Multiple sequence alignment - TraesCS3B01G119900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G119900 chr3B 100.000 3086 0 0 1 3086 89679474 89682559 0.000000e+00 5699.0
1 TraesCS3B01G119900 chr3B 93.227 753 45 2 3 750 697111232 697111983 0.000000e+00 1103.0
2 TraesCS3B01G119900 chr3D 90.893 1120 59 15 975 2070 56844532 56843432 0.000000e+00 1463.0
3 TraesCS3B01G119900 chr3D 89.359 827 59 13 2260 3078 56842073 56841268 0.000000e+00 1013.0
4 TraesCS3B01G119900 chr3D 87.562 201 21 4 750 947 435313500 435313301 2.390000e-56 230.0
5 TraesCS3B01G119900 chr4B 94.828 754 33 2 1 748 543326772 543327525 0.000000e+00 1171.0
6 TraesCS3B01G119900 chr4B 93.923 757 40 2 1 752 584937626 584938381 0.000000e+00 1138.0
7 TraesCS3B01G119900 chr7B 93.923 757 39 3 1 750 48057012 48056256 0.000000e+00 1136.0
8 TraesCS3B01G119900 chr7B 93.510 755 40 4 4 750 676762769 676762016 0.000000e+00 1114.0
9 TraesCS3B01G119900 chr7B 93.035 761 48 1 3 758 646155653 646154893 0.000000e+00 1107.0
10 TraesCS3B01G119900 chr7B 93.122 756 46 2 1 750 619579552 619580307 0.000000e+00 1103.0
11 TraesCS3B01G119900 chr7B 86.275 204 26 2 750 952 27098341 27098139 1.440000e-53 220.0
12 TraesCS3B01G119900 chr7B 86.275 204 26 2 750 952 27131605 27131403 1.440000e-53 220.0
13 TraesCS3B01G119900 chr6B 93.519 756 43 2 1 750 516006175 516006930 0.000000e+00 1120.0
14 TraesCS3B01G119900 chr1B 93.386 756 44 2 1 751 453540491 453539737 0.000000e+00 1114.0
15 TraesCS3B01G119900 chr4A 84.518 788 98 18 1 771 488810553 488809773 0.000000e+00 758.0
16 TraesCS3B01G119900 chr4A 80.656 610 89 24 1 593 233655841 233655244 2.180000e-121 446.0
17 TraesCS3B01G119900 chr2A 80.798 802 108 27 1 783 635371861 635371087 1.230000e-163 586.0
18 TraesCS3B01G119900 chr5A 85.213 541 72 7 1 537 41108822 41108286 1.620000e-152 549.0
19 TraesCS3B01G119900 chr2D 88.293 205 20 4 750 951 425538978 425539181 3.070000e-60 243.0
20 TraesCS3B01G119900 chr2D 87.685 203 21 4 751 951 344994501 344994301 1.850000e-57 233.0
21 TraesCS3B01G119900 chr5D 88.832 197 21 1 751 947 494755789 494755984 1.110000e-59 241.0
22 TraesCS3B01G119900 chr4D 87.879 198 22 2 751 947 468858553 468858749 6.660000e-57 231.0
23 TraesCS3B01G119900 chr1D 87.317 205 23 3 750 952 283079939 283080142 6.660000e-57 231.0
24 TraesCS3B01G119900 chr6D 86.473 207 27 1 751 956 82575341 82575135 3.100000e-55 226.0
25 TraesCS3B01G119900 chr6A 84.884 86 7 6 694 776 515360772 515360854 7.090000e-12 82.4
26 TraesCS3B01G119900 chr3A 75.556 180 32 9 602 773 17467126 17466951 9.170000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G119900 chr3B 89679474 89682559 3085 False 5699 5699 100.000 1 3086 1 chr3B.!!$F1 3085
1 TraesCS3B01G119900 chr3B 697111232 697111983 751 False 1103 1103 93.227 3 750 1 chr3B.!!$F2 747
2 TraesCS3B01G119900 chr3D 56841268 56844532 3264 True 1238 1463 90.126 975 3078 2 chr3D.!!$R2 2103
3 TraesCS3B01G119900 chr4B 543326772 543327525 753 False 1171 1171 94.828 1 748 1 chr4B.!!$F1 747
4 TraesCS3B01G119900 chr4B 584937626 584938381 755 False 1138 1138 93.923 1 752 1 chr4B.!!$F2 751
5 TraesCS3B01G119900 chr7B 48056256 48057012 756 True 1136 1136 93.923 1 750 1 chr7B.!!$R3 749
6 TraesCS3B01G119900 chr7B 676762016 676762769 753 True 1114 1114 93.510 4 750 1 chr7B.!!$R5 746
7 TraesCS3B01G119900 chr7B 646154893 646155653 760 True 1107 1107 93.035 3 758 1 chr7B.!!$R4 755
8 TraesCS3B01G119900 chr7B 619579552 619580307 755 False 1103 1103 93.122 1 750 1 chr7B.!!$F1 749
9 TraesCS3B01G119900 chr6B 516006175 516006930 755 False 1120 1120 93.519 1 750 1 chr6B.!!$F1 749
10 TraesCS3B01G119900 chr1B 453539737 453540491 754 True 1114 1114 93.386 1 751 1 chr1B.!!$R1 750
11 TraesCS3B01G119900 chr4A 488809773 488810553 780 True 758 758 84.518 1 771 1 chr4A.!!$R2 770
12 TraesCS3B01G119900 chr4A 233655244 233655841 597 True 446 446 80.656 1 593 1 chr4A.!!$R1 592
13 TraesCS3B01G119900 chr2A 635371087 635371861 774 True 586 586 80.798 1 783 1 chr2A.!!$R1 782
14 TraesCS3B01G119900 chr5A 41108286 41108822 536 True 549 549 85.213 1 537 1 chr5A.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 655 0.036388 GGTTGGCTTCATGGTCGAGA 60.036 55.0 0.0 0.0 0.00 4.04 F
778 815 0.306533 GCTCTTCGCACCAAAAACGA 59.693 50.0 0.0 0.0 38.92 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1786 0.032952 TAATAGCGCCATCGGTCACC 59.967 55.0 2.29 0.0 46.03 4.02 R
2094 2156 0.177604 TTGCTTGCCCACAAAACAGG 59.822 50.0 0.00 0.0 34.74 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
263 268 1.415659 AGGAATGGAGAGGCAAGATCG 59.584 52.381 0.00 0.00 0.00 3.69
330 335 2.826725 CCTTCTCGGAGGAAGTAACAGT 59.173 50.000 4.96 0.00 40.56 3.55
405 412 2.250646 GGTGCGAACCCTTTACACC 58.749 57.895 0.00 0.00 43.57 4.16
434 449 4.838986 GGGGAGTGGCTTATATAGAGTTCA 59.161 45.833 0.00 0.00 0.00 3.18
604 628 1.403647 CGTCGAGTGGTTGGCTTCATA 60.404 52.381 0.00 0.00 0.00 2.15
631 655 0.036388 GGTTGGCTTCATGGTCGAGA 60.036 55.000 0.00 0.00 0.00 4.04
686 710 4.580580 AGTTGATTGACAGGTGGTTTCTTC 59.419 41.667 0.00 0.00 0.00 2.87
689 713 5.935945 TGATTGACAGGTGGTTTCTTCTAA 58.064 37.500 0.00 0.00 0.00 2.10
707 738 6.610425 TCTTCTAAAGATTGGGTAGGGTAGTC 59.390 42.308 0.00 0.00 31.20 2.59
711 742 1.416772 GATTGGGTAGGGTAGTCTGGC 59.583 57.143 0.00 0.00 0.00 4.85
774 811 3.339731 CGGCTCTTCGCACCAAAA 58.660 55.556 0.00 0.00 41.67 2.44
775 812 1.652012 CGGCTCTTCGCACCAAAAA 59.348 52.632 0.00 0.00 41.67 1.94
776 813 0.660300 CGGCTCTTCGCACCAAAAAC 60.660 55.000 0.00 0.00 41.67 2.43
777 814 0.660300 GGCTCTTCGCACCAAAAACG 60.660 55.000 0.00 0.00 41.67 3.60
778 815 0.306533 GCTCTTCGCACCAAAAACGA 59.693 50.000 0.00 0.00 38.92 3.85
780 817 2.604614 GCTCTTCGCACCAAAAACGATT 60.605 45.455 0.00 0.00 38.92 3.34
781 818 3.226347 CTCTTCGCACCAAAAACGATTC 58.774 45.455 0.00 0.00 35.48 2.52
782 819 1.969256 CTTCGCACCAAAAACGATTCG 59.031 47.619 4.14 4.14 35.48 3.34
783 820 0.384974 TCGCACCAAAAACGATTCGC 60.385 50.000 5.86 0.00 0.00 4.70
784 821 1.334288 CGCACCAAAAACGATTCGCC 61.334 55.000 5.86 0.00 0.00 5.54
785 822 1.006825 GCACCAAAAACGATTCGCCC 61.007 55.000 5.86 0.00 0.00 6.13
