Multiple sequence alignment - TraesCS3B01G120200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G120200 chr3B 100.000 3123 0 0 1 3123 90160439 90157317 0.000000e+00 5768.0
1 TraesCS3B01G120200 chr3B 93.088 1606 58 25 592 2174 90208565 90210140 0.000000e+00 2302.0
2 TraesCS3B01G120200 chr3B 89.941 507 45 5 2222 2724 26591191 26591695 0.000000e+00 649.0
3 TraesCS3B01G120200 chr3B 86.957 460 54 5 2175 2629 31266465 31266923 2.150000e-141 512.0
4 TraesCS3B01G120200 chr3B 93.155 336 14 6 2724 3052 90210132 90210465 4.680000e-133 484.0
5 TraesCS3B01G120200 chr3A 86.166 1612 120 48 610 2174 66273139 66271584 0.000000e+00 1646.0
6 TraesCS3B01G120200 chr3A 87.778 900 68 23 1286 2169 66363075 66363948 0.000000e+00 1014.0
7 TraesCS3B01G120200 chr3A 87.624 404 23 14 2733 3123 66363942 66364331 7.950000e-121 444.0
8 TraesCS3B01G120200 chr3A 86.118 425 31 12 883 1302 66362652 66363053 1.720000e-117 433.0
9 TraesCS3B01G120200 chr3A 86.197 355 29 13 2772 3123 66367703 66368040 1.770000e-97 366.0
10 TraesCS3B01G120200 chr3A 82.184 348 26 19 2779 3123 66271557 66271243 1.850000e-67 267.0
11 TraesCS3B01G120200 chr3A 84.959 246 14 14 610 840 66362394 66362631 8.710000e-56 228.0
12 TraesCS3B01G120200 chr3A 91.837 147 10 2 344 488 530498315 530498169 1.470000e-48 204.0
13 TraesCS3B01G120200 chr3A 100.000 37 0 0 2729 2765 66271587 66271551 5.590000e-08 69.4
14 TraesCS3B01G120200 chr3D 85.043 1638 134 47 596 2174 57179529 57177944 0.000000e+00 1565.0
15 TraesCS3B01G120200 chr3D 85.922 1236 113 30 972 2171 57335315 57336525 0.000000e+00 1262.0
16 TraesCS3B01G120200 chr3D 90.667 750 43 13 1137 1867 57325125 57325866 0.000000e+00 972.0
17 TraesCS3B01G120200 chr3D 86.932 880 64 21 587 1439 57328119 57328974 0.000000e+00 941.0
18 TraesCS3B01G120200 chr3D 90.294 340 20 8 2724 3052 57336520 57336857 1.720000e-117 433.0
19 TraesCS3B01G120200 chr3D 87.258 361 21 11 587 929 57334970 57335323 3.780000e-104 388.0
20 TraesCS3B01G120200 chr3D 86.501 363 24 11 731 1078 57324770 57325122 2.940000e-100 375.0
21 TraesCS3B01G120200 chr3D 90.157 254 15 5 1322 1571 57330383 57330630 3.890000e-84 322.0
22 TraesCS3B01G120200 chr3D 88.933 253 20 4 1518 1769 57330838 57331083 3.910000e-79 305.0
23 TraesCS3B01G120200 chr3D 93.651 189 4 3 2724 2904 57177952 57177764 3.070000e-70 276.0
24 TraesCS3B01G120200 chr3D 85.135 222 25 6 93 313 57327860 57328074 1.460000e-53 220.0
25 TraesCS3B01G120200 chr3D 84.783 184 24 3 333 513 125779603 125779421 6.880000e-42 182.0
26 TraesCS3B01G120200 chr3D 87.919 149 14 3 589 737 57320066 57320210 4.140000e-39 172.0
27 TraesCS3B01G120200 chr3D 92.208 77 4 2 1689 1764 57331083 57331158 1.180000e-19 108.0
28 TraesCS3B01G120200 chr3D 91.667 72 4 1 3008 3079 57177707 57177638 7.130000e-17 99.0
29 TraesCS3B01G120200 chr6B 97.653 554 8 3 2172 2725 700901207 700901755 0.000000e+00 946.0
30 TraesCS3B01G120200 chr6B 94.231 52 2 1 518 569 290221351 290221301 9.290000e-11 78.7
31 TraesCS3B01G120200 chr4A 91.320 553 47 1 2175 2726 31908450 31907898 0.000000e+00 754.0
32 TraesCS3B01G120200 chr4A 90.614 554 51 1 2173 2725 646633334 646633887 0.000000e+00 734.0
33 TraesCS3B01G120200 chr4A 90.054 553 41 10 2175 2724 713895342 713895883 0.000000e+00 704.0
34 TraesCS3B01G120200 chr2A 89.130 552 56 3 2175 2725 6005255 6005803 0.000000e+00 684.0
35 TraesCS3B01G120200 chr2A 86.207 58 7 1 519 575 695477015 695476958 9.350000e-06 62.1
36 TraesCS3B01G120200 chr1B 87.612 557 48 11 2175 2729 597401364 597401901 7.350000e-176 627.0
37 TraesCS3B01G120200 chr1B 91.497 294 25 0 2174 2467 152517497 152517204 3.750000e-109 405.0
38 TraesCS3B01G120200 chr1B 88.000 50 6 0 465 514 453344517 453344468 3.360000e-05 60.2
39 TraesCS3B01G120200 chr7D 91.411 326 20 7 2406 2725 629571622 629571945 1.030000e-119 440.0
40 TraesCS3B01G120200 chr7D 86.111 180 17 6 336 513 430095583 430095756 1.480000e-43 187.0
41 TraesCS3B01G120200 chr7A 81.978 455 74 8 2276 2724 66781640 66781188 2.270000e-101 379.0
42 TraesCS3B01G120200 chr7A 96.078 51 2 0 518 568 481190013 481189963 2.000000e-12 84.2
43 TraesCS3B01G120200 chr7A 89.831 59 5 1 518 575 734297450 734297392 1.200000e-09 75.0
44 TraesCS3B01G120200 chr1A 87.912 182 18 3 335 513 77277197 77277017 8.770000e-51 211.0
45 TraesCS3B01G120200 chr5A 89.697 165 15 1 345 507 611541329 611541493 3.160000e-50 209.0
46 TraesCS3B01G120200 chr6D 91.892 148 10 1 343 488 109240484 109240337 4.080000e-49 206.0
47 TraesCS3B01G120200 chr6D 90.000 50 5 0 519 568 343130145 343130194 7.230000e-07 65.8
48 TraesCS3B01G120200 chr1D 91.275 149 11 1 342 488 118931644 118931496 5.280000e-48 202.0
49 TraesCS3B01G120200 chr5D 90.789 152 11 2 339 488 3616474 3616624 1.900000e-47 200.0
50 TraesCS3B01G120200 chr4B 87.135 171 19 2 345 513 399269481 399269650 1.140000e-44 191.0
51 TraesCS3B01G120200 chr4B 98.039 51 1 0 518 568 375396187 375396137 4.290000e-14 89.8
52 TraesCS3B01G120200 chr4B 91.228 57 4 1 519 574 88394788 88394732 3.340000e-10 76.8
53 TraesCS3B01G120200 chr4B 74.566 173 36 8 345 513 312785184 312785352 5.590000e-08 69.4
54 TraesCS3B01G120200 chr7B 98.039 51 1 0 518 568 539687339 539687389 4.290000e-14 89.8
55 TraesCS3B01G120200 chr5B 92.000 50 4 0 519 568 35972655 35972606 1.550000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G120200 chr3B 90157317 90160439 3122 True 5768.000000 5768 100.000000 1 3123 1 chr3B.!!$R1 3122
1 TraesCS3B01G120200 chr3B 90208565 90210465 1900 False 1393.000000 2302 93.121500 592 3052 2 chr3B.!!$F3 2460
