Multiple sequence alignment - TraesCS3B01G120700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G120700 chr3B 100.000 1943 0 0 844 2786 90858107 90860049 0.000000e+00 3589.0
1 TraesCS3B01G120700 chr3B 100.000 598 0 0 1 598 90857264 90857861 0.000000e+00 1105.0
2 TraesCS3B01G120700 chr3B 71.242 459 118 11 1122 1573 439333730 439333279 1.360000e-18 104.0
3 TraesCS3B01G120700 chr3B 100.000 49 0 0 1 49 354371003 354371051 1.060000e-14 91.6
4 TraesCS3B01G120700 chr3D 92.748 1379 56 22 844 2202 58080543 58081897 0.000000e+00 1953.0
5 TraesCS3B01G120700 chr3D 95.167 269 7 1 330 598 58080201 58080463 1.190000e-113 420.0
6 TraesCS3B01G120700 chr3D 94.527 201 7 4 50 247 58080003 58080202 9.690000e-80 307.0
7 TraesCS3B01G120700 chr3D 71.087 460 117 13 1122 1573 340415724 340415273 6.350000e-17 99.0
8 TraesCS3B01G120700 chr3A 91.389 1382 63 24 844 2202 66907721 66909069 0.000000e+00 1842.0
9 TraesCS3B01G120700 chr3A 95.018 542 25 2 2202 2741 80426297 80425756 0.000000e+00 850.0
10 TraesCS3B01G120700 chr3A 90.146 274 7 9 330 598 66907385 66907643 3.440000e-89 339.0
11 TraesCS3B01G120700 chr3A 92.157 204 9 2 50 247 66907184 66907386 5.880000e-72 281.0
12 TraesCS3B01G120700 chr3A 71.429 462 118 11 1119 1573 464319832 464320286 2.930000e-20 110.0
13 TraesCS3B01G120700 chr3A 100.000 49 0 0 1 49 108135191 108135143 1.060000e-14 91.6
14 TraesCS3B01G120700 chr3A 100.000 49 0 0 1 49 108198864 108198816 1.060000e-14 91.6
15 TraesCS3B01G120700 chr3A 100.000 49 0 0 1 49 108290263 108290215 1.060000e-14 91.6
16 TraesCS3B01G120700 chr3A 100.000 47 0 0 1 47 108167017 108166971 1.370000e-13 87.9
17 TraesCS3B01G120700 chr3A 89.130 46 4 1 2114 2159 412935997 412935953 3.880000e-04 56.5
18 TraesCS3B01G120700 chr5A 95.194 541 25 1 2202 2741 483276610 483276070 0.000000e+00 854.0
19 TraesCS3B01G120700 chr2A 95.037 544 26 1 2199 2741 90419661 90420204 0.000000e+00 854.0
20 TraesCS3B01G120700 chr2A 95.194 541 25 1 2202 2741 757574254 757573714 0.000000e+00 854.0
21 TraesCS3B01G120700 chr6A 95.185 540 25 1 2202 2740 502373737 502373198 0.000000e+00 852.0
22 TraesCS3B01G120700 chr6A 95.009 541 26 1 2202 2741 570390906 570390366 0.000000e+00 848.0
23 TraesCS3B01G120700 chr7D 95.009 541 26 1 2202 2741 534470980 534471520 0.000000e+00 848.0
24 TraesCS3B01G120700 chr7D 92.079 101 5 3 233 331 32004667 32004568 3.740000e-29 139.0
25 TraesCS3B01G120700 chr7D 89.720 107 8 3 243 348 7471668 7471564 1.740000e-27 134.0
26 TraesCS3B01G120700 chr4D 95.009 541 26 1 2202 2741 313597774 313597234 0.000000e+00 848.0
27 TraesCS3B01G120700 chr4D 85.938 64 5 4 2103 2164 93713845 93713784 6.440000e-07 65.8
28 TraesCS3B01G120700 chr1A 95.009 541 26 1 2202 2741 377649574 377649034 0.000000e+00 848.0
29 TraesCS3B01G120700 chr1A 97.959 49 1 0 1 49 271618749 271618701 4.940000e-13 86.1
30 TraesCS3B01G120700 chr2D 98.851 87 1 0 245 331 22175478 22175392 3.720000e-34 156.0
31 TraesCS3B01G120700 chr2D 93.878 49 3 0 1 49 326399634 326399586 1.070000e-09 75.0
32 TraesCS3B01G120700 chr7B 93.750 96 4 2 240 334 201496567 201496473 2.890000e-30 143.0
33 TraesCS3B01G120700 chr6D 94.624 93 3 2 245 336 350223148 350223057 2.890000e-30 143.0
34 TraesCS3B01G120700 chr6B 92.000 100 6 2 236 334 120317763 120317861 3.740000e-29 139.0
35 TraesCS3B01G120700 chr1D 92.784 97 5 2 245 340 480551056 480550961 3.740000e-29 139.0
36 TraesCS3B01G120700 chr1D 95.918 49 2 0 1 49 203321441 203321489 2.300000e-11 80.5
37 TraesCS3B01G120700 chr5B 91.176 102 6 3 231 331 82872333 82872432 4.840000e-28 135.0
38 TraesCS3B01G120700 chr5B 77.301 163 33 3 2032 2190 691578558 691578720 2.950000e-15 93.5
