC 57.222 50.000 0.00 0.00 0.00 5.19
389 411 7.038658 GGCCTAGAGGTTAGAACTCATTCATAT 60.039 40.741 0.00 0.00 37.43 1.78
390 412 7.816995 GCCTAGAGGTTAGAACTCATTCATATG 59.183 40.741 0.00 0.00 37.43 1.78
396 418 8.592809 AGGTTAGAACTCATTCATATGATCTCC 58.407 37.037 6.17 4.20 39.94 3.71
404 426 9.192642 ACTCATTCATATGATCTCCAGATAGAG 57.807 37.037 6.17 7.44 39.94 2.43
405 427 9.411189 CTCATTCATATGATCTCCAGATAGAGA 57.589 37.037 6.17 0.00 46.59 3.10
408 430 9.994017 ATTCATATGATCTCCAGATAGAGAAGA 57.006 33.333 6.17 0.00 45.70 2.87
409 431 9.819754 TTCATATGATCTCCAGATAGAGAAGAA 57.180 33.333 6.17 0.00 45.70 2.52
414 436 8.634335 TGATCTCCAGATAGAGAAGAAGTATG 57.366 38.462 0.00 0.00 45.70 2.39
430 500 8.990163 AAGAAGTATGGTTTTACCTCTTCAAA 57.010 30.769 19.70 0.00 40.18 2.69
435 505 4.874199 TGGTTTTACCTCTTCAAAAGGGT 58.126 39.130 0.00 0.00 39.58 4.34
436 506 4.647399 TGGTTTTACCTCTTCAAAAGGGTG 59.353 41.667 8.99 0.00 39.58 4.61
444 514 1.001378 CTTCAAAAGGGTGCGAACCTG 60.001 52.381 13.69 2.40 38.63 4.00
450 520 2.112297 GGTGCGAACCTGGGTGAA 59.888 61.111 4.88 0.00 0.00 3.18
461 531 1.618343 CCTGGGTGAAAATTGTGTCCC 59.382 52.381 0.00 0.00 35.85 4.46
462 532 1.618343 CTGGGTGAAAATTGTGTCCCC 59.382 52.381 0.00 0.00 34.54 4.81
470 540 6.265876 GGTGAAAATTGTGTCCCCTTTACTTA 59.734 38.462 0.00 0.00 0.00 2.24
487 557 9.530633 CCTTTACTTATAGTGTACCAAGATCAC 57.469 37.037 0.00 0.00 0.00 3.06
493 564 3.239449 AGTGTACCAAGATCACCAGTCA 58.761 45.455 0.00 0.00 33.21 3.41
496 567 0.987294 ACCAAGATCACCAGTCAGGG 59.013 55.000 0.00 0.00 43.89 4.45
497 568 1.279496 CCAAGATCACCAGTCAGGGA 58.721 55.000 0.00 0.00 43.89 4.20
524 595 4.819082 CGAGATCCGGCGGTTTTA 57.181 55.556 27.32 6.68 33.91 1.52
525 596 3.053662 CGAGATCCGGCGGTTTTAA 57.946 52.632 27.32 6.22 33.91 1.52
556 627 6.263842 ACACATGTGATGACTTTGTCAATCTT 59.736 34.615 31.94 0.00 45.96 2.40
571 642 5.240623 TGTCAATCTTAAATTGTGTCGGCTT 59.759 36.000 0.00 0.00 0.00 4.35
572 643 6.428465 TGTCAATCTTAAATTGTGTCGGCTTA 59.572 34.615 0.00 0.00 0.00 3.09
588 659 3.058363 CGGCTTAGTATCTCCGAGGTAAC 60.058 52.174 0.00 0.00 44.23 2.50
603 674 1.134189 GGTAACAGGGGTAGGATGTGC 60.134 57.143 0.00 0.00 0.00 4.57
607 678 1.612442 AGGGGTAGGATGTGCGTGT 60.612 57.895 0.00 0.00 0.00 4.49
612 683 2.363038 GGGTAGGATGTGCGTGTATACA 59.637 50.000 0.08 0.08 0.00 2.29
620 691 5.348724 GGATGTGCGTGTATACATTCATAGG 59.651 44.000 9.18 0.00 37.63 2.57
628 699 7.378966 CGTGTATACATTCATAGGGATGAGTT 58.621 38.462 9.18 0.00 43.03 3.01
635 706 7.577303 ACATTCATAGGGATGAGTTTATGTGT 58.423 34.615 1.86 0.00 43.03 3.72
636 707 7.500227 ACATTCATAGGGATGAGTTTATGTGTG 59.500 37.037 1.86 0.00 43.03 3.82
669 740 2.894902 TCTGCGTTGTACTGTGTTCAA 58.105 42.857 0.00 0.00 0.00 2.69
674 745 5.743467 TGCGTTGTACTGTGTTCAAAATAG 58.257 37.500 0.00 0.00 0.00 1.73
737 808 2.433436 GCTTTGGTGTTATCCTCCGTT 58.567 47.619 0.00 0.00 0.00 4.44
758 829 8.032451 TCCGTTTTGGAAGAAAAATAATGATCC 58.968 33.333 0.00 0.00 46.38 3.36
790 861 1.068055 GTTCGTGTCCGTGGACTGTAT 60.068 52.381 19.17 0.00 44.80 2.29
828 899 3.303857 CCGTATTCCTACTACTGCTCACG 60.304 52.174 0.00 0.00 0.00 4.35
829 900 2.873133 ATTCCTACTACTGCTCACGC 57.127 50.000 0.00 0.00 0.00 5.34
830 901 0.450583 TTCCTACTACTGCTCACGCG 59.549 55.000 3.53 3.53 39.65 6.01
831 902 1.586564 CCTACTACTGCTCACGCGC 60.587 63.158 5.73 0.00 39.65 6.86
874 946 3.626930 ACCTGGCAAAATATAGGCGAAA 58.373 40.909 0.00 0.00 33.57 3.46
876 948 4.142249 ACCTGGCAAAATATAGGCGAAAAC 60.142 41.667 0.00 0.00 33.57 2.43
882 954 6.856426 GGCAAAATATAGGCGAAAACAGATAC 59.144 38.462 0.00 0.00 0.00 2.24
923 1009 0.733150 GCCGCCTTAAAAATCGCTCT 59.267 50.000 0.00 0.00 0.00 4.09
945 1031 1.247567 CGGTTCACTCCAAAGCCATT 58.752 50.000 0.00 0.00 0.00 3.16
946 1032 1.200020 CGGTTCACTCCAAAGCCATTC 59.800 52.381 0.00 0.00 0.00 2.67
994 1089 3.994165 AGCCACTTGGATCAGCAAT 57.006 47.368 0.00 0.00 37.39 3.56
995 1090 2.226962 AGCCACTTGGATCAGCAATT 57.773 45.000 0.00 0.00 37.39 2.32
996 1091 2.097825 AGCCACTTGGATCAGCAATTC 58.902 47.619 0.00 0.00 37.39 2.17
997 1092 1.820519 GCCACTTGGATCAGCAATTCA 59.179 47.619 0.00 0.00 37.39 2.57
998 1093 2.159282 GCCACTTGGATCAGCAATTCAG 60.159 50.000 0.00 0.00 37.39 3.02
1496 1591 4.816984 ACGGGCGATCGAGGAGGT 62.817 66.667 21.57 5.60 0.00 3.85
1949 2045 0.462225 TCGTTTTGCCTGGTCAACGA 60.462 50.000 19.24 19.24 46.46 3.85
1982 2078 0.693049 AAGCTTTGACCGTGATCCCT 59.307 50.000 0.00 0.00 0.00 4.20
1995 2091 3.756117 GTGATCCCTTTCTGTTTGGTCT 58.244 45.455 0.00 0.00 0.00 3.85
2013 2109 1.155889 CTACATGTGCGTTCTGCCAA 58.844 50.000 9.11 0.00 45.60 4.52
2017 2113 0.523072 ATGTGCGTTCTGCCAATGTC 59.477 50.000 0.00 0.00 45.60 3.06
2018 2114 0.817229 TGTGCGTTCTGCCAATGTCA 60.817 50.000 0.00 0.00 45.60 3.58
2019 2115 0.310543 GTGCGTTCTGCCAATGTCAA 59.689 50.000 0.00 0.00 45.60 3.18
2021 2117 1.612950 TGCGTTCTGCCAATGTCAAAT 59.387 42.857 0.00 0.00 45.60 2.32
2024 2120 3.119849 GCGTTCTGCCAATGTCAAATACT 60.120 43.478 0.00 0.00 37.76 2.12
2025 2121 4.094294 GCGTTCTGCCAATGTCAAATACTA 59.906 41.667 0.00 0.00 37.76 1.82
2045 2143 6.579666 ACTATGTGGTAACTTGTACGAAGA 57.420 37.500 10.71 0.00 37.61 2.87
2090 2188 1.518572 GCACAAGCTCATGCCATGC 60.519 57.895 10.38 0.00 40.80 4.06
2138 2237 9.888878 CTATGTGTAATGCATTATTCTGGAAAG 57.111 33.333 21.52 8.84 0.00 2.62
2151 2250 2.105134 TCTGGAAAGTGGAGGCGTAAAA 59.895 45.455 0.00 0.00 0.00 1.52
2158 2257 1.128809 TGGAGGCGTAAAAGGGGTGA 61.129 55.000 0.00 0.00 0.00 4.02
2177 2276 5.600696 GGTGACCAAATTCACTGTTTTGAT 58.399 37.500 0.00 0.00 44.63 2.57
2181 2280 7.439056 GTGACCAAATTCACTGTTTTGATCATT 59.561 33.333 4.33 0.00 37.61 2.57
2210 2309 8.577296 TCATTAGTTTAGGACGATCTTATCCTG 58.423 37.037 16.42 3.01 45.30 3.86
2222 2321 5.163622 CGATCTTATCCTGTGTGCCAAAAAT 60.164 40.000 0.00 0.00 0.00 1.82
2241 2340 9.646427 CCAAAAATTTCGGATATGAACCTTTTA 57.354 29.630 1.15 0.00 29.62 1.52
2254 2353 1.273327 ACCTTTTACTACCGTCACCCG 59.727 52.381 0.00 0.00 0.00 5.28
2255 2354 1.545582 CCTTTTACTACCGTCACCCGA 59.454 52.381 0.00 0.00 39.56 5.14
2297 2397 1.549170 CCTACTGCCACGGTCTTTAGT 59.451 52.381 0.00 0.00 0.00 2.24
2304 2404 2.667473 CACGGTCTTTAGTGGTAGGG 57.333 55.000 0.00 0.00 34.93 3.53
2305 2405 1.897802 CACGGTCTTTAGTGGTAGGGT 59.102 52.381 0.00 0.00 34.93 4.34
2306 2406 2.094338 CACGGTCTTTAGTGGTAGGGTC 60.094 54.545 0.00 0.00 34.93 4.46
2338 2438 2.795973 CGGCGTCGTCATGGACTA 59.204 61.111 0.00 0.00 34.75 2.59
2341 2441 1.002142 CGGCGTCGTCATGGACTAATA 60.002 52.381 0.00 0.00 34.75 0.98
2343 2443 2.793232 GGCGTCGTCATGGACTAATAAC 59.207 50.000 0.00 0.00 34.75 1.89
2346 2446 3.481028 CGTCGTCATGGACTAATAACGTG 59.519 47.826 0.00 0.00 34.75 4.49
2355 2455 3.930848 GGACTAATAACGTGGACAAGTGG 59.069 47.826 0.00 0.00 0.00 4.00
2359 2459 2.443887 TAACGTGGACAAGTGGCTAC 57.556 50.000 0.00 0.00 0.00 3.58
2361 2461 1.369692 CGTGGACAAGTGGCTACCA 59.630 57.895 0.00 0.00 29.75 3.25
2370 2470 2.200373 AGTGGCTACCATCACAAACC 57.800 50.000 0.00 0.00 35.28 3.27
2372 2472 2.084546 GTGGCTACCATCACAAACCTC 58.915 52.381 0.00 0.00 35.28 3.85
2376 2476 0.687920 TACCATCACAAACCTCGGCA 59.312 50.000 0.00 0.00 0.00 5.69
2380 2480 2.632377 CATCACAAACCTCGGCAGTAT 58.368 47.619 0.00 0.00 0.00 2.12
2384 2484 1.073284 ACAAACCTCGGCAGTATGGTT 59.927 47.619 6.06 6.06 43.73 3.67
2386 2486 3.244630 ACAAACCTCGGCAGTATGGTTTA 60.245 43.478 17.46 0.00 46.98 2.01
2387 2487 2.981859 ACCTCGGCAGTATGGTTTAG 57.018 50.000 0.00 0.00 35.86 1.85