2 TraesCS3B01G120200 chr3B 26591191 26591695 504 False 649.000000 649 89.941000 2222 2724 1 chr3B.!!$F1 502
3 TraesCS3B01G120200 chr3A 66271243 66273139 1896 True 660.800000 1646 89.450000 610 3123 3 chr3A.!!$R2 2513
4 TraesCS3B01G120200 chr3A 66362394 66368040 5646 False 497.000000 1014 86.535200 610 3123 5 chr3A.!!$F1 2513
5 TraesCS3B01G120200 chr3D 57177638 57179529 1891 True 646.666667 1565 90.120333 596 3079 3 chr3D.!!$R2 2483
6 TraesCS3B01G120200 chr3D 57324770 57336857 12087 False 532.600000 1262 88.400700 93 3052 10 chr3D.!!$F2 2959
7 TraesCS3B01G120200 chr6B 700901207 700901755 548 False 946.000000 946 97.653000 2172 2725 1 chr6B.!!$F1 553
8 TraesCS3B01G120200 chr4A 31907898 31908450 552 True 754.000000 754 91.320000 2175 2726 1 chr4A.!!$R1 551
9 TraesCS3B01G120200 chr4A 646633334 646633887 553 False 734.000000 734 90.614000 2173 2725 1 chr4A.!!$F1 552
10 TraesCS3B01G120200 chr4A 713895342 713895883 541 False 704.000000 704 90.054000 2175 2724 1 chr4A.!!$F2 549
11 TraesCS3B01G120200 chr2A 6005255 6005803 548 False 684.000000 684 89.130000 2175 2725 1 chr2A.!!$F1 550
12 TraesCS3B01G120200 chr1B 597401364 597401901 537 False 627.000000 627 87.612000 2175 2729 1 chr1B.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 4010 0.250234 CTCCCGCTTCCATGTCTTCA 59.75 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 12170 0.890683 CCAACCTCAAATCTGGCACC 59.109 55.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.540265 AGCGCTGCTGATAATAGCTT 57.460 45.000 10.39 0.00 44.01 3.74
37 38 2.411904 AGCGCTGCTGATAATAGCTTC 58.588 47.619 10.39 0.00 44.01 3.86
38 39 1.462670 GCGCTGCTGATAATAGCTTCC 59.537 52.381 0.00 0.00 44.01 3.46
39 40 2.072298 CGCTGCTGATAATAGCTTCCC 58.928 52.381 0.00 0.00 44.01 3.97
40 41 2.289320 CGCTGCTGATAATAGCTTCCCT 60.289 50.000 0.00 0.00 44.01 4.20
41 42 3.749226 GCTGCTGATAATAGCTTCCCTT 58.251 45.455 0.00 0.00 44.01 3.95
43 44 5.308825 GCTGCTGATAATAGCTTCCCTTAA 58.691 41.667 0.00 0.00 44.01 1.85
44 45 5.180304 GCTGCTGATAATAGCTTCCCTTAAC 59.820 44.000 0.00 0.00 44.01 2.01
45 46 5.621193 TGCTGATAATAGCTTCCCTTAACC 58.379 41.667 0.00 0.00 44.01 2.85
46 47 5.131977 TGCTGATAATAGCTTCCCTTAACCA 59.868 40.000 0.00 0.00 44.01 3.67
47 48 6.062095 GCTGATAATAGCTTCCCTTAACCAA 58.938 40.000 0.00 0.00 40.52 3.67
48 49 6.017026 GCTGATAATAGCTTCCCTTAACCAAC 60.017 42.308 0.00 0.00 40.52 3.77
49 50 6.964464 TGATAATAGCTTCCCTTAACCAACA 58.036 36.000 0.00 0.00 0.00 3.33
50 51 7.054124 TGATAATAGCTTCCCTTAACCAACAG 58.946 38.462 0.00 0.00 0.00 3.16
61 62 3.041940 CCAACAGTGGGCGTCGTC 61.042 66.667 0.00 0.00 41.77 4.20
62 63 2.029073 CAACAGTGGGCGTCGTCT 59.971 61.111 0.00 0.00 0.00 4.18
63 64 2.022129 CAACAGTGGGCGTCGTCTC 61.022 63.158 0.00 0.00 0.00 3.36
64 65 3.222354 AACAGTGGGCGTCGTCTCC 62.222 63.158 0.00 0.00 0.00 3.71
65 66 4.778415 CAGTGGGCGTCGTCTCCG 62.778 72.222 0.00 0.00 0.00 4.63
67 68 4.773117 GTGGGCGTCGTCTCCGTC 62.773 72.222 0.00 0.00 35.01 4.79
72 73 4.495939 CGTCGTCTCCGTCCGTCG 62.496 72.222 0.00 0.00 39.52 5.12
73 74 4.808238 GTCGTCTCCGTCCGTCGC 62.808 72.222 0.00 0.00 38.35 5.19
94 95 3.283684 CTCTCGCGCTCGGAGGAT 61.284 66.667 5.56 0.00 36.13 3.24
96 97 1.507974 CTCTCGCGCTCGGAGGATTA 61.508 60.000 5.56 0.00 36.13 1.75
120 3119 2.766313 TCCAGTCAACGAATCTTGTGG 58.234 47.619 0.00 0.00 0.00 4.17
121 3120 1.197721 CCAGTCAACGAATCTTGTGGC 59.802 52.381 0.00 0.00 0.00 5.01
124 3123 1.606668 GTCAACGAATCTTGTGGCCAA 59.393 47.619 7.24 0.00 0.00 4.52
125 3124 1.606668 TCAACGAATCTTGTGGCCAAC 59.393 47.619 7.24 2.03 0.00 3.77
126 3125 1.336440 CAACGAATCTTGTGGCCAACA 59.664 47.619 7.24 5.29 36.85 3.33
127 3126 1.238439 ACGAATCTTGTGGCCAACAG 58.762 50.000 7.24 6.54 40.74 3.16
128 3127 0.523072 CGAATCTTGTGGCCAACAGG 59.477 55.000 7.24 9.12 40.74 4.00
139 3138 2.932663 CCAACAGGCAGTAGTGGTG 58.067 57.895 0.00 0.00 0.00 4.17
140 3139 0.396435 CCAACAGGCAGTAGTGGTGA 59.604 55.000 0.00 0.00 32.77 4.02
147 3146 0.596577 GCAGTAGTGGTGACTCGTGA 59.403 55.000 0.00 0.00 33.21 4.35
148 3147 1.202582 GCAGTAGTGGTGACTCGTGAT 59.797 52.381 0.00 0.00 33.21 3.06
152 3151 1.919240 AGTGGTGACTCGTGATGGTA 58.081 50.000 0.00 0.00 0.00 3.25
155 3154 1.404035 TGGTGACTCGTGATGGTATCG 59.596 52.381 0.00 0.00 0.00 2.92
164 3163 2.032030 CGTGATGGTATCGGATTTTGGC 60.032 50.000 0.00 0.00 0.00 4.52
174 3173 4.229304 TCGGATTTTGGCTCCAGAAATA 57.771 40.909 0.00 0.00 32.72 1.40
179 3178 6.051074 GGATTTTGGCTCCAGAAATATTTGG 58.949 40.000 5.17 2.42 35.74 3.28
189 3188 3.876914 CAGAAATATTTGGAGCGCCACTA 59.123 43.478 9.41 4.41 45.94 2.74
206 3205 8.349983 AGCGCCACTATTTTCGATTTATTTTAT 58.650 29.630 2.29 0.00 0.00 1.40
246 3246 6.096846 ACCTACTCAAAGTGCTGAAACATTTT 59.903 34.615 0.00 0.00 30.49 1.82
247 3247 6.980397 CCTACTCAAAGTGCTGAAACATTTTT 59.020 34.615 0.00 0.00 28.16 1.94
249 3249 5.063817 ACTCAAAGTGCTGAAACATTTTTGC 59.936 36.000 0.00 0.00 31.99 3.68
264 3264 6.924111 ACATTTTTGCCACCTACTGAAATAG 58.076 36.000 0.00 0.00 0.00 1.73
278 3278 4.217118 ACTGAAATAGCTGAAACTTGCCAG 59.783 41.667 0.00 0.00 0.00 4.85
279 3279 3.507233 TGAAATAGCTGAAACTTGCCAGG 59.493 43.478 0.00 0.00 0.00 4.45
285 3285 2.803133 GCTGAAACTTGCCAGGTTTTCC 60.803 50.000 6.38 0.00 37.07 3.13
304 3304 7.041721 GTTTTCCCTGAAATTTCACTGAAAGT 58.958 34.615 24.81 4.60 38.54 2.66
318 3318 2.997980 TGAAAGTCAGAACCAAGTGCA 58.002 42.857 0.00 0.00 0.00 4.57
319 3319 3.554934 TGAAAGTCAGAACCAAGTGCAT 58.445 40.909 0.00 0.00 0.00 3.96
321 3321 4.756642 TGAAAGTCAGAACCAAGTGCATAG 59.243 41.667 0.00 0.00 0.00 2.23
322 3322 4.623932 AAGTCAGAACCAAGTGCATAGA 57.376 40.909 0.00 0.00 0.00 1.98