786 823 0.727793 CACCAAAAACGATTCGCCCG 60.728 55.000 5.86 0.00 0.00 6.13
787 824 0.885596 ACCAAAAACGATTCGCCCGA 60.886 50.000 5.86 0.00 0.00 5.14
788 825 0.453782 CCAAAAACGATTCGCCCGAC 60.454 55.000 5.86 0.00 0.00 4.79
789 826 0.787908 CAAAAACGATTCGCCCGACG 60.788 55.000 5.86 0.00 45.62 5.12
790 827 2.503034 AAAAACGATTCGCCCGACGC 62.503 55.000 5.86 0.00 43.23 5.19
819 856 4.456806 CGGATTCGGATTGGGTCC 57.543 61.111 0.00 0.00 44.10 4.46
833 870 3.370231 GTCCGCCGGCACCAATTT 61.370 61.111 28.98 0.00 0.00 1.82
834 871 3.059386 TCCGCCGGCACCAATTTC 61.059 61.111 28.98 0.00 0.00 2.17
835 872 4.474846 CCGCCGGCACCAATTTCG 62.475 66.667 28.98 6.19 0.00 3.46
836 873 3.427425 CGCCGGCACCAATTTCGA 61.427 61.111 28.98 0.00 0.00 3.71
837 874 2.178273 GCCGGCACCAATTTCGAC 59.822 61.111 24.80 0.00 0.00 4.20
838 875 2.874751 CCGGCACCAATTTCGACC 59.125 61.111 0.00 0.00 0.00 4.79
839 876 2.696759 CCGGCACCAATTTCGACCC 61.697 63.158 0.00 0.00 0.00 4.46
840 877 2.874751 GGCACCAATTTCGACCCG 59.125 61.111 0.00 0.00 0.00 5.28
841 878 1.673009 GGCACCAATTTCGACCCGA 60.673 57.895 0.00 0.00 0.00 5.14
842 879 1.644786 GGCACCAATTTCGACCCGAG 61.645 60.000 0.00 0.00 37.14 4.63
843 880 1.794222 CACCAATTTCGACCCGAGC 59.206 57.895 0.00 0.00 37.14 5.03
844 881 1.376812 ACCAATTTCGACCCGAGCC 60.377 57.895 0.00 0.00 37.14 4.70
845 882 2.461110 CCAATTTCGACCCGAGCCG 61.461 63.158 0.00 0.00 37.14 5.52
847 884 4.832608 ATTTCGACCCGAGCCGGC 62.833 66.667 21.89 21.89 46.86 6.13
855 892 3.788766 CCGAGCCGGCGAAAACTG 61.789 66.667 23.20 6.69 41.17 3.16
856 893 2.736995 CGAGCCGGCGAAAACTGA 60.737 61.111 23.20 0.00 0.00 3.41
857 894 2.730672 CGAGCCGGCGAAAACTGAG 61.731 63.158 23.20 1.75 0.00 3.35
858 895 3.028366 GAGCCGGCGAAAACTGAGC 62.028 63.158 23.20 0.00 0.00 4.26
859 896 4.103103 GCCGGCGAAAACTGAGCC 62.103 66.667 12.58 0.00 46.88 4.70
862 899 4.081050 GGCGAAAACTGAGCCCTT 57.919 55.556 0.00 0.00 44.80 3.95
863 900 1.581447 GGCGAAAACTGAGCCCTTG 59.419 57.895 0.00 0.00 44.80 3.61
864 901 1.581447 GCGAAAACTGAGCCCTTGG 59.419 57.895 0.00 0.00 0.00 3.61
865 902 1.866853 GCGAAAACTGAGCCCTTGGG 61.867 60.000 0.32 0.32 0.00 4.12
876 913 2.267642 CCTTGGGGACGCGATTGA 59.732 61.111 15.93 0.00 33.58 2.57
877 914 1.815421 CCTTGGGGACGCGATTGAG 60.815 63.158 15.93 2.42 33.58 3.02
878 915 2.435938 TTGGGGACGCGATTGAGC 60.436 61.111 15.93 0.00 0.00 4.26
879 916 3.969250 TTGGGGACGCGATTGAGCC 62.969 63.158 15.93 3.64 0.00 4.70
881 918 4.508128 GGGACGCGATTGAGCCGA 62.508 66.667 15.93 0.00 0.00 5.54
882 919 2.279517 GGACGCGATTGAGCCGAT 60.280 61.111 15.93 0.00 0.00 4.18
883 920 1.883084 GGACGCGATTGAGCCGATT 60.883 57.895 15.93 0.00 0.00 3.34
884 921 1.429148 GGACGCGATTGAGCCGATTT 61.429 55.000 15.93 0.00 0.00 2.17
885 922 0.373716 GACGCGATTGAGCCGATTTT 59.626 50.000 15.93 0.00 0.00 1.82
886 923 0.802494 ACGCGATTGAGCCGATTTTT 59.198 45.000 15.93 0.00 0.00 1.94
902 939 1.893544 TTTTTAATGCCGGTGGTCGA 58.106 45.000 1.90 0.00 42.43 4.20
903 940 1.893544 TTTTAATGCCGGTGGTCGAA 58.106 45.000 1.90 0.00 42.43 3.71
904 941 1.893544 TTTAATGCCGGTGGTCGAAA 58.106 45.000 1.90 0.00 42.43 3.46
905 942 1.893544 TTAATGCCGGTGGTCGAAAA 58.106 45.000 1.90 0.00 42.43 2.29
906 943 1.893544 TAATGCCGGTGGTCGAAAAA 58.106 45.000 1.90 0.00 42.43 1.94
907 944 0.596082 AATGCCGGTGGTCGAAAAAG 59.404 50.000 1.90 0.00 42.43 2.27
908 945 0.536460 ATGCCGGTGGTCGAAAAAGT 60.536 50.000 1.90 0.00 42.43 2.66
909 946 1.281656 GCCGGTGGTCGAAAAAGTG 59.718 57.895 1.90 0.00 42.43 3.16
910 947 1.441732 GCCGGTGGTCGAAAAAGTGT 61.442 55.000 1.90 0.00 42.43 3.55
911 948 0.584876 CCGGTGGTCGAAAAAGTGTC 59.415 55.000 0.00 0.00 42.43 3.67
912 949 1.578583 CGGTGGTCGAAAAAGTGTCT 58.421 50.000 0.00 0.00 42.43 3.41
913 950 1.260561 CGGTGGTCGAAAAAGTGTCTG 59.739 52.381 0.00 0.00 42.43 3.51
914 951 1.602377 GGTGGTCGAAAAAGTGTCTGG 59.398 52.381 0.00 0.00 0.00 3.86
915 952 1.602377 GTGGTCGAAAAAGTGTCTGGG 59.398 52.381 0.00 0.00 0.00 4.45
916 953 1.235724 GGTCGAAAAAGTGTCTGGGG 58.764 55.000 0.00 0.00 0.00 4.96
917 954 1.235724 GTCGAAAAAGTGTCTGGGGG 58.764 55.000 0.00 0.00 0.00 5.40
948 985 4.827087 CGCGGCTGGAGATGCTGT 62.827 66.667 0.00 0.00 38.90 4.40
949 986 2.437359 GCGGCTGGAGATGCTGTT 60.437 61.111 0.00 0.00 38.90 3.16
950 987 1.153369 GCGGCTGGAGATGCTGTTA 60.153 57.895 0.00 0.00 38.90 2.41
951 988 1.156645 GCGGCTGGAGATGCTGTTAG 61.157 60.000 0.00 0.00 38.90 2.34
952 989 0.461548 CGGCTGGAGATGCTGTTAGA 59.538 55.000 0.00 0.00 32.57 2.10
953 990 1.804372 CGGCTGGAGATGCTGTTAGAC 60.804 57.143 0.00 0.00 32.57 2.59
954 991 1.484240 GGCTGGAGATGCTGTTAGACT 59.516 52.381 0.00 0.00 0.00 3.24
955 992 2.695666 GGCTGGAGATGCTGTTAGACTA 59.304 50.000 0.00 0.00 0.00 2.59
956 993 3.243704 GGCTGGAGATGCTGTTAGACTAG 60.244 52.174 0.00 0.00 0.00 2.57
957 994 3.383185 GCTGGAGATGCTGTTAGACTAGT 59.617 47.826 0.00 0.00 0.00 2.57
958 995 4.736168 GCTGGAGATGCTGTTAGACTAGTG 60.736 50.000 0.00 0.00 0.00 2.74
959 996 4.600062 TGGAGATGCTGTTAGACTAGTGA 58.400 43.478 0.00 0.00 0.00 3.41
960 997 5.016831 TGGAGATGCTGTTAGACTAGTGAA 58.983 41.667 0.00 0.00 0.00 3.18
961 998 5.480422 TGGAGATGCTGTTAGACTAGTGAAA 59.520 40.000 0.00 0.00 0.00 2.69
962 999 6.155221 TGGAGATGCTGTTAGACTAGTGAAAT 59.845 38.462 0.00 0.00 0.00 2.17
963 1000 7.044798 GGAGATGCTGTTAGACTAGTGAAATT 58.955 38.462 0.00 0.00 0.00 1.82
964 1001 7.550906 GGAGATGCTGTTAGACTAGTGAAATTT 59.449 37.037 0.00 0.00 0.00 1.82
965 1002 8.261492 AGATGCTGTTAGACTAGTGAAATTTG 57.739 34.615 0.00 0.00 0.00 2.32
966 1003 8.097038 AGATGCTGTTAGACTAGTGAAATTTGA 58.903 33.333 0.00 0.00 0.00 2.69
967 1004 8.621532 ATGCTGTTAGACTAGTGAAATTTGAA 57.378 30.769 0.00 0.00 0.00 2.69
968 1005 8.087982 TGCTGTTAGACTAGTGAAATTTGAAG 57.912 34.615 0.00 0.00 0.00 3.02
969 1006 7.715249 TGCTGTTAGACTAGTGAAATTTGAAGT 59.285 33.333 0.00 0.00 0.00 3.01
970 1007 9.204570 GCTGTTAGACTAGTGAAATTTGAAGTA 57.795 33.333 0.00 0.00 0.00 2.24
1013 1051 2.565841 GCGCTCCAGATCTAACCAAAT 58.434 47.619 0.00 0.00 0.00 2.32
1020 1058 4.290985 TCCAGATCTAACCAAATCCAACCA 59.709 41.667 0.00 0.00 0.00 3.67
1021 1059 5.016173 CCAGATCTAACCAAATCCAACCAA 58.984 41.667 0.00 0.00 0.00 3.67