2388 2488 2.463752 ACCTCGGCAGTATGGTTTAGA 58.536 47.619 0.00 0.00 35.86 2.10
2389 2489 2.431057 ACCTCGGCAGTATGGTTTAGAG 59.569 50.000 0.00 0.00 35.86 2.43
2390 2490 2.474816 CTCGGCAGTATGGTTTAGAGC 58.525 52.381 0.00 0.00 35.86 4.09
2391 2491 1.828595 TCGGCAGTATGGTTTAGAGCA 59.171 47.619 0.00 0.00 35.86 4.26
2392 2492 2.235155 TCGGCAGTATGGTTTAGAGCAA 59.765 45.455 0.00 0.00 36.76 3.91
2393 2493 2.351726 CGGCAGTATGGTTTAGAGCAAC 59.648 50.000 0.00 0.00 36.76 4.17
2394 2494 3.610911 GGCAGTATGGTTTAGAGCAACT 58.389 45.455 0.00 0.00 36.76 3.16
2395 2495 3.623510 GGCAGTATGGTTTAGAGCAACTC 59.376 47.826 0.00 0.00 36.76 3.01
2396 2496 3.623510 GCAGTATGGTTTAGAGCAACTCC 59.376 47.826 0.00 0.00 36.76 3.85
2397 2497 4.832248 CAGTATGGTTTAGAGCAACTCCA 58.168 43.478 0.00 0.00 36.76 3.86
2398 2498 5.245531 CAGTATGGTTTAGAGCAACTCCAA 58.754 41.667 0.00 0.00 36.76 3.53
2399 2499 5.122396 CAGTATGGTTTAGAGCAACTCCAAC 59.878 44.000 0.00 0.00 36.76 3.77
2400 2500 2.489971 TGGTTTAGAGCAACTCCAACG 58.510 47.619 0.00 0.00 29.80 4.10
2401 2501 1.197036 GGTTTAGAGCAACTCCAACGC 59.803 52.381 0.00 0.00 29.80 4.84
2402 2502 1.136336 GTTTAGAGCAACTCCAACGCG 60.136 52.381 3.53 3.53 0.00 6.01
2403 2503 1.289109 TTAGAGCAACTCCAACGCGC 61.289 55.000 5.73 0.00 0.00 6.86
2404 2504 4.090057 GAGCAACTCCAACGCGCC 62.090 66.667 5.73 0.00 0.00 6.53
2405 2505 4.927782 AGCAACTCCAACGCGCCA 62.928 61.111 5.73 0.00 0.00 5.69
2406 2506 3.959975 GCAACTCCAACGCGCCAA 61.960 61.111 5.73 0.00 0.00 4.52
2407 2507 2.953821 CAACTCCAACGCGCCAAT 59.046 55.556 5.73 0.00 0.00 3.16
2408 2508 1.285641 CAACTCCAACGCGCCAATT 59.714 52.632 5.73 0.00 0.00 2.32
2409 2509 0.729140 CAACTCCAACGCGCCAATTC 60.729 55.000 5.73 0.00 0.00 2.17
2410 2510 1.169661 AACTCCAACGCGCCAATTCA 61.170 50.000 5.73 0.00 0.00 2.57
2411 2511 0.960364 ACTCCAACGCGCCAATTCAT 60.960 50.000 5.73 0.00 0.00 2.57
2412 2512 0.171007 CTCCAACGCGCCAATTCATT 59.829 50.000 5.73 0.00 0.00 2.57
2413 2513 0.600557 TCCAACGCGCCAATTCATTT 59.399 45.000 5.73 0.00 0.00 2.32
2414 2514 1.000283 TCCAACGCGCCAATTCATTTT 60.000 42.857 5.73 0.00 0.00 1.82
2415 2515 1.126479 CCAACGCGCCAATTCATTTTG 59.874 47.619 5.73 0.00 0.00 2.44
2416 2516 1.791785 CAACGCGCCAATTCATTTTGT 59.208 42.857 5.73 0.00 0.00 2.83
2417 2517 2.147436 ACGCGCCAATTCATTTTGTT 57.853 40.000 5.73 0.00 0.00 2.83
2418 2518 2.058057 ACGCGCCAATTCATTTTGTTC 58.942 42.857 5.73 0.00 0.00 3.18
2419 2519 1.057566 CGCGCCAATTCATTTTGTTCG 59.942 47.619 0.00 0.00 0.00 3.95
2420 2520 1.201801 GCGCCAATTCATTTTGTTCGC 60.202 47.619 0.00 0.00 38.50 4.70
2421 2521 1.057566 CGCCAATTCATTTTGTTCGCG 59.942 47.619 0.00 0.00 31.81 5.87
2422 2522 1.201801 GCCAATTCATTTTGTTCGCGC 60.202 47.619 0.00 0.00 0.00 6.86
2423 2523 1.057566 CCAATTCATTTTGTTCGCGCG 59.942 47.619 26.76 26.76 0.00 6.86
2424 2524 0.707822 AATTCATTTTGTTCGCGCGC 59.292 45.000 27.95 23.91 0.00 6.86
2425 2525 1.395068 ATTCATTTTGTTCGCGCGCG 61.395 50.000 44.84 44.84 41.35 6.86
2426 2526 2.703425 TTCATTTTGTTCGCGCGCGT 62.703 50.000 46.54 27.68 40.74 6.01
2427 2527 2.498887 ATTTTGTTCGCGCGCGTC 60.499 55.556 46.54 37.77 40.74 5.19
2428 2528 3.921606 ATTTTGTTCGCGCGCGTCC 62.922 57.895 46.54 36.68 40.74 4.79
2432 2532 4.439472 GTTCGCGCGCGTCCATTT 62.439 61.111 46.54 0.00 40.74 2.32
2433 2533 4.142047 TTCGCGCGCGTCCATTTC 62.142 61.111 46.54 11.65 40.74 2.17
2437 2537 3.784412 CGCGCGTCCATTTCGGTT 61.784 61.111 24.19 0.00 35.57 4.44
2438 2538 2.202298 GCGCGTCCATTTCGGTTG 60.202 61.111 8.43 0.00 35.57 3.77
2439 2539 2.202298 CGCGTCCATTTCGGTTGC 60.202 61.111 0.00 0.00 35.57 4.17
2440 2540 2.178273 GCGTCCATTTCGGTTGCC 59.822 61.111 0.00 0.00 35.57 4.52
2451 2551 2.975799 GGTTGCCGCGGACAGAAA 60.976 61.111 33.48 11.50 0.00 2.52
2452 2552 2.548295 GGTTGCCGCGGACAGAAAA 61.548 57.895 33.48 8.48 0.00 2.29
2453 2553 1.082104 GTTGCCGCGGACAGAAAAG 60.082 57.895 33.48 0.00 0.00 2.27
2454 2554 1.525077 TTGCCGCGGACAGAAAAGT 60.525 52.632 33.48 0.00 0.00 2.66
2455 2555 1.503818 TTGCCGCGGACAGAAAAGTC 61.504 55.000 33.48 7.30 37.80 3.01
2456 2556 3.011760 GCCGCGGACAGAAAAGTCG 62.012 63.158 33.48 0.00 39.42 4.18
2457 2557 2.380410 CCGCGGACAGAAAAGTCGG 61.380 63.158 24.07 0.00 39.42 4.79
2459 2559 3.562635 CGGACAGAAAAGTCGGCC 58.437 61.111 0.00 0.00 39.42 6.13
2460 2560 2.033194 CGGACAGAAAAGTCGGCCC 61.033 63.158 0.00 0.00 39.42 5.80
2461 2561 1.072505 GGACAGAAAAGTCGGCCCA 59.927 57.895 0.00 0.00 39.42 5.36
2462 2562 0.536460 GGACAGAAAAGTCGGCCCAA 60.536 55.000 0.00 0.00 39.42 4.12
2463 2563 0.591659 GACAGAAAAGTCGGCCCAAC 59.408 55.000 0.00 0.00 0.00 3.77
2464 2564 1.164041 ACAGAAAAGTCGGCCCAACG 61.164 55.000 0.00 0.00 0.00 4.10
2465 2565 1.147600 AGAAAAGTCGGCCCAACGT 59.852 52.632 0.00 0.00 34.94 3.99
2466 2566 1.164041 AGAAAAGTCGGCCCAACGTG 61.164 55.000 0.00 0.00 34.94 4.49
2467 2567 2.726850 GAAAAGTCGGCCCAACGTGC 62.727 60.000 0.00 0.00 34.94 5.34
2474 2574 3.532155 GCCCAACGTGCCAACCAA 61.532 61.111 0.00 0.00 0.00 3.67
2475 2575 3.082579 GCCCAACGTGCCAACCAAA 62.083 57.895 0.00 0.00 0.00 3.28
2476 2576 1.517832 CCCAACGTGCCAACCAAAA 59.482 52.632 0.00 0.00 0.00 2.44
2477 2577 0.808060 CCCAACGTGCCAACCAAAAC 60.808 55.000 0.00 0.00 0.00 2.43
2478 2578 1.142778 CCAACGTGCCAACCAAAACG 61.143 55.000 0.00 0.00 41.64 3.60
2479 2579 1.139947 AACGTGCCAACCAAAACGG 59.860 52.632 0.00 0.00 40.25 4.44
2480 2580 2.656973 CGTGCCAACCAAAACGGC 60.657 61.111 0.00 0.00 46.43 5.68
2481 2581 2.279851 GTGCCAACCAAAACGGCC 60.280 61.111 0.00 0.00 45.63 6.13
2482 2582 2.759973 TGCCAACCAAAACGGCCA 60.760 55.556 2.24 0.00 45.63 5.36
2483 2583 2.279851 GCCAACCAAAACGGCCAC 60.280 61.111 2.24 0.00 40.07 5.01
2485 2585 2.656973 CAACCAAAACGGCCACGC 60.657 61.111 2.24 0.00 46.04 5.34
2486 2586 4.258932 AACCAAAACGGCCACGCG 62.259 61.111 3.53 3.53 46.04 6.01
2488 2588 4.676586 CCAAAACGGCCACGCGTC 62.677 66.667 9.86 0.00 46.04 5.19
2489 2589 3.645975 CAAAACGGCCACGCGTCT 61.646 61.111 9.86 0.00 46.04 4.18
2490 2590 3.645975 AAAACGGCCACGCGTCTG 61.646 61.111 9.86 7.07 46.04 3.51
2495 2595 3.660111 GGCCACGCGTCTGCTTTT 61.660 61.111 24.42 0.00 39.65 2.27
2496 2596 2.127232 GCCACGCGTCTGCTTTTC 60.127 61.111 19.91 0.00 39.65 2.29
2497 2597 2.170985 CCACGCGTCTGCTTTTCG 59.829 61.111 9.86 0.00 39.65 3.46
2498 2598 2.594962 CCACGCGTCTGCTTTTCGT 61.595 57.895 9.86 0.00 39.65 3.85
2499 2599 1.154836 CACGCGTCTGCTTTTCGTC 60.155 57.895 9.86 0.00 39.65 4.20
2500 2600 2.308039 ACGCGTCTGCTTTTCGTCC 61.308 57.895 5.58 0.00 39.65 4.79
2501 2601 2.470286 GCGTCTGCTTTTCGTCCG 59.530 61.111 0.00 0.00 38.39 4.79
2502 2602 2.470286 CGTCTGCTTTTCGTCCGC 59.530 61.111 0.00 0.00 0.00 5.54
2503 2603 2.861006 GTCTGCTTTTCGTCCGCC 59.139 61.111 0.00 0.00 0.00 6.13
2504 2604 1.668151 GTCTGCTTTTCGTCCGCCT 60.668 57.895 0.00 0.00 0.00 5.52
2505 2605 1.667830 TCTGCTTTTCGTCCGCCTG 60.668 57.895 0.00 0.00 0.00 4.85
2506 2606 3.314388 CTGCTTTTCGTCCGCCTGC 62.314 63.158 0.00 0.00 0.00 4.85
2507 2607 4.103103 GCTTTTCGTCCGCCTGCC 62.103 66.667 0.00 0.00 0.00 4.85
2508 2608 2.668212 CTTTTCGTCCGCCTGCCA 60.668 61.111 0.00 0.00 0.00 4.92
2509 2609 2.203224 TTTTCGTCCGCCTGCCAA 60.203 55.556 0.00 0.00 0.00 4.52
2510 2610 2.458006 CTTTTCGTCCGCCTGCCAAC 62.458 60.000 0.00 0.00 0.00 3.77
2514 2614 4.740822 GTCCGCCTGCCAACCCAT 62.741 66.667 0.00 0.00 0.00 4.00
2515 2615 3.978193 TCCGCCTGCCAACCCATT 61.978 61.111 0.00 0.00 0.00 3.16
2516 2616 3.451894 CCGCCTGCCAACCCATTC 61.452 66.667 0.00 0.00 0.00 2.67
