Multiple sequence alignment - TraesCS3B01G118700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G118700 chr3B 100.000 2597 0 0 1 2597 87719530 87716934 0.000000e+00 4796.0
1 TraesCS3B01G118700 chr3B 94.556 1249 51 6 959 2193 88202598 88201353 0.000000e+00 1914.0
2 TraesCS3B01G118700 chr3B 84.242 1009 109 29 618 1610 85340804 85339830 0.000000e+00 937.0
3 TraesCS3B01G118700 chr3B 84.987 786 88 21 968 1730 85237832 85237054 0.000000e+00 771.0
4 TraesCS3B01G118700 chr3B 78.355 693 98 38 324 989 88203293 88202626 4.030000e-108 401.0
5 TraesCS3B01G118700 chr3B 94.054 185 11 0 2413 2597 87691717 87691533 5.470000e-72 281.0
6 TraesCS3B01G118700 chr3B 82.286 175 29 2 618 791 85239905 85239732 1.610000e-32 150.0
7 TraesCS3B01G118700 chr3B 97.101 69 1 1 2038 2106 88201442 88201375 5.870000e-22 115.0
8 TraesCS3B01G118700 chr3B 97.015 67 2 0 2038 2104 87717424 87717358 2.110000e-21 113.0
9 TraesCS3B01G118700 chr3B 97.015 67 2 0 2107 2173 87717493 87717427 2.110000e-21 113.0
10 TraesCS3B01G118700 chr3B 95.588 68 3 0 2107 2174 88201511 88201444 2.730000e-20 110.0
11 TraesCS3B01G118700 chr3B 82.609 92 8 7 135 224 699099135 699099220 9.970000e-10 75.0
12 TraesCS3B01G118700 chr3D 87.090 1464 142 30 632 2076 56350671 56349236 0.000000e+00 1613.0
13 TraesCS3B01G118700 chr3D 85.741 1073 96 29 1043 2086 56312571 56311527 0.000000e+00 1081.0
14 TraesCS3B01G118700 chr3D 93.769 642 38 2 971 1610 56282328 56281687 0.000000e+00 963.0
15 TraesCS3B01G118700 chr3D 80.857 1050 152 31 618 1646 55350330 55349309 0.000000e+00 780.0
16 TraesCS3B01G118700 chr3D 86.035 623 53 15 324 920 56414847 56414233 2.820000e-179 638.0
17 TraesCS3B01G118700 chr3D 80.332 422 58 20 667 1068 56446946 56446530 1.950000e-76 296.0
18 TraesCS3B01G118700 chr3D 89.868 227 19 2 717 939 56282554 56282328 3.270000e-74 289.0
19 TraesCS3B01G118700 chr3D 89.868 227 19 2 717 939 56296509 56296283 3.270000e-74 289.0
20 TraesCS3B01G118700 chr3D 83.333 312 25 11 324 615 56298096 56297792 1.980000e-66 263.0
21 TraesCS3B01G118700 chr3D 86.531 245 15 4 324 555 56357569 56357330 1.190000e-63 254.0
22 TraesCS3B01G118700 chr3D 81.994 311 30 10 324 615 56284154 56283851 9.290000e-60 241.0
23 TraesCS3B01G118700 chr3D 93.382 136 8 1 1 135 607358225 607358360 1.580000e-47 200.0
24 TraesCS3B01G118700 chr3D 81.818 209 18 9 2107 2298 56311574 56311369 9.620000e-35 158.0
25 TraesCS3B01G118700 chr3D 82.286 175 29 2 618 791 55943581 55943754 1.610000e-32 150.0
26 TraesCS3B01G118700 chr3D 100.000 37 0 0 2107 2143 56349274 56349238 4.640000e-08 69.4
27 TraesCS3B01G118700 chr3A 91.815 672 53 2 937 1608 65829522 65828853 0.000000e+00 935.0
28 TraesCS3B01G118700 chr3A 86.569 685 85 6 964 1646 65700802 65700123 0.000000e+00 749.0
29 TraesCS3B01G118700 chr3A 86.657 682 84 6 964 1643 65765657 65766333 0.000000e+00 749.0
30 TraesCS3B01G118700 chr3A 86.835 357 34 7 462 816 65829906 65829561 1.130000e-103 387.0
31 TraesCS3B01G118700 chr5B 93.514 185 10 2 2413 2597 145773426 145773244 9.160000e-70 274.0
32 TraesCS3B01G118700 chr5B 91.803 183 13 2 2413 2595 145760558 145760378 1.190000e-63 254.0
33 TraesCS3B01G118700 chr5B 90.957 188 15 2 2410 2597 63035782 63035967 4.290000e-63 252.0
34 TraesCS3B01G118700 chr6B 92.105 190 12 3 2410 2597 446698610 446698798 5.510000e-67 265.0
35 TraesCS3B01G118700 chr6B 91.351 185 14 2 2413 2597 271453795 271453613 4.290000e-63 252.0
36 TraesCS3B01G118700 chr6B 90.957 188 15 2 2410 2597 461930011 461930196 4.290000e-63 252.0
37 TraesCS3B01G118700 chr2D 79.118 431 42 24 1553 1955 640382260 640381850 1.190000e-63 254.0
38 TraesCS3B01G118700 chr2D 86.034 179 23 1 146 322 71835991 71836169 9.490000e-45 191.0
39 TraesCS3B01G118700 chr7B 91.351 185 14 2 2413 2597 359491639 359491457 4.290000e-63 252.0
40 TraesCS3B01G118700 chr7B 91.351 185 13 3 2413 2597 359478896 359478715 1.540000e-62 250.0
41 TraesCS3B01G118700 chr1B 94.161 137 7 1 1 136 252324735 252324599 9.420000e-50 207.0
42 TraesCS3B01G118700 chr1B 92.199 141 10 1 1 140 668206505 668206365 5.670000e-47 198.0
43 TraesCS3B01G118700 chr1B 81.517 211 33 5 137 344 238128245 238128038 4.440000e-38 169.0
44 TraesCS3B01G118700 chr1A 93.478 138 8 1 1 137 536940121 536940258 1.220000e-48 204.0
45 TraesCS3B01G118700 chr1A 89.308 159 16 1 1 158 420381228 420381070 5.670000e-47 198.0
46 TraesCS3B01G118700 chr1A 91.791 134 10 1 1 133 376346395 376346528 4.410000e-43 185.0
47 TraesCS3B01G118700 chr2B 92.806 139 9 1 1 138 198447816 198447678 1.580000e-47 200.0
48 TraesCS3B01G118700 chr5D 85.714 189 23 3 137 322 398636487 398636674 2.040000e-46 196.0
49 TraesCS3B01G118700 chr5D 76.871 147 24 8 157 298 463404501 463404360 9.970000e-10 75.0
50 TraesCS3B01G118700 chr1D 92.647 136 10 0 1 136 111042200 111042065 2.040000e-46 196.0
51 TraesCS3B01G118700 chr7D 90.411 146 11 3 1 145 373893529 373893386 3.410000e-44 189.0
52 TraesCS3B01G118700 chr7D 82.812 192 28 3 137 326 134775483 134775671 1.600000e-37 167.0
53 TraesCS3B01G118700 chr6A 82.514 183 30 1 146 326 129460261 129460079 2.670000e-35 159.0
54 TraesCS3B01G118700 chr6A 82.105 190 28 4 137 322 554515595 554515408 9.620000e-35 158.0
55 TraesCS3B01G118700 chr4A 81.437 167 26 4 156 322 714560666 714560827 5.830000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G118700 chr3B 87716934 87719530 2596 True 1674.000000 4796 98.010000 1 2597 3 chr3B.!!$R4 2596
1 TraesCS3B01G118700 chr3B 85339830 85340804 974 True 937.000000 937 84.242000 618 1610 1 chr3B.!!$R1 992
2 TraesCS3B01G118700 chr3B 88201353 88203293 1940 True 635.000000 1914 91.400000 324 2193 4 chr3B.!!$R5 1869
3 TraesCS3B01G118700 chr3B 85237054 85239905 2851 True 460.500000 771 83.636500 618 1730 2 chr3B.!!$R3 1112
4 TraesCS3B01G118700 chr3D 56349236 56350671 1435 True 841.200000 1613 93.545000 632 2143 2 chr3D.!!$R8 1511
5 TraesCS3B01G118700 chr3D 55349309 55350330 1021 True 780.000000 780 80.857000 618 1646 1 chr3D.!!$R1 1028
6 TraesCS3B01G118700 chr3D 56414233 56414847 614 True 638.000000 638 86.035000 324 920 1 chr3D.!!$R3 596
7 TraesCS3B01G118700 chr3D 56311369 56312571 1202 True 619.500000 1081 83.779500 1043 2298 2 chr3D.!!$R7 1255
8 TraesCS3B01G118700 chr3D 56281687 56284154 2467 True 497.666667 963 88.543667 324 1610 3 chr3D.!!$R5 1286
9 TraesCS3B01G118700 chr3D 56296283 56298096 1813 True 276.000000 289 86.600500 324 939 2 chr3D.!!$R6 615
10 TraesCS3B01G118700 chr3A 65700123 65700802 679 True 749.000000 749 86.569000 964 1646 1 chr3A.!!$R1 682
11 TraesCS3B01G118700 chr3A 65765657 65766333 676 False 749.000000 749 86.657000 964 1643 1 chr3A.!!$F1 679
12 TraesCS3B01G118700 chr3A 65828853 65829906 1053 True 661.000000 935 89.325000 462 1608 2 chr3A.!!$R2 1146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 1974 0.035458 CCAGAGGTTCAGTGGGTCAC 59.965 60.0 0.0 0.0 34.1 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2326 5591 0.032815 CGGAACAAATGGGCCGTTTT 59.967 50.0 20.95 8.07 38.99 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.592885 AAATCCTATGATGTGAATCAAAGGG 57.407 36.000 0.00 0.00 33.83 3.95
27 28 4.464008 TCCTATGATGTGAATCAAAGGGC 58.536 43.478 0.00 0.00 33.83 5.19
28 29 4.079844 TCCTATGATGTGAATCAAAGGGCA 60.080 41.667 0.00 0.00 33.83 5.36
29 30 4.831155 CCTATGATGTGAATCAAAGGGCAT 59.169 41.667 0.00 0.00 33.83 4.40
30 31 4.931661 ATGATGTGAATCAAAGGGCATC 57.068 40.909 4.45 4.45 33.83 3.91
31 32 3.972133 TGATGTGAATCAAAGGGCATCT 58.028 40.909 10.68 0.00 35.22 2.90
32 33 3.949754 TGATGTGAATCAAAGGGCATCTC 59.050 43.478 10.68 0.00 35.22 2.75
33 34 2.726821 TGTGAATCAAAGGGCATCTCC 58.273 47.619 0.00 0.00 0.00 3.71
34 35 2.041485 TGTGAATCAAAGGGCATCTCCA 59.959 45.455 0.00 0.00 36.21 3.86
35 36 3.294214 GTGAATCAAAGGGCATCTCCAT 58.706 45.455 0.00 0.00 36.21 3.41
36 37 3.703052 GTGAATCAAAGGGCATCTCCATT 59.297 43.478 0.00 0.00 41.28 3.16
38 39 4.403432 TGAATCAAAGGGCATCTCCATTTC 59.597 41.667 0.00 0.00 44.84 2.17
39 40 3.744940 TCAAAGGGCATCTCCATTTCT 57.255 42.857 0.00 0.00 44.84 2.52
40 41 4.860802 TCAAAGGGCATCTCCATTTCTA 57.139 40.909 0.00 0.00 44.84 2.10