323 3323 4.833478 AGTCAGAACCAAGTGCATAGAT 57.167 40.909 0.00 0.00 0.00 1.98
324 3324 5.939764 AGTCAGAACCAAGTGCATAGATA 57.060 39.130 0.00 0.00 0.00 1.98
325 3325 5.665459 AGTCAGAACCAAGTGCATAGATAC 58.335 41.667 0.00 0.00 0.00 2.24
328 3328 6.697892 GTCAGAACCAAGTGCATAGATACTAC 59.302 42.308 0.00 0.00 0.00 2.73
329 3329 6.607600 TCAGAACCAAGTGCATAGATACTACT 59.392 38.462 0.00 0.00 0.00 2.57
330 3330 6.920758 CAGAACCAAGTGCATAGATACTACTC 59.079 42.308 0.00 0.00 0.00 2.59
355 3372 4.602340 CACTACAGTGTACTCCCTTTGT 57.398 45.455 0.00 0.00 40.96 2.83
356 3373 4.957296 CACTACAGTGTACTCCCTTTGTT 58.043 43.478 0.00 0.00 40.96 2.83
357 3374 4.989168 CACTACAGTGTACTCCCTTTGTTC 59.011 45.833 0.00 0.00 40.96 3.18
358 3375 3.487120 ACAGTGTACTCCCTTTGTTCC 57.513 47.619 0.00 0.00 0.00 3.62
359 3376 3.046374 ACAGTGTACTCCCTTTGTTCCT 58.954 45.455 0.00 0.00 0.00 3.36
360 3377 4.228824 ACAGTGTACTCCCTTTGTTCCTA 58.771 43.478 0.00 0.00 0.00 2.94
361 3378 4.657039 ACAGTGTACTCCCTTTGTTCCTAA 59.343 41.667 0.00 0.00 0.00 2.69
362 3379 5.131475 ACAGTGTACTCCCTTTGTTCCTAAA 59.869 40.000 0.00 0.00 0.00 1.85
363 3380 6.183361 ACAGTGTACTCCCTTTGTTCCTAAAT 60.183 38.462 0.00 0.00 0.00 1.40
364 3381 6.149474 CAGTGTACTCCCTTTGTTCCTAAATG 59.851 42.308 0.00 0.00 0.00 2.32
365 3382 6.043938 AGTGTACTCCCTTTGTTCCTAAATGA 59.956 38.462 0.00 0.00 0.00 2.57
366 3383 6.371825 GTGTACTCCCTTTGTTCCTAAATGAG 59.628 42.308 0.00 0.00 0.00 2.90
367 3384 5.584551 ACTCCCTTTGTTCCTAAATGAGT 57.415 39.130 0.00 0.00 31.88 3.41
368 3385 5.561679 ACTCCCTTTGTTCCTAAATGAGTC 58.438 41.667 0.00 0.00 31.47 3.36
369 3386 5.310857 ACTCCCTTTGTTCCTAAATGAGTCT 59.689 40.000 0.00 0.00 31.47 3.24
370 3387 6.183361 ACTCCCTTTGTTCCTAAATGAGTCTT 60.183 38.462 0.00 0.00 31.47 3.01
371 3388 6.610830 TCCCTTTGTTCCTAAATGAGTCTTT 58.389 36.000 0.00 0.00 0.00 2.52
372 3389 7.066781 TCCCTTTGTTCCTAAATGAGTCTTTT 58.933 34.615 8.83 8.83 0.00 2.27
373 3390 7.563556 TCCCTTTGTTCCTAAATGAGTCTTTTT 59.436 33.333 9.08 3.62 0.00 1.94
374 3391 8.856103 CCCTTTGTTCCTAAATGAGTCTTTTTA 58.144 33.333 9.08 4.50 0.00 1.52
375 3392 9.899226 CCTTTGTTCCTAAATGAGTCTTTTTAG 57.101 33.333 9.08 12.24 35.92 1.85
378 3395 9.621629 TTGTTCCTAAATGAGTCTTTTTAGACA 57.378 29.630 19.41 15.44 41.02 3.41
379 3396 9.793259 TGTTCCTAAATGAGTCTTTTTAGACAT 57.207 29.630 19.41 0.00 41.02 3.06
388 3405 9.918630 ATGAGTCTTTTTAGACATTTCAAATGG 57.081 29.630 14.70 0.00 41.02 3.16
389 3406 9.130661 TGAGTCTTTTTAGACATTTCAAATGGA 57.869 29.630 14.70 0.00 41.02 3.41
390 3407 9.399403 GAGTCTTTTTAGACATTTCAAATGGAC 57.601 33.333 14.70 8.92 41.02 4.02
391 3408 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
396 3413 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
397 3414 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
398 3415 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
399 3416 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
400 3417 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
401 3418 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
402 3419 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
403 3420 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
404 3421 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
405 3422 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
406 3423 3.173668 TGGACTACAACATACGGATGC 57.826 47.619 7.78 0.00 36.43 3.91
407 3424 2.498078 TGGACTACAACATACGGATGCA 59.502 45.455 7.78 0.00 36.43 3.96
408 3425 3.133901 TGGACTACAACATACGGATGCAT 59.866 43.478 7.78 0.00 36.43 3.96
409 3426 4.342665 TGGACTACAACATACGGATGCATA 59.657 41.667 7.78 0.00 36.43 3.14
410 3427 5.011635 TGGACTACAACATACGGATGCATAT 59.988 40.000 7.78 0.00 36.43 1.78
411 3428 6.209788 TGGACTACAACATACGGATGCATATA 59.790 38.462 7.78 0.00 36.43 0.86
412 3429 6.752351 GGACTACAACATACGGATGCATATAG 59.248 42.308 7.78 7.33 36.43 1.31
413 3430 7.362660 GGACTACAACATACGGATGCATATAGA 60.363 40.741 7.78 0.00 36.43 1.98
414 3431 7.313646 ACTACAACATACGGATGCATATAGAC 58.686 38.462 7.78 0.00 36.43 2.59
415 3432 6.096673 ACAACATACGGATGCATATAGACA 57.903 37.500 7.78 0.00 36.43 3.41
416 3433 6.701340 ACAACATACGGATGCATATAGACAT 58.299 36.000 7.78 0.00 36.43 3.06
417 3434 7.836842 ACAACATACGGATGCATATAGACATA 58.163 34.615 7.78 0.00 36.43 2.29
418 3435 8.478066 ACAACATACGGATGCATATAGACATAT 58.522 33.333 7.78 0.00 36.43 1.78
419 3436 9.317936 CAACATACGGATGCATATAGACATATT 57.682 33.333 7.78 0.00 36.43 1.28
420 3437 9.890629 AACATACGGATGCATATAGACATATTT 57.109 29.630 7.78 0.00 36.43 1.40
421 3438 9.890629 ACATACGGATGCATATAGACATATTTT 57.109 29.630 7.78 0.00 36.43 1.82
425 3442 9.809096 ACGGATGCATATAGACATATTTTAGAG 57.191 33.333 0.00 0.00 0.00 2.43
426 3443 9.809096 CGGATGCATATAGACATATTTTAGAGT 57.191 33.333 0.00 0.00 0.00 3.24
450 3467 9.052759 AGTGTAAATTCACTCATTTTACTTCGT 57.947 29.630 0.00 0.00 44.07 3.85
457 3474 9.871238 ATTCACTCATTTTACTTCGTACATAGT 57.129 29.630 0.00 0.00 0.00 2.12
458 3475 8.906636 TCACTCATTTTACTTCGTACATAGTC 57.093 34.615 0.50 0.00 0.00 2.59
459 3476 8.517056 TCACTCATTTTACTTCGTACATAGTCA 58.483 33.333 0.50 0.00 0.00 3.41
460 3477 8.584600 CACTCATTTTACTTCGTACATAGTCAC 58.415 37.037 0.50 0.00 0.00 3.67
461 3478 8.521176 ACTCATTTTACTTCGTACATAGTCACT 58.479 33.333 0.50 0.00 0.00 3.41
462 3479 9.355215 CTCATTTTACTTCGTACATAGTCACTT 57.645 33.333 0.50 0.00 0.00 3.16
463 3480 9.135843 TCATTTTACTTCGTACATAGTCACTTG 57.864 33.333 0.50 0.00 0.00 3.16
464 3481 8.922676 CATTTTACTTCGTACATAGTCACTTGT 58.077 33.333 0.50 0.00 0.00 3.16
465 3482 8.876275 TTTTACTTCGTACATAGTCACTTGTT 57.124 30.769 0.50 0.00 0.00 2.83