1022 1060 5.480073 CCAGATCTAACCAAATCCAACCAAA 59.520 40.000 0.00 0.00 0.00 3.28
1023 1061 6.155049 CCAGATCTAACCAAATCCAACCAAAT 59.845 38.462 0.00 0.00 0.00 2.32
1024 1062 7.260603 CAGATCTAACCAAATCCAACCAAATC 58.739 38.462 0.00 0.00 0.00 2.17
1026 1064 5.398236 TCTAACCAAATCCAACCAAATCCA 58.602 37.500 0.00 0.00 0.00 3.41
1027 1065 5.841237 TCTAACCAAATCCAACCAAATCCAA 59.159 36.000 0.00 0.00 0.00 3.53
1028 1066 4.350368 ACCAAATCCAACCAAATCCAAC 57.650 40.909 0.00 0.00 0.00 3.77
1029 1067 3.072330 ACCAAATCCAACCAAATCCAACC 59.928 43.478 0.00 0.00 0.00 3.77
1030 1068 3.324993 CAAATCCAACCAAATCCAACCG 58.675 45.455 0.00 0.00 0.00 4.44
1032 1070 1.182385 TCCAACCAAATCCAACCGGC 61.182 55.000 0.00 0.00 0.00 6.13
1034 1072 1.152440 AACCAAATCCAACCGGCCA 60.152 52.632 0.00 0.00 0.00 5.36
1035 1073 0.544120 AACCAAATCCAACCGGCCAT 60.544 50.000 0.00 0.00 0.00 4.40
1036 1074 0.970427 ACCAAATCCAACCGGCCATC 60.970 55.000 0.00 0.00 0.00 3.51
1038 1076 0.684153 CAAATCCAACCGGCCATCCT 60.684 55.000 0.00 0.00 0.00 3.24
1039 1077 0.395724 AAATCCAACCGGCCATCCTC 60.396 55.000 0.00 0.00 0.00 3.71
1040 1078 2.608970 AATCCAACCGGCCATCCTCG 62.609 60.000 0.00 0.00 0.00 4.63
1041 1079 3.781307 CCAACCGGCCATCCTCGA 61.781 66.667 0.00 0.00 0.00 4.04
1043 1081 3.000819 AACCGGCCATCCTCGACA 61.001 61.111 0.00 0.00 0.00 4.35
1044 1082 3.019003 AACCGGCCATCCTCGACAG 62.019 63.158 0.00 0.00 0.00 3.51
1170 1229 0.613853 CGGTTCCTCTACCTCCCACA 60.614 60.000 0.00 0.00 35.97 4.17
1195 1254 0.670854 GAGGTGGCAGACGAGGAAAC 60.671 60.000 0.00 0.00 0.00 2.78
1211 1270 0.463116 AAACGGGGGAATCGGAATCG 60.463 55.000 0.00 0.00 37.82 3.34
1212 1271 2.030562 CGGGGGAATCGGAATCGG 59.969 66.667 0.00 0.00 36.95 4.18
1213 1272 2.504274 CGGGGGAATCGGAATCGGA 61.504 63.158 0.00 0.00 36.95 4.55
1214 1273 1.371558 GGGGGAATCGGAATCGGAG 59.628 63.158 0.00 0.00 36.95 4.63
1215 1274 1.371558 GGGGAATCGGAATCGGAGG 59.628 63.158 0.00 0.00 36.95 4.30
1216 1275 1.119574 GGGGAATCGGAATCGGAGGA 61.120 60.000 0.00 0.00 36.95 3.71
1217 1276 0.977395 GGGAATCGGAATCGGAGGAT 59.023 55.000 0.00 0.00 36.95 3.24
1218 1277 1.338200 GGGAATCGGAATCGGAGGATG 60.338 57.143 0.00 0.00 36.95 3.51
1219 1278 1.433534 GAATCGGAATCGGAGGATGC 58.566 55.000 0.00 0.00 36.95 3.91
1282 1344 1.453379 GGGAGTCGACGGAGGATGA 60.453 63.158 10.46 0.00 0.00 2.92
1283 1345 1.448922 GGGAGTCGACGGAGGATGAG 61.449 65.000 10.46 0.00 0.00 2.90
1285 1347 0.464013 GAGTCGACGGAGGATGAGGA 60.464 60.000 10.46 0.00 0.00 3.71
1298 1360 3.827898 GAGGACGAGTGGGAGGCG 61.828 72.222 0.00 0.00 0.00 5.52
1315 1377 3.859414 GGAGCCTGATCCGCAGCT 61.859 66.667 4.84 0.66 43.50 4.24
1342 1404 3.129988 GCCAAGAATCCACCTCAATCAAG 59.870 47.826 0.00 0.00 0.00 3.02
1417 1479 2.777832 AATGGCGAGAAGAAGAAGCT 57.222 45.000 0.00 0.00 0.00 3.74
1426 1488 4.032672 CGAGAAGAAGAAGCTGCAACATAG 59.967 45.833 1.02 0.00 0.00 2.23
1429 1491 2.002586 GAAGAAGCTGCAACATAGCGA 58.997 47.619 1.02 0.00 45.61 4.93
1447 1509 0.526211 GAATCGGCAGAACCCAAACC 59.474 55.000 0.00 0.00 33.26 3.27
1448 1510 1.241315 AATCGGCAGAACCCAAACCG 61.241 55.000 0.00 0.00 45.15 4.44
1450 1512 1.894756 CGGCAGAACCCAAACCGAA 60.895 57.895 0.00 0.00 46.71 4.30
1466 1528 0.795735 CGAAGAAAAGCAGGCGCATG 60.796 55.000 19.36 19.36 42.27 4.06
1604 1666 0.549950 AGGACAGCAGCTGCCATTAT 59.450 50.000 34.39 13.75 43.38 1.28
1613 1675 4.220382 AGCAGCTGCCATTATTTTGTTGTA 59.780 37.500 34.39 0.00 43.38 2.41
1646 1708 4.436998 ACCCTGCTGCGTCGCTAC 62.437 66.667 19.50 10.80 0.00 3.58
1652 1714 0.389817 TGCTGCGTCGCTACAAATCT 60.390 50.000 19.50 0.00 0.00 2.40
1661 1723 5.034797 CGTCGCTACAAATCTCACATCTTA 58.965 41.667 0.00 0.00 0.00 2.10
1665 1727 6.920210 TCGCTACAAATCTCACATCTTATCTG 59.080 38.462 0.00 0.00 0.00 2.90
1700 1762 1.446966 GCGCCTTGACAGTCTCTCC 60.447 63.158 0.00 0.00 0.00 3.71
1709 1771 2.750166 TGACAGTCTCTCCGAAGATGTC 59.250 50.000 1.31 0.00 36.02 3.06
1724 1786 0.617413 ATGTCTGGGGAGACTTGCAG 59.383 55.000 0.00 0.00 39.41 4.41
1737 1799 4.758251 TGCAGGTGACCGATGGCG 62.758 66.667 0.00 0.00 37.24 5.69
1760 1822 1.336131 TTAATGGCAGCAAACAGGCA 58.664 45.000 0.00 0.00 42.09 4.75
1765 1827 2.633509 GCAGCAAACAGGCAGAGGG 61.634 63.158 0.00 0.00 35.83 4.30
1814 1876 4.079850 AGCAGCGGCCAGACTCAG 62.080 66.667 4.82 0.00 42.56 3.35
1861 1923 0.740868 GTGTATCCTCTGCTTGCGCA 60.741 55.000 5.66 5.66 45.60 6.09
2044 2106 4.410448 GCAAAGATTAGTGAGAAGCTTGC 58.590 43.478 2.10 0.00 35.32 4.01
2064 2126 1.066143 CCCGTCTGCTCACATAGGTTT 60.066 52.381 0.00 0.00 0.00 3.27
2070 2132 3.582647 TCTGCTCACATAGGTTTCCAAGA 59.417 43.478 0.00 0.00 0.00 3.02
2071 2133 4.041567 TCTGCTCACATAGGTTTCCAAGAA 59.958 41.667 0.00 0.00 0.00 2.52
2072 2134 4.922206 TGCTCACATAGGTTTCCAAGAAT 58.078 39.130 0.00 0.00 0.00 2.40
2073 2135 4.701651 TGCTCACATAGGTTTCCAAGAATG 59.298 41.667 0.00 0.00 0.00 2.67
2074 2136 4.702131 GCTCACATAGGTTTCCAAGAATGT 59.298 41.667 0.00 0.00 0.00 2.71
2075 2137 5.880332 GCTCACATAGGTTTCCAAGAATGTA 59.120 40.000 0.00 0.00 0.00 2.29
2076 2138 6.183360 GCTCACATAGGTTTCCAAGAATGTAC 60.183 42.308 0.00 0.00 0.00 2.90
2077 2139 7.016153 TCACATAGGTTTCCAAGAATGTACT 57.984 36.000 0.00 0.00 0.00 2.73
2078 2140 7.103641 TCACATAGGTTTCCAAGAATGTACTC 58.896 38.462 0.00 0.00 0.00 2.59
2079 2141 6.316390 CACATAGGTTTCCAAGAATGTACTCC 59.684 42.308 0.00 0.00 0.00 3.85
2080 2142 4.993705 AGGTTTCCAAGAATGTACTCCA 57.006 40.909 0.00 0.00 0.00 3.86
2081 2143 5.319043 AGGTTTCCAAGAATGTACTCCAA 57.681 39.130 0.00 0.00 0.00 3.53
2082 2144 5.701224 AGGTTTCCAAGAATGTACTCCAAA 58.299 37.500 0.00 0.00 0.00 3.28
2083 2145 6.133356 AGGTTTCCAAGAATGTACTCCAAAA 58.867 36.000 0.00 0.00 0.00 2.44
2084 2146 6.609616 AGGTTTCCAAGAATGTACTCCAAAAA 59.390 34.615 0.00 0.00 0.00 1.94
2103 2165 3.953542 AAAGAGTCTCCCCTGTTTTGT 57.046 42.857 0.00 0.00 0.00 2.83
2104 2166 2.938956 AGAGTCTCCCCTGTTTTGTG 57.061 50.000 0.00 0.00 0.00 3.33
2105 2167 1.421646 AGAGTCTCCCCTGTTTTGTGG 59.578 52.381 0.00 0.00 0.00 4.17
2106 2168 0.478507 AGTCTCCCCTGTTTTGTGGG 59.521 55.000 0.00 0.00 42.98 4.61
2107 2169 1.152830 TCTCCCCTGTTTTGTGGGC 59.847 57.895 0.00 0.00 42.03 5.36