2517 2617 3.451894 CGCCTGCCAACCCATTCC 61.452 66.667 0.00 0.00 0.00 3.01
2518 2618 3.076916 GCCTGCCAACCCATTCCC 61.077 66.667 0.00 0.00 0.00 3.97
2519 2619 2.755469 CCTGCCAACCCATTCCCG 60.755 66.667 0.00 0.00 0.00 5.14
2520 2620 2.755469 CTGCCAACCCATTCCCGG 60.755 66.667 0.00 0.00 0.00 5.73
2524 2624 4.374584 CAACCCATTCCCGGCCCA 62.375 66.667 0.00 0.00 0.00 5.36
2525 2625 3.355344 AACCCATTCCCGGCCCAT 61.355 61.111 0.00 0.00 0.00 4.00
2526 2626 2.942200 AACCCATTCCCGGCCCATT 61.942 57.895 0.00 0.00 0.00 3.16
2527 2627 2.042025 CCCATTCCCGGCCCATTT 60.042 61.111 0.00 0.00 0.00 2.32
2528 2628 1.688884 CCCATTCCCGGCCCATTTT 60.689 57.895 0.00 0.00 0.00 1.82
2529 2629 1.271127 CCCATTCCCGGCCCATTTTT 61.271 55.000 0.00 0.00 0.00 1.94
2530 2630 0.107752 CCATTCCCGGCCCATTTTTG 60.108 55.000 0.00 0.00 0.00 2.44
2531 2631 0.901124 CATTCCCGGCCCATTTTTGA 59.099 50.000 0.00 0.00 0.00 2.69
2532 2632 1.134729 CATTCCCGGCCCATTTTTGAG 60.135 52.381 0.00 0.00 0.00 3.02
2533 2633 1.540435 TTCCCGGCCCATTTTTGAGC 61.540 55.000 0.00 0.00 0.00 4.26
2534 2634 2.578664 CCGGCCCATTTTTGAGCC 59.421 61.111 0.00 0.00 42.18 4.70
2535 2635 1.984026 CCGGCCCATTTTTGAGCCT 60.984 57.895 0.00 0.00 43.48 4.58
2536 2636 1.512694 CGGCCCATTTTTGAGCCTC 59.487 57.895 0.00 0.00 43.48 4.70
2537 2637 1.250154 CGGCCCATTTTTGAGCCTCA 61.250 55.000 0.00 0.00 43.48 3.86
2538 2638 1.197812 GGCCCATTTTTGAGCCTCAT 58.802 50.000 0.00 0.00 42.34 2.90
2539 2639 1.134610 GGCCCATTTTTGAGCCTCATG 60.135 52.381 0.00 0.00 42.34 3.07
2540 2640 1.551883 GCCCATTTTTGAGCCTCATGT 59.448 47.619 0.00 0.00 0.00 3.21
2541 2641 2.675889 GCCCATTTTTGAGCCTCATGTG 60.676 50.000 0.00 0.00 0.00 3.21
2542 2642 2.613691 CCATTTTTGAGCCTCATGTGC 58.386 47.619 0.00 0.00 0.00 4.57
2543 2643 2.256174 CATTTTTGAGCCTCATGTGCG 58.744 47.619 0.00 0.00 0.00 5.34
2544 2644 1.317613 TTTTTGAGCCTCATGTGCGT 58.682 45.000 0.00 0.00 0.00 5.24
2545 2645 0.874390 TTTTGAGCCTCATGTGCGTC 59.126 50.000 0.00 0.00 0.00 5.19
2546 2646 1.291184 TTTGAGCCTCATGTGCGTCG 61.291 55.000 0.00 0.00 0.00 5.12
2547 2647 2.887568 GAGCCTCATGTGCGTCGG 60.888 66.667 0.00 0.00 0.00 4.79
2564 2664 2.399856 GGCACGGACACAAAACAGA 58.600 52.632 0.00 0.00 0.00 3.41
2565 2665 0.028902 GGCACGGACACAAAACAGAC 59.971 55.000 0.00 0.00 0.00 3.51
2566 2666 0.315869 GCACGGACACAAAACAGACG 60.316 55.000 0.00 0.00 0.00 4.18
2567 2667 0.315869 CACGGACACAAAACAGACGC 60.316 55.000 0.00 0.00 0.00 5.19
2568 2668 1.083657 CGGACACAAAACAGACGCG 60.084 57.895 3.53 3.53 0.00 6.01
2569 2669 1.758319 CGGACACAAAACAGACGCGT 61.758 55.000 13.85 13.85 0.00 6.01
2570 2670 0.315869 GGACACAAAACAGACGCGTG 60.316 55.000 20.70 5.63 0.00 5.34
2571 2671 0.648441 GACACAAAACAGACGCGTGA 59.352 50.000 20.70 0.00 0.00 4.35
2572 2672 0.372334 ACACAAAACAGACGCGTGAC 59.628 50.000 20.70 2.09 0.00 3.67
2585 2685 4.436998 GTGACGCGCCTGCCTACT 62.437 66.667 5.73 0.00 38.08 2.57
2586 2686 4.129737 TGACGCGCCTGCCTACTC 62.130 66.667 5.73 0.00 38.08 2.59
2587 2687 4.874977 GACGCGCCTGCCTACTCC 62.875 72.222 5.73 0.00 38.08 3.85
2614 2714 2.184322 CGCTAGTCGGTGGCACAT 59.816 61.111 20.82 4.57 44.52 3.21
2615 2715 1.447838 CGCTAGTCGGTGGCACATT 60.448 57.895 20.82 3.88 44.52 2.71
2616 2716 1.695893 CGCTAGTCGGTGGCACATTG 61.696 60.000 20.82 8.68 44.52 2.82
2617 2717 1.369091 GCTAGTCGGTGGCACATTGG 61.369 60.000 20.82 5.45 44.52 3.16
2618 2718 1.369091 CTAGTCGGTGGCACATTGGC 61.369 60.000 20.82 10.05 44.52 4.52
2626 2726 3.530067 GCACATTGGCCATCCTCC 58.470 61.111 6.09 0.00 0.00 4.30
2627 2727 2.129785 GCACATTGGCCATCCTCCC 61.130 63.158 6.09 0.00 0.00 4.30
2628 2728 1.456331 CACATTGGCCATCCTCCCC 60.456 63.158 6.09 0.00 0.00 4.81
2629 2729 2.199535 CATTGGCCATCCTCCCCC 59.800 66.667 6.09 0.00 0.00 5.40
2630 2730 2.287896 ATTGGCCATCCTCCCCCA 60.288 61.111 6.09 0.00 0.00 4.96
2631 2731 1.706195 ATTGGCCATCCTCCCCCAT 60.706 57.895 6.09 0.00 0.00 4.00
2632 2732 1.306454 ATTGGCCATCCTCCCCCATT 61.306 55.000 6.09 0.00 0.00 3.16
2633 2733 1.948403 TTGGCCATCCTCCCCCATTC 61.948 60.000 6.09 0.00 0.00 2.67
2634 2734 2.523016 GCCATCCTCCCCCATTCC 59.477 66.667 0.00 0.00 0.00 3.01
2635 2735 2.394506 GCCATCCTCCCCCATTCCA 61.395 63.158 0.00 0.00 0.00 3.53
2636 2736 1.948403 GCCATCCTCCCCCATTCCAA 61.948 60.000 0.00 0.00 0.00 3.53
2637 2737 0.106015 CCATCCTCCCCCATTCCAAC 60.106 60.000 0.00 0.00 0.00 3.77
2638 2738 0.630673 CATCCTCCCCCATTCCAACA 59.369 55.000 0.00 0.00 0.00 3.33
2639 2739 1.006998 CATCCTCCCCCATTCCAACAA 59.993 52.381 0.00 0.00 0.00 2.83
2640 2740 0.407918 TCCTCCCCCATTCCAACAAC 59.592 55.000 0.00 0.00 0.00 3.32
2641 2741 0.114168 CCTCCCCCATTCCAACAACA 59.886 55.000 0.00 0.00 0.00 3.33
2642 2742 1.482177 CCTCCCCCATTCCAACAACAA 60.482 52.381 0.00 0.00 0.00 2.83
2643 2743 2.324541 CTCCCCCATTCCAACAACAAA 58.675 47.619 0.00 0.00 0.00 2.83
2644 2744 2.037121 CTCCCCCATTCCAACAACAAAC 59.963 50.000 0.00 0.00 0.00 2.93
2645 2745 1.071542 CCCCCATTCCAACAACAAACC 59.928 52.381 0.00 0.00 0.00 3.27
2646 2746 1.071542 CCCCATTCCAACAACAAACCC 59.928 52.381 0.00 0.00 0.00 4.11
2647 2747 2.046292 CCCATTCCAACAACAAACCCT 58.954 47.619 0.00 0.00 0.00 4.34
2648 2748 2.037121 CCCATTCCAACAACAAACCCTC 59.963 50.000 0.00 0.00 0.00 4.30
2649 2749 2.288152 CCATTCCAACAACAAACCCTCG 60.288 50.000 0.00 0.00 0.00 4.63
2650 2750 0.741915 TTCCAACAACAAACCCTCGC 59.258 50.000 0.00 0.00 0.00 5.03
2651 2751 1.104577 TCCAACAACAAACCCTCGCC 61.105 55.000 0.00 0.00 0.00 5.54
2652 2752 1.362355 CAACAACAAACCCTCGCCC 59.638 57.895 0.00 0.00 0.00 6.13
2653 2753 2.190841 AACAACAAACCCTCGCCCG 61.191 57.895 0.00 0.00 0.00 6.13
2654 2754 4.038080 CAACAAACCCTCGCCCGC 62.038 66.667 0.00 0.00 0.00 6.13
2671 2771 3.691342 CCTCCTTCGTCGCCACCA 61.691 66.667 0.00 0.00 0.00 4.17
2672 2772 2.432628 CTCCTTCGTCGCCACCAC 60.433 66.667 0.00 0.00 0.00 4.16
2673 2773 3.934391 CTCCTTCGTCGCCACCACC 62.934 68.421 0.00 0.00 0.00 4.61
2685 2785 4.986708 ACCACCGCCGCCCATTTT 62.987 61.111 0.00 0.00 0.00 1.82
2686 2786 3.690280 CCACCGCCGCCCATTTTT 61.690 61.111 0.00 0.00 0.00 1.94
2687 2787 2.126110 CACCGCCGCCCATTTTTC 60.126 61.111 0.00 0.00 0.00 2.29
2688 2788 3.378602 ACCGCCGCCCATTTTTCC 61.379 61.111 0.00 0.00 0.00 3.13
2689 2789 4.490575 CCGCCGCCCATTTTTCCG 62.491 66.667 0.00 0.00 0.00 4.30
2690 2790 4.490575 CGCCGCCCATTTTTCCGG 62.491 66.667 0.00 0.00 43.38 5.14
2691 2791 3.378602 GCCGCCCATTTTTCCGGT 61.379 61.111 0.00 0.00 42.54 5.28
2692 2792 2.571231 CCGCCCATTTTTCCGGTG 59.429 61.111 0.00 0.00 36.18 4.94
2693 2793 2.126110 CGCCCATTTTTCCGGTGC 60.126 61.111 0.00 0.00 0.00 5.01
2694 2794 2.264480 GCCCATTTTTCCGGTGCC 59.736 61.111 0.00 0.00 0.00 5.01
2695 2795 2.282783 GCCCATTTTTCCGGTGCCT 61.283 57.895 0.00 0.00 0.00 4.75
2696 2796 1.890174 CCCATTTTTCCGGTGCCTC 59.110 57.895 0.00 0.00 0.00 4.70
2697 2797 0.611896 CCCATTTTTCCGGTGCCTCT 60.612 55.000 0.00 0.00 0.00 3.69
2698 2798 0.527565 CCATTTTTCCGGTGCCTCTG 59.472 55.000 0.00 0.00 0.00 3.35
2699 2799 0.109132 CATTTTTCCGGTGCCTCTGC 60.109 55.000 0.00 0.00 38.26 4.26
2700 2800 1.250840 ATTTTTCCGGTGCCTCTGCC 61.251 55.000 0.00 0.00 36.33 4.85
2701 2801 2.632602 TTTTTCCGGTGCCTCTGCCA 62.633 55.000 0.00 0.00 36.33 4.92
2702 2802 3.551496 TTTCCGGTGCCTCTGCCAG 62.551 63.158 0.00 0.00 36.33 4.85
2706 2806 4.341783 GGTGCCTCTGCCAGCTGT 62.342 66.667 13.81 0.00 36.33 4.40
2707 2807 2.745492 GTGCCTCTGCCAGCTGTC 60.745 66.667 13.81 0.00 36.33 3.51
2708 2808 4.383861 TGCCTCTGCCAGCTGTCG 62.384 66.667 13.81 0.00 36.33 4.35