41 42 5.393068 TCAAAGGGCATCTCCATTTCTAT 57.607 39.130 0.00 0.00 44.84 1.98
42 43 5.769835 TCAAAGGGCATCTCCATTTCTATT 58.230 37.500 0.00 0.00 44.84 1.73
43 44 6.197168 TCAAAGGGCATCTCCATTTCTATTT 58.803 36.000 0.00 0.00 44.84 1.40
44 45 6.322201 TCAAAGGGCATCTCCATTTCTATTTC 59.678 38.462 0.00 0.00 44.84 2.17
45 46 5.659849 AGGGCATCTCCATTTCTATTTCT 57.340 39.130 0.00 0.00 36.21 2.52
46 47 6.770286 AGGGCATCTCCATTTCTATTTCTA 57.230 37.500 0.00 0.00 36.21 2.10
47 48 6.538263 AGGGCATCTCCATTTCTATTTCTAC 58.462 40.000 0.00 0.00 36.21 2.59
48 49 6.331307 AGGGCATCTCCATTTCTATTTCTACT 59.669 38.462 0.00 0.00 36.21 2.57
49 50 6.652900 GGGCATCTCCATTTCTATTTCTACTC 59.347 42.308 0.00 0.00 36.21 2.59
50 51 7.220030 GGCATCTCCATTTCTATTTCTACTCA 58.780 38.462 0.00 0.00 34.01 3.41
51 52 7.882271 GGCATCTCCATTTCTATTTCTACTCAT 59.118 37.037 0.00 0.00 34.01 2.90
52 53 9.935241 GCATCTCCATTTCTATTTCTACTCATA 57.065 33.333 0.00 0.00 0.00 2.15
55 56 9.883293 TCTCCATTTCTATTTCTACTCATAGGA 57.117 33.333 0.00 0.00 0.00 2.94
90 91 9.458727 ACATGTCATCTCATTTTCTATGACTTT 57.541 29.630 13.59 1.75 45.40 2.66
93 94 8.950210 TGTCATCTCATTTTCTATGACTTTTCC 58.050 33.333 13.59 0.00 45.40 3.13
94 95 8.950210 GTCATCTCATTTTCTATGACTTTTCCA 58.050 33.333 0.00 0.00 43.07 3.53
95 96 9.690913 TCATCTCATTTTCTATGACTTTTCCAT 57.309 29.630 0.00 0.00 0.00 3.41
98 99 8.960591 TCTCATTTTCTATGACTTTTCCATTCC 58.039 33.333 0.00 0.00 0.00 3.01
99 100 8.884124 TCATTTTCTATGACTTTTCCATTCCT 57.116 30.769 0.00 0.00 0.00 3.36
100 101 9.973661 TCATTTTCTATGACTTTTCCATTCCTA 57.026 29.630 0.00 0.00 0.00 2.94
102 103 7.843490 TTTCTATGACTTTTCCATTCCTACG 57.157 36.000 0.00 0.00 0.00 3.51
103 104 6.785337 TCTATGACTTTTCCATTCCTACGA 57.215 37.500 0.00 0.00 0.00 3.43
104 105 7.361457 TCTATGACTTTTCCATTCCTACGAT 57.639 36.000 0.00 0.00 0.00 3.73
105 106 7.792032 TCTATGACTTTTCCATTCCTACGATT 58.208 34.615 0.00 0.00 0.00 3.34
106 107 8.265055 TCTATGACTTTTCCATTCCTACGATTT 58.735 33.333 0.00 0.00 0.00 2.17
107 108 7.703058 ATGACTTTTCCATTCCTACGATTTT 57.297 32.000 0.00 0.00 0.00 1.82
108 109 7.141100 TGACTTTTCCATTCCTACGATTTTC 57.859 36.000 0.00 0.00 0.00 2.29
109 110 6.150474 TGACTTTTCCATTCCTACGATTTTCC 59.850 38.462 0.00 0.00 0.00 3.13
110 111 6.246163 ACTTTTCCATTCCTACGATTTTCCT 58.754 36.000 0.00 0.00 0.00 3.36
111 112 7.399634 ACTTTTCCATTCCTACGATTTTCCTA 58.600 34.615 0.00 0.00 0.00 2.94
112 113 7.336176 ACTTTTCCATTCCTACGATTTTCCTAC 59.664 37.037 0.00 0.00 0.00 3.18
113 114 5.286267 TCCATTCCTACGATTTTCCTACC 57.714 43.478 0.00 0.00 0.00 3.18
114 115 4.966805 TCCATTCCTACGATTTTCCTACCT 59.033 41.667 0.00 0.00 0.00 3.08
115 116 6.138263 TCCATTCCTACGATTTTCCTACCTA 58.862 40.000 0.00 0.00 0.00 3.08
116 117 6.785963 TCCATTCCTACGATTTTCCTACCTAT 59.214 38.462 0.00 0.00 0.00 2.57
117 118 6.874134 CCATTCCTACGATTTTCCTACCTATG 59.126 42.308 0.00 0.00 0.00 2.23
118 119 7.256190 CCATTCCTACGATTTTCCTACCTATGA 60.256 40.741 0.00 0.00 0.00 2.15
119 120 7.664552 TTCCTACGATTTTCCTACCTATGAA 57.335 36.000 0.00 0.00 0.00 2.57
120 121 7.286215 TCCTACGATTTTCCTACCTATGAAG 57.714 40.000 0.00 0.00 0.00 3.02
121 122 5.927115 CCTACGATTTTCCTACCTATGAAGC 59.073 44.000 0.00 0.00 0.00 3.86
122 123 5.353394 ACGATTTTCCTACCTATGAAGCA 57.647 39.130 0.00 0.00 0.00 3.91
123 124 5.741011 ACGATTTTCCTACCTATGAAGCAA 58.259 37.500 0.00 0.00 0.00 3.91
124 125 6.177610 ACGATTTTCCTACCTATGAAGCAAA 58.822 36.000 0.00 0.00 0.00 3.68
125 126 6.316390 ACGATTTTCCTACCTATGAAGCAAAG 59.684 38.462 0.00 0.00 0.00 2.77
126 127 6.238484 CGATTTTCCTACCTATGAAGCAAAGG 60.238 42.308 0.00 0.00 36.42 3.11
127 128 5.772393 TTTCCTACCTATGAAGCAAAGGA 57.228 39.130 0.00 0.00 34.34 3.36
128 129 5.359194 TTCCTACCTATGAAGCAAAGGAG 57.641 43.478 0.00 0.00 34.34 3.69
129 130 3.711704 TCCTACCTATGAAGCAAAGGAGG 59.288 47.826 0.00 0.00 34.34 4.30
130 131 2.426842 ACCTATGAAGCAAAGGAGGC 57.573 50.000 0.00 0.00 34.34 4.70
131 132 1.064389 ACCTATGAAGCAAAGGAGGCC 60.064 52.381 0.00 0.00 34.34 5.19
132 133 1.213926 CCTATGAAGCAAAGGAGGCCT 59.786 52.381 3.86 3.86 33.87 5.19
134 135 3.117888 CCTATGAAGCAAAGGAGGCCTTA 60.118 47.826 6.77 0.00 43.92 2.69
135 136 2.496899 TGAAGCAAAGGAGGCCTTAG 57.503 50.000 6.77 0.00 43.92 2.18
136 137 1.705186 TGAAGCAAAGGAGGCCTTAGT 59.295 47.619 6.77 0.00 43.92 2.24
137 138 2.910319 TGAAGCAAAGGAGGCCTTAGTA 59.090 45.455 6.77 0.00 43.92 1.82
138 139 3.523564 TGAAGCAAAGGAGGCCTTAGTAT 59.476 43.478 6.77 0.00 43.92 2.12
139 140 3.567478 AGCAAAGGAGGCCTTAGTATG 57.433 47.619 6.77 4.33 43.92 2.39
140 141 2.173569 AGCAAAGGAGGCCTTAGTATGG 59.826 50.000 6.77 0.00 43.92 2.74
141 142 2.172717 GCAAAGGAGGCCTTAGTATGGA 59.827 50.000 6.77 0.00 43.92 3.41
142 143 3.181439 GCAAAGGAGGCCTTAGTATGGAT 60.181 47.826 6.77 0.00 43.92 3.41
143 144 4.041691 GCAAAGGAGGCCTTAGTATGGATA 59.958 45.833 6.77 0.00 43.92 2.59
144 145 5.456186 GCAAAGGAGGCCTTAGTATGGATAA 60.456 44.000 6.77 0.00 43.92 1.75
145 146 6.748332 GCAAAGGAGGCCTTAGTATGGATAAT 60.748 42.308 6.77 0.00 43.92 1.28
146 147 7.528881 GCAAAGGAGGCCTTAGTATGGATAATA 60.529 40.741 6.77 0.00 43.92 0.98
147 148 8.383175 CAAAGGAGGCCTTAGTATGGATAATAA 58.617 37.037 6.77 0.00 43.92 1.40
148 149 7.497773 AGGAGGCCTTAGTATGGATAATAAC 57.502 40.000 6.77 0.00 0.00 1.89
149 150 7.023120 AGGAGGCCTTAGTATGGATAATAACA 58.977 38.462 6.77 0.00 0.00 2.41
150 151 7.684619 AGGAGGCCTTAGTATGGATAATAACAT 59.315 37.037 6.77 0.00 0.00 2.71
151 152 7.770897 GGAGGCCTTAGTATGGATAATAACATG 59.229 40.741 6.77 0.00 0.00 3.21
152 153 7.112779 AGGCCTTAGTATGGATAATAACATGC 58.887 38.462 0.00 0.00 0.00 4.06
153 154 6.884295 GGCCTTAGTATGGATAATAACATGCA 59.116 38.462 6.27 0.00 32.98 3.96
154 155 7.393234 GGCCTTAGTATGGATAATAACATGCAA 59.607 37.037 6.27 0.00 32.98 4.08
155 156 8.960591 GCCTTAGTATGGATAATAACATGCAAT 58.039 33.333 6.27 0.00 32.98 3.56
194 195 9.442047 GAGATATACTCATTTTATCTTGGGGTG 57.558 37.037 0.00 0.00 44.36 4.61
195 196 8.949421 AGATATACTCATTTTATCTTGGGGTGT 58.051 33.333 0.00 0.00 30.37 4.16
196 197 8.924511 ATATACTCATTTTATCTTGGGGTGTG 57.075 34.615 0.00 0.00 0.00 3.82
197 198 4.998051 ACTCATTTTATCTTGGGGTGTGT 58.002 39.130 0.00 0.00 0.00 3.72
198 199 5.393866 ACTCATTTTATCTTGGGGTGTGTT 58.606 37.500 0.00 0.00 0.00 3.32
199 200 6.548321 ACTCATTTTATCTTGGGGTGTGTTA 58.452 36.000 0.00 0.00 0.00 2.41
200 201 7.182060 ACTCATTTTATCTTGGGGTGTGTTAT 58.818 34.615 0.00 0.00 0.00 1.89
201 202 7.122650 ACTCATTTTATCTTGGGGTGTGTTATG 59.877 37.037 0.00 0.00 0.00 1.90
202 203 6.951198 TCATTTTATCTTGGGGTGTGTTATGT 59.049 34.615 0.00 0.00 0.00 2.29
203 204 7.453126 TCATTTTATCTTGGGGTGTGTTATGTT 59.547 33.333 0.00 0.00 0.00 2.71
204 205 8.744652 CATTTTATCTTGGGGTGTGTTATGTTA 58.255 33.333 0.00 0.00 0.00 2.41
205 206 7.931578 TTTATCTTGGGGTGTGTTATGTTAG 57.068 36.000 0.00 0.00 0.00 2.34
206 207 5.772393 ATCTTGGGGTGTGTTATGTTAGA 57.228 39.130 0.00 0.00 0.00 2.10
207 208 5.160607 TCTTGGGGTGTGTTATGTTAGAG 57.839 43.478 0.00 0.00 0.00 2.43
208 209 4.595781 TCTTGGGGTGTGTTATGTTAGAGT 59.404 41.667 0.00 0.00 0.00 3.24
209 210 5.781306 TCTTGGGGTGTGTTATGTTAGAGTA 59.219 40.000 0.00 0.00 0.00 2.59
210 211 6.270463 TCTTGGGGTGTGTTATGTTAGAGTAA 59.730 38.462 0.00 0.00 0.00 2.24
211 212 5.797051 TGGGGTGTGTTATGTTAGAGTAAC 58.203 41.667 0.00 0.00 39.11 2.50
241 242 7.719871 ATGTTACCACAAGTATCTGTCTACT 57.280 36.000 0.00 0.00 36.16 2.57
242 243 7.154435 TGTTACCACAAGTATCTGTCTACTC 57.846 40.000 0.00 0.00 30.68 2.59
243 244 6.717997 TGTTACCACAAGTATCTGTCTACTCA 59.282 38.462 0.00 0.00 30.68 3.41
244 245 7.396339 TGTTACCACAAGTATCTGTCTACTCAT 59.604 37.037 0.00 0.00 30.68 2.90
245 246 6.859112 ACCACAAGTATCTGTCTACTCATT 57.141 37.500 0.00 0.00 30.68 2.57
246 247 7.956328 ACCACAAGTATCTGTCTACTCATTA 57.044 36.000 0.00 0.00 30.68 1.90
247 248 8.362464 ACCACAAGTATCTGTCTACTCATTAA 57.638 34.615 0.00 0.00 30.68 1.40
248 249 8.251721 ACCACAAGTATCTGTCTACTCATTAAC 58.748 37.037 0.00 0.00 30.68 2.01
249 250 8.470805 CCACAAGTATCTGTCTACTCATTAACT 58.529 37.037 0.00 0.00 30.68 2.24
250 251 9.509855 CACAAGTATCTGTCTACTCATTAACTC 57.490 37.037 0.00 0.00 30.68 3.01
251 252 8.688151 ACAAGTATCTGTCTACTCATTAACTCC 58.312 37.037 0.00 0.00 30.68 3.85