2108 2170 1.152567 CTCCCCTGTTTTGTGGGCA 60.153 57.895 0.00 0.00 42.03 5.36
2109 2171 0.758685 CTCCCCTGTTTTGTGGGCAA 60.759 55.000 0.00 0.00 42.03 4.52
2110 2172 0.758685 TCCCCTGTTTTGTGGGCAAG 60.759 55.000 0.00 0.00 42.03 4.01
2111 2173 1.069596 CCCTGTTTTGTGGGCAAGC 59.930 57.895 0.00 0.00 36.61 4.01
2112 2174 1.684386 CCCTGTTTTGTGGGCAAGCA 61.684 55.000 0.00 0.00 36.61 3.91
2113 2175 0.177604 CCTGTTTTGTGGGCAAGCAA 59.822 50.000 0.00 0.00 35.82 3.91
2114 2176 1.574134 CTGTTTTGTGGGCAAGCAAG 58.426 50.000 0.00 0.00 35.82 4.01
2115 2177 1.136695 CTGTTTTGTGGGCAAGCAAGA 59.863 47.619 0.00 0.00 35.82 3.02
2116 2178 1.134848 TGTTTTGTGGGCAAGCAAGAC 60.135 47.619 0.00 0.00 35.82 3.01
2117 2179 1.134848 GTTTTGTGGGCAAGCAAGACA 60.135 47.619 0.00 0.00 35.82 3.41
2118 2180 1.189752 TTTGTGGGCAAGCAAGACAA 58.810 45.000 0.00 0.00 35.82 3.18
2119 2181 0.746063 TTGTGGGCAAGCAAGACAAG 59.254 50.000 0.00 0.00 0.00 3.16
2120 2182 1.108727 TGTGGGCAAGCAAGACAAGG 61.109 55.000 0.00 0.00 0.00 3.61
2121 2183 1.531365 TGGGCAAGCAAGACAAGGG 60.531 57.895 0.00 0.00 0.00 3.95
2122 2184 1.531602 GGGCAAGCAAGACAAGGGT 60.532 57.895 0.00 0.00 0.00 4.34
2123 2185 0.251165 GGGCAAGCAAGACAAGGGTA 60.251 55.000 0.00 0.00 0.00 3.69
2124 2186 1.616994 GGGCAAGCAAGACAAGGGTAT 60.617 52.381 0.00 0.00 0.00 2.73
2125 2187 1.474077 GGCAAGCAAGACAAGGGTATG 59.526 52.381 0.00 0.00 0.00 2.39
2126 2188 2.436417 GCAAGCAAGACAAGGGTATGA 58.564 47.619 0.00 0.00 0.00 2.15
2127 2189 2.819608 GCAAGCAAGACAAGGGTATGAA 59.180 45.455 0.00 0.00 0.00 2.57
2128 2190 3.366374 GCAAGCAAGACAAGGGTATGAAC 60.366 47.826 0.00 0.00 0.00 3.18
2145 2295 9.256228 GGGTATGAACTATGAAGGTATGAGATA 57.744 37.037 0.00 0.00 0.00 1.98
2149 2299 9.664332 ATGAACTATGAAGGTATGAGATAATGC 57.336 33.333 0.00 0.00 0.00 3.56
2150 2300 8.097038 TGAACTATGAAGGTATGAGATAATGCC 58.903 37.037 0.00 0.00 32.82 4.40
2151 2301 7.559335 ACTATGAAGGTATGAGATAATGCCA 57.441 36.000 0.00 0.00 34.95 4.92
2152 2302 8.155620 ACTATGAAGGTATGAGATAATGCCAT 57.844 34.615 0.00 0.00 34.95 4.40
2153 2303 8.609483 ACTATGAAGGTATGAGATAATGCCATT 58.391 33.333 0.00 0.00 34.95 3.16
2195 2345 6.667007 ATTTTCCTTTTGAAGCACAGTTTG 57.333 33.333 0.00 0.00 33.63 2.93
2212 2362 4.860907 CAGTTTGCTTCATATTGGCTTCAC 59.139 41.667 0.00 0.00 0.00 3.18
2223 2373 1.110442 TGGCTTCACTTGGTTGTTGG 58.890 50.000 0.00 0.00 0.00 3.77
2229 2379 1.039856 CACTTGGTTGTTGGGGAAGG 58.960 55.000 0.00 0.00 0.00 3.46
2230 2380 0.105709 ACTTGGTTGTTGGGGAAGGG 60.106 55.000 0.00 0.00 0.00 3.95
2234 2384 1.338107 GGTTGTTGGGGAAGGGAAAG 58.662 55.000 0.00 0.00 0.00 2.62
2235 2385 1.338107 GTTGTTGGGGAAGGGAAAGG 58.662 55.000 0.00 0.00 0.00 3.11
2236 2386 0.938192 TTGTTGGGGAAGGGAAAGGT 59.062 50.000 0.00 0.00 0.00 3.50
2237 2387 0.187361 TGTTGGGGAAGGGAAAGGTG 59.813 55.000 0.00 0.00 0.00 4.00
2238 2388 1.155155 TTGGGGAAGGGAAAGGTGC 59.845 57.895 0.00 0.00 0.00 5.01
2239 2389 1.368268 TTGGGGAAGGGAAAGGTGCT 61.368 55.000 0.00 0.00 0.00 4.40
2240 2390 0.476808 TGGGGAAGGGAAAGGTGCTA 60.477 55.000 0.00 0.00 0.00 3.49
2241 2391 0.702316 GGGGAAGGGAAAGGTGCTAA 59.298 55.000 0.00 0.00 0.00 3.09
2242 2392 1.288037 GGGGAAGGGAAAGGTGCTAAT 59.712 52.381 0.00 0.00 0.00 1.73
2243 2393 2.379005 GGGAAGGGAAAGGTGCTAATG 58.621 52.381 0.00 0.00 0.00 1.90
2244 2394 2.025321 GGGAAGGGAAAGGTGCTAATGA 60.025 50.000 0.00 0.00 0.00 2.57
2246 2396 3.444034 GGAAGGGAAAGGTGCTAATGAAC 59.556 47.826 0.00 0.00 0.00 3.18
2248 2398 4.112634 AGGGAAAGGTGCTAATGAACAA 57.887 40.909 0.00 0.00 0.00 2.83
2249 2399 4.479158 AGGGAAAGGTGCTAATGAACAAA 58.521 39.130 0.00 0.00 0.00 2.83
2250 2400 4.898861 AGGGAAAGGTGCTAATGAACAAAA 59.101 37.500 0.00 0.00 0.00 2.44
2251 2401 5.011023 AGGGAAAGGTGCTAATGAACAAAAG 59.989 40.000 0.00 0.00 0.00 2.27
2254 2404 6.861572 GGAAAGGTGCTAATGAACAAAAGTAC 59.138 38.462 0.00 0.00 0.00 2.73
2255 2405 5.959618 AGGTGCTAATGAACAAAAGTACC 57.040 39.130 14.29 14.29 42.90 3.34
2256 2406 5.381757 AGGTGCTAATGAACAAAAGTACCA 58.618 37.500 19.91 0.00 44.40 3.25
2257 2407 6.010219 AGGTGCTAATGAACAAAAGTACCAT 58.990 36.000 19.91 9.40 44.40 3.55
2258 2408 6.493458 AGGTGCTAATGAACAAAAGTACCATT 59.507 34.615 19.91 0.00 44.40 3.16
2259 2409 7.015195 AGGTGCTAATGAACAAAAGTACCATTT 59.985 33.333 19.91 0.00 44.40 2.32
2260 2410 7.655732 GGTGCTAATGAACAAAAGTACCATTTT 59.344 33.333 15.98 0.00 42.35 1.82
2262 2412 7.870445 TGCTAATGAACAAAAGTACCATTTTCC 59.130 33.333 0.00 0.00 30.01 3.13
2263 2413 7.330946 GCTAATGAACAAAAGTACCATTTTCCC 59.669 37.037 0.00 0.00 30.01 3.97
2264 2414 6.739331 ATGAACAAAAGTACCATTTTCCCA 57.261 33.333 0.00 0.00 30.01 4.37
2265 2415 5.908341 TGAACAAAAGTACCATTTTCCCAC 58.092 37.500 0.00 0.00 30.01 4.61
2272 3521 8.417884 CAAAAGTACCATTTTCCCACTTTCTTA 58.582 33.333 0.00 0.00 38.21 2.10
2280 3529 7.610305 CCATTTTCCCACTTTCTTAGTAAGCTA 59.390 37.037 4.93 0.00 34.56 3.32
2299 3548 6.263516 AGCTAATTACTCTCAACACGTACA 57.736 37.500 0.00 0.00 0.00 2.90
2307 3556 5.357257 ACTCTCAACACGTACAAGATGTTT 58.643 37.500 0.00 0.00 34.36 2.83
2310 3559 7.493320 ACTCTCAACACGTACAAGATGTTTTAA 59.507 33.333 0.00 0.00 34.36 1.52
2361 3610 5.476752 GCATTAGCTGAAGTGAAGGTTAG 57.523 43.478 0.00 0.00 37.91 2.34
2363 3612 5.412904 GCATTAGCTGAAGTGAAGGTTAGTT 59.587 40.000 0.00 0.00 37.91 2.24
2364 3613 6.594159 GCATTAGCTGAAGTGAAGGTTAGTTA 59.406 38.462 0.00 0.00 37.91 2.24
2365 3614 7.201565 GCATTAGCTGAAGTGAAGGTTAGTTAG 60.202 40.741 0.00 0.00 37.91 2.34
2366 3615 7.534723 TTAGCTGAAGTGAAGGTTAGTTAGA 57.465 36.000 0.00 0.00 0.00 2.10
2367 3616 6.031751 AGCTGAAGTGAAGGTTAGTTAGAG 57.968 41.667 0.00 0.00 0.00 2.43
2368 3617 5.540719 AGCTGAAGTGAAGGTTAGTTAGAGT 59.459 40.000 0.00 0.00 0.00 3.24
2369 3618 5.865013 GCTGAAGTGAAGGTTAGTTAGAGTC 59.135 44.000 0.00 0.00 0.00 3.36
2371 3620 7.598759 TGAAGTGAAGGTTAGTTAGAGTCTT 57.401 36.000 0.00 0.00 0.00 3.01
2372 3621 7.434492 TGAAGTGAAGGTTAGTTAGAGTCTTG 58.566 38.462 0.00 0.00 0.00 3.02
2373 3622 7.287005 TGAAGTGAAGGTTAGTTAGAGTCTTGA 59.713 37.037 0.00 0.00 0.00 3.02
2374 3623 7.784470 AGTGAAGGTTAGTTAGAGTCTTGAT 57.216 36.000 0.00 0.00 0.00 2.57
2375 3624 8.196378 AGTGAAGGTTAGTTAGAGTCTTGATT 57.804 34.615 0.00 0.00 0.00 2.57