39 TraesCS3B01G120700 chr5B 86.667 75 9 1 2134 2208 637111774 637111701 6.400000e-12 82.4
40 TraesCS3B01G120700 chr5B 76.596 141 32 1 2048 2187 691273014 691273154 2.980000e-10 76.8
41 TraesCS3B01G120700 chr2B 90.385 104 7 3 245 347 250267228 250267329 1.740000e-27 134.0
42 TraesCS3B01G120700 chr2B 87.611 113 10 4 244 353 785746758 785746869 8.100000e-26 128.0
43 TraesCS3B01G120700 chrUn 97.959 49 1 0 1 49 245880 245928 4.940000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G120700 chr3B 90857264 90860049 2785 False 2347.000000 3589 100.000000 1 2786 2 chr3B.!!$F2 2785
1 TraesCS3B01G120700 chr3D 58080003 58081897 1894 False 893.333333 1953 94.147333 50 2202 3 chr3D.!!$F1 2152
2 TraesCS3B01G120700 chr3A 80425756 80426297 541 True 850.000000 850 95.018000 2202 2741 1 chr3A.!!$R1 539
3 TraesCS3B01G120700 chr3A 66907184 66909069 1885 False 820.666667 1842 91.230667 50 2202 3 chr3A.!!$F2 2152
4 TraesCS3B01G120700 chr5A 483276070 483276610 540 True 854.000000 854 95.194000 2202 2741 1 chr5A.!!$R1 539
5 TraesCS3B01G120700 chr2A 90419661 90420204 543 False 854.000000 854 95.037000 2199 2741 1 chr2A.!!$F1 542
6 TraesCS3B01G120700 chr2A 757573714 757574254 540 True 854.000000 854 95.194000 2202 2741 1 chr2A.!!$R1 539
7 TraesCS3B01G120700 chr6A 502373198 502373737 539 True 852.000000 852 95.185000 2202 2740 1 chr6A.!!$R1 538
8 TraesCS3B01G120700 chr6A 570390366 570390906 540 True 848.000000 848 95.009000 2202 2741 1 chr6A.!!$R2 539
9 TraesCS3B01G120700 chr7D 534470980 534471520 540 False 848.000000 848 95.009000 2202 2741 1 chr7D.!!$F1 539
10 TraesCS3B01G120700 chr4D 313597234 313597774 540 True 848.000000 848 95.009000 2202 2741 1 chr4D.!!$R2 539
11 TraesCS3B01G120700 chr1A 377649034 377649574 540 True 848.000000 848 95.009000 2202 2741 1 chr1A.!!$R2 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.179225 GATGTTAACGCCGCACACTG 60.179 55.000 0.26 0.0 0.0 3.66 F
22 23 0.882927 ATGTTAACGCCGCACACTGT 60.883 50.000 0.26 0.0 0.0 3.55 F
961 974 1.003355 CATCGAGTTGCACCCCACT 60.003 57.895 0.00 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1015 1029 1.423395 GACAGAAGGAGCACAAGTCG 58.577 55.000 0.0 0.0 0.00 4.18 R
1554 1568 1.973812 GGGCAGGAGCACCTTGTTC 60.974 63.158 0.0 0.0 45.36 3.18 R
2633 2681 0.031585 GTGTGGCGGAGATGCGTATA 59.968 55.000 0.0 0.0 35.06 1.47 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.737601 GTGATGTTAACGCCGCAC 57.262 55.556 0.26 3.06 0.00 5.34
18 19 1.863491 GTGATGTTAACGCCGCACA 59.137 52.632 0.26 0.00 0.00 4.57
19 20 0.452122 GTGATGTTAACGCCGCACAC 60.452 55.000 0.26 1.84 0.00 3.82
20 21 0.601576 TGATGTTAACGCCGCACACT 60.602 50.000 0.26 0.00 0.00 3.55
21 22 0.179225 GATGTTAACGCCGCACACTG 60.179 55.000 0.26 0.00 0.00 3.66
22 23 0.882927 ATGTTAACGCCGCACACTGT 60.883 50.000 0.26 0.00 0.00 3.55
23 24 1.083015 GTTAACGCCGCACACTGTG 60.083 57.895 6.19 6.19 36.51 3.66
24 25 1.521906 TTAACGCCGCACACTGTGT 60.522 52.632 7.80 7.80 35.75 3.72
32 33 3.028130 CACACTGTGTGCAGCAGG 58.972 61.111 26.02 2.98 46.30 4.85
33 34 2.903855 ACACTGTGTGCAGCAGGC 60.904 61.111 13.50 0.00 46.30 4.85
34 35 3.667282 CACTGTGTGCAGCAGGCC 61.667 66.667 18.80 0.00 46.30 5.19
35 36 4.193893 ACTGTGTGCAGCAGGCCA 62.194 61.111 18.80 0.00 46.30 5.36
36 37 2.675423 CTGTGTGCAGCAGGCCAT 60.675 61.111 5.01 0.00 43.89 4.40
37 38 2.674033 TGTGTGCAGCAGGCCATC 60.674 61.111 5.01 0.00 43.89 3.51
38 39 2.674033 GTGTGCAGCAGGCCATCA 60.674 61.111 5.01 0.00 43.89 3.07
39 40 2.674033 TGTGCAGCAGGCCATCAC 60.674 61.111 5.01 5.72 43.89 3.06
40 41 3.446570 GTGCAGCAGGCCATCACC 61.447 66.667 5.01 0.00 43.89 4.02