252 253 8.687242 CAAGTATCTGTCTACTCATTAACTCCA 58.313 37.037 0.00 0.00 30.68 3.86
253 254 9.427821 AAGTATCTGTCTACTCATTAACTCCAT 57.572 33.333 0.00 0.00 30.68 3.41
256 257 7.584122 TCTGTCTACTCATTAACTCCATACC 57.416 40.000 0.00 0.00 0.00 2.73
257 258 7.123383 TCTGTCTACTCATTAACTCCATACCA 58.877 38.462 0.00 0.00 0.00 3.25
258 259 7.785028 TCTGTCTACTCATTAACTCCATACCAT 59.215 37.037 0.00 0.00 0.00 3.55
259 260 9.078990 CTGTCTACTCATTAACTCCATACCATA 57.921 37.037 0.00 0.00 0.00 2.74
260 261 9.601810 TGTCTACTCATTAACTCCATACCATAT 57.398 33.333 0.00 0.00 0.00 1.78
344 345 7.888546 AGCCCAAGTCAAAGTAGTACAATTATT 59.111 33.333 2.52 0.00 0.00 1.40
371 372 1.075374 AGGGCAAAATGAGTGTAGGCA 59.925 47.619 0.00 0.00 0.00 4.75
376 377 3.766151 CAAAATGAGTGTAGGCATGCAG 58.234 45.455 21.36 0.00 0.00 4.41
477 516 2.260743 CTCAGCTCAGTGCAGCGA 59.739 61.111 8.35 8.12 44.82 4.93
483 522 2.679996 TCAGTGCAGCGAGCCCTA 60.680 61.111 0.00 0.00 44.83 3.53
526 576 1.813513 ACTTGAGCAGCACATGTACC 58.186 50.000 9.25 0.00 0.00 3.34
527 577 1.089920 CTTGAGCAGCACATGTACCC 58.910 55.000 0.00 0.00 0.00 3.69
564 614 4.910304 AGGAAACTGACATATAGATGCCCT 59.090 41.667 0.00 0.00 41.13 5.19
571 622 5.858381 TGACATATAGATGCCCTCTTGTTC 58.142 41.667 0.00 0.00 36.43 3.18
574 625 2.270434 TAGATGCCCTCTTGTTCCCT 57.730 50.000 0.00 0.00 35.28 4.20
588 639 3.775654 CCCTGTCTCCGTCCTGGC 61.776 72.222 0.00 0.00 37.80 4.85
648 1874 3.074412 CAACTTAGCAACCTACCAGTGG 58.926 50.000 7.91 7.91 0.00 4.00
682 1909 0.400213 TTCACTGACATGTGGGTCCC 59.600 55.000 1.15 0.00 38.40 4.46
714 1974 0.035458 CCAGAGGTTCAGTGGGTCAC 59.965 60.000 0.00 0.00 34.10 3.67
715 1975 1.051812 CAGAGGTTCAGTGGGTCACT 58.948 55.000 0.00 0.00 46.51 3.41
776 2036 2.265589 TACGTGGGAGCGAGATGATA 57.734 50.000 0.00 0.00 35.59 2.15
801 2061 3.670203 CGTGACAACAACAGTTTCACTC 58.330 45.455 12.10 0.00 34.64 3.51
816 2076 3.036084 CTCGGACGTGTGGTGCAC 61.036 66.667 8.80 8.80 44.36 4.57
817 2077 3.499929 CTCGGACGTGTGGTGCACT 62.500 63.158 17.98 0.00 45.57 4.40
818 2078 3.337889 CGGACGTGTGGTGCACTG 61.338 66.667 17.98 4.53 45.57 3.66
819 2079 2.972505 GGACGTGTGGTGCACTGG 60.973 66.667 17.98 4.33 45.57 4.00
820 2080 2.203015 GACGTGTGGTGCACTGGT 60.203 61.111 17.98 7.59 45.57 4.00
821 2081 2.513666 ACGTGTGGTGCACTGGTG 60.514 61.111 17.98 5.98 45.57 4.17
1091 4270 3.181486 GCAGTAGTCGAGACCATCATTGA 60.181 47.826 0.00 0.00 0.00 2.57
1200 4390 3.285215 GCAGGCGGCCTCATCATG 61.285 66.667 20.97 9.08 36.11 3.07
1587 4789 1.517257 CGACGCCTCGATGCTTCTT 60.517 57.895 15.24 0.00 43.06 2.52
1647 4868 4.511454 TCTCTCTTGTGTTTTGTTCATCGG 59.489 41.667 0.00 0.00 0.00 4.18
1651 4872 5.120399 TCTTGTGTTTTGTTCATCGGTACT 58.880 37.500 0.00 0.00 0.00 2.73
1671 4898 4.870363 ACTTGCATGCACGAATTTACTTT 58.130 34.783 28.78 1.85 0.00 2.66
1712 4941 2.039084 GTGGATCAAGAGGTTCAGGTGT 59.961 50.000 0.00 0.00 0.00 4.16
1713 4942 2.303022 TGGATCAAGAGGTTCAGGTGTC 59.697 50.000 0.00 0.00 0.00 3.67
1735 4964 8.483218 GTGTCATATTTGTCGATCTGTGATTAG 58.517 37.037 0.00 0.00 0.00 1.73
1770 5003 2.866156 GTGATCAAAGATTCGGCGATGA 59.134 45.455 11.76 11.88 0.00 2.92
1812 5046 3.064408 CGTACATCGGTCTGTAGCTTGTA 59.936 47.826 0.00 0.00 32.45 2.41
1813 5047 3.505464 ACATCGGTCTGTAGCTTGTAC 57.495 47.619 0.00 0.00 0.00 2.90
1952 5192 3.316029 CAGTCACAGAAGATGGCAAAACA 59.684 43.478 0.00 0.00 0.00 2.83
1958 5198 5.176223 CACAGAAGATGGCAAAACATGTTTC 59.824 40.000 23.47 12.27 34.86 2.78
2084 5333 2.095567 CAGCCAACAATCAAGGACGAAG 60.096 50.000 0.00 0.00 0.00 3.79
2104 5353 0.107897 ACGCACGAATTATGGCCTGA 60.108 50.000 3.32 0.00 0.00 3.86
2125 5374 7.042051 GCCTGACGCTATATTTTGATGTAAAGA 60.042 37.037 0.00 0.00 0.00 2.52
2129 5378 6.765989 ACGCTATATTTTGATGTAAAGAGGCA 59.234 34.615 0.00 0.00 0.00 4.75
2193 5454 2.490991 GGTTGTCGTTTCCAAGTAGCT 58.509 47.619 0.00 0.00 0.00 3.32
2194 5455 3.555586 GGGTTGTCGTTTCCAAGTAGCTA 60.556 47.826 0.00 0.00 0.00 3.32
2195 5456 3.678548 GGTTGTCGTTTCCAAGTAGCTAG 59.321 47.826 0.00 0.00 0.00 3.42
2196 5457 4.553323 GTTGTCGTTTCCAAGTAGCTAGA 58.447 43.478 0.00 0.00 0.00 2.43
2197 5458 4.170292 TGTCGTTTCCAAGTAGCTAGAC 57.830 45.455 0.00 0.00 0.00 2.59
2200 5461 5.474532 TGTCGTTTCCAAGTAGCTAGACTAA 59.525 40.000 0.00 0.00 30.90 2.24
2204 5465 2.686915 TCCAAGTAGCTAGACTAACCGC 59.313 50.000 0.00 0.00 30.90 5.68
2215 5476 3.456280 AGACTAACCGCGTAAAACACAA 58.544 40.909 4.92 0.00 0.00 3.33
2223 5484 1.601430 GCGTAAAACACAACCCGGTAA 59.399 47.619 0.00 0.00 0.00 2.85
2226 5487 4.281264 CGTAAAACACAACCCGGTAAAAG 58.719 43.478 0.00 0.00 0.00 2.27
2233 5495 2.359848 ACAACCCGGTAAAAGCAAAGTC 59.640 45.455 0.00 0.00 0.00 3.01
2249 5511 0.389391 AGTCGGGTAGGCATCGAATG 59.611 55.000 0.00 0.00 34.62 2.67
2251 5513 0.757561 TCGGGTAGGCATCGAATGGA 60.758 55.000 0.00 0.00 0.00 3.41
2252 5514 0.319900 CGGGTAGGCATCGAATGGAG 60.320 60.000 0.00 0.00 0.00 3.86
2253 5515 0.603975 GGGTAGGCATCGAATGGAGC 60.604 60.000 0.00 0.00 0.00 4.70
2256 5520 1.869767 GTAGGCATCGAATGGAGCTTG 59.130 52.381 0.00 0.00 0.00 4.01
2265 5529 0.811616 AATGGAGCTTGGATCGTCGC 60.812 55.000 0.00 0.00 0.00 5.19
2271 5536 1.982073 GCTTGGATCGTCGCTTTGGG 61.982 60.000 0.00 0.00 0.00 4.12
2279 5544 0.589223 CGTCGCTTTGGGCTGTAAAA 59.411 50.000 0.00 0.00 39.13 1.52
2280 5545 1.662026 CGTCGCTTTGGGCTGTAAAAC 60.662 52.381 0.00 0.00 39.13 2.43
2285 5550 3.003897 CGCTTTGGGCTGTAAAACTTACA 59.996 43.478 0.00 0.00 39.13 2.41
2287 5552 4.037565 GCTTTGGGCTGTAAAACTTACACT 59.962 41.667 0.00 0.00 38.06 3.55
2290 5555 4.980573 TGGGCTGTAAAACTTACACTGAT 58.019 39.130 0.00 0.00 0.00 2.90
2295 5560 6.861572 GGCTGTAAAACTTACACTGATTTTCC 59.138 38.462 0.00 0.00 0.00 3.13
2302 5567 6.743575 ACTTACACTGATTTTCCATACTGC 57.256 37.500 0.00 0.00 0.00 4.40
2303 5568 6.476378 ACTTACACTGATTTTCCATACTGCT 58.524 36.000 0.00 0.00 0.00 4.24
2304 5569 6.942576 ACTTACACTGATTTTCCATACTGCTT 59.057 34.615 0.00 0.00 0.00 3.91
2305 5570 7.448469 ACTTACACTGATTTTCCATACTGCTTT 59.552 33.333 0.00 0.00 0.00 3.51
2306 5571 6.017400 ACACTGATTTTCCATACTGCTTTG 57.983 37.500 0.00 0.00 0.00 2.77
2307 5572 4.860907 CACTGATTTTCCATACTGCTTTGC 59.139 41.667 0.00 0.00 0.00 3.68
2308 5573 4.095410 TGATTTTCCATACTGCTTTGCG 57.905 40.909 0.00 0.00 0.00 4.85
2309 5574 3.119531 TGATTTTCCATACTGCTTTGCGG 60.120 43.478 0.00 0.00 41.29 5.69
2310 5575 1.173043 TTTCCATACTGCTTTGCGGG 58.827 50.000 3.35 0.00 39.57 6.13
2311 5576 0.037590 TTCCATACTGCTTTGCGGGT 59.962 50.000 3.35 0.00 39.57 5.28
2312 5577 0.392461 TCCATACTGCTTTGCGGGTC 60.392 55.000 3.35 0.00 39.57 4.46
2313 5578 1.376609 CCATACTGCTTTGCGGGTCC 61.377 60.000 3.35 0.00 39.57 4.46
2314 5579 0.392998 CATACTGCTTTGCGGGTCCT 60.393 55.000 3.35 0.00 39.57 3.85
2315 5580 0.328258 ATACTGCTTTGCGGGTCCTT 59.672 50.000 3.35 0.00 39.57 3.36
2316 5581 0.978151 TACTGCTTTGCGGGTCCTTA 59.022 50.000 3.35 0.00 39.57 2.69
2317 5582 0.605589 ACTGCTTTGCGGGTCCTTAC 60.606 55.000 3.35 0.00 39.57 2.34
2318 5583 0.605319 CTGCTTTGCGGGTCCTTACA 60.605 55.000 0.00 0.00 0.00 2.41
2319 5584 0.887387 TGCTTTGCGGGTCCTTACAC 60.887 55.000 0.00 0.00 0.00 2.90
2320 5585 0.605589 GCTTTGCGGGTCCTTACACT 60.606 55.000 0.00 0.00 0.00 3.55
2321 5586 1.892209 CTTTGCGGGTCCTTACACTT 58.108 50.000 0.00 0.00 0.00 3.16
2322 5587 1.535462 CTTTGCGGGTCCTTACACTTG 59.465 52.381 0.00 0.00 0.00 3.16
2323 5588 0.470766 TTGCGGGTCCTTACACTTGT 59.529 50.000 0.00 0.00 0.00 3.16
2324 5589 1.340088 TGCGGGTCCTTACACTTGTA 58.660 50.000 0.00 0.00 0.00 2.41
2325 5590 1.274167 TGCGGGTCCTTACACTTGTAG 59.726 52.381 0.00 0.00 0.00 2.74
2326 5591 1.547372 GCGGGTCCTTACACTTGTAGA 59.453 52.381 0.00 0.00 0.00 2.59
2327 5592 2.028748 GCGGGTCCTTACACTTGTAGAA 60.029 50.000 0.00 0.00 0.00 2.10
2328 5593 3.555586 GCGGGTCCTTACACTTGTAGAAA 60.556 47.826 0.00 0.00 0.00 2.52
2329 5594 4.634199 CGGGTCCTTACACTTGTAGAAAA 58.366 43.478 0.00 0.00 0.00 2.29
2330 5595 4.450080 CGGGTCCTTACACTTGTAGAAAAC 59.550 45.833 0.00 0.00 0.00 2.43
2331 5596 4.450080 GGGTCCTTACACTTGTAGAAAACG 59.550 45.833 0.00 0.00 0.00 3.60
2332 5597 4.450080 GGTCCTTACACTTGTAGAAAACGG 59.550 45.833 0.00 0.00 0.00 4.44
2333 5598 4.060205 TCCTTACACTTGTAGAAAACGGC 58.940 43.478 0.00 0.00 0.00 5.68