2376 3625 9.310449 AGTGAAGGTTAGTTAGAGTCTTGATTA 57.690 33.333 0.00 0.00 0.00 1.75
2383 3632 8.968969 GTTAGTTAGAGTCTTGATTAGAGGGAA 58.031 37.037 0.00 0.00 32.23 3.97
2390 3639 8.997734 AGAGTCTTGATTAGAGGGAAACATATT 58.002 33.333 0.00 0.00 32.23 1.28
2439 3688 4.822685 TGCTAACATGGCATGGAAAATT 57.177 36.364 29.49 17.09 34.56 1.82
2440 3689 4.505808 TGCTAACATGGCATGGAAAATTG 58.494 39.130 29.49 13.57 34.56 2.32
2441 3690 4.222366 TGCTAACATGGCATGGAAAATTGA 59.778 37.500 29.49 1.53 34.56 2.57
2442 3691 5.177326 GCTAACATGGCATGGAAAATTGAA 58.823 37.500 29.49 1.88 33.60 2.69
2443 3692 5.642919 GCTAACATGGCATGGAAAATTGAAA 59.357 36.000 29.49 1.22 33.60 2.69
2455 3704 9.740239 CATGGAAAATTGAAATGTATAGGACAG 57.260 33.333 0.00 0.00 42.79 3.51
2495 3744 7.720074 AGTCGTCTTCCTACATTATGTCATCTA 59.280 37.037 0.00 0.00 0.00 1.98
2528 3777 7.611770 TGAGTTGTAGCACACTAATATGAAGT 58.388 34.615 0.00 0.00 0.00 3.01
2562 3811 0.316204 AGGCATTGCAGCAAACTCAC 59.684 50.000 12.97 1.39 35.83 3.51
2611 3861 8.529424 TTTTTATTATCGGAGAGAGACCACTA 57.471 34.615 0.00 0.00 43.63 2.74
2613 3863 4.498894 TTATCGGAGAGAGACCACTACA 57.501 45.455 0.00 0.00 43.63 2.74
2617 3867 3.506455 TCGGAGAGAGACCACTACAAAAG 59.494 47.826 0.00 0.00 0.00 2.27
2620 3870 5.474825 GGAGAGAGACCACTACAAAAGAAG 58.525 45.833 0.00 0.00 0.00 2.85
2621 3871 5.011227 GGAGAGAGACCACTACAAAAGAAGT 59.989 44.000 0.00 0.00 0.00 3.01
2628 3878 8.026396 AGACCACTACAAAAGAAGTAAGGTAA 57.974 34.615 0.00 0.00 33.01 2.85
2667 3917 6.977502 CACAACCAAAACATCACAGTTTGATA 59.022 34.615 0.00 0.00 43.68 2.15
2677 3927 7.743104 ACATCACAGTTTGATAACGATTTCTC 58.257 34.615 0.00 0.00 43.68 2.87
2710 3960 6.208599 GTCCCTCTACCTTATGATCTCTCAAG 59.791 46.154 0.00 0.00 34.37 3.02
2779 4029 7.748677 TCTTTCCATCTATGCTTATTCATCCA 58.251 34.615 0.00 0.00 0.00 3.41
2805 4055 9.603921 ATCCATGTCAAATTAACAATCAAATCC 57.396 29.630 0.00 0.00 0.00 3.01
2863 4113 2.570302 GCCCAATAGTATATCACCCCGT 59.430 50.000 0.00 0.00 0.00 5.28
2872 4122 4.587684 AGTATATCACCCCGTTAGTTCTGG 59.412 45.833 0.00 0.00 0.00 3.86
2876 4126 2.438763 TCACCCCGTTAGTTCTGGAAAA 59.561 45.455 0.00 0.00 0.00 2.29
2877 4127 2.551032 CACCCCGTTAGTTCTGGAAAAC 59.449 50.000 0.00 0.00 0.00 2.43
2878 4128 2.156917 CCCCGTTAGTTCTGGAAAACC 58.843 52.381 0.00 0.00 0.00 3.27
2879 4129 2.224695 CCCCGTTAGTTCTGGAAAACCT 60.225 50.000 0.00 0.00 0.00 3.50
2882 4132 4.324267 CCGTTAGTTCTGGAAAACCTGAT 58.676 43.478 0.00 0.00 0.00 2.90
2885 4135 3.059352 AGTTCTGGAAAACCTGATCGG 57.941 47.619 0.00 0.00 39.35 4.18
2903 4153 4.411256 TCGGGATCATTACCACCTAAAC 57.589 45.455 0.00 0.00 0.00 2.01
2917 4167 5.778750 ACCACCTAAACTGTACACTGATACT 59.221 40.000 0.00 0.00 0.00 2.12
2936 4186 6.481976 TGATACTATTAAACAGTTGGCCATCG 59.518 38.462 6.09 5.16 0.00 3.84
2953 4203 4.561530 GCCATCGAAGACTATGCTGGATTA 60.562 45.833 0.18 0.00 42.51 1.75
2954 4204 4.926238 CCATCGAAGACTATGCTGGATTAC 59.074 45.833 0.00 0.00 42.51 1.89
2961 4211 7.041303 CGAAGACTATGCTGGATTACTACTGTA 60.041 40.741 0.00 0.00 0.00 2.74
3038 4288 4.881850 AGTCCTAATTGTATTGGAAAGCGG 59.118 41.667 0.00 0.00 0.00 5.52
3039 4289 4.638865 GTCCTAATTGTATTGGAAAGCGGT 59.361 41.667 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
263 268 6.072838 TGCGTATACAACTACTCCATAGCTAC 60.073 42.308 3.32 0.00 33.73 3.58
330 335 2.124403 GGGCTCCGAGACGTAGGA 60.124 66.667 0.00 6.70 34.93 2.94
405 412 0.760945 ATAAGCCACTCCCCTCCTCG 60.761 60.000 0.00 0.00 0.00 4.63
604 628 0.687354 ATGAAGCCAACCACTCGACT 59.313 50.000 0.00 0.00 0.00 4.18
666 690 4.437682 AGAAGAAACCACCTGTCAATCA 57.562 40.909 0.00 0.00 0.00 2.57
686 710 5.070580 CCAGACTACCCTACCCAATCTTTAG 59.929 48.000 0.00 0.00 0.00 1.85
689 713 3.385115 CCAGACTACCCTACCCAATCTT 58.615 50.000 0.00 0.00 0.00 2.40
802 839 4.456806 GGACCCAATCCGAATCCG 57.543 61.111 0.00 0.00 37.88 4.18
816 853 3.336715 GAAATTGGTGCCGGCGGAC 62.337 63.158 33.44 23.43 0.00 4.79
817 854 3.059386 GAAATTGGTGCCGGCGGA 61.059 61.111 33.44 12.50 0.00 5.54
818 855 4.474846 CGAAATTGGTGCCGGCGG 62.475 66.667 24.35 24.35 0.00 6.13
819 856 3.427425 TCGAAATTGGTGCCGGCG 61.427 61.111 23.90 0.00 0.00 6.46
820 857 2.178273 GTCGAAATTGGTGCCGGC 59.822 61.111 22.73 22.73 0.00 6.13
821 858 2.696759 GGGTCGAAATTGGTGCCGG 61.697 63.158 0.00 0.00 0.00 6.13
822 859 2.874751 GGGTCGAAATTGGTGCCG 59.125 61.111 0.00 0.00 0.00 5.69
823 860 1.644786 CTCGGGTCGAAATTGGTGCC 61.645 60.000 0.00 0.00 34.74 5.01
824 861 1.794222 CTCGGGTCGAAATTGGTGC 59.206 57.895 0.00 0.00 34.74 5.01
825 862 1.644786 GGCTCGGGTCGAAATTGGTG 61.645 60.000 0.00 0.00 34.74 4.17
826 863 1.376812 GGCTCGGGTCGAAATTGGT 60.377 57.895 0.00 0.00 34.74 3.67
827 864 2.461110 CGGCTCGGGTCGAAATTGG 61.461 63.158 1.08 0.00 44.06 3.16
828 865 2.461110 CCGGCTCGGGTCGAAATTG 61.461 63.158 12.88 0.00 44.06 2.32
829 866 2.125269 CCGGCTCGGGTCGAAATT 60.125 61.111 12.88 0.00 44.06 1.82
839 876 2.730672 CTCAGTTTTCGCCGGCTCG 61.731 63.158 26.68 10.37 0.00 5.03
840 877 3.028366 GCTCAGTTTTCGCCGGCTC 62.028 63.158 26.68 9.45 0.00 4.70
841 878 3.050275 GCTCAGTTTTCGCCGGCT 61.050 61.111 26.68 0.00 0.00 5.52
842 879 4.103103 GGCTCAGTTTTCGCCGGC 62.103 66.667 19.07 19.07 33.64 6.13
843 880 3.431725 GGGCTCAGTTTTCGCCGG 61.432 66.667 0.00 0.00 44.68 6.13
844 881 1.966451 AAGGGCTCAGTTTTCGCCG 60.966 57.895 0.00 0.00 44.68 6.46
845 882 1.581447 CAAGGGCTCAGTTTTCGCC 59.419 57.895 0.00 0.00 43.03 5.54
846 883 1.581447 CCAAGGGCTCAGTTTTCGC 59.419 57.895 0.00 0.00 0.00 4.70
847 884 1.244019 CCCCAAGGGCTCAGTTTTCG 61.244 60.000 0.00 0.00 35.35 3.46
848 885 0.112412 TCCCCAAGGGCTCAGTTTTC 59.888 55.000 0.00 0.00 43.94 2.29
849 886 0.178961 GTCCCCAAGGGCTCAGTTTT 60.179 55.000 0.00 0.00 43.94 2.43
850 887 1.460699 GTCCCCAAGGGCTCAGTTT 59.539 57.895 0.00 0.00 43.94 2.66
851 888 2.895424 CGTCCCCAAGGGCTCAGTT 61.895 63.158 0.00 0.00 43.94 3.16
852 889 3.322466 CGTCCCCAAGGGCTCAGT 61.322 66.667 0.00 0.00 43.94 3.41
853 890 4.785453 GCGTCCCCAAGGGCTCAG 62.785 72.222 0.00 0.00 43.94 3.35
857 894 4.796495 AATCGCGTCCCCAAGGGC 62.796 66.667 5.77 0.00 43.94 5.19
858 895 2.824041 CAATCGCGTCCCCAAGGG 60.824 66.667 5.77 0.00 46.11 3.95