41 42 3.969119 TGCAGCAGGCCATCACCA 61.969 61.111 5.01 0.00 43.89 4.17
42 43 3.138798 GCAGCAGGCCATCACCAG 61.139 66.667 5.01 0.00 36.11 4.00
43 44 2.672908 CAGCAGGCCATCACCAGA 59.327 61.111 5.01 0.00 0.00 3.86
44 45 1.748122 CAGCAGGCCATCACCAGAC 60.748 63.158 5.01 0.00 0.00 3.51
45 46 2.439156 GCAGGCCATCACCAGACC 60.439 66.667 5.01 0.00 0.00 3.85
46 47 2.976490 GCAGGCCATCACCAGACCT 61.976 63.158 5.01 0.00 0.00 3.85
47 48 1.077930 CAGGCCATCACCAGACCTG 60.078 63.158 5.01 0.00 41.78 4.00
48 49 1.229625 AGGCCATCACCAGACCTGA 60.230 57.895 5.01 0.00 0.00 3.86
76 77 1.391157 AAAAGCTCGCTGCCCAAACA 61.391 50.000 0.00 0.00 44.23 2.83
77 78 1.391157 AAAGCTCGCTGCCCAAACAA 61.391 50.000 0.00 0.00 44.23 2.83
97 98 6.515272 ACAATTATTTCAGGTCGAATGCTT 57.485 33.333 0.00 0.00 32.32 3.91
247 256 6.241207 TGCACTTTTCAGCTAATCAACTAC 57.759 37.500 0.00 0.00 0.00 2.73
248 257 5.997746 TGCACTTTTCAGCTAATCAACTACT 59.002 36.000 0.00 0.00 0.00 2.57
249 258 6.147821 TGCACTTTTCAGCTAATCAACTACTC 59.852 38.462 0.00 0.00 0.00 2.59
250 259 6.402658 GCACTTTTCAGCTAATCAACTACTCC 60.403 42.308 0.00 0.00 0.00 3.85
251 260 6.092807 CACTTTTCAGCTAATCAACTACTCCC 59.907 42.308 0.00 0.00 0.00 4.30
252 261 6.013293 ACTTTTCAGCTAATCAACTACTCCCT 60.013 38.462 0.00 0.00 0.00 4.20
253 262 5.599999 TTCAGCTAATCAACTACTCCCTC 57.400 43.478 0.00 0.00 0.00 4.30
254 263 3.961408 TCAGCTAATCAACTACTCCCTCC 59.039 47.826 0.00 0.00 0.00 4.30
255 264 2.959707 AGCTAATCAACTACTCCCTCCG 59.040 50.000 0.00 0.00 0.00 4.63
256 265 2.694109 GCTAATCAACTACTCCCTCCGT 59.306 50.000 0.00 0.00 0.00 4.69
257 266 3.132467 GCTAATCAACTACTCCCTCCGTT 59.868 47.826 0.00 0.00 0.00 4.44
258 267 4.382793 GCTAATCAACTACTCCCTCCGTTT 60.383 45.833 0.00 0.00 0.00 3.60
259 268 3.889520 ATCAACTACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
260 269 2.600790 TCAACTACTCCCTCCGTTTCA 58.399 47.619 0.00 0.00 0.00 2.69
261 270 2.967201 TCAACTACTCCCTCCGTTTCAA 59.033 45.455 0.00 0.00 0.00 2.69
262 271 3.388676 TCAACTACTCCCTCCGTTTCAAA 59.611 43.478 0.00 0.00 0.00 2.69
263 272 4.131596 CAACTACTCCCTCCGTTTCAAAA 58.868 43.478 0.00 0.00 0.00 2.44
264 273 4.635699 ACTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
265 274 5.750352 ACTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
266 275 5.731591 ACTACTCCCTCCGTTTCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
267 276 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
268 277 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
269 278 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
270 279 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
271 280 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
272 281 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
273 282 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
274 283 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
275 284 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
276 285 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
277 286 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
278 287 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
279 288 8.076178 CCGTTTCAAAATAGATGACTCAACTTT 58.924 33.333 0.00 0.00 0.00 2.66
280 289 8.895845 CGTTTCAAAATAGATGACTCAACTTTG 58.104 33.333 0.00 0.00 0.00 2.77
281 290 9.736023 GTTTCAAAATAGATGACTCAACTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
322 331 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
323 332 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
324 333 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
325 334 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
326 335 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