2334 5599 3.187842 CCTTACACTTGTAGAAAACGGCC 59.812 47.826 0.00 0.00 0.00 6.13
2335 5600 1.601166 ACACTTGTAGAAAACGGCCC 58.399 50.000 0.00 0.00 0.00 5.80
2336 5601 1.134037 ACACTTGTAGAAAACGGCCCA 60.134 47.619 0.00 0.00 0.00 5.36
2337 5602 2.159382 CACTTGTAGAAAACGGCCCAT 58.841 47.619 0.00 0.00 0.00 4.00
2338 5603 2.556622 CACTTGTAGAAAACGGCCCATT 59.443 45.455 0.00 0.00 0.00 3.16
2339 5604 3.005367 CACTTGTAGAAAACGGCCCATTT 59.995 43.478 0.00 0.00 0.00 2.32
2340 5605 3.005367 ACTTGTAGAAAACGGCCCATTTG 59.995 43.478 5.20 0.00 0.00 2.32
2341 5606 2.588620 TGTAGAAAACGGCCCATTTGT 58.411 42.857 5.20 4.28 0.00 2.83
2342 5607 2.959707 TGTAGAAAACGGCCCATTTGTT 59.040 40.909 5.20 0.00 0.00 2.83
2343 5608 2.812358 AGAAAACGGCCCATTTGTTC 57.188 45.000 5.20 0.00 0.00 3.18
2344 5609 1.343142 AGAAAACGGCCCATTTGTTCC 59.657 47.619 5.20 0.00 0.00 3.62
2345 5610 0.032815 AAAACGGCCCATTTGTTCCG 59.967 50.000 0.00 0.00 46.61 4.30
2346 5611 1.811645 AAACGGCCCATTTGTTCCGG 61.812 55.000 0.00 0.00 45.58 5.14
2347 5612 2.360600 CGGCCCATTTGTTCCGGA 60.361 61.111 0.00 0.00 38.35 5.14
2348 5613 1.752694 CGGCCCATTTGTTCCGGAT 60.753 57.895 4.15 0.00 38.35 4.18
2349 5614 1.724582 CGGCCCATTTGTTCCGGATC 61.725 60.000 4.15 4.96 38.35 3.36
2350 5615 0.395724 GGCCCATTTGTTCCGGATCT 60.396 55.000 4.15 0.00 0.00 2.75
2351 5616 1.133915 GGCCCATTTGTTCCGGATCTA 60.134 52.381 4.15 0.00 0.00 1.98
2352 5617 2.222027 GCCCATTTGTTCCGGATCTAG 58.778 52.381 4.15 0.00 0.00 2.43
2353 5618 2.158813 GCCCATTTGTTCCGGATCTAGA 60.159 50.000 4.15 0.00 0.00 2.43
2354 5619 3.733337 CCCATTTGTTCCGGATCTAGAG 58.267 50.000 4.15 0.00 0.00 2.43
2355 5620 3.495100 CCCATTTGTTCCGGATCTAGAGG 60.495 52.174 4.15 7.32 0.00 3.69
2356 5621 2.981859 TTTGTTCCGGATCTAGAGGC 57.018 50.000 4.15 0.00 0.00 4.70
2357 5622 1.120530 TTGTTCCGGATCTAGAGGCC 58.879 55.000 4.15 0.00 0.00 5.19
2358 5623 0.759436 TGTTCCGGATCTAGAGGCCC 60.759 60.000 4.15 0.00 0.00 5.80
2359 5624 0.470268 GTTCCGGATCTAGAGGCCCT 60.470 60.000 4.15 0.00 0.00 5.19
2360 5625 0.264955 TTCCGGATCTAGAGGCCCTT 59.735 55.000 4.15 0.00 0.00 3.95
2361 5626 0.264955 TCCGGATCTAGAGGCCCTTT 59.735 55.000 0.00 0.00 0.00 3.11
2362 5627 1.502039 TCCGGATCTAGAGGCCCTTTA 59.498 52.381 0.00 0.00 0.00 1.85
2363 5628 1.896465 CCGGATCTAGAGGCCCTTTAG 59.104 57.143 0.00 1.83 0.00 1.85
2364 5629 1.273886 CGGATCTAGAGGCCCTTTAGC 59.726 57.143 0.00 0.00 0.00 3.09
2372 5637 4.338815 GCCCTTTAGCCCCTGTTC 57.661 61.111 0.00 0.00 0.00 3.18
2373 5638 1.691823 GCCCTTTAGCCCCTGTTCT 59.308 57.895 0.00 0.00 0.00 3.01
2374 5639 0.916809 GCCCTTTAGCCCCTGTTCTA 59.083 55.000 0.00 0.00 0.00 2.10
2375 5640 1.134068 GCCCTTTAGCCCCTGTTCTAG 60.134 57.143 0.00 0.00 0.00 2.43
2376 5641 2.478292 CCCTTTAGCCCCTGTTCTAGA 58.522 52.381 0.00 0.00 0.00 2.43
2377 5642 2.844348 CCCTTTAGCCCCTGTTCTAGAA 59.156 50.000 0.00 0.00 0.00 2.10
2378 5643 3.370633 CCCTTTAGCCCCTGTTCTAGAAC 60.371 52.174 25.73 25.73 41.50 3.01
2379 5644 3.370633 CCTTTAGCCCCTGTTCTAGAACC 60.371 52.174 28.43 15.09 40.46 3.62
2380 5645 1.481871 TAGCCCCTGTTCTAGAACCG 58.518 55.000 28.43 22.90 40.46 4.44
2381 5646 1.221021 GCCCCTGTTCTAGAACCGG 59.779 63.158 29.59 29.59 42.88 5.28
2385 5650 1.558233 CCTGTTCTAGAACCGGGACT 58.442 55.000 29.13 7.19 40.58 3.85
2386 5651 2.731572 CCTGTTCTAGAACCGGGACTA 58.268 52.381 29.13 12.26 40.58 2.59
2387 5652 3.094572 CCTGTTCTAGAACCGGGACTAA 58.905 50.000 29.13 11.64 40.58 2.24
2388 5653 3.512724 CCTGTTCTAGAACCGGGACTAAA 59.487 47.826 29.13 11.04 40.58 1.85
2389 5654 4.381718 CCTGTTCTAGAACCGGGACTAAAG 60.382 50.000 29.13 18.01 40.58 1.85
2390 5655 3.512724 TGTTCTAGAACCGGGACTAAAGG 59.487 47.826 28.43 0.00 40.46 3.11
2391 5656 2.743553 TCTAGAACCGGGACTAAAGGG 58.256 52.381 6.32 0.00 0.00 3.95
2392 5657 1.138464 CTAGAACCGGGACTAAAGGGC 59.862 57.143 6.32 0.00 0.00 5.19
2393 5658 1.077930 GAACCGGGACTAAAGGGCC 60.078 63.158 6.32 0.00 44.23 5.80
2394 5659 2.864378 GAACCGGGACTAAAGGGCCG 62.864 65.000 6.32 0.00 46.52 6.13
2395 5660 4.171103 CCGGGACTAAAGGGCCGG 62.171 72.222 0.00 0.00 46.52 6.13
2396 5661 3.396570 CGGGACTAAAGGGCCGGT 61.397 66.667 1.90 0.00 46.52 5.28
2397 5662 2.963101 CGGGACTAAAGGGCCGGTT 61.963 63.158 1.90 0.00 46.52 4.44
2398 5663 1.077930 GGGACTAAAGGGCCGGTTC 60.078 63.158 1.90 0.00 46.52 3.62
2399 5664 1.681076 GGACTAAAGGGCCGGTTCA 59.319 57.895 1.90 0.00 30.75 3.18
2400 5665 0.675837 GGACTAAAGGGCCGGTTCAC 60.676 60.000 1.90 0.00 30.75 3.18
2401 5666 0.035739 GACTAAAGGGCCGGTTCACA 59.964 55.000 1.90 0.00 0.00 3.58
2402 5667 0.696501 ACTAAAGGGCCGGTTCACAT 59.303 50.000 1.90 0.00 0.00 3.21
2403 5668 1.094785 CTAAAGGGCCGGTTCACATG 58.905 55.000 1.90 0.00 0.00 3.21
2404 5669 0.963355 TAAAGGGCCGGTTCACATGC 60.963 55.000 1.90 0.00 0.00 4.06
2407 5672 3.053291 GGCCGGTTCACATGCGAA 61.053 61.111 1.90 0.00 0.00 4.70
2408 5673 2.175811 GCCGGTTCACATGCGAAC 59.824 61.111 16.59 16.59 43.75 3.95
2409 5674 2.325082 GCCGGTTCACATGCGAACT 61.325 57.895 22.27 0.00 43.92 3.01
2411 5676 1.154413 CGGTTCACATGCGAACTGC 60.154 57.895 22.27 9.05 43.36 4.40
2412 5677 1.568612 CGGTTCACATGCGAACTGCT 61.569 55.000 22.27 0.00 43.36 4.24
2413 5678 0.110056 GGTTCACATGCGAACTGCTG 60.110 55.000 22.27 0.00 46.63 4.41
2414 5679 0.110056 GTTCACATGCGAACTGCTGG 60.110 55.000 17.40 0.00 46.63 4.85
2415 5680 1.236616 TTCACATGCGAACTGCTGGG 61.237 55.000 0.00 0.00 46.63 4.45
2416 5681 2.360350 ACATGCGAACTGCTGGGG 60.360 61.111 0.00 0.00 46.63 4.96
2417 5682 2.046023 CATGCGAACTGCTGGGGA 60.046 61.111 0.00 0.00 46.63 4.81
2418 5683 1.452651 CATGCGAACTGCTGGGGAT 60.453 57.895 0.00 0.00 46.63 3.85
2419 5684 0.179048 CATGCGAACTGCTGGGGATA 60.179 55.000 0.00 0.00 46.63 2.59
2420 5685 0.767375 ATGCGAACTGCTGGGGATAT 59.233 50.000 0.00 0.00 46.63 1.63
2421 5686 1.419381 TGCGAACTGCTGGGGATATA 58.581 50.000 0.00 0.00 46.63 0.86
2422 5687 1.765904 TGCGAACTGCTGGGGATATAA 59.234 47.619 0.00 0.00 46.63 0.98
2423 5688 2.143925 GCGAACTGCTGGGGATATAAC 58.856 52.381 0.00 0.00 41.73 1.89
2424 5689 2.224305 GCGAACTGCTGGGGATATAACT 60.224 50.000 0.00 0.00 41.73 2.24
2425 5690 3.006537 GCGAACTGCTGGGGATATAACTA 59.993 47.826 0.00 0.00 41.73 2.24
2426 5691 4.322801 GCGAACTGCTGGGGATATAACTAT 60.323 45.833 0.00 0.00 41.73 2.12
2427 5692 5.794894 CGAACTGCTGGGGATATAACTATT 58.205 41.667 0.00 0.00 0.00 1.73
2428 5693 5.639506 CGAACTGCTGGGGATATAACTATTG 59.360 44.000 0.00 0.00 0.00 1.90
2429 5694 5.505181 ACTGCTGGGGATATAACTATTGG 57.495 43.478 0.00 0.00 0.00 3.16
2430 5695 4.913968 ACTGCTGGGGATATAACTATTGGT 59.086 41.667 0.00 0.00 0.00 3.67
2431 5696 6.088819 ACTGCTGGGGATATAACTATTGGTA 58.911 40.000 0.00 0.00 0.00 3.25
2432 5697 6.735704 ACTGCTGGGGATATAACTATTGGTAT 59.264 38.462 0.00 0.00 0.00 2.73
2433 5698 6.957631 TGCTGGGGATATAACTATTGGTATG 58.042 40.000 0.00 0.00 0.00 2.39
2434 5699 6.733334 TGCTGGGGATATAACTATTGGTATGA 59.267 38.462 0.00 0.00 0.00 2.15
2435 5700 7.048512 GCTGGGGATATAACTATTGGTATGAC 58.951 42.308 0.00 0.00 0.00 3.06
2436 5701 7.504926 TGGGGATATAACTATTGGTATGACC 57.495 40.000 0.00 0.00 39.22 4.02
2437 5702 6.445786 TGGGGATATAACTATTGGTATGACCC 59.554 42.308 14.94 14.94 37.50 4.46
2438 5703 6.407752 GGGGATATAACTATTGGTATGACCCG 60.408 46.154 15.96 0.00 37.50 5.28
2439 5704 6.047231 GGATATAACTATTGGTATGACCCGC 58.953 44.000 0.00 0.00 37.50 6.13
2440 5705 6.127140 GGATATAACTATTGGTATGACCCGCT 60.127 42.308 0.00 0.00 37.50 5.52
2441 5706 3.470645 AACTATTGGTATGACCCGCTC 57.529 47.619 0.00 0.00 37.50 5.03
2442 5707 1.340248 ACTATTGGTATGACCCGCTCG 59.660 52.381 0.00 0.00 37.50 5.03
2443 5708 0.677288 TATTGGTATGACCCGCTCGG 59.323 55.000 0.48 0.48 37.50 4.63
2459 5724 4.791069 GGGAGGGGCCTGGTCGTA 62.791 72.222 0.84 0.00 36.66 3.43
2460 5725 3.468140 GGAGGGGCCTGGTCGTAC 61.468 72.222 0.84 0.00 0.00 3.67
2461 5726 2.363925 GAGGGGCCTGGTCGTACT 60.364 66.667 0.84 0.00 0.00 2.73
2462 5727 1.988406 GAGGGGCCTGGTCGTACTT 60.988 63.158 0.84 0.00 0.00 2.24
2463 5728 2.240162 GAGGGGCCTGGTCGTACTTG 62.240 65.000 0.84 0.00 0.00 3.16
2464 5729 2.436115 GGGCCTGGTCGTACTTGC 60.436 66.667 0.84 0.00 0.00 4.01
2465 5730 2.345991 GGCCTGGTCGTACTTGCA 59.654 61.111 0.00 0.00 0.00 4.08
2466 5731 1.302192 GGCCTGGTCGTACTTGCAA 60.302 57.895 0.00 0.00 0.00 4.08