859 896 1.815421 CTCAATCGCGTCCCCAAGG 60.815 63.158 5.77 0.00 0.00 3.61
860 897 2.464459 GCTCAATCGCGTCCCCAAG 61.464 63.158 5.77 0.00 0.00 3.61
861 898 2.435938 GCTCAATCGCGTCCCCAA 60.436 61.111 5.77 0.00 0.00 4.12
862 899 4.467084 GGCTCAATCGCGTCCCCA 62.467 66.667 5.77 0.00 0.00 4.96
864 901 3.792053 ATCGGCTCAATCGCGTCCC 62.792 63.158 5.77 0.00 0.00 4.46
865 902 1.429148 AAATCGGCTCAATCGCGTCC 61.429 55.000 5.77 0.00 0.00 4.79
866 903 0.373716 AAAATCGGCTCAATCGCGTC 59.626 50.000 5.77 0.00 0.00 5.19
867 904 0.802494 AAAAATCGGCTCAATCGCGT 59.198 45.000 5.77 0.00 0.00 6.01
868 905 3.604130 AAAAATCGGCTCAATCGCG 57.396 47.368 0.00 0.00 0.00 5.87
883 920 1.893544 TCGACCACCGGCATTAAAAA 58.106 45.000 0.00 0.00 39.14 1.94
884 921 1.893544 TTCGACCACCGGCATTAAAA 58.106 45.000 0.00 0.00 39.14 1.52
885 922 1.893544 TTTCGACCACCGGCATTAAA 58.106 45.000 0.00 0.00 39.14 1.52
886 923 1.893544 TTTTCGACCACCGGCATTAA 58.106 45.000 0.00 0.00 39.14 1.40
887 924 1.807742 CTTTTTCGACCACCGGCATTA 59.192 47.619 0.00 0.00 39.14 1.90
888 925 0.596082 CTTTTTCGACCACCGGCATT 59.404 50.000 0.00 0.00 39.14 3.56
889 926 0.536460 ACTTTTTCGACCACCGGCAT 60.536 50.000 0.00 0.00 39.14 4.40
890 927 1.153127 ACTTTTTCGACCACCGGCA 60.153 52.632 0.00 0.00 39.14 5.69
891 928 1.281656 CACTTTTTCGACCACCGGC 59.718 57.895 0.00 0.00 39.14 6.13
892 929 0.584876 GACACTTTTTCGACCACCGG 59.415 55.000 0.00 0.00 39.14 5.28
893 930 1.260561 CAGACACTTTTTCGACCACCG 59.739 52.381 0.00 0.00 40.25 4.94
894 931 1.602377 CCAGACACTTTTTCGACCACC 59.398 52.381 0.00 0.00 0.00 4.61
895 932 1.602377 CCCAGACACTTTTTCGACCAC 59.398 52.381 0.00 0.00 0.00 4.16
896 933 1.476110 CCCCAGACACTTTTTCGACCA 60.476 52.381 0.00 0.00 0.00 4.02
897 934 1.235724 CCCCAGACACTTTTTCGACC 58.764 55.000 0.00 0.00 0.00 4.79
898 935 1.235724 CCCCCAGACACTTTTTCGAC 58.764 55.000 0.00 0.00 0.00 4.20
899 936 3.717842 CCCCCAGACACTTTTTCGA 57.282 52.632 0.00 0.00 0.00 3.71
931 968 2.906182 TAACAGCATCTCCAGCCGCG 62.906 60.000 0.00 0.00 0.00 6.46
932 969 1.153369 TAACAGCATCTCCAGCCGC 60.153 57.895 0.00 0.00 0.00 6.53
933 970 0.461548 TCTAACAGCATCTCCAGCCG 59.538 55.000 0.00 0.00 0.00 5.52
934 971 1.484240 AGTCTAACAGCATCTCCAGCC 59.516 52.381 0.00 0.00 0.00 4.85
935 972 2.977772 AGTCTAACAGCATCTCCAGC 57.022 50.000 0.00 0.00 0.00 4.85
936 973 4.642437 TCACTAGTCTAACAGCATCTCCAG 59.358 45.833 0.00 0.00 0.00 3.86
937 974 4.600062 TCACTAGTCTAACAGCATCTCCA 58.400 43.478 0.00 0.00 0.00 3.86
938 975 5.584253 TTCACTAGTCTAACAGCATCTCC 57.416 43.478 0.00 0.00 0.00 3.71
939 976 8.386606 CAAATTTCACTAGTCTAACAGCATCTC 58.613 37.037 0.00 0.00 0.00 2.75
940 977 8.097038 TCAAATTTCACTAGTCTAACAGCATCT 58.903 33.333 0.00 0.00 0.00 2.90
941 978 8.256611 TCAAATTTCACTAGTCTAACAGCATC 57.743 34.615 0.00 0.00 0.00 3.91
942 979 8.621532 TTCAAATTTCACTAGTCTAACAGCAT 57.378 30.769 0.00 0.00 0.00 3.79
943 980 7.715249 ACTTCAAATTTCACTAGTCTAACAGCA 59.285 33.333 0.00 0.00 0.00 4.41
944 981 8.089115 ACTTCAAATTTCACTAGTCTAACAGC 57.911 34.615 0.00 0.00 0.00 4.40
948 985 9.924650 GGAGTACTTCAAATTTCACTAGTCTAA 57.075 33.333 0.00 0.00 0.00 2.10
949 986 8.529476 GGGAGTACTTCAAATTTCACTAGTCTA 58.471 37.037 2.92 0.00 0.00 2.59
950 987 7.387643 GGGAGTACTTCAAATTTCACTAGTCT 58.612 38.462 2.92 0.00 0.00 3.24
951 988 6.310711 CGGGAGTACTTCAAATTTCACTAGTC 59.689 42.308 2.92 0.00 0.00 2.59
952 989 6.164176 CGGGAGTACTTCAAATTTCACTAGT 58.836 40.000 2.92 0.00 0.00 2.57
953 990 6.090898 CACGGGAGTACTTCAAATTTCACTAG 59.909 42.308 2.92 0.00 44.67 2.57
954 991 5.929992 CACGGGAGTACTTCAAATTTCACTA 59.070 40.000 2.92 0.00 44.67 2.74
955 992 4.755123 CACGGGAGTACTTCAAATTTCACT 59.245 41.667 2.92 0.00 44.67 3.41
956 993 4.612939 GCACGGGAGTACTTCAAATTTCAC 60.613 45.833 2.92 0.00 44.67 3.18
957 994 3.500680 GCACGGGAGTACTTCAAATTTCA 59.499 43.478 2.92 0.00 44.67 2.69
958 995 3.751698 AGCACGGGAGTACTTCAAATTTC 59.248 43.478 2.92 0.00 44.67 2.17
959 996 3.751518 AGCACGGGAGTACTTCAAATTT 58.248 40.909 2.92 0.00 44.67 1.82
960 997 3.418684 AGCACGGGAGTACTTCAAATT 57.581 42.857 2.92 0.00 44.67 1.82
961 998 3.074412 CAAGCACGGGAGTACTTCAAAT 58.926 45.455 2.92 0.00 42.60 2.32
962 999 2.158871 ACAAGCACGGGAGTACTTCAAA 60.159 45.455 2.92 0.00 42.60 2.69
963 1000 1.414919 ACAAGCACGGGAGTACTTCAA 59.585 47.619 2.92 0.00 42.60 2.69
964 1001 1.000506 GACAAGCACGGGAGTACTTCA 59.999 52.381 2.92 0.00 42.60 3.02
965 1002 1.272769 AGACAAGCACGGGAGTACTTC 59.727 52.381 0.00 0.00 42.60 3.01
966 1003 1.339097 AGACAAGCACGGGAGTACTT 58.661 50.000 0.00 0.00 46.94 2.24
967 1004 2.211250 TAGACAAGCACGGGAGTACT 57.789 50.000 0.00 0.00 44.67 2.73
968 1005 2.481449 CCATAGACAAGCACGGGAGTAC 60.481 54.545 0.00 0.00 44.67 2.73
969 1006 1.754803 CCATAGACAAGCACGGGAGTA 59.245 52.381 0.00 0.00 44.67 2.59
971 1008 0.179073 CCCATAGACAAGCACGGGAG 60.179 60.000 0.00 0.00 35.57 4.30
972 1009 1.904771 CCCATAGACAAGCACGGGA 59.095 57.895 0.00 0.00 35.57 5.14
973 1010 1.819632 GCCCATAGACAAGCACGGG 60.820 63.158 0.00 0.00 36.71 5.28
1013 1051 1.182385 GCCGGTTGGATTTGGTTGGA 61.182 55.000 1.90 0.00 37.49 3.53
1020 1058 0.395724 GAGGATGGCCGGTTGGATTT 60.396 55.000 1.90 0.00 39.96 2.17
1021 1059 1.227383 GAGGATGGCCGGTTGGATT 59.773 57.895 1.90 0.00 39.96 3.01
1022 1060 2.919043 GAGGATGGCCGGTTGGAT 59.081 61.111 1.90 0.00 39.96 3.41
1023 1061 3.781307 CGAGGATGGCCGGTTGGA 61.781 66.667 1.90 0.00 39.96 3.53
1024 1062 3.781307 TCGAGGATGGCCGGTTGG 61.781 66.667 1.90 0.00 39.96 3.77
1026 1064 3.000819 TGTCGAGGATGGCCGGTT 61.001 61.111 1.90 0.00 39.96 4.44
1027 1065 3.461773 CTGTCGAGGATGGCCGGT 61.462 66.667 1.90 0.00 39.96 5.28
1028 1066 3.432051 GACTGTCGAGGATGGCCGG 62.432 68.421 0.00 0.00 39.96 6.13
1029 1067 2.105128 GACTGTCGAGGATGGCCG 59.895 66.667 0.00 0.00 39.96 6.13
1030 1068 2.105128 CGACTGTCGAGGATGGCC 59.895 66.667 24.86 0.00 43.74 5.36
1128 1187 1.619332 GGAGTCTTCTTCCGAACTGGT 59.381 52.381 0.00 0.00 39.52 4.00
1148 1207 1.677637 GGGAGGTAGAGGAACCGCTG 61.678 65.000 7.33 0.00 44.77 5.18
1195 1254 2.030562 CCGATTCCGATTCCCCCG 59.969 66.667 0.00 0.00 38.22 5.73
1298 1360 3.805891 GAGCTGCGGATCAGGCTCC 62.806 68.421 5.77 2.89 43.06 4.70