327 336 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
328 337 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
329 338 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
330 339 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
331 340 6.363167 TCTATTTTGAAACGGAGGGAGTAA 57.637 37.500 0.00 0.00 0.00 2.24
382 391 4.718961 AGAACAAAACCAGCTCATGTAGT 58.281 39.130 0.00 0.00 0.00 2.73
383 392 5.865085 AGAACAAAACCAGCTCATGTAGTA 58.135 37.500 0.00 0.00 0.00 1.82
384 393 5.934625 AGAACAAAACCAGCTCATGTAGTAG 59.065 40.000 0.00 0.00 0.00 2.57
385 394 4.579869 ACAAAACCAGCTCATGTAGTAGG 58.420 43.478 0.00 0.00 0.00 3.18
399 408 4.693283 TGTAGTAGGAGTACAATGCATGC 58.307 43.478 11.82 11.82 31.55 4.06
470 479 2.086869 AGCTCAAAATCACCATCACCG 58.913 47.619 0.00 0.00 0.00 4.94
897 910 1.540367 TTCCCCGACCCAACCATCT 60.540 57.895 0.00 0.00 0.00 2.90
898 911 1.559065 TTCCCCGACCCAACCATCTC 61.559 60.000 0.00 0.00 0.00 2.75
899 912 2.590092 CCCGACCCAACCATCTCC 59.410 66.667 0.00 0.00 0.00 3.71
956 969 1.565156 TTGTCGCATCGAGTTGCACC 61.565 55.000 11.30 1.66 42.91 5.01
959 972 2.359850 GCATCGAGTTGCACCCCA 60.360 61.111 6.13 0.00 42.31 4.96
960 973 2.690778 GCATCGAGTTGCACCCCAC 61.691 63.158 6.13 0.00 42.31 4.61
961 974 1.003355 CATCGAGTTGCACCCCACT 60.003 57.895 0.00 0.00 0.00 4.00
962 975 1.003355 ATCGAGTTGCACCCCACTG 60.003 57.895 0.00 0.00 0.00 3.66
963 976 3.357079 CGAGTTGCACCCCACTGC 61.357 66.667 0.00 0.00 37.70 4.40
965 978 4.954970 AGTTGCACCCCACTGCCG 62.955 66.667 0.00 0.00 36.21 5.69
966 979 4.947147 GTTGCACCCCACTGCCGA 62.947 66.667 0.00 0.00 36.21 5.54
1554 1568 1.136984 GCTCGTCGTCTACCAGGTG 59.863 63.158 0.76 0.00 0.00 4.00
1634 1648 2.843545 GCCCACCAAGACCAAGGA 59.156 61.111 0.00 0.00 0.00 3.36
1659 1673 4.858200 CCTACGTCGACGGTCGCG 62.858 72.222 37.89 30.55 44.95 5.87
1757 1780 2.594592 GGTTCACGTGCTTGCCCT 60.595 61.111 11.67 0.00 0.00 5.19
1758 1781 2.617274 GGTTCACGTGCTTGCCCTC 61.617 63.158 11.67 0.00 0.00 4.30
1759 1782 2.281484 TTCACGTGCTTGCCCTCC 60.281 61.111 11.67 0.00 0.00 4.30
1909 1949 8.779303 TCGTTTGATTTGTTCTTATTTCAGCTA 58.221 29.630 0.00 0.00 0.00 3.32
1951 1993 4.832248 TGCTAGGGACATGTAAAGTGAAG 58.168 43.478 0.00 0.00 0.00 3.02
2067 2112 5.007921 ACGCATACATACGTACATACACTCA 59.992 40.000 0.00 0.00 41.48 3.41
2075 2121 3.635373 ACGTACATACACTCACCCTATGG 59.365 47.826 0.00 0.00 37.80 2.74
2086 2132 0.848735 ACCCTATGGATGCATGCACT 59.151 50.000 25.37 12.53 34.81 4.40
2100 2146 2.579201 CACTCACACCCTAGCCCG 59.421 66.667 0.00 0.00 0.00 6.13
2101 2147 3.391382 ACTCACACCCTAGCCCGC 61.391 66.667 0.00 0.00 0.00 6.13
2119 2166 0.380378 GCGAGCATCTTCGAGAGACT 59.620 55.000 0.00 0.00 43.03 3.24
2125 2172 2.421775 GCATCTTCGAGAGACTGAGTCA 59.578 50.000 15.86 0.00 41.84 3.41
2126 2173 3.119673 GCATCTTCGAGAGACTGAGTCAA 60.120 47.826 15.86 0.00 41.84 3.18
2163 2210 1.143183 ACGAAGTCACCACAAGCGT 59.857 52.632 0.00 0.00 29.74 5.07
2168 2215 1.069090 GTCACCACAAGCGTCTCCA 59.931 57.895 0.00 0.00 0.00 3.86
2173 2220 1.623811 ACCACAAGCGTCTCCATAGTT 59.376 47.619 0.00 0.00 0.00 2.24
2290 2338 2.293586 TGGGGTAGGCTAGAGGTGAAAT 60.294 50.000 0.00 0.00 0.00 2.17
2309 2357 2.509052 TCCATAAGATCTCGCAACCG 57.491 50.000 0.00 0.00 0.00 4.44
2317 2365 0.817654 ATCTCGCAACCGACTCATGA 59.182 50.000 0.00 0.00 38.82 3.07
2343 2391 2.295885 GCACATGGATAGCAAGCTTCT 58.704 47.619 0.00 0.00 0.00 2.85
2349 2397 2.295885 GGATAGCAAGCTTCTGTGCAT 58.704 47.619 10.57 2.57 43.42 3.96
2350 2398 2.686915 GGATAGCAAGCTTCTGTGCATT 59.313 45.455 10.57 0.00 43.42 3.56
2351 2399 3.129988 GGATAGCAAGCTTCTGTGCATTT 59.870 43.478 10.57 0.00 43.42 2.32