2467 5732 1.298859 GGCCTGGTCGTACTTGCAAG 61.299 60.000 24.84 24.84 0.00 4.01
2468 5733 0.602905 GCCTGGTCGTACTTGCAAGT 60.603 55.000 32.97 32.97 42.91 3.16
2469 5734 1.148310 CCTGGTCGTACTTGCAAGTG 58.852 55.000 36.50 23.38 40.07 3.16
2470 5735 1.540363 CCTGGTCGTACTTGCAAGTGT 60.540 52.381 36.50 18.27 40.07 3.55
2471 5736 2.210116 CTGGTCGTACTTGCAAGTGTT 58.790 47.619 36.50 16.81 40.07 3.32
2472 5737 2.206750 TGGTCGTACTTGCAAGTGTTC 58.793 47.619 36.50 24.98 40.07 3.18
2473 5738 2.159014 TGGTCGTACTTGCAAGTGTTCT 60.159 45.455 36.50 16.09 40.07 3.01
2474 5739 2.870411 GGTCGTACTTGCAAGTGTTCTT 59.130 45.455 36.50 15.38 40.07 2.52
2491 5756 1.460255 TTGAAGCCCAAGACCCAGG 59.540 57.895 0.00 0.00 0.00 4.45
2495 5760 4.066139 GCCCAAGACCCAGGCCAT 62.066 66.667 5.01 0.00 41.00 4.40
2496 5761 2.043652 CCCAAGACCCAGGCCATG 60.044 66.667 5.01 0.00 0.00 3.66
2510 5775 3.494850 CCATGGATGGCGGTTTAGT 57.505 52.632 5.56 0.00 41.75 2.24
2511 5776 1.762708 CCATGGATGGCGGTTTAGTT 58.237 50.000 5.56 0.00 41.75 2.24
2512 5777 2.099405 CCATGGATGGCGGTTTAGTTT 58.901 47.619 5.56 0.00 41.75 2.66
2513 5778 3.283751 CCATGGATGGCGGTTTAGTTTA 58.716 45.455 5.56 0.00 41.75 2.01
2514 5779 3.697045 CCATGGATGGCGGTTTAGTTTAA 59.303 43.478 5.56 0.00 41.75 1.52
2515 5780 4.202010 CCATGGATGGCGGTTTAGTTTAAG 60.202 45.833 5.56 0.00 41.75 1.85
2516 5781 3.349022 TGGATGGCGGTTTAGTTTAAGG 58.651 45.455 0.00 0.00 0.00 2.69
2517 5782 2.098607 GGATGGCGGTTTAGTTTAAGGC 59.901 50.000 0.00 0.00 0.00 4.35
2518 5783 1.536940 TGGCGGTTTAGTTTAAGGCC 58.463 50.000 0.00 0.00 39.48 5.19
2519 5784 0.813184 GGCGGTTTAGTTTAAGGCCC 59.187 55.000 0.00 0.00 33.06 5.80
2520 5785 1.536940 GCGGTTTAGTTTAAGGCCCA 58.463 50.000 0.00 0.00 0.00 5.36
2521 5786 2.097036 GCGGTTTAGTTTAAGGCCCAT 58.903 47.619 0.00 0.00 0.00 4.00
2522 5787 2.159296 GCGGTTTAGTTTAAGGCCCATG 60.159 50.000 0.00 0.00 0.00 3.66
2523 5788 2.425668 CGGTTTAGTTTAAGGCCCATGG 59.574 50.000 4.14 4.14 0.00 3.66
2533 5798 4.864334 GCCCATGGCCCAGAGACG 62.864 72.222 6.09 0.00 44.06 4.18
2534 5799 3.083349 CCCATGGCCCAGAGACGA 61.083 66.667 6.09 0.00 0.00 4.20
2535 5800 2.187946 CCATGGCCCAGAGACGAC 59.812 66.667 0.00 0.00 0.00 4.34
2536 5801 2.362369 CCATGGCCCAGAGACGACT 61.362 63.158 0.00 0.00 0.00 4.18
2537 5802 1.599047 CATGGCCCAGAGACGACTT 59.401 57.895 0.00 0.00 0.00 3.01
2538 5803 0.824109 CATGGCCCAGAGACGACTTA 59.176 55.000 0.00 0.00 0.00 2.24
2539 5804 1.207089 CATGGCCCAGAGACGACTTAA 59.793 52.381 0.00 0.00 0.00 1.85
2540 5805 0.895530 TGGCCCAGAGACGACTTAAG 59.104 55.000 0.00 0.00 0.00 1.85
2541 5806 0.175989 GGCCCAGAGACGACTTAAGG 59.824 60.000 7.53 0.00 0.00 2.69
2542 5807 0.460459 GCCCAGAGACGACTTAAGGC 60.460 60.000 7.53 1.97 0.00 4.35
2543 5808 0.895530 CCCAGAGACGACTTAAGGCA 59.104 55.000 9.49 0.00 0.00 4.75
2544 5809 1.482593 CCCAGAGACGACTTAAGGCAT 59.517 52.381 9.49 0.00 0.00 4.40
2545 5810 2.544685 CCAGAGACGACTTAAGGCATG 58.455 52.381 9.49 0.00 0.00 4.06
2546 5811 2.093973 CCAGAGACGACTTAAGGCATGT 60.094 50.000 9.49 0.00 0.00 3.21
2547 5812 3.130516 CCAGAGACGACTTAAGGCATGTA 59.869 47.826 9.49 0.00 0.00 2.29
2548 5813 4.355437 CAGAGACGACTTAAGGCATGTAG 58.645 47.826 9.49 0.00 0.00 2.74
2549 5814 4.017808 AGAGACGACTTAAGGCATGTAGT 58.982 43.478 9.49 0.00 0.00 2.73
2550 5815 4.106197 GAGACGACTTAAGGCATGTAGTG 58.894 47.826 9.49 0.00 0.00 2.74
2551 5816 3.510360 AGACGACTTAAGGCATGTAGTGT 59.490 43.478 9.49 0.00 0.00 3.55
2552 5817 4.021368 AGACGACTTAAGGCATGTAGTGTT 60.021 41.667 9.49 0.00 0.00 3.32
2553 5818 5.184479 AGACGACTTAAGGCATGTAGTGTTA 59.816 40.000 9.49 0.00 0.00 2.41
2554 5819 5.786311 ACGACTTAAGGCATGTAGTGTTAA 58.214 37.500 9.49 0.00 0.00 2.01
2555 5820 6.225318 ACGACTTAAGGCATGTAGTGTTAAA 58.775 36.000 9.49 0.00 0.00 1.52
2556 5821 6.707161 ACGACTTAAGGCATGTAGTGTTAAAA 59.293 34.615 9.49 0.00 0.00 1.52
2557 5822 7.013529 CGACTTAAGGCATGTAGTGTTAAAAC 58.986 38.462 9.49 0.00 0.00 2.43
2558 5823 7.210718 ACTTAAGGCATGTAGTGTTAAAACC 57.789 36.000 7.53 0.00 0.00 3.27
2559 5824 4.759516 AAGGCATGTAGTGTTAAAACCG 57.240 40.909 0.00 0.00 0.00 4.44
2560 5825 2.486592 AGGCATGTAGTGTTAAAACCGC 59.513 45.455 0.00 0.00 0.00 5.68
2561 5826 2.414957 GGCATGTAGTGTTAAAACCGCC 60.415 50.000 0.00 0.00 0.00 6.13
2562 5827 2.226912 GCATGTAGTGTTAAAACCGCCA 59.773 45.455 0.00 0.00 0.00 5.69
2563 5828 3.119637 GCATGTAGTGTTAAAACCGCCAT 60.120 43.478 0.00 0.00 0.00 4.40
2564 5829 4.411327 CATGTAGTGTTAAAACCGCCATG 58.589 43.478 5.86 5.86 0.00 3.66
2565 5830 3.478509 TGTAGTGTTAAAACCGCCATGT 58.521 40.909 0.00 0.00 0.00 3.21
2566 5831 4.639334 TGTAGTGTTAAAACCGCCATGTA 58.361 39.130 0.00 0.00 0.00 2.29
2567 5832 5.247084 TGTAGTGTTAAAACCGCCATGTAT 58.753 37.500 0.00 0.00 0.00 2.29
2568 5833 4.695217 AGTGTTAAAACCGCCATGTATG 57.305 40.909 0.00 0.00 0.00 2.39
2584 5849 4.551702 TGTATGGCATGACTTGTACTGT 57.448 40.909 10.98 0.00 0.00 3.55
2585 5850 5.669164 TGTATGGCATGACTTGTACTGTA 57.331 39.130 10.98 0.00 0.00 2.74
2586 5851 6.043854 TGTATGGCATGACTTGTACTGTAA 57.956 37.500 10.98 0.00 0.00 2.41
2587 5852 6.106003 TGTATGGCATGACTTGTACTGTAAG 58.894 40.000 10.98 0.00 42.29 2.34
2588 5853 4.882842 TGGCATGACTTGTACTGTAAGA 57.117 40.909 0.00 0.00 37.43 2.10
2589 5854 4.566004 TGGCATGACTTGTACTGTAAGAC 58.434 43.478 0.00 0.00 37.43 3.01
2590 5855 4.039852 TGGCATGACTTGTACTGTAAGACA 59.960 41.667 0.00 0.00 37.43 3.41
2591 5856 4.994852 GGCATGACTTGTACTGTAAGACAA 59.005 41.667 0.00 0.00 37.43 3.18
2593 5858 5.926542 GCATGACTTGTACTGTAAGACAAGA 59.073 40.000 22.21 7.16 46.00 3.02
2594 5859 6.423905 GCATGACTTGTACTGTAAGACAAGAA 59.576 38.462 22.21 13.29 46.00 2.52
2595 5860 7.042051 GCATGACTTGTACTGTAAGACAAGAAA 60.042 37.037 22.21 13.03 46.00 2.52
2596 5861 8.993121 CATGACTTGTACTGTAAGACAAGAAAT 58.007 33.333 22.21 14.23 46.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.768662 AGATGCCCTTTGATTCACATCATAG 59.231 40.000 13.54 1.71 39.28 2.23
8 9 5.698104 AGATGCCCTTTGATTCACATCATA 58.302 37.500 13.54 0.00 39.28 2.15
9 10 4.543689 AGATGCCCTTTGATTCACATCAT 58.456 39.130 13.54 2.83 39.28 2.45
10 11 3.949754 GAGATGCCCTTTGATTCACATCA 59.050 43.478 13.54 0.00 37.67 3.07
11 12 3.317430 GGAGATGCCCTTTGATTCACATC 59.683 47.826 6.23 6.23 35.31 3.06
12 13 3.294214 GGAGATGCCCTTTGATTCACAT 58.706 45.455 0.00 0.00 0.00 3.21
13 14 2.041485 TGGAGATGCCCTTTGATTCACA 59.959 45.455 0.00 0.00 34.97 3.58
14 15 2.726821 TGGAGATGCCCTTTGATTCAC 58.273 47.619 0.00 0.00 34.97 3.18
15 16 3.675348 ATGGAGATGCCCTTTGATTCA 57.325 42.857 0.00 0.00 34.97 2.57
16 17 4.648307 AGAAATGGAGATGCCCTTTGATTC 59.352 41.667 0.00 0.00 35.02 2.52
17 18 4.617593 AGAAATGGAGATGCCCTTTGATT 58.382 39.130 0.00 0.00 35.02 2.57
18 19 4.261411 AGAAATGGAGATGCCCTTTGAT 57.739 40.909 0.00 0.00 35.02 2.57
19 20 3.744940 AGAAATGGAGATGCCCTTTGA 57.255 42.857 0.00 0.00 35.02 2.69
20 21 6.323225 AGAAATAGAAATGGAGATGCCCTTTG 59.677 38.462 0.00 0.00 35.02 2.77
21 22 6.438620 AGAAATAGAAATGGAGATGCCCTTT 58.561 36.000 0.00 0.00 37.22 3.11
22 23 6.023334 AGAAATAGAAATGGAGATGCCCTT 57.977 37.500 0.00 0.00 34.97 3.95
23 24 5.659849 AGAAATAGAAATGGAGATGCCCT 57.340 39.130 0.00 0.00 34.97 5.19
24 25 6.538263 AGTAGAAATAGAAATGGAGATGCCC 58.462 40.000 0.00 0.00 34.97 5.36
25 26 7.220030 TGAGTAGAAATAGAAATGGAGATGCC 58.780 38.462 0.00 0.00 37.10 4.40
26 27 8.845413 ATGAGTAGAAATAGAAATGGAGATGC 57.155 34.615 0.00 0.00 0.00 3.91
29 30 9.883293 TCCTATGAGTAGAAATAGAAATGGAGA 57.117 33.333 0.00 0.00 0.00 3.71
64 65 9.458727 AAAGTCATAGAAAATGAGATGACATGT 57.541 29.630 14.37 0.00 46.94 3.21
67 68 8.950210 GGAAAAGTCATAGAAAATGAGATGACA 58.050 33.333 14.37 0.00 46.94 3.58
68 69 8.950210 TGGAAAAGTCATAGAAAATGAGATGAC 58.050 33.333 5.86 5.86 45.57 3.06
69 70 9.690913 ATGGAAAAGTCATAGAAAATGAGATGA 57.309 29.630 0.00 0.00 0.00 2.92
72 73 8.960591 GGAATGGAAAAGTCATAGAAAATGAGA 58.039 33.333 0.00 0.00 0.00 3.27
73 74 8.964772 AGGAATGGAAAAGTCATAGAAAATGAG 58.035 33.333 0.00 0.00 0.00 2.90
74 75 8.884124 AGGAATGGAAAAGTCATAGAAAATGA 57.116 30.769 0.00 0.00 0.00 2.57
76 77 8.893727 CGTAGGAATGGAAAAGTCATAGAAAAT 58.106 33.333 0.00 0.00 0.00 1.82
77 78 8.098286 TCGTAGGAATGGAAAAGTCATAGAAAA 58.902 33.333 0.00 0.00 0.00 2.29