466 3483 9.964303 TTTTACTTCGTACATAGTCACTTGTTA 57.036 29.630 0.50 0.00 0.00 2.41
467 3484 9.616634 TTTACTTCGTACATAGTCACTTGTTAG 57.383 33.333 0.50 0.00 0.00 2.34
468 3485 7.444629 ACTTCGTACATAGTCACTTGTTAGA 57.555 36.000 0.00 0.00 0.00 2.10
469 3486 7.879070 ACTTCGTACATAGTCACTTGTTAGAA 58.121 34.615 0.00 0.00 0.00 2.10
470 3487 8.521176 ACTTCGTACATAGTCACTTGTTAGAAT 58.479 33.333 0.00 0.00 0.00 2.40
471 3488 8.906636 TTCGTACATAGTCACTTGTTAGAATC 57.093 34.615 0.00 0.00 0.00 2.52
472 3489 8.277490 TCGTACATAGTCACTTGTTAGAATCT 57.723 34.615 0.00 0.00 0.00 2.40
473 3490 8.396390 TCGTACATAGTCACTTGTTAGAATCTC 58.604 37.037 0.00 0.00 0.00 2.75
474 3491 8.399425 CGTACATAGTCACTTGTTAGAATCTCT 58.601 37.037 0.00 0.00 0.00 3.10
477 3494 9.688091 ACATAGTCACTTGTTAGAATCTCTAGA 57.312 33.333 0.00 0.00 29.56 2.43
481 3498 9.303116 AGTCACTTGTTAGAATCTCTAGAAAGA 57.697 33.333 0.00 0.00 32.30 2.52
482 3499 9.349145 GTCACTTGTTAGAATCTCTAGAAAGAC 57.651 37.037 0.00 0.00 32.30 3.01
483 3500 9.303116 TCACTTGTTAGAATCTCTAGAAAGACT 57.697 33.333 0.00 0.00 32.30 3.24
484 3501 9.921637 CACTTGTTAGAATCTCTAGAAAGACTT 57.078 33.333 0.00 0.00 32.30 3.01
492 3509 9.582648 AGAATCTCTAGAAAGACTTATACTCCC 57.417 37.037 0.00 0.00 0.00 4.30
493 3510 9.582648 GAATCTCTAGAAAGACTTATACTCCCT 57.417 37.037 0.00 0.00 0.00 4.20
494 3511 9.582648 AATCTCTAGAAAGACTTATACTCCCTC 57.417 37.037 0.00 0.00 0.00 4.30
495 3512 7.519927 TCTCTAGAAAGACTTATACTCCCTCC 58.480 42.308 0.00 0.00 0.00 4.30
496 3513 6.297582 TCTAGAAAGACTTATACTCCCTCCG 58.702 44.000 0.00 0.00 0.00 4.63
497 3514 4.869451 AGAAAGACTTATACTCCCTCCGT 58.131 43.478 0.00 0.00 0.00 4.69
498 3515 5.270794 AGAAAGACTTATACTCCCTCCGTT 58.729 41.667 0.00 0.00 0.00 4.44
499 3516 5.720520 AGAAAGACTTATACTCCCTCCGTTT 59.279 40.000 0.00 0.00 0.00 3.60
500 3517 5.340439 AAGACTTATACTCCCTCCGTTTG 57.660 43.478 0.00 0.00 0.00 2.93
501 3518 3.705072 AGACTTATACTCCCTCCGTTTGG 59.295 47.826 0.00 0.00 0.00 3.28
502 3519 3.703052 GACTTATACTCCCTCCGTTTGGA 59.297 47.826 0.00 0.00 43.88 3.53
503 3520 4.098894 ACTTATACTCCCTCCGTTTGGAA 58.901 43.478 0.00 0.00 45.87 3.53
504 3521 4.533311 ACTTATACTCCCTCCGTTTGGAAA 59.467 41.667 0.00 0.00 45.87 3.13
505 3522 5.191124 ACTTATACTCCCTCCGTTTGGAAAT 59.809 40.000 0.00 0.00 45.87 2.17
506 3523 6.384886 ACTTATACTCCCTCCGTTTGGAAATA 59.615 38.462 0.00 0.00 45.87 1.40
507 3524 3.345508 ACTCCCTCCGTTTGGAAATAC 57.654 47.619 0.00 0.00 45.87 1.89
508 3525 2.910977 ACTCCCTCCGTTTGGAAATACT 59.089 45.455 0.00 0.00 45.87 2.12
509 3526 3.329814 ACTCCCTCCGTTTGGAAATACTT 59.670 43.478 0.00 0.00 45.87 2.24
510 3527 3.681593 TCCCTCCGTTTGGAAATACTTG 58.318 45.455 0.00 0.00 45.87 3.16
511 3528 3.073356 TCCCTCCGTTTGGAAATACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
512 3529 3.439129 CCCTCCGTTTGGAAATACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
513 3530 3.439129 CCTCCGTTTGGAAATACTTGTCC 59.561 47.826 0.00 0.00 45.87 4.02
514 3531 4.324267 CTCCGTTTGGAAATACTTGTCCT 58.676 43.478 0.00 0.00 45.87 3.85
515 3532 5.484715 CTCCGTTTGGAAATACTTGTCCTA 58.515 41.667 0.00 0.00 45.87 2.94
516 3533 5.484715 TCCGTTTGGAAATACTTGTCCTAG 58.515 41.667 0.00 0.00 42.85 3.02
517 3534 5.246656 TCCGTTTGGAAATACTTGTCCTAGA 59.753 40.000 0.00 0.00 42.85 2.43
518 3535 6.070424 TCCGTTTGGAAATACTTGTCCTAGAT 60.070 38.462 0.00 0.00 42.85 1.98
519 3536 7.124599 TCCGTTTGGAAATACTTGTCCTAGATA 59.875 37.037 0.00 0.00 42.85 1.98
520 3537 7.438459 CCGTTTGGAAATACTTGTCCTAGATAG 59.562 40.741 0.00 0.00 37.49 2.08
521 3538 8.195436 CGTTTGGAAATACTTGTCCTAGATAGA 58.805 37.037 0.00 0.00 34.77 1.98
525 3542 9.877222 TGGAAATACTTGTCCTAGATAGATACA 57.123 33.333 0.00 0.00 34.77 2.29
549 3566 8.739039 ACATTCATTTTATCCATTTCGAAGACA 58.261 29.630 0.00 0.00 34.32 3.41
550 3567 9.571810 CATTCATTTTATCCATTTCGAAGACAA 57.428 29.630 0.00 0.00 34.32 3.18
551 3568 9.793252 ATTCATTTTATCCATTTCGAAGACAAG 57.207 29.630 0.00 0.00 34.32 3.16
552 3569 8.335532 TCATTTTATCCATTTCGAAGACAAGT 57.664 30.769 0.00 0.00 34.32 3.16
553 3570 9.443323 TCATTTTATCCATTTCGAAGACAAGTA 57.557 29.630 0.00 0.00 34.32 2.24
558 3575 6.737254 TCCATTTCGAAGACAAGTATTTCC 57.263 37.500 0.00 0.00 34.32 3.13
559 3576 5.350365 TCCATTTCGAAGACAAGTATTTCCG 59.650 40.000 0.00 0.00 34.32 4.30
560 3577 5.447279 CCATTTCGAAGACAAGTATTTCCGG 60.447 44.000 0.00 0.00 34.32 5.14
561 3578 4.524316 TTCGAAGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 34.32 5.14
562 3579 3.841643 TCGAAGACAAGTATTTCCGGAC 58.158 45.455 1.83 0.00 0.00 4.79
563 3580 2.597305 CGAAGACAAGTATTTCCGGACG 59.403 50.000 1.83 0.00 0.00 4.79
564 3581 2.667473 AGACAAGTATTTCCGGACGG 57.333 50.000 1.83 3.96 0.00 4.79
565 3582 2.173519 AGACAAGTATTTCCGGACGGA 58.826 47.619 1.83 9.76 43.52 4.69
566 3583 2.165845 AGACAAGTATTTCCGGACGGAG 59.834 50.000 13.64 3.15 46.06 4.63
567 3584 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
568 3585 1.479323 CAAGTATTTCCGGACGGAGGA 59.521 52.381 13.64 7.39 46.06 3.71
569 3586 1.856629 AGTATTTCCGGACGGAGGAA 58.143 50.000 13.64 6.93 46.06 3.36
575 3592 3.918294 TTCCGGACGGAGGAAATATTT 57.082 42.857 13.64 0.00 46.06 1.40
576 3593 3.188159 TCCGGACGGAGGAAATATTTG 57.812 47.619 9.76 0.00 39.76 2.32
577 3594 2.767394 TCCGGACGGAGGAAATATTTGA 59.233 45.455 9.76 0.00 39.76 2.69
578 3595 3.198200 TCCGGACGGAGGAAATATTTGAA 59.802 43.478 9.76 0.00 39.76 2.69
579 3596 3.942748 CCGGACGGAGGAAATATTTGAAA 59.057 43.478 5.17 0.00 37.50 2.69
580 3597 4.396790 CCGGACGGAGGAAATATTTGAAAA 59.603 41.667 5.17 0.00 37.50 2.29
581 3598 5.329493 CGGACGGAGGAAATATTTGAAAAC 58.671 41.667 5.17 0.00 0.00 2.43