2362 2410 4.558226 TCTGTGCATTTCTGTCCATAGT 57.442 40.909 0.00 0.00 0.00 2.12
2457 2505 1.556911 GCCCTCTCTTGACATTCTCCA 59.443 52.381 0.00 0.00 0.00 3.86
2530 2578 0.770499 TGCCCAAACCATCTCAGACA 59.230 50.000 0.00 0.00 0.00 3.41
2548 2596 4.037208 CAGACAATGTTGGACAAGCTTCTT 59.963 41.667 0.00 0.00 0.00 2.52
2603 2651 9.040939 CGTATATCATCATTCTAGACTCGATCT 57.959 37.037 0.00 0.00 41.95 2.75
2616 2664 1.472878 CTCGATCTTTCCTCGTGTGGA 59.527 52.381 0.00 0.00 37.40 4.02
2701 2750 1.709147 GCCAACACTCAGCGCCATAG 61.709 60.000 2.29 0.95 0.00 2.23
2708 2757 3.118775 ACACTCAGCGCCATAGAACATTA 60.119 43.478 2.29 0.00 0.00 1.90
2741 2790 1.822990 CCGTCCTGTAGAACTTGCCTA 59.177 52.381 0.00 0.00 0.00 3.93
2742 2791 2.416972 CCGTCCTGTAGAACTTGCCTAC 60.417 54.545 0.00 0.00 37.57 3.18
2743 2792 2.416972 CGTCCTGTAGAACTTGCCTACC 60.417 54.545 0.00 0.00 36.54 3.18
2744 2793 2.565834 GTCCTGTAGAACTTGCCTACCA 59.434 50.000 0.00 0.00 36.54 3.25
2745 2794 2.565834 TCCTGTAGAACTTGCCTACCAC 59.434 50.000 0.00 0.00 36.54 4.16
2746 2795 2.567615 CCTGTAGAACTTGCCTACCACT 59.432 50.000 0.00 0.00 36.54 4.00
2747 2796 3.589988 CTGTAGAACTTGCCTACCACTG 58.410 50.000 0.00 0.00 36.54 3.66
2748 2797 3.236047 TGTAGAACTTGCCTACCACTGA 58.764 45.455 0.00 0.00 36.54 3.41
2749 2798 3.644265 TGTAGAACTTGCCTACCACTGAA 59.356 43.478 0.00 0.00 36.54 3.02
2750 2799 4.286032 TGTAGAACTTGCCTACCACTGAAT 59.714 41.667 0.00 0.00 36.54 2.57
2751 2800 3.679389 AGAACTTGCCTACCACTGAATG 58.321 45.455 0.00 0.00 0.00 2.67
2752 2801 3.327757 AGAACTTGCCTACCACTGAATGA 59.672 43.478 0.00 0.00 0.00 2.57
2753 2802 3.788227 ACTTGCCTACCACTGAATGAA 57.212 42.857 0.00 0.00 0.00 2.57
2754 2803 3.412386 ACTTGCCTACCACTGAATGAAC 58.588 45.455 0.00 0.00 0.00 3.18
2755 2804 3.181445 ACTTGCCTACCACTGAATGAACA 60.181 43.478 0.00 0.00 0.00 3.18
2756 2805 3.719268 TGCCTACCACTGAATGAACAT 57.281 42.857 0.00 0.00 0.00 2.71
2757 2806 3.609853 TGCCTACCACTGAATGAACATC 58.390 45.455 0.00 0.00 0.00 3.06
2758 2807 2.609459 GCCTACCACTGAATGAACATCG 59.391 50.000 0.00 0.00 0.00 3.84
2759 2808 3.861840 CCTACCACTGAATGAACATCGT 58.138 45.455 0.00 0.00 0.00 3.73
2760 2809 3.865745 CCTACCACTGAATGAACATCGTC 59.134 47.826 0.00 0.00 0.00 4.20
2761 2810 2.337583 ACCACTGAATGAACATCGTCG 58.662 47.619 0.00 0.00 0.00 5.12
2762 2811 2.029380 ACCACTGAATGAACATCGTCGA 60.029 45.455 0.00 0.00 0.00 4.20
2763 2812 2.993220 CCACTGAATGAACATCGTCGAA 59.007 45.455 0.00 0.00 0.00 3.71
2764 2813 3.431912 CCACTGAATGAACATCGTCGAAA 59.568 43.478 0.00 0.00 0.00 3.46
2765 2814 4.084066 CCACTGAATGAACATCGTCGAAAA 60.084 41.667 0.00 0.00 0.00 2.29
2766 2815 5.439828 CACTGAATGAACATCGTCGAAAAA 58.560 37.500 0.00 0.00 0.00 1.94
2767 2816 5.336990 CACTGAATGAACATCGTCGAAAAAC 59.663 40.000 0.00 0.00 0.00 2.43
2768 2817 4.778904 TGAATGAACATCGTCGAAAAACC 58.221 39.130 0.00 0.00 0.00 3.27
2769 2818 4.513692 TGAATGAACATCGTCGAAAAACCT 59.486 37.500 0.00 0.00 0.00 3.50
2770 2819 3.870723 TGAACATCGTCGAAAAACCTG 57.129 42.857 0.00 0.00 0.00 4.00
2771 2820 3.459145 TGAACATCGTCGAAAAACCTGA 58.541 40.909 0.00 0.00 0.00 3.86
2772 2821 3.872182 TGAACATCGTCGAAAAACCTGAA 59.128 39.130 0.00 0.00 0.00 3.02
2773 2822 4.333095 TGAACATCGTCGAAAAACCTGAAA 59.667 37.500 0.00 0.00 0.00 2.69
2774 2823 5.008217 TGAACATCGTCGAAAAACCTGAAAT 59.992 36.000 0.00 0.00 0.00 2.17
2775 2824 6.203145 TGAACATCGTCGAAAAACCTGAAATA 59.797 34.615 0.00 0.00 0.00 1.40
2776 2825 6.548441 ACATCGTCGAAAAACCTGAAATAA 57.452 33.333 0.00 0.00 0.00 1.40
2777 2826 6.599437 ACATCGTCGAAAAACCTGAAATAAG 58.401 36.000 0.00 0.00 0.00 1.73
2778 2827 6.204108 ACATCGTCGAAAAACCTGAAATAAGT 59.796 34.615 0.00 0.00 0.00 2.24
2779 2828 6.219302 TCGTCGAAAAACCTGAAATAAGTC 57.781 37.500 0.00 0.00 0.00 3.01