78 79 7.617225 TCGTAGGAATGGAAAAGTCATAGAAA 58.383 34.615 0.00 0.00 0.00 2.52
79 80 7.177832 TCGTAGGAATGGAAAAGTCATAGAA 57.822 36.000 0.00 0.00 0.00 2.10
80 81 6.785337 TCGTAGGAATGGAAAAGTCATAGA 57.215 37.500 0.00 0.00 0.00 1.98
81 82 8.438676 AAATCGTAGGAATGGAAAAGTCATAG 57.561 34.615 0.00 0.00 0.00 2.23
82 83 8.801882 AAAATCGTAGGAATGGAAAAGTCATA 57.198 30.769 0.00 0.00 0.00 2.15
83 84 7.148069 GGAAAATCGTAGGAATGGAAAAGTCAT 60.148 37.037 0.00 0.00 0.00 3.06
84 85 6.150474 GGAAAATCGTAGGAATGGAAAAGTCA 59.850 38.462 0.00 0.00 0.00 3.41
85 86 6.374613 AGGAAAATCGTAGGAATGGAAAAGTC 59.625 38.462 0.00 0.00 0.00 3.01
86 87 6.246163 AGGAAAATCGTAGGAATGGAAAAGT 58.754 36.000 0.00 0.00 0.00 2.66
87 88 6.759497 AGGAAAATCGTAGGAATGGAAAAG 57.241 37.500 0.00 0.00 0.00 2.27
88 89 6.600427 GGTAGGAAAATCGTAGGAATGGAAAA 59.400 38.462 0.00 0.00 0.00 2.29
89 90 6.069847 AGGTAGGAAAATCGTAGGAATGGAAA 60.070 38.462 0.00 0.00 0.00 3.13
90 91 5.427481 AGGTAGGAAAATCGTAGGAATGGAA 59.573 40.000 0.00 0.00 0.00 3.53
91 92 4.966805 AGGTAGGAAAATCGTAGGAATGGA 59.033 41.667 0.00 0.00 0.00 3.41
92 93 5.291905 AGGTAGGAAAATCGTAGGAATGG 57.708 43.478 0.00 0.00 0.00 3.16
93 94 7.667557 TCATAGGTAGGAAAATCGTAGGAATG 58.332 38.462 0.00 0.00 0.00 2.67
94 95 7.850935 TCATAGGTAGGAAAATCGTAGGAAT 57.149 36.000 0.00 0.00 0.00 3.01
95 96 7.664552 TTCATAGGTAGGAAAATCGTAGGAA 57.335 36.000 0.00 0.00 0.00 3.36
96 97 6.239232 GCTTCATAGGTAGGAAAATCGTAGGA 60.239 42.308 0.00 0.00 0.00 2.94
97 98 5.927115 GCTTCATAGGTAGGAAAATCGTAGG 59.073 44.000 0.00 0.00 0.00 3.18
98 99 6.513180 TGCTTCATAGGTAGGAAAATCGTAG 58.487 40.000 0.00 0.00 0.00 3.51
99 100 6.474140 TGCTTCATAGGTAGGAAAATCGTA 57.526 37.500 0.00 0.00 0.00 3.43
100 101 5.353394 TGCTTCATAGGTAGGAAAATCGT 57.647 39.130 0.00 0.00 0.00 3.73
101 102 6.238484 CCTTTGCTTCATAGGTAGGAAAATCG 60.238 42.308 2.72 0.00 32.89 3.34
102 103 6.828785 TCCTTTGCTTCATAGGTAGGAAAATC 59.171 38.462 2.72 0.00 32.89 2.17
103 104 6.731467 TCCTTTGCTTCATAGGTAGGAAAAT 58.269 36.000 2.72 0.00 32.89 1.82
104 105 6.134535 TCCTTTGCTTCATAGGTAGGAAAA 57.865 37.500 2.72 0.00 32.89 2.29
105 106 5.339200 CCTCCTTTGCTTCATAGGTAGGAAA 60.339 44.000 1.26 1.26 34.89 3.13
106 107 4.164221 CCTCCTTTGCTTCATAGGTAGGAA 59.836 45.833 12.07 0.00 34.89 3.36
107 108 3.711704 CCTCCTTTGCTTCATAGGTAGGA 59.288 47.826 12.07 0.00 34.89 2.94
108 109 3.745797 GCCTCCTTTGCTTCATAGGTAGG 60.746 52.174 12.63 12.63 34.84 3.18
109 110 3.471680 GCCTCCTTTGCTTCATAGGTAG 58.528 50.000 3.83 1.60 34.84 3.18
110 111 2.172717 GGCCTCCTTTGCTTCATAGGTA 59.827 50.000 0.00 0.00 34.84 3.08
111 112 1.064389 GGCCTCCTTTGCTTCATAGGT 60.064 52.381 0.00 0.00 34.84 3.08
112 113 1.213926 AGGCCTCCTTTGCTTCATAGG 59.786 52.381 0.00 0.00 34.61 2.57
113 114 2.725221 AGGCCTCCTTTGCTTCATAG 57.275 50.000 0.00 0.00 0.00 2.23
114 115 3.523564 ACTAAGGCCTCCTTTGCTTCATA 59.476 43.478 5.23 0.00 41.69 2.15
115 116 2.310052 ACTAAGGCCTCCTTTGCTTCAT 59.690 45.455 5.23 0.00 41.69 2.57
116 117 1.705186 ACTAAGGCCTCCTTTGCTTCA 59.295 47.619 5.23 0.00 41.69 3.02
117 118 2.498644 ACTAAGGCCTCCTTTGCTTC 57.501 50.000 5.23 0.00 41.69 3.86
118 119 3.372025 CCATACTAAGGCCTCCTTTGCTT 60.372 47.826 5.23 0.00 41.69 3.91
119 120 2.173569 CCATACTAAGGCCTCCTTTGCT 59.826 50.000 5.23 0.00 41.69 3.91
120 121 2.172717 TCCATACTAAGGCCTCCTTTGC 59.827 50.000 5.23 0.00 41.69 3.68
121 122 4.713792 ATCCATACTAAGGCCTCCTTTG 57.286 45.455 5.23 4.60 41.69 2.77
122 123 8.383947 GTTATTATCCATACTAAGGCCTCCTTT 58.616 37.037 5.23 0.00 41.69 3.11
123 124 7.516209 TGTTATTATCCATACTAAGGCCTCCTT 59.484 37.037 5.23 3.40 46.63 3.36
124 125 7.023120 TGTTATTATCCATACTAAGGCCTCCT 58.977 38.462 5.23 0.00 33.87 3.69
125 126 7.253905 TGTTATTATCCATACTAAGGCCTCC 57.746 40.000 5.23 0.00 0.00 4.30
126 127 7.281100 GCATGTTATTATCCATACTAAGGCCTC 59.719 40.741 5.23 0.00 0.00 4.70
127 128 7.112779 GCATGTTATTATCCATACTAAGGCCT 58.887 38.462 0.00 0.00 0.00 5.19
128 129 6.884295 TGCATGTTATTATCCATACTAAGGCC 59.116 38.462 0.00 0.00 0.00 5.19
129 130 7.921786 TGCATGTTATTATCCATACTAAGGC 57.078 36.000 0.00 0.00 0.00 4.35
168 169 9.442047 CACCCCAAGATAAAATGAGTATATCTC 57.558 37.037 0.00 0.00 43.03 2.75
169 170 8.949421 ACACCCCAAGATAAAATGAGTATATCT 58.051 33.333 0.00 0.00 37.86 1.98
170 171 9.003658 CACACCCCAAGATAAAATGAGTATATC 57.996 37.037 0.00 0.00 0.00 1.63
171 172 8.502738 ACACACCCCAAGATAAAATGAGTATAT 58.497 33.333 0.00 0.00 0.00 0.86
172 173 7.867921 ACACACCCCAAGATAAAATGAGTATA 58.132 34.615 0.00 0.00 0.00 1.47
173 174 6.731467 ACACACCCCAAGATAAAATGAGTAT 58.269 36.000 0.00 0.00 0.00 2.12
174 175 6.134535 ACACACCCCAAGATAAAATGAGTA 57.865 37.500 0.00 0.00 0.00 2.59
175 176 4.998051 ACACACCCCAAGATAAAATGAGT 58.002 39.130 0.00 0.00 0.00 3.41
176 177 5.982890 AACACACCCCAAGATAAAATGAG 57.017 39.130 0.00 0.00 0.00 2.90
177 178 6.951198 ACATAACACACCCCAAGATAAAATGA 59.049 34.615 0.00 0.00 0.00 2.57
178 179 7.169158 ACATAACACACCCCAAGATAAAATG 57.831 36.000 0.00 0.00 0.00 2.32
179 180 7.790782 AACATAACACACCCCAAGATAAAAT 57.209 32.000 0.00 0.00 0.00 1.82
180 181 8.164733 TCTAACATAACACACCCCAAGATAAAA 58.835 33.333 0.00 0.00 0.00 1.52
181 182 7.691213 TCTAACATAACACACCCCAAGATAAA 58.309 34.615 0.00 0.00 0.00 1.40
182 183 7.037873 ACTCTAACATAACACACCCCAAGATAA 60.038 37.037 0.00 0.00 0.00 1.75
183 184 6.442564 ACTCTAACATAACACACCCCAAGATA 59.557 38.462 0.00 0.00 0.00 1.98
184 185 5.250774 ACTCTAACATAACACACCCCAAGAT 59.749 40.000 0.00 0.00 0.00 2.40
185 186 4.595781 ACTCTAACATAACACACCCCAAGA 59.404 41.667 0.00 0.00 0.00 3.02
186 187 4.906618 ACTCTAACATAACACACCCCAAG 58.093 43.478 0.00 0.00 0.00 3.61
187 188 4.986054 ACTCTAACATAACACACCCCAA 57.014 40.909 0.00 0.00 0.00 4.12
188 189 5.307456 TGTTACTCTAACATAACACACCCCA 59.693 40.000 0.00 0.00 43.23 4.96
189 190 5.797051 TGTTACTCTAACATAACACACCCC 58.203 41.667 0.00 0.00 43.23 4.95
215 216 9.251440 AGTAGACAGATACTTGTGGTAACATAA 57.749 33.333 0.00 0.00 46.24 1.90
216 217 8.818622 AGTAGACAGATACTTGTGGTAACATA 57.181 34.615 0.00 0.00 40.31 2.29
217 218 7.396339 TGAGTAGACAGATACTTGTGGTAACAT 59.604 37.037 0.00 0.00 42.16 2.71
218 219 6.717997 TGAGTAGACAGATACTTGTGGTAACA 59.282 38.462 0.00 0.00 39.42 2.41
219 220 7.154435 TGAGTAGACAGATACTTGTGGTAAC 57.846 40.000 0.00 0.00 36.13 2.50
220 221 7.956328 ATGAGTAGACAGATACTTGTGGTAA 57.044 36.000 0.00 0.00 36.13 2.85
221 222 7.956328 AATGAGTAGACAGATACTTGTGGTA 57.044 36.000 0.00 0.00 36.13 3.25
222 223 6.859112 AATGAGTAGACAGATACTTGTGGT 57.141 37.500 0.00 0.00 36.13 4.16
223 224 8.470805 AGTTAATGAGTAGACAGATACTTGTGG 58.529 37.037 0.00 0.00 36.13 4.17
224 225 9.509855 GAGTTAATGAGTAGACAGATACTTGTG 57.490 37.037 0.00 0.00 36.13 3.33
225 226 8.688151 GGAGTTAATGAGTAGACAGATACTTGT 58.312 37.037 0.00 0.00 36.13 3.16
226 227 8.687242 TGGAGTTAATGAGTAGACAGATACTTG 58.313 37.037 0.00 0.00 36.13 3.16
227 228 8.824756 TGGAGTTAATGAGTAGACAGATACTT 57.175 34.615 0.00 0.00 36.13 2.24
230 231 9.298250 GGTATGGAGTTAATGAGTAGACAGATA 57.702 37.037 0.00 0.00 0.00 1.98
231 232 7.785028 TGGTATGGAGTTAATGAGTAGACAGAT 59.215 37.037 0.00 0.00 0.00 2.90
232 233 7.123383 TGGTATGGAGTTAATGAGTAGACAGA 58.877 38.462 0.00 0.00 0.00 3.41
233 234 7.348080 TGGTATGGAGTTAATGAGTAGACAG 57.652 40.000 0.00 0.00 0.00 3.51
234 235 7.914427 ATGGTATGGAGTTAATGAGTAGACA 57.086 36.000 0.00 0.00 0.00 3.41
314 315 4.538746 ACTACTTTGACTTGGGCTAGTC 57.461 45.455 11.65 11.65 43.86 2.59
315 316 4.836736 TGTACTACTTTGACTTGGGCTAGT 59.163 41.667 0.00 0.00 0.00 2.57
316 317 5.401531 TGTACTACTTTGACTTGGGCTAG 57.598 43.478 0.00 0.00 0.00 3.42
317 318 5.811796 TTGTACTACTTTGACTTGGGCTA 57.188 39.130 0.00 0.00 0.00 3.93
318 319 4.699925 TTGTACTACTTTGACTTGGGCT 57.300 40.909 0.00 0.00 0.00 5.19
319 320 5.959618 AATTGTACTACTTTGACTTGGGC 57.040 39.130 0.00 0.00 0.00 5.36
320 321 9.226606 TCAATAATTGTACTACTTTGACTTGGG 57.773 33.333 0.00 0.00 0.00 4.12
344 345 2.886523 CACTCATTTTGCCCTGACTTCA 59.113 45.455 0.00 0.00 0.00 3.02
376 377 2.545526 CTCGGTGGTGATTACATGCATC 59.454 50.000 0.00 0.00 0.00 3.91
483 522 6.976934 ACATAGAAAATTCAACCCAACACT 57.023 33.333 0.00 0.00 0.00 3.55