582 3599 5.329493 GGACGGAGGAAATATTTGAAAACG 58.671 41.667 5.17 6.41 0.00 3.60
583 3600 5.305139 ACGGAGGAAATATTTGAAAACGG 57.695 39.130 5.17 0.72 0.00 4.44
584 3601 5.005094 ACGGAGGAAATATTTGAAAACGGA 58.995 37.500 5.17 0.00 0.00 4.69
585 3602 5.123344 ACGGAGGAAATATTTGAAAACGGAG 59.877 40.000 5.17 0.00 0.00 4.63
586 3603 5.353123 CGGAGGAAATATTTGAAAACGGAGA 59.647 40.000 5.17 0.00 0.00 3.71
587 3604 6.456988 CGGAGGAAATATTTGAAAACGGAGAG 60.457 42.308 5.17 0.00 0.00 3.20
588 3605 6.598064 GGAGGAAATATTTGAAAACGGAGAGA 59.402 38.462 5.17 0.00 0.00 3.10
589 3606 7.201652 GGAGGAAATATTTGAAAACGGAGAGAG 60.202 40.741 5.17 0.00 0.00 3.20
590 3607 7.168905 AGGAAATATTTGAAAACGGAGAGAGT 58.831 34.615 5.17 0.00 0.00 3.24
591 3608 8.319146 AGGAAATATTTGAAAACGGAGAGAGTA 58.681 33.333 5.17 0.00 0.00 2.59
592 3609 8.943002 GGAAATATTTGAAAACGGAGAGAGTAA 58.057 33.333 5.17 0.00 0.00 2.24
595 3612 9.667107 AATATTTGAAAACGGAGAGAGTAATCA 57.333 29.630 0.00 0.00 0.00 2.57
596 3613 7.979444 ATTTGAAAACGGAGAGAGTAATCAA 57.021 32.000 0.00 0.00 0.00 2.57
597 3614 7.979444 TTTGAAAACGGAGAGAGTAATCAAT 57.021 32.000 0.00 0.00 31.26 2.57
598 3615 7.979444 TTGAAAACGGAGAGAGTAATCAATT 57.021 32.000 0.00 0.00 0.00 2.32
604 3621 9.543783 AAACGGAGAGAGTAATCAATTAATACC 57.456 33.333 0.00 0.00 0.00 2.73
608 3625 9.413048 GGAGAGAGTAATCAATTAATACCTTCG 57.587 37.037 0.00 0.00 0.00 3.79
642 3659 4.098807 TCATGGCATGATTCTTTCCACATG 59.901 41.667 25.63 0.00 41.72 3.21
643 3660 2.761767 TGGCATGATTCTTTCCACATGG 59.238 45.455 0.00 0.00 39.96 3.66
644 3661 2.101917 GGCATGATTCTTTCCACATGGG 59.898 50.000 0.00 0.00 39.96 4.00
683 3703 0.685097 ACACTCATACACGCCACCTT 59.315 50.000 0.00 0.00 0.00 3.50
812 3859 2.600731 CGGTCATCTCTCACAGACAAC 58.399 52.381 0.00 0.00 32.26 3.32
827 3874 0.745845 ACAACGCTCATCATCTGCCC 60.746 55.000 0.00 0.00 0.00 5.36
840 3898 3.339742 TCATCTGCCCCCTACCTATATCA 59.660 47.826 0.00 0.00 0.00 2.15
923 3989 2.697229 TCCTATCCACTCGACTCGTCTA 59.303 50.000 0.00 0.00 0.00 2.59
938 4004 1.802880 CGTCTAACTCCCGCTTCCATG 60.803 57.143 0.00 0.00 0.00 3.66
944 4010 0.250234 CTCCCGCTTCCATGTCTTCA 59.750 55.000 0.00 0.00 0.00 3.02
1040 4122 1.397390 CCATGCCAATCTCCCCAAGC 61.397 60.000 0.00 0.00 0.00 4.01
1062 4150 4.804108 CAGGGAATAAGCTCTACGATGAG 58.196 47.826 0.00 0.00 37.16 2.90
1078 4166 0.530744 TGAGTGTGATCCTACGGTGC 59.469 55.000 0.00 0.00 0.00 5.01
1327 4467 8.761689 ACAATATCTTAGCCATTTCACCATTTT 58.238 29.630 0.00 0.00 0.00 1.82
1332 4472 6.719370 TCTTAGCCATTTCACCATTTTAGTGT 59.281 34.615 0.00 0.00 36.58 3.55
1408 6079 5.003804 TGATCAGCTTTTCTGGTAGAAACC 58.996 41.667 3.65 0.00 43.25 3.27
2165 12184 7.338800 AGTATATTTTGGTGCCAGATTTGAG 57.661 36.000 0.00 0.00 0.00 3.02
2166 12185 3.967332 ATTTTGGTGCCAGATTTGAGG 57.033 42.857 0.00 0.00 0.00 3.86
2167 12186 2.380064 TTTGGTGCCAGATTTGAGGT 57.620 45.000 0.00 0.00 0.00 3.85
2168 12187 2.380064 TTGGTGCCAGATTTGAGGTT 57.620 45.000 0.00 0.00 0.00 3.50
2169 12188 1.619654 TGGTGCCAGATTTGAGGTTG 58.380 50.000 0.00 0.00 0.00 3.77
2170 12189 0.890683 GGTGCCAGATTTGAGGTTGG 59.109 55.000 0.00 0.00 0.00 3.77
2572 12592 8.237811 ACCTCTTTTGTGAATGACATTAGTTT 57.762 30.769 0.00 0.00 33.40 2.66
2981 13047 7.987750 AGATATGACTATGAGACACACGTAT 57.012 36.000 0.00 0.00 0.00 3.06
2984 13050 9.544314 GATATGACTATGAGACACACGTATAAC 57.456 37.037 0.00 0.00 0.00 1.89
2985 13051 6.997239 TGACTATGAGACACACGTATAACT 57.003 37.500 0.00 0.00 0.00 2.24
2987 13053 7.913423 TGACTATGAGACACACGTATAACTAC 58.087 38.462 0.00 0.00 0.00 2.73
2990 13056 8.954350 ACTATGAGACACACGTATAACTACTTT 58.046 33.333 0.00 0.00 0.00 2.66
2993 13059 9.947669 ATGAGACACACGTATAACTACTTTATC 57.052 33.333 0.00 0.00 32.31 1.75
3068 13137 2.167900 GGGTGTTACTAGCATCGGAGTT 59.832 50.000 0.00 0.00 0.00 3.01
3119 16895 8.981724 ACTTCTGAGTTTTCAAGGTTTTTAAC 57.018 30.769 0.00 0.00 29.87 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.411904 GAAGCTATTATCAGCAGCGCT 58.588 47.619 2.64 2.64 44.35 5.92
19 20 2.072298 GGGAAGCTATTATCAGCAGCG 58.928 52.381 0.00 0.00 44.35 5.18
20 21 3.415457 AGGGAAGCTATTATCAGCAGC 57.585 47.619 0.00 0.00 44.35 5.25
21 22 5.703130 GGTTAAGGGAAGCTATTATCAGCAG 59.297 44.000 0.00 0.00 44.35 4.24
22 23 5.131977 TGGTTAAGGGAAGCTATTATCAGCA 59.868 40.000 0.00 0.00 44.35 4.41
23 24 5.621193 TGGTTAAGGGAAGCTATTATCAGC 58.379 41.667 0.00 0.00 42.12 4.26
24 25 7.054124 TGTTGGTTAAGGGAAGCTATTATCAG 58.946 38.462 0.00 0.00 36.45 2.90
25 26 6.964464 TGTTGGTTAAGGGAAGCTATTATCA 58.036 36.000 0.00 0.00 36.45 2.15
26 27 7.012421 CACTGTTGGTTAAGGGAAGCTATTATC 59.988 40.741 0.00 0.00 36.45 1.75
27 28 6.828785 CACTGTTGGTTAAGGGAAGCTATTAT 59.171 38.462 0.00 0.00 36.45 1.28
28 29 6.177610 CACTGTTGGTTAAGGGAAGCTATTA 58.822 40.000 0.00 0.00 36.45 0.98
29 30 5.010282 CACTGTTGGTTAAGGGAAGCTATT 58.990 41.667 0.00 0.00 36.45 1.73
32 33 2.489073 CCACTGTTGGTTAAGGGAAGCT 60.489 50.000 0.00 0.00 38.23 3.74
33 34 1.886542 CCACTGTTGGTTAAGGGAAGC 59.113 52.381 0.00 0.00 38.23 3.86
34 35 2.514803 CCCACTGTTGGTTAAGGGAAG 58.485 52.381 0.00 0.00 42.10 3.46
35 36 1.479757 GCCCACTGTTGGTTAAGGGAA 60.480 52.381 0.00 0.00 42.10 3.97
36 37 0.111639 GCCCACTGTTGGTTAAGGGA 59.888 55.000 0.00 0.00 42.10 4.20
37 38 1.241315 CGCCCACTGTTGGTTAAGGG 61.241 60.000 0.00 0.00 42.10 3.95
38 39 0.536460 ACGCCCACTGTTGGTTAAGG 60.536 55.000 0.00 0.00 42.10 2.69
39 40 0.872388 GACGCCCACTGTTGGTTAAG 59.128 55.000 0.00 0.00 42.10 1.85
40 41 0.881159 CGACGCCCACTGTTGGTTAA 60.881 55.000 0.00 0.00 42.10 2.01
41 42 1.301087 CGACGCCCACTGTTGGTTA 60.301 57.895 0.00 0.00 42.10 2.85
43 44 3.802418 GACGACGCCCACTGTTGGT 62.802 63.158 0.00 0.00 42.10 3.67