2780 2829 5.987347 TCGTCGAAAAACCTGAAATAAGTCT 59.013 36.000 0.00 0.00 0.00 3.24
2781 2830 7.147312 TCGTCGAAAAACCTGAAATAAGTCTA 58.853 34.615 0.00 0.00 0.00 2.59
2782 2831 7.327761 TCGTCGAAAAACCTGAAATAAGTCTAG 59.672 37.037 0.00 0.00 0.00 2.43
2783 2832 7.327761 CGTCGAAAAACCTGAAATAAGTCTAGA 59.672 37.037 0.00 0.00 0.00 2.43
2784 2833 8.985805 GTCGAAAAACCTGAAATAAGTCTAGAA 58.014 33.333 0.00 0.00 0.00 2.10
2785 2834 9.550406 TCGAAAAACCTGAAATAAGTCTAGAAA 57.450 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.452122 GTGTGCGGCGTTAACATCAC 60.452 55.000 9.37 6.69 0.00 3.06
2 3 0.179225 CAGTGTGCGGCGTTAACATC 60.179 55.000 9.37 6.41 0.00 3.06
3 4 0.882927 ACAGTGTGCGGCGTTAACAT 60.883 50.000 9.37 0.00 0.00 2.71
4 5 1.521906 ACAGTGTGCGGCGTTAACA 60.522 52.632 9.37 8.46 0.00 2.41
5 6 1.083015 CACAGTGTGCGGCGTTAAC 60.083 57.895 10.97 5.64 0.00 2.01
6 7 1.521906 ACACAGTGTGCGGCGTTAA 60.522 52.632 23.21 0.00 36.98 2.01
7 8 2.107343 ACACAGTGTGCGGCGTTA 59.893 55.556 23.21 0.00 36.98 3.18
8 9 3.572539 CACACAGTGTGCGGCGTT 61.573 61.111 23.21 0.00 41.89 4.84
16 17 2.903855 GCCTGCTGCACACAGTGT 60.904 61.111 0.00 0.00 46.30 3.55
17 18 3.667282 GGCCTGCTGCACACAGTG 61.667 66.667 0.00 0.00 46.30 3.66
18 19 3.502621 ATGGCCTGCTGCACACAGT 62.503 57.895 3.32 0.00 46.30 3.55
20 21 2.674033 GATGGCCTGCTGCACACA 60.674 61.111 3.32 0.00 43.89 3.72
21 22 2.674033 TGATGGCCTGCTGCACAC 60.674 61.111 3.32 0.00 43.89 3.82
22 23 2.674033 GTGATGGCCTGCTGCACA 60.674 61.111 3.32 0.00 43.89 4.57
23 24 3.446570 GGTGATGGCCTGCTGCAC 61.447 66.667 3.32 4.92 43.89 4.57
24 25 3.931190 CTGGTGATGGCCTGCTGCA 62.931 63.158 3.32 0.88 43.89 4.41
25 26 3.138798 CTGGTGATGGCCTGCTGC 61.139 66.667 3.32 0.00 40.16 5.25
26 27 1.748122 GTCTGGTGATGGCCTGCTG 60.748 63.158 3.32 0.00 0.00 4.41
27 28 2.673523 GTCTGGTGATGGCCTGCT 59.326 61.111 3.32 0.00 0.00 4.24
28 29 2.439156 GGTCTGGTGATGGCCTGC 60.439 66.667 3.32 0.00 0.00 4.85
29 30 1.077930 CAGGTCTGGTGATGGCCTG 60.078 63.158 3.32 0.00 40.38 4.85
30 31 0.622738 ATCAGGTCTGGTGATGGCCT 60.623 55.000 3.32 0.00 33.24 5.19
31 32 0.179034 GATCAGGTCTGGTGATGGCC 60.179 60.000 0.00 0.00 34.69 5.36
32 33 0.835941 AGATCAGGTCTGGTGATGGC 59.164 55.000 0.00 0.00 34.69 4.40
33 34 4.701765 CTTAAGATCAGGTCTGGTGATGG 58.298 47.826 0.00 0.00 37.23 3.51
34 35 4.125703 GCTTAAGATCAGGTCTGGTGATG 58.874 47.826 6.67 0.00 37.23 3.07
35 36 3.776969 TGCTTAAGATCAGGTCTGGTGAT 59.223 43.478 6.67 0.00 37.23 3.06
36 37 3.173151 TGCTTAAGATCAGGTCTGGTGA 58.827 45.455 6.67 0.00 37.23 4.02
37 38 3.616956 TGCTTAAGATCAGGTCTGGTG 57.383 47.619 6.67 0.00 37.23 4.17
38 39 4.640771 TTTGCTTAAGATCAGGTCTGGT 57.359 40.909 6.67 0.00 37.23 4.00
39 40 4.142513 GCTTTTGCTTAAGATCAGGTCTGG 60.143 45.833 6.67 0.00 43.35 3.86
40 41 4.979388 GCTTTTGCTTAAGATCAGGTCTG 58.021 43.478 6.67 0.00 43.35 3.51
76 77 5.679638 GCCAAGCATTCGACCTGAAATAATT 60.680 40.000 0.00 0.00 40.71 1.40
77 78 4.202050 GCCAAGCATTCGACCTGAAATAAT 60.202 41.667 0.00 0.00 40.71 1.28
142 143 6.434028 TGGTAACTGAAAGCTTGATGCTATTT 59.566 34.615 0.00 0.00 45.89 1.40
145 146 4.905429 TGGTAACTGAAAGCTTGATGCTA 58.095 39.130 0.00 0.00 45.89 3.49
247 256 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
248 257 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
249 258 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
250 259 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
251 260 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
252 261 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
253 262 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
254 263 8.895845 CAAAGTTGAGTCATCTATTTTGAAACG 58.104 33.333 4.14 0.00 38.91 3.60