526 576 8.301002 TGTCAGTTTCCTTAAATTATTTTCCGG 58.699 33.333 0.00 0.00 0.00 5.14
527 577 9.855021 ATGTCAGTTTCCTTAAATTATTTTCCG 57.145 29.630 0.00 0.00 0.00 4.30
559 609 0.768221 AGACAGGGAACAAGAGGGCA 60.768 55.000 0.00 0.00 0.00 5.36
564 614 0.966920 GACGGAGACAGGGAACAAGA 59.033 55.000 0.00 0.00 0.00 3.02
571 622 3.775654 GCCAGGACGGAGACAGGG 61.776 72.222 0.00 0.00 36.56 4.45
588 639 0.179084 TATTTCAGCGAGAAGGGCCG 60.179 55.000 0.00 0.00 37.57 6.13
648 1874 3.003585 TCAGTGAACATGTTGTGTCATGC 59.996 43.478 17.58 0.00 46.15 4.06
682 1909 1.323412 CCTCTGGTCCCATCTACGAG 58.677 60.000 0.00 0.00 0.00 4.18
776 2036 1.448985 AACTGTTGTTGTCACGCTGT 58.551 45.000 0.00 0.00 34.71 4.40
838 2126 1.617357 GGTAGTTTCTGGAGACGGTGT 59.383 52.381 0.00 0.00 38.16 4.16
873 2161 1.134098 AGGCTATTTGTACCGCAGCAT 60.134 47.619 0.00 0.00 33.86 3.79
1047 4223 2.127271 TCGTCCCGTTGATGTAGGTA 57.873 50.000 0.00 0.00 0.00 3.08
1081 4257 2.824041 GCGGGCGTCAATGATGGT 60.824 61.111 4.48 0.00 0.00 3.55
1384 4586 4.329545 ATGGCCGTGCGACTTGGT 62.330 61.111 0.00 0.00 0.00 3.67
1416 4618 1.639298 GCCTGAGCATGACGTGGAAC 61.639 60.000 0.00 0.00 39.53 3.62
1500 4702 0.949397 CCATGGCCAGATTGTCGATG 59.051 55.000 13.05 0.02 0.00 3.84
1507 4709 2.194056 CTCCGCCATGGCCAGATT 59.806 61.111 30.79 0.00 37.80 2.40
1587 4789 4.512961 ACGCGCGATCAGCCATGA 62.513 61.111 39.36 0.00 44.76 3.07
1647 4868 4.969816 AGTAAATTCGTGCATGCAAGTAC 58.030 39.130 28.75 22.85 0.00 2.73
1651 4872 5.176590 GGAAAAAGTAAATTCGTGCATGCAA 59.823 36.000 24.58 7.64 0.00 4.08
1712 4941 7.154656 CCCTAATCACAGATCGACAAATATGA 58.845 38.462 0.00 0.00 0.00 2.15
1713 4942 6.931281 ACCCTAATCACAGATCGACAAATATG 59.069 38.462 0.00 0.00 0.00 1.78
1735 4964 3.520290 TGATCACATTCGTCTACACCC 57.480 47.619 0.00 0.00 0.00 4.61
1770 5003 2.358193 TACGTGCAGTGCGGTTCTGT 62.358 55.000 15.62 7.70 35.60 3.41
1812 5046 5.941555 AGAAATAAGTGGCTAGTAGCTGT 57.058 39.130 21.20 7.27 41.99 4.40
1813 5047 6.806751 TGTAGAAATAAGTGGCTAGTAGCTG 58.193 40.000 21.20 0.00 41.99 4.24
1952 5192 2.967362 CATGCATGCAACTGGAAACAT 58.033 42.857 26.68 0.00 41.51 2.71
2084 5333 0.304705 CAGGCCATAATTCGTGCGTC 59.695 55.000 5.01 0.00 0.00 5.19
2104 5353 6.765989 TGCCTCTTTACATCAAAATATAGCGT 59.234 34.615 0.00 0.00 0.00 5.07
2129 5378 3.009723 CGTCCTTCATTGTTGGCTGTAT 58.990 45.455 0.00 0.00 0.00 2.29
2143 5392 0.038526 TTCCTGCGTCTTCGTCCTTC 60.039 55.000 0.00 0.00 39.49 3.46
2193 5454 4.235939 TGTGTTTTACGCGGTTAGTCTA 57.764 40.909 12.47 0.00 0.00 2.59
2194 5455 3.096489 TGTGTTTTACGCGGTTAGTCT 57.904 42.857 12.47 0.00 0.00 3.24
2195 5456 3.534889 GTTGTGTTTTACGCGGTTAGTC 58.465 45.455 12.47 0.00 0.00 2.59
2196 5457 2.287644 GGTTGTGTTTTACGCGGTTAGT 59.712 45.455 12.47 0.00 0.00 2.24
2197 5458 2.349722 GGGTTGTGTTTTACGCGGTTAG 60.350 50.000 12.47 0.00 0.00 2.34
2200 5461 1.774046 CGGGTTGTGTTTTACGCGGT 61.774 55.000 12.47 0.00 44.02 5.68
2204 5465 3.959573 TTTACCGGGTTGTGTTTTACG 57.040 42.857 4.31 0.00 0.00 3.18
2215 5476 1.232119 CGACTTTGCTTTTACCGGGT 58.768 50.000 6.32 4.46 0.00 5.28
2223 5484 0.109723 TGCCTACCCGACTTTGCTTT 59.890 50.000 0.00 0.00 0.00 3.51
2226 5487 1.429148 CGATGCCTACCCGACTTTGC 61.429 60.000 0.00 0.00 0.00 3.68
2233 5495 0.319900 CTCCATTCGATGCCTACCCG 60.320 60.000 0.00 0.00 0.00 5.28
2249 5511 0.741221 AAAGCGACGATCCAAGCTCC 60.741 55.000 0.00 0.00 39.25 4.70
2251 5513 1.021390 CCAAAGCGACGATCCAAGCT 61.021 55.000 0.00 0.00 42.35 3.74
2252 5514 1.425428 CCAAAGCGACGATCCAAGC 59.575 57.895 0.00 0.00 0.00 4.01
2253 5515 1.982073 GCCCAAAGCGACGATCCAAG 61.982 60.000 0.00 0.00 0.00 3.61
2265 5529 5.298276 TCAGTGTAAGTTTTACAGCCCAAAG 59.702 40.000 2.12 0.00 0.00 2.77
2271 5536 7.422399 TGGAAAATCAGTGTAAGTTTTACAGC 58.578 34.615 2.12 0.00 31.40 4.40
2279 5544 6.476378 AGCAGTATGGAAAATCAGTGTAAGT 58.524 36.000 0.00 0.00 35.86 2.24
2280 5545 6.992063 AGCAGTATGGAAAATCAGTGTAAG 57.008 37.500 0.00 0.00 35.86 2.34
2285 5550 4.379813 CGCAAAGCAGTATGGAAAATCAGT 60.380 41.667 0.00 0.00 35.86 3.41
2287 5552 3.119531 CCGCAAAGCAGTATGGAAAATCA 60.120 43.478 0.00 0.00 35.86 2.57
2290 5555 1.543802 CCCGCAAAGCAGTATGGAAAA 59.456 47.619 0.00 0.00 35.86 2.29
2295 5560 0.392998 AGGACCCGCAAAGCAGTATG 60.393 55.000 0.00 0.00 40.87 2.39
2298 5563 0.605589 GTAAGGACCCGCAAAGCAGT 60.606 55.000 0.00 0.00 0.00 4.40
2299 5564 0.605319 TGTAAGGACCCGCAAAGCAG 60.605 55.000 0.00 0.00 0.00 4.24
2300 5565 0.887387 GTGTAAGGACCCGCAAAGCA 60.887 55.000 0.00 0.00 0.00 3.91
2301 5566 0.605589 AGTGTAAGGACCCGCAAAGC 60.606 55.000 0.00 0.00 0.00 3.51
2302 5567 1.535462 CAAGTGTAAGGACCCGCAAAG 59.465 52.381 0.00 0.00 0.00 2.77
2303 5568 1.134037 ACAAGTGTAAGGACCCGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
2304 5569 0.470766 ACAAGTGTAAGGACCCGCAA 59.529 50.000 0.00 0.00 0.00 4.85
2305 5570 1.274167 CTACAAGTGTAAGGACCCGCA 59.726 52.381 0.00 0.00 0.00 5.69
2306 5571 1.547372 TCTACAAGTGTAAGGACCCGC 59.453 52.381 0.00 0.00 0.00 6.13
2307 5572 3.947910 TTCTACAAGTGTAAGGACCCG 57.052 47.619 0.00 0.00 0.00 5.28
2308 5573 4.450080 CGTTTTCTACAAGTGTAAGGACCC 59.550 45.833 0.00 0.00 0.00 4.46
2309 5574 4.450080 CCGTTTTCTACAAGTGTAAGGACC 59.550 45.833 0.00 0.00 0.00 4.46
2310 5575 4.084171 GCCGTTTTCTACAAGTGTAAGGAC 60.084 45.833 0.00 0.00 0.00 3.85
2311 5576 4.060205 GCCGTTTTCTACAAGTGTAAGGA 58.940 43.478 0.00 0.00 0.00 3.36
2312 5577 3.187842 GGCCGTTTTCTACAAGTGTAAGG 59.812 47.826 0.00 0.00 0.00 2.69
2313 5578 3.187842 GGGCCGTTTTCTACAAGTGTAAG 59.812 47.826 0.00 0.00 0.00 2.34
2314 5579 3.140623 GGGCCGTTTTCTACAAGTGTAA 58.859 45.455 0.00 0.00 0.00 2.41
2315 5580 2.104451 TGGGCCGTTTTCTACAAGTGTA 59.896 45.455 0.00 0.00 0.00 2.90
2316 5581 1.134037 TGGGCCGTTTTCTACAAGTGT 60.134 47.619 0.00 0.00 0.00 3.55
2317 5582 1.600023 TGGGCCGTTTTCTACAAGTG 58.400 50.000 0.00 0.00 0.00 3.16
2318 5583 2.579410 ATGGGCCGTTTTCTACAAGT 57.421 45.000 0.00 0.00 0.00 3.16
2319 5584 3.005367 ACAAATGGGCCGTTTTCTACAAG 59.995 43.478 20.95 10.48 0.00 3.16
2320 5585 2.959707 ACAAATGGGCCGTTTTCTACAA 59.040 40.909 20.95 0.00 0.00 2.41
2321 5586 2.588620 ACAAATGGGCCGTTTTCTACA 58.411 42.857 20.95 0.00 0.00 2.74
2322 5587 3.571571 GAACAAATGGGCCGTTTTCTAC 58.428 45.455 20.95 9.31 0.00 2.59
2323 5588 2.559231 GGAACAAATGGGCCGTTTTCTA 59.441 45.455 20.95 0.00 0.00 2.10
2324 5589 1.343142 GGAACAAATGGGCCGTTTTCT 59.657 47.619 20.95 10.92 0.00 2.52
2325 5590 1.790755 GGAACAAATGGGCCGTTTTC 58.209 50.000 20.95 16.20 0.00 2.29
2326 5591 0.032815 CGGAACAAATGGGCCGTTTT 59.967 50.000 20.95 8.07 38.99 2.43
2327 5592 1.663173 CGGAACAAATGGGCCGTTT 59.337 52.632 17.99 17.99 38.99 3.60
2328 5593 2.272447 CCGGAACAAATGGGCCGTT 61.272 57.895 4.80 4.80 42.08 4.44
2329 5594 2.493273 ATCCGGAACAAATGGGCCGT 62.493 55.000 9.01 0.00 42.08 5.68
2330 5595 1.724582 GATCCGGAACAAATGGGCCG 61.725 60.000 9.01 8.62 43.20 6.13
2331 5596 0.395724 AGATCCGGAACAAATGGGCC 60.396 55.000 9.01 0.00 0.00 5.80
2332 5597 2.158813 TCTAGATCCGGAACAAATGGGC 60.159 50.000 9.01 0.00 0.00 5.36
2333 5598 3.495100 CCTCTAGATCCGGAACAAATGGG 60.495 52.174 9.01 2.00 0.00 4.00
2334 5599 3.733337 CCTCTAGATCCGGAACAAATGG 58.267 50.000 9.01 3.67 0.00 3.16
2335 5600 3.134458 GCCTCTAGATCCGGAACAAATG 58.866 50.000 9.01 0.00 0.00 2.32
2336 5601 2.104963 GGCCTCTAGATCCGGAACAAAT 59.895 50.000 9.01 0.00 0.00 2.32
2337 5602 1.485066 GGCCTCTAGATCCGGAACAAA 59.515 52.381 9.01 0.00 0.00 2.83
2338 5603 1.120530 GGCCTCTAGATCCGGAACAA 58.879 55.000 9.01 0.00 0.00 2.83
2339 5604 0.759436 GGGCCTCTAGATCCGGAACA 60.759 60.000 9.01 0.00 0.00 3.18
2340 5605 0.470268 AGGGCCTCTAGATCCGGAAC 60.470 60.000 9.01 5.70 0.00 3.62
2341 5606 0.264955 AAGGGCCTCTAGATCCGGAA 59.735 55.000 9.01 0.00 0.00 4.30
2342 5607 0.264955 AAAGGGCCTCTAGATCCGGA 59.735 55.000 6.61 6.61 0.00 5.14
2343 5608 1.896465 CTAAAGGGCCTCTAGATCCGG 59.104 57.143 8.27 0.00 0.00 5.14
2344 5609 1.273886 GCTAAAGGGCCTCTAGATCCG 59.726 57.143 18.21 0.00 0.00 4.18
2355 5620 0.916809 TAGAACAGGGGCTAAAGGGC 59.083 55.000 0.00 0.00 40.05 5.19
2356 5621 2.478292 TCTAGAACAGGGGCTAAAGGG 58.522 52.381 0.00 0.00 0.00 3.95
2357 5622 3.370633 GGTTCTAGAACAGGGGCTAAAGG 60.371 52.174 31.30 0.00 42.85 3.11