44 45 3.041940 GACGACGCCCACTGTTGG 61.042 66.667 0.00 0.00 43.50 3.77
45 46 2.022129 GAGACGACGCCCACTGTTG 61.022 63.158 0.00 0.00 0.00 3.33
46 47 2.338984 GAGACGACGCCCACTGTT 59.661 61.111 0.00 0.00 0.00 3.16
47 48 3.681835 GGAGACGACGCCCACTGT 61.682 66.667 0.00 0.00 0.00 3.55
77 78 1.507974 TAATCCTCCGAGCGCGAGAG 61.508 60.000 12.10 15.51 40.82 3.20
78 79 0.889638 ATAATCCTCCGAGCGCGAGA 60.890 55.000 12.10 5.49 40.82 4.04
79 80 0.803117 TATAATCCTCCGAGCGCGAG 59.197 55.000 12.10 6.87 40.82 5.03
80 81 1.460504 ATATAATCCTCCGAGCGCGA 58.539 50.000 12.10 0.00 40.82 5.87
81 82 2.186076 GAATATAATCCTCCGAGCGCG 58.814 52.381 0.00 0.00 37.24 6.86
82 83 2.094182 TGGAATATAATCCTCCGAGCGC 60.094 50.000 8.32 0.00 40.35 5.92
83 84 3.193691 ACTGGAATATAATCCTCCGAGCG 59.806 47.826 8.32 0.00 40.35 5.03
84 85 4.220821 TGACTGGAATATAATCCTCCGAGC 59.779 45.833 8.32 0.00 40.35 5.03
85 86 5.984695 TGACTGGAATATAATCCTCCGAG 57.015 43.478 8.32 0.04 40.35 4.63
86 87 5.278808 CGTTGACTGGAATATAATCCTCCGA 60.279 44.000 8.32 0.00 40.35 4.55
87 88 4.923871 CGTTGACTGGAATATAATCCTCCG 59.076 45.833 8.32 0.18 40.35 4.63
88 89 6.097915 TCGTTGACTGGAATATAATCCTCC 57.902 41.667 8.32 0.00 40.35 4.30
89 90 8.091449 AGATTCGTTGACTGGAATATAATCCTC 58.909 37.037 8.32 0.00 40.35 3.71
90 91 7.967908 AGATTCGTTGACTGGAATATAATCCT 58.032 34.615 8.32 0.00 40.35 3.24
91 92 8.499162 CAAGATTCGTTGACTGGAATATAATCC 58.501 37.037 0.00 0.00 40.10 3.01
92 93 9.046296 ACAAGATTCGTTGACTGGAATATAATC 57.954 33.333 0.00 0.00 33.25 1.75
93 94 8.830580 CACAAGATTCGTTGACTGGAATATAAT 58.169 33.333 0.00 0.00 33.25 1.28
94 95 7.279981 CCACAAGATTCGTTGACTGGAATATAA 59.720 37.037 0.00 0.00 33.25 0.98
96 97 5.586243 CCACAAGATTCGTTGACTGGAATAT 59.414 40.000 0.00 0.00 33.25 1.28
121 3120 0.396435 TCACCACTACTGCCTGTTGG 59.604 55.000 0.00 0.00 33.79 3.77
124 3123 0.969894 GAGTCACCACTACTGCCTGT 59.030 55.000 0.00 0.00 30.63 4.00
125 3124 0.109086 CGAGTCACCACTACTGCCTG 60.109 60.000 0.00 0.00 30.63 4.85
126 3125 0.539901 ACGAGTCACCACTACTGCCT 60.540 55.000 0.00 0.00 30.63 4.75
127 3126 0.388649 CACGAGTCACCACTACTGCC 60.389 60.000 0.00 0.00 30.63 4.85
128 3127 0.596577 TCACGAGTCACCACTACTGC 59.403 55.000 0.00 0.00 30.63 4.40
129 3128 2.416027 CCATCACGAGTCACCACTACTG 60.416 54.545 0.00 0.00 30.63 2.74
130 3129 1.819288 CCATCACGAGTCACCACTACT 59.181 52.381 0.00 0.00 30.63 2.57
131 3130 1.544691 ACCATCACGAGTCACCACTAC 59.455 52.381 0.00 0.00 30.63 2.73
132 3131 1.919240 ACCATCACGAGTCACCACTA 58.081 50.000 0.00 0.00 30.63 2.74
139 3138 3.644884 AATCCGATACCATCACGAGTC 57.355 47.619 0.00 0.00 0.00 3.36
140 3139 4.119862 CAAAATCCGATACCATCACGAGT 58.880 43.478 0.00 0.00 0.00 4.18
147 3146 2.174639 TGGAGCCAAAATCCGATACCAT 59.825 45.455 0.00 0.00 39.91 3.55
148 3147 1.562008 TGGAGCCAAAATCCGATACCA 59.438 47.619 0.00 0.00 39.91 3.25
152 3151 2.806945 TTCTGGAGCCAAAATCCGAT 57.193 45.000 0.00 0.00 39.91 4.18
155 3154 6.051074 CCAAATATTTCTGGAGCCAAAATCC 58.949 40.000 0.00 0.00 34.35 3.01
174 3173 2.097466 CGAAAATAGTGGCGCTCCAAAT 59.903 45.455 7.64 0.00 45.53 2.32
179 3178 3.675467 AAATCGAAAATAGTGGCGCTC 57.325 42.857 7.64 0.45 0.00 5.03
213 3212 5.812642 CAGCACTTTGAGTAGGTACCATAAG 59.187 44.000 15.94 9.82 0.00 1.73
214 3213 5.482526 TCAGCACTTTGAGTAGGTACCATAA 59.517 40.000 15.94 0.00 0.00 1.90
225 3225 5.063817 GCAAAAATGTTTCAGCACTTTGAGT 59.936 36.000 0.00 0.00 31.48 3.41
228 3228 4.094590 TGGCAAAAATGTTTCAGCACTTTG 59.905 37.500 0.00 0.00 32.29 2.77
246 3246 3.263170 TCAGCTATTTCAGTAGGTGGCAA 59.737 43.478 11.72 0.00 45.56 4.52
247 3247 2.837591 TCAGCTATTTCAGTAGGTGGCA 59.162 45.455 11.72 0.00 45.56 4.92
249 3249 5.491982 AGTTTCAGCTATTTCAGTAGGTGG 58.508 41.667 11.72 0.00 45.56 4.61
264 3264 2.473816 GAAAACCTGGCAAGTTTCAGC 58.526 47.619 14.17 4.49 36.44 4.26
278 3278 5.529581 TCAGTGAAATTTCAGGGAAAACC 57.470 39.130 21.05 7.05 37.98 3.27
279 3279 7.041721 ACTTTCAGTGAAATTTCAGGGAAAAC 58.958 34.615 28.84 16.39 38.66 2.43
285 3285 6.624352 TCTGACTTTCAGTGAAATTTCAGG 57.376 37.500 32.44 22.98 44.58 3.86
297 3297 2.945008 TGCACTTGGTTCTGACTTTCAG 59.055 45.455 0.00 0.00 45.59 3.02
304 3304 5.939764 AGTATCTATGCACTTGGTTCTGA 57.060 39.130 0.00 0.00 0.00 3.27
313 3313 6.843752 AGTGTAGGAGTAGTATCTATGCACT 58.156 40.000 0.00 0.00 31.94 4.40
314 3314 7.660617 TGTAGTGTAGGAGTAGTATCTATGCAC 59.339 40.741 0.00 0.00 0.00 4.57
315 3315 7.742767 TGTAGTGTAGGAGTAGTATCTATGCA 58.257 38.462 0.00 0.00 0.00 3.96
316 3316 7.879160 ACTGTAGTGTAGGAGTAGTATCTATGC 59.121 40.741 0.00 0.00 0.00 3.14
317 3317 9.210329 CACTGTAGTGTAGGAGTAGTATCTATG 57.790 40.741 3.88 0.00 40.96 2.23
346 3363 5.810095 AGACTCATTTAGGAACAAAGGGAG 58.190 41.667 0.00 0.00 32.87 4.30
349 3366 9.899226 CTAAAAAGACTCATTTAGGAACAAAGG 57.101 33.333 10.68 0.00 36.12 3.11
352 3369 9.621629 TGTCTAAAAAGACTCATTTAGGAACAA 57.378 29.630 15.43 0.87 38.85 2.83
353 3370 9.793259 ATGTCTAAAAAGACTCATTTAGGAACA 57.207 29.630 15.43 13.91 38.85 3.18
362 3379 9.918630 CCATTTGAAATGTCTAAAAAGACTCAT 57.081 29.630 15.93 0.00 39.41 2.90
363 3380 9.130661 TCCATTTGAAATGTCTAAAAAGACTCA 57.869 29.630 15.93 0.55 39.41 3.41
364 3381 9.399403 GTCCATTTGAAATGTCTAAAAAGACTC 57.601 33.333 15.93 0.00 39.41 3.36
365 3382 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
370 3387 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
371 3388 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
372 3389 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
373 3390 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
374 3391 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