1315 1377 2.435938 GTGGATTCTTGGCCGCGA 60.436 61.111 8.23 0.00 0.00 5.87
1381 1443 2.159393 CCATTTTGATGTACTGGTGCCG 60.159 50.000 0.00 0.00 0.00 5.69
1391 1453 4.326826 TCTTCTTCTCGCCATTTTGATGT 58.673 39.130 0.00 0.00 0.00 3.06
1417 1479 0.742635 TGCCGATTCGCTATGTTGCA 60.743 50.000 0.00 0.08 0.00 4.08
1426 1488 1.582610 TTTGGGTTCTGCCGATTCGC 61.583 55.000 0.00 0.00 38.44 4.70
1429 1491 1.241315 CGGTTTGGGTTCTGCCGATT 61.241 55.000 0.00 0.00 44.57 3.34
1447 1509 0.795735 CATGCGCCTGCTTTTCTTCG 60.796 55.000 4.18 0.00 43.34 3.79
1448 1510 0.242017 ACATGCGCCTGCTTTTCTTC 59.758 50.000 12.92 0.00 43.34 2.87
1450 1512 1.582968 CACATGCGCCTGCTTTTCT 59.417 52.632 12.92 0.00 43.34 2.52
1476 1538 1.096416 AGAATCAGGACCTCGTCGTC 58.904 55.000 0.00 0.00 32.65 4.20
1519 1581 2.356278 GCACCTTCCCATGCTGGA 59.644 61.111 4.00 0.00 40.96 3.86
1547 1609 2.095161 AGACTCAAAGAAGGCGTAGTCG 60.095 50.000 0.00 0.00 38.65 4.18
1604 1666 6.031471 GCGAACTTTCTCCTTTACAACAAAA 58.969 36.000 0.00 0.00 0.00 2.44
1613 1675 1.143073 AGGGTGCGAACTTTCTCCTTT 59.857 47.619 0.00 0.00 0.00 3.11
1646 1708 6.019237 CCGTGACAGATAAGATGTGAGATTTG 60.019 42.308 0.00 0.00 0.00 2.32
1652 1714 3.130516 GGTCCGTGACAGATAAGATGTGA 59.869 47.826 6.41 0.00 33.68 3.58
1661 1723 3.493350 GCTTATCATGGTCCGTGACAGAT 60.493 47.826 16.26 3.12 31.87 2.90
1665 1727 1.209128 CGCTTATCATGGTCCGTGAC 58.791 55.000 16.26 2.82 31.87 3.67
1709 1771 1.002868 CACCTGCAAGTCTCCCCAG 60.003 63.158 0.00 0.00 0.00 4.45
1724 1786 0.032952 TAATAGCGCCATCGGTCACC 59.967 55.000 2.29 0.00 46.03 4.02
1737 1799 3.709987 CCTGTTTGCTGCCATTAATAGC 58.290 45.455 0.00 0.00 37.93 2.97
1760 1822 2.125912 ATGGCACCCTCACCCTCT 59.874 61.111 0.00 0.00 0.00 3.69
1765 1827 1.377725 CTCACCATGGCACCCTCAC 60.378 63.158 13.04 0.00 0.00 3.51
1814 1876 2.185310 TTTCCTCGAAGCTCCTGGGC 62.185 60.000 0.00 0.00 0.00 5.36
1815 1877 0.543749 ATTTCCTCGAAGCTCCTGGG 59.456 55.000 0.00 0.00 0.00 4.45
1858 1920 0.809241 GAGCATCTTCACCTCCTGCG 60.809 60.000 0.00 0.00 37.88 5.18
1861 1923 1.519719 GCGAGCATCTTCACCTCCT 59.480 57.895 0.00 0.00 0.00 3.69
2018 2080 6.054860 AGCTTCTCACTAATCTTTGCCTTA 57.945 37.500 0.00 0.00 0.00 2.69
2044 2106 0.537188 AACCTATGTGAGCAGACGGG 59.463 55.000 0.00 0.00 0.00 5.28
2081 2143 4.402474 CACAAAACAGGGGAGACTCTTTTT 59.598 41.667 1.74 0.00 38.96 1.94
2082 2144 3.954258 CACAAAACAGGGGAGACTCTTTT 59.046 43.478 1.74 0.00 38.96 2.27
2083 2145 3.555966 CACAAAACAGGGGAGACTCTTT 58.444 45.455 1.74 0.00 38.96 2.52
2084 2146 2.158608 CCACAAAACAGGGGAGACTCTT 60.159 50.000 1.74 0.00 38.96 2.85
2086 2148 1.545651 CCCACAAAACAGGGGAGACTC 60.546 57.143 0.00 0.00 45.08 3.36
2087 2149 0.478507 CCCACAAAACAGGGGAGACT 59.521 55.000 0.00 0.00 45.08 3.24
2088 2150 1.179174 GCCCACAAAACAGGGGAGAC 61.179 60.000 0.00 0.00 45.08 3.36
2089 2151 1.152830 GCCCACAAAACAGGGGAGA 59.847 57.895 0.00 0.00 45.08 3.71
2090 2152 0.758685 TTGCCCACAAAACAGGGGAG 60.759 55.000 0.00 0.00 46.67 4.30
2091 2153 0.758685 CTTGCCCACAAAACAGGGGA 60.759 55.000 0.00 0.00 45.08 4.81
2092 2154 1.747774 CTTGCCCACAAAACAGGGG 59.252 57.895 0.00 0.00 45.58 4.79
2094 2156 0.177604 TTGCTTGCCCACAAAACAGG 59.822 50.000 0.00 0.00 34.74 4.00
2095 2157 1.136695 TCTTGCTTGCCCACAAAACAG 59.863 47.619 0.00 0.00 34.74 3.16
2096 2158 1.134848 GTCTTGCTTGCCCACAAAACA 60.135 47.619 0.00 0.00 34.74 2.83
2097 2159 1.134848 TGTCTTGCTTGCCCACAAAAC 60.135 47.619 0.00 0.00 34.74 2.43
2098 2160 1.189752 TGTCTTGCTTGCCCACAAAA 58.810 45.000 0.00 0.00 34.74 2.44
2099 2161 1.136695 CTTGTCTTGCTTGCCCACAAA 59.863 47.619 0.00 0.00 34.74 2.83
2100 2162 0.746063 CTTGTCTTGCTTGCCCACAA 59.254 50.000 0.00 0.00 0.00 3.33
2101 2163 1.108727 CCTTGTCTTGCTTGCCCACA 61.109 55.000 0.00 0.00 0.00 4.17
2102 2164 1.662044 CCTTGTCTTGCTTGCCCAC 59.338 57.895 0.00 0.00 0.00 4.61
2103 2165 1.531365 CCCTTGTCTTGCTTGCCCA 60.531 57.895 0.00 0.00 0.00 5.36
2104 2166 0.251165 TACCCTTGTCTTGCTTGCCC 60.251 55.000 0.00 0.00 0.00 5.36
2105 2167 1.474077 CATACCCTTGTCTTGCTTGCC 59.526 52.381 0.00 0.00 0.00 4.52
2106 2168 2.436417 TCATACCCTTGTCTTGCTTGC 58.564 47.619 0.00 0.00 0.00 4.01
2107 2169 4.074970 AGTTCATACCCTTGTCTTGCTTG 58.925 43.478 0.00 0.00 0.00 4.01
2108 2170 4.373156 AGTTCATACCCTTGTCTTGCTT 57.627 40.909 0.00 0.00 0.00 3.91
2109 2171 5.189736 TCATAGTTCATACCCTTGTCTTGCT 59.810 40.000 0.00 0.00 0.00 3.91
2110 2172 5.428253 TCATAGTTCATACCCTTGTCTTGC 58.572 41.667 0.00 0.00 0.00 4.01
2111 2173 6.540189 CCTTCATAGTTCATACCCTTGTCTTG 59.460 42.308 0.00 0.00 0.00 3.02
2112 2174 6.215636 ACCTTCATAGTTCATACCCTTGTCTT 59.784 38.462 0.00 0.00 0.00 3.01
2113 2175 5.726793 ACCTTCATAGTTCATACCCTTGTCT 59.273 40.000 0.00 0.00 0.00 3.41
2114 2176 5.990668 ACCTTCATAGTTCATACCCTTGTC 58.009 41.667 0.00 0.00 0.00 3.18
2115 2177 7.347222 TCATACCTTCATAGTTCATACCCTTGT 59.653 37.037 0.00 0.00 0.00 3.16
2116 2178 7.735917 TCATACCTTCATAGTTCATACCCTTG 58.264 38.462 0.00 0.00 0.00 3.61
2117 2179 7.789831 TCTCATACCTTCATAGTTCATACCCTT 59.210 37.037 0.00 0.00 0.00 3.95
2118 2180 7.306013 TCTCATACCTTCATAGTTCATACCCT 58.694 38.462 0.00 0.00 0.00 4.34
2119 2181 7.540474 TCTCATACCTTCATAGTTCATACCC 57.460 40.000 0.00 0.00 0.00 3.69
2123 2185 9.664332 GCATTATCTCATACCTTCATAGTTCAT 57.336 33.333 0.00 0.00 0.00 2.57
2124 2186 8.097038 GGCATTATCTCATACCTTCATAGTTCA 58.903 37.037 0.00 0.00 0.00 3.18
2125 2187 8.097038 TGGCATTATCTCATACCTTCATAGTTC 58.903 37.037 0.00 0.00 0.00 3.01
2126 2188 7.977818 TGGCATTATCTCATACCTTCATAGTT 58.022 34.615 0.00 0.00 0.00 2.24
2127 2189 7.559335 TGGCATTATCTCATACCTTCATAGT 57.441 36.000 0.00 0.00 0.00 2.12
2161 2311 9.705290 GCTTCAAAAGGAAAATAATAAGAACCA 57.295 29.630 0.00 0.00 34.44 3.67
2162 2312 9.705290 TGCTTCAAAAGGAAAATAATAAGAACC 57.295 29.630 0.00 0.00 34.44 3.62
2165 2315 9.912634 CTGTGCTTCAAAAGGAAAATAATAAGA 57.087 29.630 0.00 0.00 34.44 2.10
2166 2316 9.696917 ACTGTGCTTCAAAAGGAAAATAATAAG 57.303 29.630 0.00 0.00 34.44 1.73
2189 2339 4.860907 GTGAAGCCAATATGAAGCAAACTG 59.139 41.667 0.00 0.00 0.00 3.16
2195 2345 3.445096 ACCAAGTGAAGCCAATATGAAGC 59.555 43.478 0.00 0.00 0.00 3.86
2212 2362 0.187361 TCCCTTCCCCAACAACCAAG 59.813 55.000 0.00 0.00 0.00 3.61