2710 2810 3.699894 CCTCTGCCAGCTGTCGGT 61.700 66.667 13.81 0.00 0.00 4.69
2711 2811 2.433838 CTCTGCCAGCTGTCGGTG 60.434 66.667 13.81 1.54 38.35 4.94
2712 2812 4.687215 TCTGCCAGCTGTCGGTGC 62.687 66.667 13.81 8.99 37.32 5.01
2728 2828 4.849310 GCCGCCACATCGCCCTTA 62.849 66.667 0.00 0.00 0.00 2.69
2729 2829 2.895372 CCGCCACATCGCCCTTAC 60.895 66.667 0.00 0.00 0.00 2.34
2730 2830 2.125310 CGCCACATCGCCCTTACA 60.125 61.111 0.00 0.00 0.00 2.41
2731 2831 1.743623 CGCCACATCGCCCTTACAA 60.744 57.895 0.00 0.00 0.00 2.41
2732 2832 1.800681 GCCACATCGCCCTTACAAC 59.199 57.895 0.00 0.00 0.00 3.32
2733 2833 1.977594 GCCACATCGCCCTTACAACG 61.978 60.000 0.00 0.00 0.00 4.10
2734 2834 1.423845 CACATCGCCCTTACAACGC 59.576 57.895 0.00 0.00 0.00 4.84
2735 2835 1.743995 ACATCGCCCTTACAACGCC 60.744 57.895 0.00 0.00 0.00 5.68
2736 2836 2.510691 ATCGCCCTTACAACGCCG 60.511 61.111 0.00 0.00 0.00 6.46
2740 2840 3.428282 CCCTTACAACGCCGCCAC 61.428 66.667 0.00 0.00 0.00 5.01
2741 2841 3.428282 CCTTACAACGCCGCCACC 61.428 66.667 0.00 0.00 0.00 4.61
2742 2842 2.358247 CTTACAACGCCGCCACCT 60.358 61.111 0.00 0.00 0.00 4.00
2743 2843 2.357760 TTACAACGCCGCCACCTC 60.358 61.111 0.00 0.00 0.00 3.85
2744 2844 3.887335 TTACAACGCCGCCACCTCC 62.887 63.158 0.00 0.00 0.00 4.30
2751 2851 4.838152 CCGCCACCTCCCATGTCG 62.838 72.222 0.00 0.00 0.00 4.35
2754 2854 4.838152 CCACCTCCCATGTCGCCG 62.838 72.222 0.00 0.00 0.00 6.46
2762 2862 3.490759 CATGTCGCCGCCACTGTC 61.491 66.667 0.00 0.00 0.00 3.51
2768 2868 3.414700 GCCGCCACTGTCGTCTTG 61.415 66.667 0.00 0.00 0.00 3.02
2769 2869 3.414700 CCGCCACTGTCGTCTTGC 61.415 66.667 0.00 0.00 0.00 4.01
2770 2870 3.414700 CGCCACTGTCGTCTTGCC 61.415 66.667 0.00 0.00 0.00 4.52
2771 2871 3.414700 GCCACTGTCGTCTTGCCG 61.415 66.667 0.00 0.00 0.00 5.69
2772 2872 3.414700 CCACTGTCGTCTTGCCGC 61.415 66.667 0.00 0.00 0.00 6.53
2773 2873 2.356313 CACTGTCGTCTTGCCGCT 60.356 61.111 0.00 0.00 0.00 5.52
2774 2874 1.080772 CACTGTCGTCTTGCCGCTA 60.081 57.895 0.00 0.00 0.00 4.26
2775 2875 1.073216 CACTGTCGTCTTGCCGCTAG 61.073 60.000 0.00 0.00 0.00 3.42
2776 2876 1.517257 CTGTCGTCTTGCCGCTAGG 60.517 63.158 1.88 0.00 41.62 3.02
2777 2877 2.202756 GTCGTCTTGCCGCTAGGG 60.203 66.667 0.00 0.00 38.20 3.53
2778 2878 2.361992 TCGTCTTGCCGCTAGGGA 60.362 61.111 8.65 0.00 38.47 4.20
2779 2879 1.756950 TCGTCTTGCCGCTAGGGAT 60.757 57.895 8.65 0.00 37.83 3.85
2780 2880 1.300233 CGTCTTGCCGCTAGGGATC 60.300 63.158 8.65 0.33 37.83 3.36
2781 2881 1.069935 GTCTTGCCGCTAGGGATCC 59.930 63.158 8.65 1.92 37.83 3.36
2782 2882 2.029666 CTTGCCGCTAGGGATCCG 59.970 66.667 8.65 0.00 37.83 4.18
2783 2883 2.443203 TTGCCGCTAGGGATCCGA 60.443 61.111 8.65 0.00 37.83 4.55
2784 2884 2.028125 CTTGCCGCTAGGGATCCGAA 62.028 60.000 8.65 0.00 37.83 4.30
2785 2885 1.618876 TTGCCGCTAGGGATCCGAAA 61.619 55.000 8.65 0.00 37.83 3.46
2786 2886 1.301009 GCCGCTAGGGATCCGAAAG 60.301 63.158 8.65 3.97 38.47 2.62
2787 2887 1.301009 CCGCTAGGGATCCGAAAGC 60.301 63.158 17.36 17.36 38.47 3.51
2788 2888 1.742768 CGCTAGGGATCCGAAAGCT 59.257 57.895 22.07 10.36 30.42 3.74
2789 2889 0.105039 CGCTAGGGATCCGAAAGCTT 59.895 55.000 22.07 0.00 30.42 3.74
2790 2890 1.870167 CGCTAGGGATCCGAAAGCTTC 60.870 57.143 22.07 1.96 30.42 3.86
2791 2891 1.541452 GCTAGGGATCCGAAAGCTTCC 60.541 57.143 19.15 0.00 0.00 3.46
2792 2892 1.070914 CTAGGGATCCGAAAGCTTCCC 59.929 57.143 10.49 10.49 45.83 3.97
2793 2893 1.607612 GGGATCCGAAAGCTTCCCA 59.392 57.895 13.16 0.00 45.20 4.37
2794 2894 0.748367 GGGATCCGAAAGCTTCCCAC 60.748 60.000 13.16 0.00 45.20 4.61
2795 2895 0.748367 GGATCCGAAAGCTTCCCACC 60.748 60.000 0.00 0.00 0.00 4.61
2796 2896 0.748367 GATCCGAAAGCTTCCCACCC 60.748 60.000 0.00 0.00 0.00 4.61
2797 2897 2.211468 ATCCGAAAGCTTCCCACCCC 62.211 60.000 0.00 0.00 0.00 4.95
2798 2898 2.361230 CGAAAGCTTCCCACCCCC 60.361 66.667 0.00 0.00 0.00 5.40
2799 2899 2.851045 GAAAGCTTCCCACCCCCA 59.149 61.111 0.00 0.00 0.00 4.96
2800 2900 1.606601 GAAAGCTTCCCACCCCCAC 60.607 63.158 0.00 0.00 0.00 4.61
2801 2901 2.081585 GAAAGCTTCCCACCCCCACT 62.082 60.000 0.00 0.00 0.00 4.00
2802 2902 2.081585 AAAGCTTCCCACCCCCACTC 62.082 60.000 0.00 0.00 0.00 3.51
2803 2903 4.048470 GCTTCCCACCCCCACTCC 62.048 72.222 0.00 0.00 0.00 3.85
2804 2904 3.339093 CTTCCCACCCCCACTCCC 61.339 72.222 0.00 0.00 0.00 4.30
2812 2912 3.009115 CCCCACTCCCCGACACAT 61.009 66.667 0.00 0.00 0.00 3.21
2813 2913 2.584608 CCCACTCCCCGACACATC 59.415 66.667 0.00 0.00 0.00 3.06
2814 2914 2.584608 CCACTCCCCGACACATCC 59.415 66.667 0.00 0.00 0.00 3.51
2815 2915 2.184322 CACTCCCCGACACATCCG 59.816 66.667 0.00 0.00 0.00 4.18
2816 2916 3.771160 ACTCCCCGACACATCCGC 61.771 66.667 0.00 0.00 0.00 5.54
2817 2917 4.873129 CTCCCCGACACATCCGCG 62.873 72.222 0.00 0.00 0.00 6.46
2821 2921 4.429212 CCGACACATCCGCGACCA 62.429 66.667 8.23 0.00 0.00 4.02
2822 2922 2.431771 CGACACATCCGCGACCAA 60.432 61.111 8.23 0.00 0.00 3.67
2823 2923 2.444624 CGACACATCCGCGACCAAG 61.445 63.158 8.23 0.00 0.00 3.61
2824 2924 1.080093 GACACATCCGCGACCAAGA 60.080 57.895 8.23 0.00 0.00 3.02
2825 2925 0.669318 GACACATCCGCGACCAAGAA 60.669 55.000 8.23 0.00 0.00 2.52
2826 2926 0.670546 ACACATCCGCGACCAAGAAG 60.671 55.000 8.23 0.00 0.00 2.85
2827 2927 1.741770 ACATCCGCGACCAAGAAGC 60.742 57.895 8.23 0.00 0.00 3.86
2828 2928 2.125106 ATCCGCGACCAAGAAGCC 60.125 61.111 8.23 0.00 0.00 4.35
2829 2929 2.954684 ATCCGCGACCAAGAAGCCA 61.955 57.895 8.23 0.00 0.00 4.75
2830 2930 3.423154 CCGCGACCAAGAAGCCAC 61.423 66.667 8.23 0.00 0.00 5.01
2831 2931 3.423154 CGCGACCAAGAAGCCACC 61.423 66.667 0.00 0.00 0.00 4.61
2832 2932 2.032681 GCGACCAAGAAGCCACCT 59.967 61.111 0.00 0.00 0.00 4.00
2833 2933 2.035442 GCGACCAAGAAGCCACCTC 61.035 63.158 0.00 0.00 0.00 3.85
2834 2934 1.738099 CGACCAAGAAGCCACCTCG 60.738 63.158 0.00 0.00 0.00 4.63
2835 2935 2.032681 ACCAAGAAGCCACCTCGC 59.967 61.111 0.00 0.00 0.00 5.03
2836 2936 2.747855 CCAAGAAGCCACCTCGCC 60.748 66.667 0.00 0.00 0.00 5.54
2837 2937 3.121030 CAAGAAGCCACCTCGCCG 61.121 66.667 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.463204 CATCCTCCACGTCAGCATCT 59.537 55.000 0.00 0.00 0.00 2.90
1 2 0.531532 CCATCCTCCACGTCAGCATC 60.532 60.000 0.00 0.00 0.00 3.91
2 3 0.977627 TCCATCCTCCACGTCAGCAT 60.978 55.000 0.00 0.00 0.00 3.79
3 4 1.191489 TTCCATCCTCCACGTCAGCA 61.191 55.000 0.00 0.00 0.00 4.41
4 5 0.741221 GTTCCATCCTCCACGTCAGC 60.741 60.000 0.00 0.00 0.00 4.26
5 6 0.898320 AGTTCCATCCTCCACGTCAG 59.102 55.000 0.00 0.00 0.00 3.51
6 7 0.895530 GAGTTCCATCCTCCACGTCA 59.104 55.000 0.00 0.00 0.00 4.35
36 37 3.263425 GGGTTCTATCTTGTGGTCTTCCA 59.737 47.826 0.00 0.00 42.05 3.53
37 38 3.263425 TGGGTTCTATCTTGTGGTCTTCC 59.737 47.826 0.00 0.00 0.00 3.46
50 51 2.644151 AGTTGGGGACTTGGGTTCTAT 58.356 47.619 0.00 0.00 33.92 1.98
51 52 2.127651 AGTTGGGGACTTGGGTTCTA 57.872 50.000 0.00 0.00 33.92 2.10
52 53 1.231963 AAGTTGGGGACTTGGGTTCT 58.768 50.000 0.00 0.00 46.66 3.01
65 85 3.313526 CACTGAACTGGTCTTCAAGTTGG 59.686 47.826 2.34 0.00 29.66 3.77
67 87 3.545703 CCACTGAACTGGTCTTCAAGTT 58.454 45.455 0.00 0.00 29.66 2.66
68 88 2.746472 GCCACTGAACTGGTCTTCAAGT 60.746 50.000 0.00 0.00 33.30 3.16
74 94 2.906389 TCAATAGCCACTGAACTGGTCT 59.094 45.455 0.00 0.00 33.30 3.85
84 104 2.365617 CAGGATACCGTCAATAGCCACT 59.634 50.000 0.00 0.00 30.06 4.00
88 108 3.963428 ATCCAGGATACCGTCAATAGC 57.037 47.619 0.00 0.00 37.17 2.97
105 125 1.076995 GGTGTGCACCCCCTAATCC 60.077 63.158 15.69 0.49 45.68 3.01