255 264 9.736023 ACAAAGTTGAGTCATCTATTTTGAAAC 57.264 29.630 15.99 0.00 38.91 2.78
296 305 8.076178 CCGTTTCAAAATAGATGACTCAACTTT 58.924 33.333 0.00 0.00 0.00 2.66
297 306 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
298 307 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
299 308 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
300 309 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
301 310 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
302 311 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
303 312 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
304 313 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
305 314 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
306 315 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
307 316 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
308 317 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
309 318 8.726870 TTATTACTCCCTCCGTTTCAAAATAG 57.273 34.615 0.00 0.00 0.00 1.73
311 320 9.689501 TTATTATTACTCCCTCCGTTTCAAAAT 57.310 29.630 0.00 0.00 0.00 1.82
312 321 9.689501 ATTATTATTACTCCCTCCGTTTCAAAA 57.310 29.630 0.00 0.00 0.00 2.44
314 323 9.768662 GTATTATTATTACTCCCTCCGTTTCAA 57.231 33.333 0.00 0.00 0.00 2.69
315 324 9.151177 AGTATTATTATTACTCCCTCCGTTTCA 57.849 33.333 0.00 0.00 0.00 2.69
382 391 3.479489 CATGGCATGCATTGTACTCCTA 58.521 45.455 21.36 0.00 0.00 2.94
383 392 2.304092 CATGGCATGCATTGTACTCCT 58.696 47.619 21.36 0.00 0.00 3.69
384 393 1.338973 CCATGGCATGCATTGTACTCC 59.661 52.381 22.02 0.00 0.00 3.85
385 394 2.300433 TCCATGGCATGCATTGTACTC 58.700 47.619 22.02 0.00 0.00 2.59
399 408 1.273327 GAGCACCTGGTTTTTCCATGG 59.727 52.381 4.97 4.97 46.12 3.66
470 479 1.135575 CCTTTTGACAATCGGAGCTGC 60.136 52.381 0.00 0.00 0.00 5.25
514 523 3.055963 CAGCAACTCTCCTCAAGATCTGT 60.056 47.826 0.00 0.00 32.19 3.41
856 869 1.406614 GGAGTGAGGTGGAAGCATCTG 60.407 57.143 0.00 0.00 36.26 2.90
897 910 0.103572 GCGTGGCTTATAACGAGGGA 59.896 55.000 0.00 0.00 42.32 4.20
898 911 0.878961 GGCGTGGCTTATAACGAGGG 60.879 60.000 0.00 0.00 42.32 4.30
899 912 0.179094 TGGCGTGGCTTATAACGAGG 60.179 55.000 0.00 0.00 42.32 4.63
956 969 4.007644 TGCAGACTCGGCAGTGGG 62.008 66.667 0.00 0.00 36.11 4.61
959 972 3.559657 GACGTGCAGACTCGGCAGT 62.560 63.158 3.88 5.25 42.85 4.40
960 973 1.923227 TAGACGTGCAGACTCGGCAG 61.923 60.000 3.88 2.27 43.25 4.85
961 974 1.969589 TAGACGTGCAGACTCGGCA 60.970 57.895 2.93 0.00 43.25 5.69
962 975 1.514443 GTAGACGTGCAGACTCGGC 60.514 63.158 0.00 0.00 41.13 5.54
963 976 1.226046 CGTAGACGTGCAGACTCGG 60.226 63.158 0.00 0.00 37.11 4.63
983 996 1.067142 CCATGGTGTGTAGTACGTGCT 60.067 52.381 11.87 11.87 0.00 4.40
984 997 1.355971 CCATGGTGTGTAGTACGTGC 58.644 55.000 2.57 0.00 0.00 5.34
985 998 1.337354 TGCCATGGTGTGTAGTACGTG 60.337 52.381 14.67 0.00 0.00 4.49
986 999 0.970640 TGCCATGGTGTGTAGTACGT 59.029 50.000 14.67 0.00 0.00 3.57
987 1000 1.640428 CTGCCATGGTGTGTAGTACG 58.360 55.000 14.67 0.00 0.00 3.67
988 1001 1.369625 GCTGCCATGGTGTGTAGTAC 58.630 55.000 14.67 0.00 0.00 2.73
989 1002 0.251916 GGCTGCCATGGTGTGTAGTA 59.748 55.000 15.17 0.00 0.00 1.82
990 1003 1.002134 GGCTGCCATGGTGTGTAGT 60.002 57.895 15.17 0.00 0.00 2.73
991 1004 0.394762 ATGGCTGCCATGGTGTGTAG 60.395 55.000 32.12 5.75 43.39 2.74
992 1005 1.690616 ATGGCTGCCATGGTGTGTA 59.309 52.632 32.12 2.30 43.39 2.90
993 1006 2.441959 ATGGCTGCCATGGTGTGT 59.558 55.556 32.12 8.22 43.39 3.72
1015 1029 1.423395 GACAGAAGGAGCACAAGTCG 58.577 55.000 0.00 0.00 0.00 4.18
1554 1568 1.973812 GGGCAGGAGCACCTTGTTC 60.974 63.158 0.00 0.00 45.36 3.18