2223 2373 2.025321 TCATTAGCACCTTTCCCTTCCC 60.025 50.000 0.00 0.00 0.00 3.97
2229 2379 5.842907 ACTTTTGTTCATTAGCACCTTTCC 58.157 37.500 0.00 0.00 0.00 3.13
2230 2380 6.861572 GGTACTTTTGTTCATTAGCACCTTTC 59.138 38.462 0.00 0.00 0.00 2.62
2234 2384 5.699097 TGGTACTTTTGTTCATTAGCACC 57.301 39.130 0.00 0.00 0.00 5.01
2235 2385 8.587952 AAAATGGTACTTTTGTTCATTAGCAC 57.412 30.769 0.00 0.00 35.57 4.40
2236 2386 7.870445 GGAAAATGGTACTTTTGTTCATTAGCA 59.130 33.333 0.00 0.00 35.57 3.49
2237 2387 7.330946 GGGAAAATGGTACTTTTGTTCATTAGC 59.669 37.037 0.00 0.00 35.57 3.09
2238 2388 8.364142 TGGGAAAATGGTACTTTTGTTCATTAG 58.636 33.333 0.00 0.00 35.57 1.73
2239 2389 8.145122 GTGGGAAAATGGTACTTTTGTTCATTA 58.855 33.333 0.00 0.00 35.57 1.90
2240 2390 6.989759 GTGGGAAAATGGTACTTTTGTTCATT 59.010 34.615 0.00 0.00 36.99 2.57
2241 2391 6.326323 AGTGGGAAAATGGTACTTTTGTTCAT 59.674 34.615 0.00 0.00 0.00 2.57
2242 2392 5.659079 AGTGGGAAAATGGTACTTTTGTTCA 59.341 36.000 0.00 0.00 0.00 3.18
2243 2393 6.156748 AGTGGGAAAATGGTACTTTTGTTC 57.843 37.500 0.00 0.00 0.00 3.18
2244 2394 6.553953 AAGTGGGAAAATGGTACTTTTGTT 57.446 33.333 0.00 0.00 0.00 2.83
2246 2396 6.816136 AGAAAGTGGGAAAATGGTACTTTTG 58.184 36.000 0.00 0.00 40.50 2.44
2248 2398 7.783119 ACTAAGAAAGTGGGAAAATGGTACTTT 59.217 33.333 0.00 0.00 42.39 2.66
2249 2399 7.295340 ACTAAGAAAGTGGGAAAATGGTACTT 58.705 34.615 0.00 0.00 36.93 2.24
2250 2400 6.849151 ACTAAGAAAGTGGGAAAATGGTACT 58.151 36.000 0.00 0.00 36.93 2.73
2251 2401 8.625786 TTACTAAGAAAGTGGGAAAATGGTAC 57.374 34.615 0.00 0.00 39.39 3.34
2254 2404 6.434340 AGCTTACTAAGAAAGTGGGAAAATGG 59.566 38.462 0.00 0.00 39.39 3.16
2255 2405 7.454260 AGCTTACTAAGAAAGTGGGAAAATG 57.546 36.000 0.00 0.00 39.39 2.32
2256 2406 9.755122 ATTAGCTTACTAAGAAAGTGGGAAAAT 57.245 29.630 0.00 0.00 41.60 1.82
2257 2407 9.582648 AATTAGCTTACTAAGAAAGTGGGAAAA 57.417 29.630 0.00 0.00 41.60 2.29
2259 2409 9.662947 GTAATTAGCTTACTAAGAAAGTGGGAA 57.337 33.333 0.00 0.00 41.60 3.97
2260 2410 9.043548 AGTAATTAGCTTACTAAGAAAGTGGGA 57.956 33.333 0.00 0.00 46.56 4.37
2280 3529 7.152645 ACATCTTGTACGTGTTGAGAGTAATT 58.847 34.615 0.00 0.00 0.00 1.40
2288 3537 9.790389 AATTTTAAAACATCTTGTACGTGTTGA 57.210 25.926 1.97 0.00 36.31 3.18
2289 3538 9.828220 CAATTTTAAAACATCTTGTACGTGTTG 57.172 29.630 1.97 0.00 36.31 3.33
2321 3570 7.856556 GCTAATGCTTCTCAAGATTAGGTAAC 58.143 38.462 0.00 0.00 33.75 2.50
2359 3608 8.968969 GTTTCCCTCTAATCAAGACTCTAACTA 58.031 37.037 0.00 0.00 0.00 2.24
2360 3609 7.455008 TGTTTCCCTCTAATCAAGACTCTAACT 59.545 37.037 0.00 0.00 0.00 2.24
2361 3610 7.612677 TGTTTCCCTCTAATCAAGACTCTAAC 58.387 38.462 0.00 0.00 0.00 2.34
2363 3612 7.979786 ATGTTTCCCTCTAATCAAGACTCTA 57.020 36.000 0.00 0.00 0.00 2.43
2364 3613 6.882768 ATGTTTCCCTCTAATCAAGACTCT 57.117 37.500 0.00 0.00 0.00 3.24
2365 3614 9.267084 GAATATGTTTCCCTCTAATCAAGACTC 57.733 37.037 0.00 0.00 0.00 3.36
2366 3615 8.772250 TGAATATGTTTCCCTCTAATCAAGACT 58.228 33.333 0.00 0.00 0.00 3.24
2367 3616 8.831550 GTGAATATGTTTCCCTCTAATCAAGAC 58.168 37.037 0.00 0.00 0.00 3.01
2368 3617 8.772250 AGTGAATATGTTTCCCTCTAATCAAGA 58.228 33.333 0.00 0.00 0.00 3.02
2369 3618 8.970859 AGTGAATATGTTTCCCTCTAATCAAG 57.029 34.615 0.00 0.00 0.00 3.02
2437 3686 6.238842 GCACATGCTGTCCTATACATTTCAAT 60.239 38.462 0.00 0.00 37.50 2.57
2438 3687 5.066375 GCACATGCTGTCCTATACATTTCAA 59.934 40.000 0.00 0.00 37.50 2.69
2439 3688 4.576053 GCACATGCTGTCCTATACATTTCA 59.424 41.667 0.00 0.00 37.50 2.69
2440 3689 4.576053 TGCACATGCTGTCCTATACATTTC 59.424 41.667 5.31 0.00 42.66 2.17
2441 3690 4.525996 TGCACATGCTGTCCTATACATTT 58.474 39.130 5.31 0.00 42.66 2.32
2442 3691 4.155063 TGCACATGCTGTCCTATACATT 57.845 40.909 5.31 0.00 42.66 2.71
2443 3692 3.843893 TGCACATGCTGTCCTATACAT 57.156 42.857 5.31 0.00 42.66 2.29
2455 3704 5.409643 AAGACGACTAATTATGCACATGC 57.590 39.130 0.00 0.00 42.50 4.06
2460 3709 6.459670 TGTAGGAAGACGACTAATTATGCA 57.540 37.500 0.00 0.00 0.00 3.96
2461 3710 7.948278 AATGTAGGAAGACGACTAATTATGC 57.052 36.000 0.00 0.00 0.00 3.14
2470 3719 6.740110 AGATGACATAATGTAGGAAGACGAC 58.260 40.000 0.00 0.00 0.00 4.34
2472 3721 8.568794 TCTTAGATGACATAATGTAGGAAGACG 58.431 37.037 0.00 0.00 0.00 4.18
2495 3744 6.699575 AGTGTGCTACAACTCATTTTTCTT 57.300 33.333 0.00 0.00 0.00 2.52
2499 3748 9.448438 TCATATTAGTGTGCTACAACTCATTTT 57.552 29.630 0.00 0.00 0.00 1.82
2524 3773 4.755123 TGCCTGCTTACTCAACTAAACTTC 59.245 41.667 0.00 0.00 0.00 3.01
2528 3777 5.627499 CAATGCCTGCTTACTCAACTAAA 57.373 39.130 0.00 0.00 0.00 1.85
2544 3793 1.005294 CGTGAGTTTGCTGCAATGCC 61.005 55.000 16.77 7.44 0.00 4.40
2562 3811 6.968131 ATGGATTCGACAATAACCATATCG 57.032 37.500 0.00 0.00 36.54 2.92
2598 3848 6.091718 ACTTCTTTTGTAGTGGTCTCTCTC 57.908 41.667 0.00 0.00 0.00 3.20
2603 3853 6.496144 ACCTTACTTCTTTTGTAGTGGTCT 57.504 37.500 0.00 0.00 32.31 3.85
2667 3917 3.871594 GGGACATCAATCGAGAAATCGTT 59.128 43.478 0.00 0.00 0.00 3.85
2677 3927 5.243954 TCATAAGGTAGAGGGACATCAATCG 59.756 44.000 0.00 0.00 0.00 3.34
2710 3960 6.367695 ACTTTTGTTTTGCAGTACTTGGAAAC 59.632 34.615 13.74 13.74 45.26 2.78
2739 3989 8.560124 AGATGGAAAGAACCTAGAATCACTAT 57.440 34.615 0.00 0.00 0.00 2.12
2757 4007 7.114754 GGATGGATGAATAAGCATAGATGGAA 58.885 38.462 0.00 0.00 0.00 3.53
2779 4029 9.603921 GGATTTGATTGTTAATTTGACATGGAT 57.396 29.630 0.00 0.00 0.00 3.41
2813 4063 9.715119 TGGCATATATAGATAGGTGACAATACT 57.285 33.333 0.00 0.00 0.00 2.12
2822 4072 6.634041 TGGGCTATGGCATATATAGATAGGT 58.366 40.000 7.81 0.00 40.87 3.08
2863 4113 4.564821 CCCGATCAGGTTTTCCAGAACTAA 60.565 45.833 0.00 0.00 43.73 2.24
2882 4132 4.035112 AGTTTAGGTGGTAATGATCCCGA 58.965 43.478 0.00 0.00 0.00 5.14
2885 4135 6.537660 GTGTACAGTTTAGGTGGTAATGATCC 59.462 42.308 0.00 0.00 0.00 3.36
2917 4167 5.353123 GTCTTCGATGGCCAACTGTTTAATA 59.647 40.000 10.96 0.00 0.00 0.98
2936 4186 7.045126 ACAGTAGTAATCCAGCATAGTCTTC 57.955 40.000 0.00 0.00 0.00 2.87
2961 4211 8.764558 TGGTGTAACTAAACAGTCCATATATGT 58.235 33.333 11.73 0.00 36.74 2.29
3010 4260 8.182227 GCTTTCCAATACAATTAGGACTACAAC 58.818 37.037 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.