154 174 0.965866 TTTGGTTGTGCACGGGTTCA 60.966 50.000 13.13 3.32 0.00 3.18
156 176 0.681564 TCTTTGGTTGTGCACGGGTT 60.682 50.000 13.13 0.00 0.00 4.11
163 183 1.963515 AGTCCCATTCTTTGGTTGTGC 59.036 47.619 0.00 0.00 44.83 4.57
192 212 1.202582 CTTGAGTATATCGAGGGCCGG 59.797 57.143 0.00 0.00 35.96 6.13
193 213 2.638556 CTTGAGTATATCGAGGGCCG 57.361 55.000 0.00 0.00 35.96 6.13
213 233 3.003480 CCAAGTCTTCGAAGGATTCCAC 58.997 50.000 24.37 13.93 43.81 4.02
223 243 0.669619 TGTGTACGCCAAGTCTTCGA 59.330 50.000 3.51 0.00 0.00 3.71
225 245 2.683968 TGATGTGTACGCCAAGTCTTC 58.316 47.619 3.51 0.00 0.00 2.87
234 254 4.325204 TCAAATACGTCTTGATGTGTACGC 59.675 41.667 8.51 0.00 38.87 4.42
242 262 6.539826 TGCTGATCATTCAAATACGTCTTGAT 59.460 34.615 12.34 0.28 32.98 2.57
260 281 6.058183 ACAATCTAGGGTAAACATGCTGATC 58.942 40.000 0.00 0.00 0.00 2.92
290 312 5.309806 GGGGTATCTAGGGTTTACACATGAT 59.690 44.000 0.00 0.00 0.00 2.45
303 325 0.113776 TAGGCACCGGGGTATCTAGG 59.886 60.000 5.12 0.00 0.00 3.02
307 329 4.383444 GGTTTATATAGGCACCGGGGTATC 60.383 50.000 5.12 0.00 0.00 2.24
316 338 4.820894 ATCCCTCGGTTTATATAGGCAC 57.179 45.455 0.00 0.00 0.00 5.01
328 350 0.615544 TACGGACCAAATCCCTCGGT 60.616 55.000 0.00 0.00 46.04 4.69
343 365 3.775202 CCTTGAATGTCTGTCTCTACGG 58.225 50.000 0.00 0.00 0.00 4.02
344 366 3.182967 GCCTTGAATGTCTGTCTCTACG 58.817 50.000 0.00 0.00 0.00 3.51
354 376 3.636153 AACCTCTAGGCCTTGAATGTC 57.364 47.619 12.58 0.00 39.32 3.06
355 377 4.362677 TCTAACCTCTAGGCCTTGAATGT 58.637 43.478 12.58 11.92 39.32 2.71
360 382 3.769844 TGAGTTCTAACCTCTAGGCCTTG 59.230 47.826 12.58 9.98 39.32 3.61
364 386 5.599999 TGAATGAGTTCTAACCTCTAGGC 57.400 43.478 0.00 0.00 35.43 3.93
389 411 7.669304 CCATACTTCTTCTCTATCTGGAGATCA 59.331 40.741 0.00 0.00 41.29 2.92
390 412 7.669722 ACCATACTTCTTCTCTATCTGGAGATC 59.330 40.741 0.00 0.00 41.29 2.75
396 418 9.535878 GGTAAAACCATACTTCTTCTCTATCTG 57.464 37.037 0.00 0.00 38.42 2.90
407 429 8.297426 CCTTTTGAAGAGGTAAAACCATACTTC 58.703 37.037 16.39 16.39 41.95 3.01
408 430 7.232737 CCCTTTTGAAGAGGTAAAACCATACTT 59.767 37.037 0.79 1.60 41.95 2.24
409 431 6.719829 CCCTTTTGAAGAGGTAAAACCATACT 59.280 38.462 0.79 0.00 41.95 2.12
414 436 4.500887 GCACCCTTTTGAAGAGGTAAAACC 60.501 45.833 0.79 0.00 38.99 3.27
430 500 3.175710 ACCCAGGTTCGCACCCTT 61.176 61.111 0.00 0.00 45.63 3.95
435 505 1.339610 CAATTTTCACCCAGGTTCGCA 59.660 47.619 0.00 0.00 0.00 5.10
436 506 1.339929 ACAATTTTCACCCAGGTTCGC 59.660 47.619 0.00 0.00 0.00 4.70
444 514 2.009681 AGGGGACACAATTTTCACCC 57.990 50.000 0.00 0.00 35.70 4.61
450 520 8.168058 ACACTATAAGTAAAGGGGACACAATTT 58.832 33.333 0.00 0.00 0.00 1.82
461 531 9.530633 GTGATCTTGGTACACTATAAGTAAAGG 57.469 37.037 0.00 0.00 39.29 3.11
462 532 9.530633 GGTGATCTTGGTACACTATAAGTAAAG 57.469 37.037 0.00 0.00 39.29 1.85
470 540 5.023452 TGACTGGTGATCTTGGTACACTAT 58.977 41.667 0.00 0.00 39.29 2.12
496 567 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
497 568 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
523 594 3.006430 AGTCATCACATGTGTCGGTGTTA 59.994 43.478 24.63 3.87 36.43 2.41
524 595 2.143122 GTCATCACATGTGTCGGTGTT 58.857 47.619 24.63 0.93 36.43 3.32
525 596 1.344438 AGTCATCACATGTGTCGGTGT 59.656 47.619 24.63 4.83 36.43 4.16
534 605 9.850628 ATTTAAGATTGACAAAGTCATCACATG 57.149 29.630 0.12 0.00 42.40 3.21
556 627 6.278363 GGAGATACTAAGCCGACACAATTTA 58.722 40.000 0.00 0.00 0.00 1.40
571 642 3.181436 CCCCTGTTACCTCGGAGATACTA 60.181 52.174 6.58 0.00 33.89 1.82
572 643 2.424523 CCCCTGTTACCTCGGAGATACT 60.425 54.545 6.58 0.00 33.89 2.12
588 659 1.153369 CACGCACATCCTACCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
603 674 6.925211 ACTCATCCCTATGAATGTATACACG 58.075 40.000 7.96 0.00 41.57 4.49
612 683 7.500227 CACACACATAAACTCATCCCTATGAAT 59.500 37.037 0.00 0.00 41.57 2.57
620 691 6.593770 TCACATACACACACATAAACTCATCC 59.406 38.462 0.00 0.00 0.00 3.51
628 699 5.931724 CAGAACCTCACATACACACACATAA 59.068 40.000 0.00 0.00 0.00 1.90
635 706 1.343142 ACGCAGAACCTCACATACACA 59.657 47.619 0.00 0.00 0.00 3.72
636 707 2.080286 ACGCAGAACCTCACATACAC 57.920 50.000 0.00 0.00 0.00 2.90
692 763 7.044181 CCTCCGCATGTCATACTATTATTGAT 58.956 38.462 0.00 0.00 0.00 2.57
693 764 6.398095 CCTCCGCATGTCATACTATTATTGA 58.602 40.000 0.00 0.00 0.00 2.57
694 765 5.063944 GCCTCCGCATGTCATACTATTATTG 59.936 44.000 0.00 0.00 34.03 1.90
695 766 5.046304 AGCCTCCGCATGTCATACTATTATT 60.046 40.000 0.00 0.00 37.52 1.40
696 767 4.467795 AGCCTCCGCATGTCATACTATTAT 59.532 41.667 0.00 0.00 37.52 1.28
697 768 3.832490 AGCCTCCGCATGTCATACTATTA 59.168 43.478 0.00 0.00 37.52 0.98
698 769 2.634940 AGCCTCCGCATGTCATACTATT 59.365 45.455 0.00 0.00 37.52 1.73
699 770 2.251818 AGCCTCCGCATGTCATACTAT 58.748 47.619 0.00 0.00 37.52 2.12
700 771 1.704641 AGCCTCCGCATGTCATACTA 58.295 50.000 0.00 0.00 37.52 1.82
701 772 0.833287 AAGCCTCCGCATGTCATACT 59.167 50.000 0.00 0.00 37.52 2.12
702 773 1.331756 CAAAGCCTCCGCATGTCATAC 59.668 52.381 0.00 0.00 37.52 2.39
703 774 1.667236 CAAAGCCTCCGCATGTCATA 58.333 50.000 0.00 0.00 37.52 2.15
704 775 1.033746 CCAAAGCCTCCGCATGTCAT 61.034 55.000 0.00 0.00 37.52 3.06
705 776 1.675310 CCAAAGCCTCCGCATGTCA 60.675 57.895 0.00 0.00 37.52 3.58
706 777 1.675641 ACCAAAGCCTCCGCATGTC 60.676 57.895 0.00 0.00 37.52 3.06
707 778 1.973281 CACCAAAGCCTCCGCATGT 60.973 57.895 0.00 0.00 37.52 3.21
749 820 8.522830 ACGAACAACAAAATCAAGGATCATTAT 58.477 29.630 0.00 0.00 0.00 1.28
758 829 3.723764 CGGACACGAACAACAAAATCAAG 59.276 43.478 0.00 0.00 44.60 3.02
762 833 2.223386 CCACGGACACGAACAACAAAAT 60.223 45.455 0.00 0.00 44.60 1.82
804 875 2.557490 GAGCAGTAGTAGGAATACGGGG 59.443 54.545 0.00 0.00 0.00 5.73
828 899 1.528161 ACAAAACAAGTACTACGGCGC 59.472 47.619 6.90 0.00 0.00 6.53
829 900 3.054878 AGACAAAACAAGTACTACGGCG 58.945 45.455 4.80 4.80 0.00 6.46
830 901 5.413969 AAAGACAAAACAAGTACTACGGC 57.586 39.130 0.00 0.00 0.00 5.68
831 902 6.703165 AGGTAAAGACAAAACAAGTACTACGG 59.297 38.462 0.00 0.00 0.00 4.02
874 946 7.389884 ACGGATATACTACGACATGTATCTGTT 59.610 37.037 0.00 0.00 35.66 3.16
876 948 7.304919 ACGGATATACTACGACATGTATCTG 57.695 40.000 0.00 3.27 33.36 2.90
882 954 5.107607 GGCAAAACGGATATACTACGACATG 60.108 44.000 0.00 0.00 0.00 3.21
923 1009 1.896660 GCTTTGGAGTGAACCGGCA 60.897 57.895 0.00 0.00 0.00 5.69
945 1031 0.394488 TGCGTTTGGTGGAGGTTTGA 60.394 50.000 0.00 0.00 0.00 2.69
946 1032 0.030638 CTGCGTTTGGTGGAGGTTTG 59.969 55.000 0.00 0.00 0.00 2.93
990 1085 1.226773 GGCGGTCATGCTGAATTGC 60.227 57.895 0.00 0.00 34.52 3.56
991 1086 0.179156 GTGGCGGTCATGCTGAATTG 60.179 55.000 0.00 0.00 34.52 2.32
992 1087 1.315257 GGTGGCGGTCATGCTGAATT 61.315 55.000 0.00 0.00 34.52 2.17
993 1088 1.750399 GGTGGCGGTCATGCTGAAT 60.750 57.895 0.00 0.00 34.52 2.57
994 1089 2.359850 GGTGGCGGTCATGCTGAA 60.360 61.111 0.00 0.00 34.52 3.02
995 1090 3.315142 GAGGTGGCGGTCATGCTGA 62.315 63.158 0.00 0.00 34.52 4.26
996 1091 2.821366 GAGGTGGCGGTCATGCTG 60.821 66.667 0.00 0.00 34.52 4.41
997 1092 4.457496 CGAGGTGGCGGTCATGCT 62.457 66.667 0.00 0.00 34.52 3.79
1236 1331 0.392863 CGAACATGGGGAGCACATCA 60.393 55.000 0.00 0.00 0.00 3.07
1336 1431 2.046892 CAGGCCGGACTTGGAGTG 60.047 66.667 7.41 0.00 0.00 3.51
1484 1579 4.315122 CGGCGACCTCCTCGATCG 62.315 72.222 9.36 9.36 46.14 3.69
1903 1999 0.464870 TCGGAGCTAGCTAGACGACT 59.535 55.000 25.15 11.49 0.00 4.18
1949 2045 0.818296 AAGCTTATCGCGACACCTCT 59.182 50.000 12.93 2.02 45.59 3.69