1868 1905 4.487019 TCAAACGAAAAAGACCAACAACC 58.513 39.130 0.00 0.00 0.00 3.77
1870 1907 6.647067 ACAAATCAAACGAAAAAGACCAACAA 59.353 30.769 0.00 0.00 0.00 2.83
1951 1993 4.970662 TGTGACTCCCGTAATAGTACAC 57.029 45.455 0.78 0.00 0.00 2.90
2067 2112 0.848735 AGTGCATGCATCCATAGGGT 59.151 50.000 25.64 0.00 34.93 4.34
2075 2121 0.679002 AGGGTGTGAGTGCATGCATC 60.679 55.000 25.64 20.80 0.00 3.91
2100 2146 0.380378 AGTCTCTCGAAGATGCTCGC 59.620 55.000 0.00 0.00 38.73 5.03
2101 2147 1.668237 TCAGTCTCTCGAAGATGCTCG 59.332 52.381 0.00 0.00 40.25 5.03
2119 2166 6.741992 ATCTCAAAATAATGCGTTGACTCA 57.258 33.333 0.08 0.00 0.00 3.41
2125 2172 6.176975 TCGTCAATCTCAAAATAATGCGTT 57.823 33.333 0.00 0.00 0.00 4.84
2126 2173 5.794687 TCGTCAATCTCAAAATAATGCGT 57.205 34.783 0.00 0.00 0.00 5.24
2163 2210 1.475280 CGTTCCCGTCAACTATGGAGA 59.525 52.381 0.00 0.00 36.17 3.71
2185 2232 5.042463 TGTTGTTCATTCAGTGGTAGGAA 57.958 39.130 0.00 0.00 0.00 3.36
2290 2338 2.028876 TCGGTTGCGAGATCTTATGGA 58.971 47.619 0.00 0.00 0.00 3.41
2309 2357 2.277969 CATGTGCCAGAGTCATGAGTC 58.722 52.381 20.95 20.95 40.64 3.36
2317 2365 1.206878 TGCTATCCATGTGCCAGAGT 58.793 50.000 0.00 0.00 0.00 3.24
2343 2391 4.635765 GCTAACTATGGACAGAAATGCACA 59.364 41.667 0.00 0.00 0.00 4.57
2349 2397 6.173339 CCAAAGAGCTAACTATGGACAGAAA 58.827 40.000 0.00 0.00 0.00 2.52
2350 2398 5.248477 ACCAAAGAGCTAACTATGGACAGAA 59.752 40.000 9.66 0.00 31.71 3.02
2351 2399 4.777896 ACCAAAGAGCTAACTATGGACAGA 59.222 41.667 9.66 0.00 31.71 3.41
2362 2410 5.755409 TTGGAGTATCACCAAAGAGCTAA 57.245 39.130 0.00 0.00 43.22 3.09
2457 2505 2.431942 CGGACGGCTAAAGCGTGT 60.432 61.111 0.00 1.88 43.26 4.49
2530 2578 5.596836 TGAAAAGAAGCTTGTCCAACATT 57.403 34.783 2.10 0.00 0.00 2.71
2548 2596 2.685106 TGGGGTAGCACCAATTGAAA 57.315 45.000 7.12 0.00 41.02 2.69
2616 2664 4.991056 GCGTATATTGAGATGGATGTGTGT 59.009 41.667 0.00 0.00 0.00 3.72
2633 2681 0.031585 GTGTGGCGGAGATGCGTATA 59.968 55.000 0.00 0.00 35.06 1.47
2701 2750 1.329599 GCGGTTCGACCCATAATGTTC 59.670 52.381 0.00 0.00 33.75 3.18
2708 2757 4.446413 GACGGCGGTTCGACCCAT 62.446 66.667 13.24 0.00 33.75 4.00
2741 2790 2.029380 TCGACGATGTTCATTCAGTGGT 60.029 45.455 0.00 0.00 0.00 4.16
2742 2791 2.606108 TCGACGATGTTCATTCAGTGG 58.394 47.619 0.00 0.00 0.00 4.00
2743 2792 4.645667 TTTCGACGATGTTCATTCAGTG 57.354 40.909 0.00 0.00 0.00 3.66
2744 2793 5.440685 GTTTTTCGACGATGTTCATTCAGT 58.559 37.500 0.00 0.00 0.00 3.41
2745 2794 4.846137 GGTTTTTCGACGATGTTCATTCAG 59.154 41.667 0.00 0.00 0.00 3.02
2746 2795 4.513692 AGGTTTTTCGACGATGTTCATTCA 59.486 37.500 0.00 0.00 0.00 2.57
2747 2796 4.846137 CAGGTTTTTCGACGATGTTCATTC 59.154 41.667 0.00 0.00 0.00 2.67
2748 2797 4.513692 TCAGGTTTTTCGACGATGTTCATT 59.486 37.500 0.00 0.00 0.00 2.57
2749 2798 4.062293 TCAGGTTTTTCGACGATGTTCAT 58.938 39.130 0.00 0.00 0.00 2.57
2750 2799 3.459145 TCAGGTTTTTCGACGATGTTCA 58.541 40.909 0.00 0.00 0.00 3.18
2751 2800 4.461992 TTCAGGTTTTTCGACGATGTTC 57.538 40.909 0.00 0.00 0.00 3.18
2752 2801 4.886247 TTTCAGGTTTTTCGACGATGTT 57.114 36.364 0.00 0.00 0.00 2.71
2753 2802 6.204108 ACTTATTTCAGGTTTTTCGACGATGT 59.796 34.615 0.00 0.00 0.00 3.06
2754 2803 6.599437 ACTTATTTCAGGTTTTTCGACGATG 58.401 36.000 0.00 0.00 0.00 3.84
2755 2804 6.649557 AGACTTATTTCAGGTTTTTCGACGAT 59.350 34.615 0.00 0.00 0.00 3.73
2756 2805 5.987347 AGACTTATTTCAGGTTTTTCGACGA 59.013 36.000 0.00 0.00 0.00 4.20
2757 2806 6.224420 AGACTTATTTCAGGTTTTTCGACG 57.776 37.500 0.00 0.00 0.00 5.12
2758 2807 8.530269 TCTAGACTTATTTCAGGTTTTTCGAC 57.470 34.615 0.00 0.00 0.00 4.20
2759 2808 9.550406 TTTCTAGACTTATTTCAGGTTTTTCGA 57.450 29.630 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.