375 3392 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
376 3393 7.361713 CCGTATGTTGTAGTCCATTTGAAATGT 60.362 37.037 15.93 1.43 0.00 2.71
377 3394 6.966632 CCGTATGTTGTAGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
378 3395 6.882140 TCCGTATGTTGTAGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
379 3396 6.231951 TCCGTATGTTGTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
380 3397 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
381 3398 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
382 3399 5.504010 GCATCCGTATGTTGTAGTCCATTTG 60.504 44.000 0.00 0.00 35.38 2.32
383 3400 4.574828 GCATCCGTATGTTGTAGTCCATTT 59.425 41.667 0.00 0.00 35.38 2.32
384 3401 4.127171 GCATCCGTATGTTGTAGTCCATT 58.873 43.478 0.00 0.00 35.38 3.16
385 3402 3.133901 TGCATCCGTATGTTGTAGTCCAT 59.866 43.478 0.00 0.00 35.38 3.41
386 3403 2.498078 TGCATCCGTATGTTGTAGTCCA 59.502 45.455 0.00 0.00 35.38 4.02
387 3404 3.173668 TGCATCCGTATGTTGTAGTCC 57.826 47.619 0.00 0.00 35.38 3.85
388 3405 7.485277 GTCTATATGCATCCGTATGTTGTAGTC 59.515 40.741 0.19 0.00 35.38 2.59
389 3406 7.039993 TGTCTATATGCATCCGTATGTTGTAGT 60.040 37.037 0.19 0.00 35.38 2.73
390 3407 7.312899 TGTCTATATGCATCCGTATGTTGTAG 58.687 38.462 0.19 0.00 35.38 2.74
391 3408 7.222000 TGTCTATATGCATCCGTATGTTGTA 57.778 36.000 0.19 0.00 35.38 2.41
392 3409 6.096673 TGTCTATATGCATCCGTATGTTGT 57.903 37.500 0.19 0.00 35.38 3.32
393 3410 8.877808 ATATGTCTATATGCATCCGTATGTTG 57.122 34.615 0.19 0.00 35.38 3.33
394 3411 9.890629 AAATATGTCTATATGCATCCGTATGTT 57.109 29.630 0.19 0.00 35.38 2.71
395 3412 9.890629 AAAATATGTCTATATGCATCCGTATGT 57.109 29.630 0.19 0.00 35.38 2.29
399 3416 9.809096 CTCTAAAATATGTCTATATGCATCCGT 57.191 33.333 0.19 0.00 30.00 4.69
400 3417 9.809096 ACTCTAAAATATGTCTATATGCATCCG 57.191 33.333 0.19 0.00 30.00 4.18
443 3460 8.552083 TCTAACAAGTGACTATGTACGAAGTA 57.448 34.615 0.00 0.00 45.11 2.24
445 3462 8.912787 ATTCTAACAAGTGACTATGTACGAAG 57.087 34.615 0.00 0.00 0.00 3.79
446 3463 8.737175 AGATTCTAACAAGTGACTATGTACGAA 58.263 33.333 0.00 0.99 0.00 3.85
447 3464 8.277490 AGATTCTAACAAGTGACTATGTACGA 57.723 34.615 0.00 0.00 0.00 3.43
448 3465 8.399425 AGAGATTCTAACAAGTGACTATGTACG 58.601 37.037 0.00 0.00 0.00 3.67
451 3468 9.688091 TCTAGAGATTCTAACAAGTGACTATGT 57.312 33.333 0.00 0.00 0.00 2.29
455 3472 9.303116 TCTTTCTAGAGATTCTAACAAGTGACT 57.697 33.333 0.00 0.00 0.00 3.41
456 3473 9.349145 GTCTTTCTAGAGATTCTAACAAGTGAC 57.651 37.037 0.00 0.00 0.00 3.67
457 3474 9.303116 AGTCTTTCTAGAGATTCTAACAAGTGA 57.697 33.333 0.00 0.00 0.00 3.41
458 3475 9.921637 AAGTCTTTCTAGAGATTCTAACAAGTG 57.078 33.333 0.00 0.00 0.00 3.16
466 3483 9.582648 GGGAGTATAAGTCTTTCTAGAGATTCT 57.417 37.037 0.00 0.00 0.00 2.40
467 3484 9.582648 AGGGAGTATAAGTCTTTCTAGAGATTC 57.417 37.037 0.00 0.00 0.00 2.52
468 3485 9.582648 GAGGGAGTATAAGTCTTTCTAGAGATT 57.417 37.037 0.00 0.00 0.00 2.40
469 3486 8.168058 GGAGGGAGTATAAGTCTTTCTAGAGAT 58.832 40.741 0.00 0.00 0.00 2.75
470 3487 7.519927 GGAGGGAGTATAAGTCTTTCTAGAGA 58.480 42.308 0.00 0.00 0.00 3.10
471 3488 6.428771 CGGAGGGAGTATAAGTCTTTCTAGAG 59.571 46.154 0.00 0.00 0.00 2.43
472 3489 6.126536 ACGGAGGGAGTATAAGTCTTTCTAGA 60.127 42.308 0.00 0.00 0.00 2.43
473 3490 6.063404 ACGGAGGGAGTATAAGTCTTTCTAG 58.937 44.000 0.00 0.00 0.00 2.43
474 3491 6.011122 ACGGAGGGAGTATAAGTCTTTCTA 57.989 41.667 0.00 0.00 0.00 2.10
475 3492 4.869451 ACGGAGGGAGTATAAGTCTTTCT 58.131 43.478 0.00 0.00 0.00 2.52
476 3493 5.595257 AACGGAGGGAGTATAAGTCTTTC 57.405 43.478 0.00 0.00 0.00 2.62
477 3494 5.338137 CCAAACGGAGGGAGTATAAGTCTTT 60.338 44.000 0.00 0.00 0.00 2.52
478 3495 4.161754 CCAAACGGAGGGAGTATAAGTCTT 59.838 45.833 0.00 0.00 0.00 3.01
479 3496 3.705072 CCAAACGGAGGGAGTATAAGTCT 59.295 47.826 0.00 0.00 0.00 3.24
480 3497 3.703052 TCCAAACGGAGGGAGTATAAGTC 59.297 47.826 0.00 0.00 0.00 3.01
481 3498 3.716431 TCCAAACGGAGGGAGTATAAGT 58.284 45.455 0.00 0.00 0.00 2.24
482 3499 4.748277 TTCCAAACGGAGGGAGTATAAG 57.252 45.455 0.00 0.00 34.02 1.73
483 3500 5.703730 ATTTCCAAACGGAGGGAGTATAA 57.296 39.130 0.00 0.00 34.02 0.98
484 3501 5.901276 AGTATTTCCAAACGGAGGGAGTATA 59.099 40.000 0.00 0.00 34.02 1.47
485 3502 4.720273 AGTATTTCCAAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 34.02 2.12
486 3503 4.098894 AGTATTTCCAAACGGAGGGAGTA 58.901 43.478 0.00 0.00 34.02 2.59
487 3504 2.910977 AGTATTTCCAAACGGAGGGAGT 59.089 45.455 0.00 0.00 34.02 3.85
488 3505 3.629142 AGTATTTCCAAACGGAGGGAG 57.371 47.619 0.00 0.00 34.02 4.30
489 3506 3.073356 ACAAGTATTTCCAAACGGAGGGA 59.927 43.478 0.00 0.00 32.88 4.20
490 3507 3.418047 ACAAGTATTTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
491 3508 3.439129 GGACAAGTATTTCCAAACGGAGG 59.561 47.826 0.00 0.00 32.88 4.30
492 3509 4.324267 AGGACAAGTATTTCCAAACGGAG 58.676 43.478 0.00 0.00 33.92 4.63
493 3510 4.360951 AGGACAAGTATTTCCAAACGGA 57.639 40.909 0.00 0.00 33.92 4.69
494 3511 5.484715 TCTAGGACAAGTATTTCCAAACGG 58.515 41.667 0.00 0.00 33.92 4.44
495 3512 8.195436 TCTATCTAGGACAAGTATTTCCAAACG 58.805 37.037 0.00 0.00 33.92 3.60
499 3516 9.877222 TGTATCTATCTAGGACAAGTATTTCCA 57.123 33.333 0.00 0.00 33.92 3.53
523 3540 8.739039 TGTCTTCGAAATGGATAAAATGAATGT 58.261 29.630 0.00 0.00 0.00 2.71
524 3541 9.571810 TTGTCTTCGAAATGGATAAAATGAATG 57.428 29.630 0.00 0.00 0.00 2.67
525 3542 9.793252 CTTGTCTTCGAAATGGATAAAATGAAT 57.207 29.630 0.00 0.00 0.00 2.57
526 3543 8.792633 ACTTGTCTTCGAAATGGATAAAATGAA 58.207 29.630 0.00 0.00 0.00 2.57
527 3544 8.335532 ACTTGTCTTCGAAATGGATAAAATGA 57.664 30.769 0.00 0.00 0.00 2.57