1982 2078 3.249799 CGCACATGTAGACCAAACAGAAA 59.750 43.478 0.00 0.00 0.00 2.52
1995 2091 1.468127 CATTGGCAGAACGCACATGTA 59.532 47.619 0.00 0.00 45.17 2.29
2017 2113 8.692110 TCGTACAAGTTACCACATAGTATTTG 57.308 34.615 0.00 0.00 0.00 2.32
2018 2114 9.362539 CTTCGTACAAGTTACCACATAGTATTT 57.637 33.333 0.00 0.00 0.00 1.40
2019 2115 8.742777 TCTTCGTACAAGTTACCACATAGTATT 58.257 33.333 0.00 0.00 0.00 1.89
2021 2117 7.148188 CCTCTTCGTACAAGTTACCACATAGTA 60.148 40.741 0.00 0.00 0.00 1.82
2024 2120 5.105635 CCCTCTTCGTACAAGTTACCACATA 60.106 44.000 0.00 0.00 0.00 2.29
2025 2121 4.322499 CCCTCTTCGTACAAGTTACCACAT 60.322 45.833 0.00 0.00 0.00 3.21
2045 2143 3.375699 ACATACACAAGTAGCTAGCCCT 58.624 45.455 12.13 4.73 32.86 5.19
2090 2188 9.464714 CATAGTACATACAAGTAGCTAAACCAG 57.535 37.037 0.00 0.00 0.00 4.00
2111 2210 8.978874 TTCCAGAATAATGCATTACACATAGT 57.021 30.769 21.10 0.00 0.00 2.12
2112 2211 9.888878 CTTTCCAGAATAATGCATTACACATAG 57.111 33.333 21.10 9.11 0.00 2.23
2131 2230 2.178912 TTTACGCCTCCACTTTCCAG 57.821 50.000 0.00 0.00 0.00 3.86
2138 2237 0.958876 CACCCCTTTTACGCCTCCAC 60.959 60.000 0.00 0.00 0.00 4.02
2158 2257 8.735692 AAAATGATCAAAACAGTGAATTTGGT 57.264 26.923 19.01 15.04 37.19 3.67
2177 2276 9.667107 AGATCGTCCTAAACTAATGAAAAATGA 57.333 29.630 0.00 0.00 0.00 2.57
2196 2295 2.159099 TGGCACACAGGATAAGATCGTC 60.159 50.000 0.00 0.00 0.00 4.20
2210 2309 5.406649 TCATATCCGAAATTTTTGGCACAC 58.593 37.500 10.19 0.00 39.29 3.82
2222 2321 6.757947 CGGTAGTAAAAGGTTCATATCCGAAA 59.242 38.462 0.00 0.00 35.94 3.46
2254 2353 0.035739 TGAAACCCTACCGCCAAGTC 59.964 55.000 0.00 0.00 0.00 3.01
2255 2354 0.250597 GTGAAACCCTACCGCCAAGT 60.251 55.000 0.00 0.00 0.00 3.16
2266 2366 1.626825 TGGCAGTAGGTAGTGAAACCC 59.373 52.381 0.00 0.00 40.71 4.11
2297 2397 2.051941 GTTGACCACGACCCTACCA 58.948 57.895 0.00 0.00 0.00 3.25
2338 2438 2.561478 AGCCACTTGTCCACGTTATT 57.439 45.000 0.00 0.00 0.00 1.40
2341 2441 0.250166 GGTAGCCACTTGTCCACGTT 60.250 55.000 0.00 0.00 0.00 3.99
2343 2443 0.036388 ATGGTAGCCACTTGTCCACG 60.036 55.000 0.00 0.00 35.80 4.94
2346 2446 1.003118 TGTGATGGTAGCCACTTGTCC 59.997 52.381 0.00 0.00 35.80 4.02
2355 2455 1.369625 CCGAGGTTTGTGATGGTAGC 58.630 55.000 0.00 0.00 0.00 3.58
2359 2459 0.606401 ACTGCCGAGGTTTGTGATGG 60.606 55.000 0.00 0.00 0.00 3.51
2361 2461 2.632377 CATACTGCCGAGGTTTGTGAT 58.368 47.619 0.00 0.00 0.00 3.06
2370 2470 2.159099 TGCTCTAAACCATACTGCCGAG 60.159 50.000 0.00 0.00 0.00 4.63
2372 2472 2.309528 TGCTCTAAACCATACTGCCG 57.690 50.000 0.00 0.00 0.00 5.69
2376 2476 5.246307 GTTGGAGTTGCTCTAAACCATACT 58.754 41.667 0.00 0.00 33.06 2.12
2380 2480 2.489971 CGTTGGAGTTGCTCTAAACCA 58.510 47.619 0.00 0.00 33.06 3.67
2384 2484 1.289109 GCGCGTTGGAGTTGCTCTAA 61.289 55.000 8.43 0.00 0.00 2.10
2386 2486 3.044305 GCGCGTTGGAGTTGCTCT 61.044 61.111 8.43 0.00 0.00 4.09
2387 2487 4.090057 GGCGCGTTGGAGTTGCTC 62.090 66.667 8.43 0.00 0.00 4.26
2388 2488 4.927782 TGGCGCGTTGGAGTTGCT 62.928 61.111 8.43 0.00 0.00 3.91
2389 2489 2.747507 AATTGGCGCGTTGGAGTTGC 62.748 55.000 8.43 0.00 0.00 4.17
2390 2490 0.729140 GAATTGGCGCGTTGGAGTTG 60.729 55.000 8.43 0.00 0.00 3.16
2391 2491 1.169661 TGAATTGGCGCGTTGGAGTT 61.170 50.000 8.43 0.00 0.00 3.01
2392 2492 0.960364 ATGAATTGGCGCGTTGGAGT 60.960 50.000 8.43 0.00 0.00 3.85
2393 2493 0.171007 AATGAATTGGCGCGTTGGAG 59.829 50.000 8.43 0.00 0.00 3.86
2394 2494 0.600557 AAATGAATTGGCGCGTTGGA 59.399 45.000 8.43 0.00 0.00 3.53
2395 2495 1.126479 CAAAATGAATTGGCGCGTTGG 59.874 47.619 8.43 0.00 0.00 3.77
2396 2496 1.791785 ACAAAATGAATTGGCGCGTTG 59.208 42.857 8.43 2.32 34.56 4.10
2397 2497 2.147436 ACAAAATGAATTGGCGCGTT 57.853 40.000 8.43 0.00 34.56 4.84
2398 2498 2.058057 GAACAAAATGAATTGGCGCGT 58.942 42.857 8.43 0.00 34.56 6.01
2399 2499 1.057566 CGAACAAAATGAATTGGCGCG 59.942 47.619 0.00 0.00 34.56 6.86
2400 2500 1.201801 GCGAACAAAATGAATTGGCGC 60.202 47.619 0.00 0.00 44.50 6.53
2401 2501 1.057566 CGCGAACAAAATGAATTGGCG 59.942 47.619 0.00 0.00 36.18 5.69
2402 2502 1.201801 GCGCGAACAAAATGAATTGGC 60.202 47.619 12.10 0.00 34.56 4.52
2403 2503 1.057566 CGCGCGAACAAAATGAATTGG 59.942 47.619 28.94 0.00 34.56 3.16
2404 2504 1.522813 GCGCGCGAACAAAATGAATTG 60.523 47.619 37.18 0.00 36.37 2.32
2405 2505 0.707822 GCGCGCGAACAAAATGAATT 59.292 45.000 37.18 0.00 0.00 2.17
2406 2506 2.348856 GCGCGCGAACAAAATGAAT 58.651 47.368 37.18 0.00 0.00 2.57
2407 2507 3.822096 GCGCGCGAACAAAATGAA 58.178 50.000 37.18 0.00 0.00 2.57
2420 2520 3.784412 AACCGAAATGGACGCGCG 61.784 61.111 30.96 30.96 42.00 6.86
2421 2521 2.202298 CAACCGAAATGGACGCGC 60.202 61.111 5.73 0.00 42.00 6.86
2422 2522 2.202298 GCAACCGAAATGGACGCG 60.202 61.111 3.53 3.53 42.00 6.01
2423 2523 2.178273 GGCAACCGAAATGGACGC 59.822 61.111 0.00 0.00 42.00 5.19
2434 2534 2.458006 CTTTTCTGTCCGCGGCAACC 62.458 60.000 23.51 8.70 0.00 3.77
2435 2535 1.082104 CTTTTCTGTCCGCGGCAAC 60.082 57.895 23.51 15.89 0.00 4.17
2436 2536 1.503818 GACTTTTCTGTCCGCGGCAA 61.504 55.000 23.51 10.16 0.00 4.52
2437 2537 1.959226 GACTTTTCTGTCCGCGGCA 60.959 57.895 23.51 20.67 0.00 5.69
2438 2538 2.861006 GACTTTTCTGTCCGCGGC 59.139 61.111 23.51 16.75 0.00 6.53
2439 2539 2.380410 CCGACTTTTCTGTCCGCGG 61.380 63.158 22.12 22.12 33.70 6.46
2440 2540 3.011760 GCCGACTTTTCTGTCCGCG 62.012 63.158 0.00 0.00 33.27 6.46
2441 2541 2.677979 GGCCGACTTTTCTGTCCGC 61.678 63.158 0.00 0.00 39.33 5.54
2442 2542 2.033194 GGGCCGACTTTTCTGTCCG 61.033 63.158 0.00 0.00 33.70 4.79
2443 2543 0.536460 TTGGGCCGACTTTTCTGTCC 60.536 55.000 0.00 0.00 31.49 4.02
2444 2544 0.591659 GTTGGGCCGACTTTTCTGTC 59.408 55.000 17.07 0.00 0.00 3.51
2445 2545 1.164041 CGTTGGGCCGACTTTTCTGT 61.164 55.000 21.44 0.00 0.00 3.41
2446 2546 1.164041 ACGTTGGGCCGACTTTTCTG 61.164 55.000 21.44 7.46 0.00 3.02
2447 2547 1.147600 ACGTTGGGCCGACTTTTCT 59.852 52.632 21.44 0.00 0.00 2.52
2448 2548 1.281656 CACGTTGGGCCGACTTTTC 59.718 57.895 21.44 0.00 0.00 2.29
2449 2549 2.841160 GCACGTTGGGCCGACTTTT 61.841 57.895 21.44 3.14 0.00 2.27
2450 2550 3.284449 GCACGTTGGGCCGACTTT 61.284 61.111 21.44 5.73 0.00 2.66
2457 2557 2.579684 TTTTGGTTGGCACGTTGGGC 62.580 55.000 0.00 0.00 0.00 5.36
2458 2558 0.808060 GTTTTGGTTGGCACGTTGGG 60.808 55.000 0.00 0.00 0.00 4.12
2459 2559 1.142778 CGTTTTGGTTGGCACGTTGG 61.143 55.000 0.00 0.00 0.00 3.77
2460 2560 1.142778 CCGTTTTGGTTGGCACGTTG 61.143 55.000 0.00 0.00 0.00 4.10
2461 2561 1.139947 CCGTTTTGGTTGGCACGTT 59.860 52.632 0.00 0.00 0.00 3.99
2462 2562 2.802106 CCGTTTTGGTTGGCACGT 59.198 55.556 0.00 0.00 0.00 4.49
2467 2567 2.026879 CGTGGCCGTTTTGGTTGG 59.973 61.111 0.00 0.00 41.21 3.77
2468 2568 2.656973 GCGTGGCCGTTTTGGTTG 60.657 61.111 0.00 0.00 41.21 3.77
2469 2569 4.258932 CGCGTGGCCGTTTTGGTT 62.259 61.111 0.00 0.00 41.21 3.67
2471 2571 4.676586 GACGCGTGGCCGTTTTGG 62.677 66.667 20.70 0.00 42.24 3.28
2472 2572 3.645975 AGACGCGTGGCCGTTTTG 61.646 61.111 20.70 0.00 42.24 2.44
2473 2573 3.645975 CAGACGCGTGGCCGTTTT 61.646 61.111 20.70 0.00 42.24 2.43
2478 2578 3.595108 GAAAAGCAGACGCGTGGCC 62.595 63.158 20.70 1.12 45.49 5.36
2479 2579 2.127232 GAAAAGCAGACGCGTGGC 60.127 61.111 20.70 21.02 45.49 5.01
2480 2580 2.170985 CGAAAAGCAGACGCGTGG 59.829 61.111 20.70 10.29 45.49 4.94
2481 2581 1.154836 GACGAAAAGCAGACGCGTG 60.155 57.895 20.70 3.81 45.49 5.34
2482 2582 2.308039 GGACGAAAAGCAGACGCGT 61.308 57.895 13.85 13.85 45.49 6.01