532 3549 8.889717 GGAAATACTTGTCTTCGAAATGGATAA 58.110 33.333 0.00 0.00 0.00 1.75
533 3550 7.223971 CGGAAATACTTGTCTTCGAAATGGATA 59.776 37.037 0.00 0.00 0.00 2.59
534 3551 6.037172 CGGAAATACTTGTCTTCGAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
535 3552 5.350365 CGGAAATACTTGTCTTCGAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
536 3553 5.447279 CCGGAAATACTTGTCTTCGAAATGG 60.447 44.000 0.00 0.00 0.00 3.16
537 3554 5.350365 TCCGGAAATACTTGTCTTCGAAATG 59.650 40.000 0.00 0.00 0.00 2.32
538 3555 5.350640 GTCCGGAAATACTTGTCTTCGAAAT 59.649 40.000 5.23 0.00 0.00 2.17
539 3556 4.687483 GTCCGGAAATACTTGTCTTCGAAA 59.313 41.667 5.23 0.00 0.00 3.46
540 3557 4.240096 GTCCGGAAATACTTGTCTTCGAA 58.760 43.478 5.23 0.00 0.00 3.71
541 3558 3.671433 CGTCCGGAAATACTTGTCTTCGA 60.671 47.826 5.23 0.00 0.00 3.71
542 3559 2.597305 CGTCCGGAAATACTTGTCTTCG 59.403 50.000 5.23 0.00 0.00 3.79
543 3560 2.928116 CCGTCCGGAAATACTTGTCTTC 59.072 50.000 5.23 0.00 37.50 2.87
544 3561 2.564062 TCCGTCCGGAAATACTTGTCTT 59.436 45.455 5.23 0.00 42.05 3.01
545 3562 2.165845 CTCCGTCCGGAAATACTTGTCT 59.834 50.000 5.23 0.00 44.66 3.41
546 3563 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
547 3564 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
548 3565 1.479323 TCCTCCGTCCGGAAATACTTG 59.521 52.381 5.23 0.00 44.66 3.16
549 3566 1.856629 TCCTCCGTCCGGAAATACTT 58.143 50.000 5.23 0.00 44.66 2.24
550 3567 1.856629 TTCCTCCGTCCGGAAATACT 58.143 50.000 5.23 0.00 44.66 2.12
551 3568 2.678471 TTTCCTCCGTCCGGAAATAC 57.322 50.000 5.23 0.00 43.57 1.89
555 3572 3.198200 TCAAATATTTCCTCCGTCCGGAA 59.802 43.478 5.23 0.00 44.66 4.30
556 3573 2.767394 TCAAATATTTCCTCCGTCCGGA 59.233 45.455 0.00 0.00 42.90 5.14
557 3574 3.188159 TCAAATATTTCCTCCGTCCGG 57.812 47.619 0.00 0.00 0.00 5.14
558 3575 5.329493 GTTTTCAAATATTTCCTCCGTCCG 58.671 41.667 0.00 0.00 0.00 4.79
559 3576 5.329493 CGTTTTCAAATATTTCCTCCGTCC 58.671 41.667 0.00 0.00 0.00 4.79
560 3577 5.122711 TCCGTTTTCAAATATTTCCTCCGTC 59.877 40.000 0.00 0.00 0.00 4.79
561 3578 5.005094 TCCGTTTTCAAATATTTCCTCCGT 58.995 37.500 0.00 0.00 0.00 4.69
562 3579 5.353123 TCTCCGTTTTCAAATATTTCCTCCG 59.647 40.000 0.00 0.00 0.00 4.63
563 3580 6.598064 TCTCTCCGTTTTCAAATATTTCCTCC 59.402 38.462 0.00 0.00 0.00 4.30
564 3581 7.334671 ACTCTCTCCGTTTTCAAATATTTCCTC 59.665 37.037 0.00 0.00 0.00 3.71
565 3582 7.168905 ACTCTCTCCGTTTTCAAATATTTCCT 58.831 34.615 0.00 0.00 0.00 3.36
566 3583 7.379098 ACTCTCTCCGTTTTCAAATATTTCC 57.621 36.000 0.00 0.00 0.00 3.13
569 3586 9.667107 TGATTACTCTCTCCGTTTTCAAATATT 57.333 29.630 0.00 0.00 0.00 1.28
570 3587 9.667107 TTGATTACTCTCTCCGTTTTCAAATAT 57.333 29.630 0.00 0.00 0.00 1.28
571 3588 9.667107 ATTGATTACTCTCTCCGTTTTCAAATA 57.333 29.630 0.00 0.00 0.00 1.40
572 3589 7.979444 TTGATTACTCTCTCCGTTTTCAAAT 57.021 32.000 0.00 0.00 0.00 2.32
573 3590 7.979444 ATTGATTACTCTCTCCGTTTTCAAA 57.021 32.000 0.00 0.00 0.00 2.69
574 3591 7.979444 AATTGATTACTCTCTCCGTTTTCAA 57.021 32.000 0.00 0.00 0.00 2.69
575 3592 9.667107 ATTAATTGATTACTCTCTCCGTTTTCA 57.333 29.630 0.00 0.00 0.00 2.69
578 3595 9.543783 GGTATTAATTGATTACTCTCTCCGTTT 57.456 33.333 0.00 0.00 0.00 3.60
579 3596 8.925338 AGGTATTAATTGATTACTCTCTCCGTT 58.075 33.333 0.00 0.00 0.00 4.44
580 3597 8.480133 AGGTATTAATTGATTACTCTCTCCGT 57.520 34.615 0.00 0.00 0.00 4.69
581 3598 9.413048 GAAGGTATTAATTGATTACTCTCTCCG 57.587 37.037 0.00 0.00 0.00 4.63
582 3599 9.413048 CGAAGGTATTAATTGATTACTCTCTCC 57.587 37.037 0.00 0.00 0.00 3.71
583 3600 9.968870 ACGAAGGTATTAATTGATTACTCTCTC 57.031 33.333 0.00 0.00 0.00 3.20
604 3621 4.196193 TGCCATGATAAACCCTTACGAAG 58.804 43.478 0.00 0.00 0.00 3.79
618 3635 8.143157 CCATGTGGAAAGAATCATGCCATGAT 62.143 42.308 14.41 14.41 44.33 2.45
619 3636 3.699413 TGTGGAAAGAATCATGCCATGA 58.301 40.909 10.29 10.29 44.55 3.07
642 3659 3.258372 TGCCATGAGTCGAATATACTCCC 59.742 47.826 0.00 0.00 42.24 4.30
643 3660 4.238514 GTGCCATGAGTCGAATATACTCC 58.761 47.826 0.00 0.00 42.24 3.85
644 3661 4.681942 GTGTGCCATGAGTCGAATATACTC 59.318 45.833 0.00 0.00 43.04 2.59
652 3672 0.897621 ATGAGTGTGCCATGAGTCGA 59.102 50.000 0.00 0.00 0.00 4.20
683 3703 2.396608 CATGGATTTGGCCAATGGGTA 58.603 47.619 21.26 3.66 42.16 3.69
812 3859 1.475169 TAGGGGGCAGATGATGAGCG 61.475 60.000 0.00 0.00 0.00 5.03
923 3989 0.693049 AAGACATGGAAGCGGGAGTT 59.307 50.000 0.00 0.00 0.00 3.01
938 4004 2.037772 TGAAGCAGAAGGAGGTGAAGAC 59.962 50.000 0.00 0.00 0.00 3.01
944 4010 1.280421 GGTGATGAAGCAGAAGGAGGT 59.720 52.381 0.00 0.00 0.00 3.85
1040 4122 4.279671 ACTCATCGTAGAGCTTATTCCCTG 59.720 45.833 6.76 0.00 43.63 4.45
1048 4130 3.067461 GGATCACACTCATCGTAGAGCTT 59.933 47.826 6.76 0.00 43.63 3.74
1327 4467 2.105649 TGGTTGATGCCTCACAACACTA 59.894 45.455 0.00 0.00 45.27 2.74
1332 4472 2.382882 TGTTTGGTTGATGCCTCACAA 58.617 42.857 0.00 0.00 0.00 3.33
1408 6079 7.432350 AGAGAGACTTCTTAATGCAAAGTTG 57.568 36.000 2.42 0.00 33.54 3.16
2151 12170 0.890683 CCAACCTCAAATCTGGCACC 59.109 55.000 0.00 0.00 0.00 5.01
2166 12185 1.765904 ACCCAAAACCATGGTTCCAAC 59.234 47.619 29.91 0.00 38.91 3.77
2167 12186 2.182516 ACCCAAAACCATGGTTCCAA 57.817 45.000 29.91 0.00 38.91 3.53
2168 12187 2.599677 GTACCCAAAACCATGGTTCCA 58.400 47.619 29.91 9.26 38.91 3.53
2169 12188 1.897133 GGTACCCAAAACCATGGTTCC 59.103 52.381 29.91 20.15 38.91 3.62
2170 12189 1.542472 CGGTACCCAAAACCATGGTTC 59.458 52.381 29.91 15.28 38.91 3.62
2394 12413 1.551452 CAGAAGGAGGACTCGAACCT 58.449 55.000 10.09 10.09 40.80 3.50
2835 12885 7.881751 CCATCTAGGATTTCTGCAATCTGAATA 59.118 37.037 0.32 0.00 41.22 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.