2483 2583 2.470286 GGACGAAAAGCAGACGCG 59.530 61.111 3.53 3.53 45.49 6.01
2484 2584 2.470286 CGGACGAAAAGCAGACGC 59.530 61.111 0.00 0.00 38.99 5.19
2485 2585 2.470286 GCGGACGAAAAGCAGACG 59.530 61.111 0.00 0.00 0.00 4.18
2486 2586 1.668151 AGGCGGACGAAAAGCAGAC 60.668 57.895 0.00 0.00 0.00 3.51
2487 2587 1.667830 CAGGCGGACGAAAAGCAGA 60.668 57.895 0.00 0.00 0.00 4.26
2488 2588 2.863153 CAGGCGGACGAAAAGCAG 59.137 61.111 0.00 0.00 0.00 4.24
2489 2589 3.353836 GCAGGCGGACGAAAAGCA 61.354 61.111 0.00 0.00 0.00 3.91
2490 2590 4.103103 GGCAGGCGGACGAAAAGC 62.103 66.667 0.00 0.00 0.00 3.51
2491 2591 2.258013 TTGGCAGGCGGACGAAAAG 61.258 57.895 0.00 0.00 0.00 2.27
2492 2592 2.203224 TTGGCAGGCGGACGAAAA 60.203 55.556 0.00 0.00 0.00 2.29
2493 2593 2.975799 GTTGGCAGGCGGACGAAA 60.976 61.111 0.00 0.00 0.00 3.46
2497 2597 4.740822 ATGGGTTGGCAGGCGGAC 62.741 66.667 0.00 0.00 0.00 4.79
2498 2598 3.936772 GAATGGGTTGGCAGGCGGA 62.937 63.158 0.00 0.00 0.00 5.54
2499 2599 3.451894 GAATGGGTTGGCAGGCGG 61.452 66.667 0.00 0.00 0.00 6.13
2500 2600 3.451894 GGAATGGGTTGGCAGGCG 61.452 66.667 0.00 0.00 0.00 5.52
2501 2601 3.076916 GGGAATGGGTTGGCAGGC 61.077 66.667 0.00 0.00 0.00 4.85
2502 2602 2.755469 CGGGAATGGGTTGGCAGG 60.755 66.667 0.00 0.00 0.00 4.85
2503 2603 2.755469 CCGGGAATGGGTTGGCAG 60.755 66.667 0.00 0.00 0.00 4.85
2507 2607 3.677480 ATGGGCCGGGAATGGGTTG 62.677 63.158 2.18 0.00 0.00 3.77
2508 2608 2.469563 AAATGGGCCGGGAATGGGTT 62.470 55.000 2.18 0.00 0.00 4.11
2509 2609 2.469563 AAAATGGGCCGGGAATGGGT 62.470 55.000 2.18 0.00 0.00 4.51
2510 2610 1.271127 AAAAATGGGCCGGGAATGGG 61.271 55.000 2.18 0.00 0.00 4.00
2511 2611 0.107752 CAAAAATGGGCCGGGAATGG 60.108 55.000 2.18 0.00 0.00 3.16
2512 2612 0.901124 TCAAAAATGGGCCGGGAATG 59.099 50.000 2.18 0.00 0.00 2.67
2513 2613 1.194218 CTCAAAAATGGGCCGGGAAT 58.806 50.000 2.18 0.00 0.00 3.01
2514 2614 1.540435 GCTCAAAAATGGGCCGGGAA 61.540 55.000 2.18 0.00 0.00 3.97
2515 2615 1.981853 GCTCAAAAATGGGCCGGGA 60.982 57.895 2.18 0.00 0.00 5.14
2516 2616 2.578664 GCTCAAAAATGGGCCGGG 59.421 61.111 2.18 0.00 0.00 5.73
2517 2617 2.578664 GGCTCAAAAATGGGCCGG 59.421 61.111 3.61 0.00 35.08 6.13
2519 2619 1.134610 CATGAGGCTCAAAAATGGGCC 60.135 52.381 22.84 11.78 44.38 5.80
2520 2620 1.551883 ACATGAGGCTCAAAAATGGGC 59.448 47.619 22.84 0.00 0.00 5.36
2521 2621 2.675889 GCACATGAGGCTCAAAAATGGG 60.676 50.000 22.84 17.06 0.00 4.00
2522 2622 2.613691 GCACATGAGGCTCAAAAATGG 58.386 47.619 22.84 9.99 0.00 3.16
2523 2623 2.256174 CGCACATGAGGCTCAAAAATG 58.744 47.619 22.84 17.19 0.00 2.32
2524 2624 1.888512 ACGCACATGAGGCTCAAAAAT 59.111 42.857 22.84 1.11 0.00 1.82
2525 2625 1.266718 GACGCACATGAGGCTCAAAAA 59.733 47.619 22.84 0.00 0.00 1.94
2526 2626 0.874390 GACGCACATGAGGCTCAAAA 59.126 50.000 22.84 0.00 0.00 2.44
2527 2627 1.291184 CGACGCACATGAGGCTCAAA 61.291 55.000 22.84 0.00 0.00 2.69
2528 2628 1.737735 CGACGCACATGAGGCTCAA 60.738 57.895 22.84 5.13 0.00 3.02
2529 2629 2.125952 CGACGCACATGAGGCTCA 60.126 61.111 21.19 21.19 0.00 4.26
2530 2630 2.887568 CCGACGCACATGAGGCTC 60.888 66.667 7.79 7.79 0.00 4.70
2542 2642 2.526993 TTTTGTGTCCGTGCCGACG 61.527 57.895 0.00 0.00 45.67 5.12
2543 2643 1.010462 GTTTTGTGTCCGTGCCGAC 60.010 57.895 0.00 0.00 0.00 4.79
2544 2644 1.433053 CTGTTTTGTGTCCGTGCCGA 61.433 55.000 0.00 0.00 0.00 5.54
2545 2645 1.010125 CTGTTTTGTGTCCGTGCCG 60.010 57.895 0.00 0.00 0.00 5.69
2546 2646 0.028902 GTCTGTTTTGTGTCCGTGCC 59.971 55.000 0.00 0.00 0.00 5.01
2547 2647 0.315869 CGTCTGTTTTGTGTCCGTGC 60.316 55.000 0.00 0.00 0.00 5.34
2548 2648 0.315869 GCGTCTGTTTTGTGTCCGTG 60.316 55.000 0.00 0.00 0.00 4.94
2549 2649 1.758319 CGCGTCTGTTTTGTGTCCGT 61.758 55.000 0.00 0.00 0.00 4.69
2550 2650 1.083657 CGCGTCTGTTTTGTGTCCG 60.084 57.895 0.00 0.00 0.00 4.79
2551 2651 0.315869 CACGCGTCTGTTTTGTGTCC 60.316 55.000 9.86 0.00 0.00 4.02
2552 2652 0.648441 TCACGCGTCTGTTTTGTGTC 59.352 50.000 9.86 0.00 32.55 3.67
2553 2653 0.372334 GTCACGCGTCTGTTTTGTGT 59.628 50.000 9.86 0.00 32.55 3.72
2554 2654 0.650476 CGTCACGCGTCTGTTTTGTG 60.650 55.000 9.86 0.00 35.54 3.33
2555 2655 1.634225 CGTCACGCGTCTGTTTTGT 59.366 52.632 9.86 0.00 35.54 2.83
2556 2656 1.717728 GCGTCACGCGTCTGTTTTG 60.718 57.895 9.86 0.00 44.55 2.44
2557 2657 2.624264 GCGTCACGCGTCTGTTTT 59.376 55.556 9.86 0.00 44.55 2.43
2568 2668 4.436998 AGTAGGCAGGCGCGTCAC 62.437 66.667 15.58 3.87 39.92 3.67
2569 2669 4.129737 GAGTAGGCAGGCGCGTCA 62.130 66.667 15.58 0.00 39.92 4.35
2570 2670 4.874977 GGAGTAGGCAGGCGCGTC 62.875 72.222 0.21 0.21 39.92 5.19
2597 2697 1.447838 AATGTGCCACCGACTAGCG 60.448 57.895 0.00 0.00 40.47 4.26
2598 2698 1.369091 CCAATGTGCCACCGACTAGC 61.369 60.000 0.00 0.00 0.00 3.42
2599 2699 1.369091 GCCAATGTGCCACCGACTAG 61.369 60.000 0.00 0.00 0.00 2.57
2600 2700 1.376683 GCCAATGTGCCACCGACTA 60.377 57.895 0.00 0.00 0.00 2.59
2601 2701 2.672996 GCCAATGTGCCACCGACT 60.673 61.111 0.00 0.00 0.00 4.18
2609 2709 2.129785 GGGAGGATGGCCAATGTGC 61.130 63.158 10.96 0.00 36.29 4.57
2610 2710 1.456331 GGGGAGGATGGCCAATGTG 60.456 63.158 10.96 0.00 36.29 3.21
2611 2711 2.704424 GGGGGAGGATGGCCAATGT 61.704 63.158 10.96 0.00 36.29 2.71
2612 2712 2.027434 ATGGGGGAGGATGGCCAATG 62.027 60.000 10.96 0.00 36.29 2.82
2613 2713 1.306454 AATGGGGGAGGATGGCCAAT 61.306 55.000 10.96 0.00 36.29 3.16
2614 2714 1.940742 AATGGGGGAGGATGGCCAA 60.941 57.895 10.96 0.00 36.29 4.52
2615 2715 2.287896 AATGGGGGAGGATGGCCA 60.288 61.111 8.56 8.56 36.29 5.36
2616 2716 2.523016 GAATGGGGGAGGATGGCC 59.477 66.667 0.00 0.00 0.00 5.36
2617 2717 1.948403 TTGGAATGGGGGAGGATGGC 61.948 60.000 0.00 0.00 0.00 4.40
2618 2718 0.106015 GTTGGAATGGGGGAGGATGG 60.106 60.000 0.00 0.00 0.00 3.51
2619 2719 0.630673 TGTTGGAATGGGGGAGGATG 59.369 55.000 0.00 0.00 0.00 3.51
2620 2720 1.007118 GTTGTTGGAATGGGGGAGGAT 59.993 52.381 0.00 0.00 0.00 3.24
2621 2721 0.407918 GTTGTTGGAATGGGGGAGGA 59.592 55.000 0.00 0.00 0.00 3.71
2622 2722 0.114168 TGTTGTTGGAATGGGGGAGG 59.886 55.000 0.00 0.00 0.00 4.30
2623 2723 2.008242 TTGTTGTTGGAATGGGGGAG 57.992 50.000 0.00 0.00 0.00 4.30
2624 2724 2.043227 GTTTGTTGTTGGAATGGGGGA 58.957 47.619 0.00 0.00 0.00 4.81
2625 2725 1.071542 GGTTTGTTGTTGGAATGGGGG 59.928 52.381 0.00 0.00 0.00 5.40
2626 2726 1.071542 GGGTTTGTTGTTGGAATGGGG 59.928 52.381 0.00 0.00 0.00 4.96
2627 2727 2.037121 GAGGGTTTGTTGTTGGAATGGG 59.963 50.000 0.00 0.00 0.00 4.00
2628 2728 2.288152 CGAGGGTTTGTTGTTGGAATGG 60.288 50.000 0.00 0.00 0.00 3.16
2629 2729 2.862140 GCGAGGGTTTGTTGTTGGAATG 60.862 50.000 0.00 0.00 0.00 2.67
2630 2730 1.339929 GCGAGGGTTTGTTGTTGGAAT 59.660 47.619 0.00 0.00 0.00 3.01
2631 2731 0.741915 GCGAGGGTTTGTTGTTGGAA 59.258 50.000 0.00 0.00 0.00 3.53
2632 2732 1.104577 GGCGAGGGTTTGTTGTTGGA 61.105 55.000 0.00 0.00 0.00 3.53
2633 2733 1.362355 GGCGAGGGTTTGTTGTTGG 59.638 57.895 0.00 0.00 0.00 3.77
2634 2734 1.362355 GGGCGAGGGTTTGTTGTTG 59.638 57.895 0.00 0.00 0.00 3.33
2635 2735 2.190841 CGGGCGAGGGTTTGTTGTT 61.191 57.895 0.00 0.00 0.00 2.83
2636 2736 2.593436 CGGGCGAGGGTTTGTTGT 60.593 61.111 0.00 0.00 0.00 3.32
2637 2737 4.038080 GCGGGCGAGGGTTTGTTG 62.038 66.667 0.00 0.00 0.00 3.33
2654 2754 3.691342 TGGTGGCGACGAAGGAGG 61.691 66.667 0.00 0.00 0.00 4.30
2655 2755 2.432628 GTGGTGGCGACGAAGGAG 60.433 66.667 0.00 0.00 0.00 3.69
2656 2756 3.998672 GGTGGTGGCGACGAAGGA 61.999 66.667 0.00 0.00 0.00 3.36
2668 2768 4.986708 AAAATGGGCGGCGGTGGT 62.987 61.111 9.78 0.00 0.00 4.16
2669 2769 3.641159 GAAAAATGGGCGGCGGTGG 62.641 63.158 9.78 0.00 0.00 4.61
2670 2770 2.126110 GAAAAATGGGCGGCGGTG 60.126 61.111 9.78 0.00 0.00 4.94
2671 2771 3.378602 GGAAAAATGGGCGGCGGT 61.379 61.111 9.78 0.00 0.00 5.68
2672 2772 4.490575 CGGAAAAATGGGCGGCGG 62.491 66.667 9.78 0.00 0.00 6.13
2673 2773 4.490575 CCGGAAAAATGGGCGGCG 62.491 66.667 0.51 0.51 0.00 6.46
2674 2774 3.378602 ACCGGAAAAATGGGCGGC 61.379 61.111 9.46 0.00 0.00 6.53
2675 2775 2.571231 CACCGGAAAAATGGGCGG 59.429 61.111 9.46 0.00 0.00 6.13
2676 2776 2.126110 GCACCGGAAAAATGGGCG 60.126 61.111 9.46 0.00 0.00 6.13
2677 2777 2.225791 GAGGCACCGGAAAAATGGGC 62.226 60.000 9.46 0.34 0.00 5.36
2678 2778 0.611896 AGAGGCACCGGAAAAATGGG 60.612 55.000 9.46 0.00 0.00 4.00
2679 2779 0.527565 CAGAGGCACCGGAAAAATGG 59.472 55.000 9.46 0.00 0.00 3.16
2680 2780 0.109132 GCAGAGGCACCGGAAAAATG 60.109 55.000 9.46 0.00 40.72 2.32
2681 2781 1.250840 GGCAGAGGCACCGGAAAAAT 61.251 55.000 9.46 0.00 43.71 1.82
2682 2782 1.901464 GGCAGAGGCACCGGAAAAA 60.901 57.895 9.46 0.00 43.71 1.94
2683 2783 2.282180 GGCAGAGGCACCGGAAAA 60.282 61.111 9.46 0.00 43.71 2.29
2684 2784 3.551496 CTGGCAGAGGCACCGGAAA 62.551 63.158 9.46 0.00 43.71 3.13
2685 2785 4.020617 CTGGCAGAGGCACCGGAA 62.021 66.667 9.46 0.00 43.71 4.30
2689 2789 4.341783 ACAGCTGGCAGAGGCACC 62.342 66.667 20.86 0.00 43.71 5.01
2690 2790 2.745492 GACAGCTGGCAGAGGCAC 60.745 66.667 20.86 0.00 43.71 5.01
2691 2791 4.383861 CGACAGCTGGCAGAGGCA 62.384 66.667 22.03 0.00 43.71 4.75
2693 2793 3.699894 ACCGACAGCTGGCAGAGG 61.700 66.667 22.03 15.61 0.00 3.69
2694 2794 2.433838 CACCGACAGCTGGCAGAG 60.434 66.667 22.03 10.19 0.00 3.35
2695 2795 4.687215 GCACCGACAGCTGGCAGA 62.687 66.667 22.03 0.00 0.00 4.26
2712 2812 2.895372 GTAAGGGCGATGTGGCGG 60.895 66.667 0.00 0.00 46.04 6.13
2713 2813 1.743623 TTGTAAGGGCGATGTGGCG 60.744 57.895 0.00 0.00 46.04 5.69
2714 2814 1.800681 GTTGTAAGGGCGATGTGGC 59.199 57.895 0.00 0.00 43.88 5.01
2715 2815 1.977594 GCGTTGTAAGGGCGATGTGG 61.978 60.000 0.00 0.00 0.00 4.17
2716 2816 1.423845 GCGTTGTAAGGGCGATGTG 59.576 57.895 0.00 0.00 0.00 3.21
2717 2817 1.743995 GGCGTTGTAAGGGCGATGT 60.744 57.895 0.00 0.00 0.00 3.06
2718 2818 3.098555 GGCGTTGTAAGGGCGATG 58.901 61.111 0.00 0.00 0.00 3.84
2723 2823 3.428282 GTGGCGGCGTTGTAAGGG 61.428 66.667 9.37 0.00 0.00 3.95
2724 2824 3.428282 GGTGGCGGCGTTGTAAGG 61.428 66.667 9.37 0.00 0.00 2.69
2725 2825 2.358247 AGGTGGCGGCGTTGTAAG 60.358 61.111 9.37 0.00 0.00 2.34
2726 2826 2.357760 GAGGTGGCGGCGTTGTAA 60.358 61.111 9.37 0.00 0.00 2.41
2727 2827 4.382320 GGAGGTGGCGGCGTTGTA 62.382 66.667 9.37 0.00 0.00 2.41
2734 2834 4.838152 CGACATGGGAGGTGGCGG 62.838 72.222 0.00 0.00 44.13 6.13
2737 2837 4.838152 CGGCGACATGGGAGGTGG 62.838 72.222 0.00 0.00 0.00 4.61
2745 2845 3.490759 GACAGTGGCGGCGACATG 61.491 66.667 22.61 20.33 0.00 3.21
2751 2851 3.414700 CAAGACGACAGTGGCGGC 61.415 66.667 24.75 22.27 36.94 6.53
2752 2852 3.414700 GCAAGACGACAGTGGCGG 61.415 66.667 24.75 5.56 0.00 6.13
2753 2853 3.414700 GGCAAGACGACAGTGGCG 61.415 66.667 18.98 18.98 0.00 5.69
2754 2854 3.414700 CGGCAAGACGACAGTGGC 61.415 66.667 0.00 0.00 35.47 5.01
2755 2855 2.486636 TAGCGGCAAGACGACAGTGG 62.487 60.000 0.00 0.00 35.47 4.00
2756 2856 1.073216 CTAGCGGCAAGACGACAGTG 61.073 60.000 0.00 0.00 35.47 3.66
2757 2857 1.213013 CTAGCGGCAAGACGACAGT 59.787 57.895 0.00 0.00 35.47 3.55
2758 2858 1.517257 CCTAGCGGCAAGACGACAG 60.517 63.158 0.00 0.00 35.47 3.51
2759 2859 2.571757 CCTAGCGGCAAGACGACA 59.428 61.111 0.00 0.00 35.47 4.35
2760 2860 2.017559 ATCCCTAGCGGCAAGACGAC 62.018 60.000 0.00 0.00 35.47 4.34
2761 2861 1.735376 GATCCCTAGCGGCAAGACGA 61.735 60.000 0.00 0.00 35.47 4.20
2762 2862 1.300233 GATCCCTAGCGGCAAGACG 60.300 63.158 1.45 0.00 0.00 4.18
2763 2863 1.069935 GGATCCCTAGCGGCAAGAC 59.930 63.158 0.00 0.00 0.00 3.01
2764 2864 2.498941 CGGATCCCTAGCGGCAAGA 61.499 63.158 6.06 0.00 0.00 3.02
2765 2865 2.028125 TTCGGATCCCTAGCGGCAAG 62.028 60.000 6.06 0.00 0.00 4.01
2766 2866 1.618876 TTTCGGATCCCTAGCGGCAA 61.619 55.000 6.06 0.00 0.00 4.52
2767 2867 2.028125 CTTTCGGATCCCTAGCGGCA 62.028 60.000 6.06 0.00 0.00 5.69
2768 2868 1.301009 CTTTCGGATCCCTAGCGGC 60.301 63.158 6.06 0.00 0.00 6.53
2769 2869 1.301009 GCTTTCGGATCCCTAGCGG 60.301 63.158 6.06 0.00 0.00 5.52
2770 2870 0.105039 AAGCTTTCGGATCCCTAGCG 59.895 55.000 17.09 2.54 36.96 4.26
2771 2871 1.541452 GGAAGCTTTCGGATCCCTAGC 60.541 57.143 15.95 15.95 0.00 3.42
2772 2872 1.070914 GGGAAGCTTTCGGATCCCTAG 59.929 57.143 11.11 2.06 46.65 3.02
2773 2873 1.129058 GGGAAGCTTTCGGATCCCTA 58.871 55.000 11.11 0.00 46.65 3.53
2774 2874 1.915983 GGGAAGCTTTCGGATCCCT 59.084 57.895 11.11 0.00 46.65 4.20
2775 2875 4.561452 GGGAAGCTTTCGGATCCC 57.439 61.111 6.06 0.86 44.43 3.85
2776 2876 0.748367 GGTGGGAAGCTTTCGGATCC 60.748 60.000 0.00 0.00 0.00 3.36
2777 2877 0.748367 GGGTGGGAAGCTTTCGGATC 60.748 60.000 0.00 0.00 0.00 3.36
2778 2878 1.303282 GGGTGGGAAGCTTTCGGAT 59.697 57.895 0.00 0.00 0.00 4.18
2779 2879 2.754375 GGGTGGGAAGCTTTCGGA 59.246 61.111 0.00 0.00 0.00 4.55
2780 2880 2.361230 GGGGTGGGAAGCTTTCGG 60.361 66.667 0.00 0.00 0.00 4.30
2781 2881 2.361230 GGGGGTGGGAAGCTTTCG 60.361 66.667 0.00 0.00 0.00 3.46
2782 2882 1.606601 GTGGGGGTGGGAAGCTTTC 60.607 63.158 0.00 0.00 0.00 2.62
2783 2883 2.081585 GAGTGGGGGTGGGAAGCTTT 62.082 60.000 0.00 0.00 0.00 3.51
2784 2884 2.452491 AGTGGGGGTGGGAAGCTT 60.452 61.111 0.00 0.00 0.00 3.74
2785 2885 2.936032 GAGTGGGGGTGGGAAGCT 60.936 66.667 0.00 0.00 0.00 3.74
2786 2886 4.048470 GGAGTGGGGGTGGGAAGC 62.048 72.222 0.00 0.00 0.00 3.86
2787 2887 3.339093 GGGAGTGGGGGTGGGAAG 61.339 72.222 0.00 0.00 0.00 3.46
2795 2895 3.009115 ATGTGTCGGGGAGTGGGG 61.009 66.667 0.00 0.00 0.00 4.96
2796 2896 2.584608 GATGTGTCGGGGAGTGGG 59.415 66.667 0.00 0.00 0.00 4.61
2797 2897 2.584608 GGATGTGTCGGGGAGTGG 59.415 66.667 0.00 0.00 0.00 4.00
2798 2898 2.184322 CGGATGTGTCGGGGAGTG 59.816 66.667 0.00 0.00 0.00 3.51
2799 2899 3.771160 GCGGATGTGTCGGGGAGT 61.771 66.667 0.00 0.00 0.00 3.85
2800 2900 4.873129 CGCGGATGTGTCGGGGAG 62.873 72.222 0.00 0.00 39.13 4.30
2804 2904 3.925362 TTGGTCGCGGATGTGTCGG 62.925 63.158 6.13 0.00 0.00 4.79
2805 2905 2.431771 TTGGTCGCGGATGTGTCG 60.432 61.111 6.13 0.00 0.00 4.35
2806 2906 0.669318 TTCTTGGTCGCGGATGTGTC 60.669 55.000 6.13 0.00 0.00 3.67
2807 2907 0.670546 CTTCTTGGTCGCGGATGTGT 60.671 55.000 6.13 0.00 0.00 3.72
2808 2908 1.970917 GCTTCTTGGTCGCGGATGTG 61.971 60.000 6.13 0.00 0.00 3.21
2809 2909 1.741770 GCTTCTTGGTCGCGGATGT 60.742 57.895 6.13 0.00 0.00 3.06
2810 2910 2.464459 GGCTTCTTGGTCGCGGATG 61.464 63.158 6.13 0.00 0.00 3.51
2811 2911 2.125106 GGCTTCTTGGTCGCGGAT 60.125 61.111 6.13 0.00 0.00 4.18
2812 2912 3.621805 TGGCTTCTTGGTCGCGGA 61.622 61.111 6.13 0.00 0.00 5.54
2813 2913 3.423154 GTGGCTTCTTGGTCGCGG 61.423 66.667 6.13 0.00 0.00 6.46
2814 2914 3.423154 GGTGGCTTCTTGGTCGCG 61.423 66.667 0.00 0.00 0.00 5.87
2815 2915 2.032681 AGGTGGCTTCTTGGTCGC 59.967 61.111 0.00 0.00 0.00 5.19
2816 2916 1.738099 CGAGGTGGCTTCTTGGTCG 60.738 63.158 0.00 0.00 0.00 4.79
2817 2917 2.035442 GCGAGGTGGCTTCTTGGTC 61.035 63.158 0.00 0.00 0.00 4.02
2818 2918 2.032681 GCGAGGTGGCTTCTTGGT 59.967 61.111 0.00 0.00 0.00 3.67
2819 2919 2.747855 GGCGAGGTGGCTTCTTGG 60.748 66.667 0.00 0.00 40.72 3.61
2820 2920 3.121030 CGGCGAGGTGGCTTCTTG 61.121 66.667 0.00 0.00 42.02 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.