2358 5623 3.679083 CGGTTCTAGAACAGGGGCTAAAG 60.679 52.174 31.30 9.61 42.85 1.85
2359 5624 2.235402 CGGTTCTAGAACAGGGGCTAAA 59.765 50.000 31.30 0.00 42.85 1.85
2360 5625 1.829222 CGGTTCTAGAACAGGGGCTAA 59.171 52.381 31.30 0.00 42.85 3.09
2361 5626 1.481871 CGGTTCTAGAACAGGGGCTA 58.518 55.000 31.30 0.00 42.85 3.93
2362 5627 2.287829 CGGTTCTAGAACAGGGGCT 58.712 57.895 31.30 0.00 42.85 5.19
2363 5628 4.934989 CGGTTCTAGAACAGGGGC 57.065 61.111 31.30 15.99 42.85 5.80
2367 5632 4.381718 CCTTTAGTCCCGGTTCTAGAACAG 60.382 50.000 31.30 27.60 42.85 3.16
2368 5633 3.512724 CCTTTAGTCCCGGTTCTAGAACA 59.487 47.826 31.30 12.75 42.85 3.18
2369 5634 3.118847 CCCTTTAGTCCCGGTTCTAGAAC 60.119 52.174 24.73 24.73 40.45 3.01
2370 5635 3.102204 CCCTTTAGTCCCGGTTCTAGAA 58.898 50.000 0.00 0.00 0.00 2.10
2371 5636 2.743553 CCCTTTAGTCCCGGTTCTAGA 58.256 52.381 0.00 0.00 0.00 2.43
2372 5637 1.138464 GCCCTTTAGTCCCGGTTCTAG 59.862 57.143 0.00 0.00 0.00 2.43
2373 5638 1.197812 GCCCTTTAGTCCCGGTTCTA 58.802 55.000 0.00 0.00 0.00 2.10
2374 5639 1.559965 GGCCCTTTAGTCCCGGTTCT 61.560 60.000 0.00 0.15 0.00 3.01
2375 5640 1.077930 GGCCCTTTAGTCCCGGTTC 60.078 63.158 0.00 0.00 0.00 3.62
2376 5641 2.963101 CGGCCCTTTAGTCCCGGTT 61.963 63.158 0.00 0.00 37.21 4.44
2377 5642 3.396570 CGGCCCTTTAGTCCCGGT 61.397 66.667 0.00 0.00 37.21 5.28
2379 5644 2.864378 GAACCGGCCCTTTAGTCCCG 62.864 65.000 0.00 0.00 40.39 5.14
2380 5645 1.077930 GAACCGGCCCTTTAGTCCC 60.078 63.158 0.00 0.00 0.00 4.46
2381 5646 0.675837 GTGAACCGGCCCTTTAGTCC 60.676 60.000 0.00 0.00 0.00 3.85
2382 5647 0.035739 TGTGAACCGGCCCTTTAGTC 59.964 55.000 0.00 0.00 0.00 2.59
2383 5648 0.696501 ATGTGAACCGGCCCTTTAGT 59.303 50.000 0.00 0.00 0.00 2.24
2384 5649 1.094785 CATGTGAACCGGCCCTTTAG 58.905 55.000 0.00 0.00 0.00 1.85
2385 5650 0.963355 GCATGTGAACCGGCCCTTTA 60.963 55.000 0.00 0.00 0.00 1.85
2386 5651 2.275380 GCATGTGAACCGGCCCTTT 61.275 57.895 0.00 0.00 0.00 3.11
2387 5652 2.676471 GCATGTGAACCGGCCCTT 60.676 61.111 0.00 0.00 0.00 3.95
2390 5655 3.053291 TTCGCATGTGAACCGGCC 61.053 61.111 17.57 0.00 0.00 6.13
2391 5656 2.175811 GTTCGCATGTGAACCGGC 59.824 61.111 32.58 14.57 41.88 6.13
2395 5660 0.110056 CCAGCAGTTCGCATGTGAAC 60.110 55.000 34.51 34.51 46.78 3.18
2396 5661 1.236616 CCCAGCAGTTCGCATGTGAA 61.237 55.000 17.57 17.57 46.13 3.18
2397 5662 1.672030 CCCAGCAGTTCGCATGTGA 60.672 57.895 4.45 4.45 46.13 3.58
2398 5663 2.693762 CCCCAGCAGTTCGCATGTG 61.694 63.158 0.00 0.00 46.13 3.21
2399 5664 2.202236 ATCCCCAGCAGTTCGCATGT 62.202 55.000 0.00 0.00 46.13 3.21
2400 5665 0.179048 TATCCCCAGCAGTTCGCATG 60.179 55.000 0.00 0.00 46.13 4.06
2401 5666 0.767375 ATATCCCCAGCAGTTCGCAT 59.233 50.000 0.00 0.00 46.13 4.73
2402 5667 1.419381 TATATCCCCAGCAGTTCGCA 58.581 50.000 0.00 0.00 46.13 5.10
2403 5668 2.143925 GTTATATCCCCAGCAGTTCGC 58.856 52.381 0.00 0.00 42.91 4.70
2404 5669 3.753294 AGTTATATCCCCAGCAGTTCG 57.247 47.619 0.00 0.00 0.00 3.95
2405 5670 5.940470 CCAATAGTTATATCCCCAGCAGTTC 59.060 44.000 0.00 0.00 0.00 3.01
2406 5671 5.372661 ACCAATAGTTATATCCCCAGCAGTT 59.627 40.000 0.00 0.00 0.00 3.16
2407 5672 4.913968 ACCAATAGTTATATCCCCAGCAGT 59.086 41.667 0.00 0.00 0.00 4.40
2408 5673 5.505181 ACCAATAGTTATATCCCCAGCAG 57.495 43.478 0.00 0.00 0.00 4.24
2409 5674 6.733334 TCATACCAATAGTTATATCCCCAGCA 59.267 38.462 0.00 0.00 0.00 4.41
2410 5675 7.048512 GTCATACCAATAGTTATATCCCCAGC 58.951 42.308 0.00 0.00 0.00 4.85
2411 5676 7.365652 GGGTCATACCAATAGTTATATCCCCAG 60.366 44.444 0.00 0.00 41.02 4.45
2412 5677 6.445786 GGGTCATACCAATAGTTATATCCCCA 59.554 42.308 0.00 0.00 41.02 4.96
2413 5678 6.407752 CGGGTCATACCAATAGTTATATCCCC 60.408 46.154 0.00 0.00 41.02 4.81
2414 5679 6.579865 CGGGTCATACCAATAGTTATATCCC 58.420 44.000 0.00 0.00 41.02 3.85
2415 5680 6.047231 GCGGGTCATACCAATAGTTATATCC 58.953 44.000 0.00 0.00 41.02 2.59
2416 5681 6.875076 AGCGGGTCATACCAATAGTTATATC 58.125 40.000 0.00 0.00 41.02 1.63
2417 5682 6.405508 CGAGCGGGTCATACCAATAGTTATAT 60.406 42.308 8.06 0.00 41.02 0.86
2418 5683 5.106038 CGAGCGGGTCATACCAATAGTTATA 60.106 44.000 8.06 0.00 41.02 0.98
2419 5684 4.321750 CGAGCGGGTCATACCAATAGTTAT 60.322 45.833 8.06 0.00 41.02 1.89
2420 5685 3.005050 CGAGCGGGTCATACCAATAGTTA 59.995 47.826 8.06 0.00 41.02 2.24
2421 5686 2.223971 CGAGCGGGTCATACCAATAGTT 60.224 50.000 8.06 0.00 41.02 2.24
2422 5687 1.340248 CGAGCGGGTCATACCAATAGT 59.660 52.381 8.06 0.00 41.02 2.12
2423 5688 1.336887 CCGAGCGGGTCATACCAATAG 60.337 57.143 8.06 0.00 41.02 1.73
2424 5689 0.677288 CCGAGCGGGTCATACCAATA 59.323 55.000 8.06 0.00 41.02 1.90
2425 5690 1.445942 CCGAGCGGGTCATACCAAT 59.554 57.895 8.06 0.00 41.02 3.16
2426 5691 2.897207 CCGAGCGGGTCATACCAA 59.103 61.111 8.06 0.00 41.02 3.67
2442 5707 4.791069 TACGACCAGGCCCCTCCC 62.791 72.222 0.00 0.00 34.51 4.30
2443 5708 3.468140 GTACGACCAGGCCCCTCC 61.468 72.222 0.00 0.00 0.00 4.30
2444 5709 1.988406 AAGTACGACCAGGCCCCTC 60.988 63.158 0.00 0.00 0.00 4.30
2445 5710 2.122056 AAGTACGACCAGGCCCCT 59.878 61.111 0.00 0.00 0.00 4.79
2446 5711 2.267961 CAAGTACGACCAGGCCCC 59.732 66.667 0.00 0.00 0.00 5.80
2447 5712 2.436115 GCAAGTACGACCAGGCCC 60.436 66.667 0.00 0.00 0.00 5.80
2448 5713 1.298859 CTTGCAAGTACGACCAGGCC 61.299 60.000 18.65 0.00 0.00 5.19
2449 5714 0.602905 ACTTGCAAGTACGACCAGGC 60.603 55.000 30.25 0.00 37.52 4.85
2450 5715 1.148310 CACTTGCAAGTACGACCAGG 58.852 55.000 30.67 12.86 37.08 4.45
2451 5716 1.865865 ACACTTGCAAGTACGACCAG 58.134 50.000 30.67 18.75 37.08 4.00
2452 5717 2.159014 AGAACACTTGCAAGTACGACCA 60.159 45.455 30.67 0.00 37.08 4.02
2453 5718 2.480845 AGAACACTTGCAAGTACGACC 58.519 47.619 30.67 17.42 37.08 4.79
2454 5719 3.554324 TCAAGAACACTTGCAAGTACGAC 59.446 43.478 30.67 20.52 40.28 4.34
2455 5720 3.787785 TCAAGAACACTTGCAAGTACGA 58.212 40.909 30.67 17.08 40.28 3.43
2456 5721 4.518217 CTTCAAGAACACTTGCAAGTACG 58.482 43.478 30.67 21.55 40.28 3.67
2457 5722 4.282873 GCTTCAAGAACACTTGCAAGTAC 58.717 43.478 30.67 22.74 40.28 2.73
2458 5723 3.315191 GGCTTCAAGAACACTTGCAAGTA 59.685 43.478 30.67 11.74 40.28 2.24
2459 5724 2.099756 GGCTTCAAGAACACTTGCAAGT 59.900 45.455 26.36 26.36 40.28 3.16
2460 5725 2.544486 GGGCTTCAAGAACACTTGCAAG 60.544 50.000 24.84 24.84 40.28 4.01
2461 5726 1.408702 GGGCTTCAAGAACACTTGCAA 59.591 47.619 0.00 0.00 40.28 4.08
2462 5727 1.032014 GGGCTTCAAGAACACTTGCA 58.968 50.000 0.00 0.00 40.28 4.08
2463 5728 1.032014 TGGGCTTCAAGAACACTTGC 58.968 50.000 0.00 0.00 40.28 4.01
2473 5738 1.460255 CCTGGGTCTTGGGCTTCAA 59.540 57.895 0.00 0.00 0.00 2.69
2474 5739 3.170362 CCTGGGTCTTGGGCTTCA 58.830 61.111 0.00 0.00 0.00 3.02
2475 5740 2.361737 GCCTGGGTCTTGGGCTTC 60.362 66.667 0.00 0.00 42.31 3.86
2476 5741 3.984732 GGCCTGGGTCTTGGGCTT 61.985 66.667 0.00 0.00 44.70 4.35
2479 5744 2.043652 CATGGCCTGGGTCTTGGG 60.044 66.667 3.32 0.00 0.00 4.12
2480 5745 1.941403 ATCCATGGCCTGGGTCTTGG 61.941 60.000 16.93 16.93 45.98 3.61
2481 5746 0.754217 CATCCATGGCCTGGGTCTTG 60.754 60.000 17.89 9.23 45.98 3.02
2482 5747 1.616921 CATCCATGGCCTGGGTCTT 59.383 57.895 17.89 2.12 45.98 3.01
2483 5748 2.389449 CCATCCATGGCCTGGGTCT 61.389 63.158 20.19 4.04 45.98 3.85
2484 5749 2.196776 CCATCCATGGCCTGGGTC 59.803 66.667 20.19 0.00 45.98 4.46
2493 5758 4.202010 CCTTAAACTAAACCGCCATCCATG 60.202 45.833 0.00 0.00 0.00 3.66
2494 5759 3.951680 CCTTAAACTAAACCGCCATCCAT 59.048 43.478 0.00 0.00 0.00 3.41
2495 5760 3.349022 CCTTAAACTAAACCGCCATCCA 58.651 45.455 0.00 0.00 0.00 3.41
2496 5761 2.098607 GCCTTAAACTAAACCGCCATCC 59.901 50.000 0.00 0.00 0.00 3.51
2497 5762 2.098607 GGCCTTAAACTAAACCGCCATC 59.901 50.000 0.00 0.00 34.98 3.51
2498 5763 2.097036 GGCCTTAAACTAAACCGCCAT 58.903 47.619 0.00 0.00 34.98 4.40
2499 5764 1.536940 GGCCTTAAACTAAACCGCCA 58.463 50.000 0.00 0.00 34.98 5.69
2500 5765 0.813184 GGGCCTTAAACTAAACCGCC 59.187 55.000 0.84 0.00 0.00 6.13
2501 5766 1.536940 TGGGCCTTAAACTAAACCGC 58.463 50.000 4.53 0.00 0.00 5.68
2502 5767 2.425668 CCATGGGCCTTAAACTAAACCG 59.574 50.000 2.85 0.00 0.00 4.44
2503 5768 2.167693 GCCATGGGCCTTAAACTAAACC 59.832 50.000 15.13 0.00 44.06 3.27
2504 5769 3.520290 GCCATGGGCCTTAAACTAAAC 57.480 47.619 15.13 0.00 44.06 2.01
2517 5782 3.083349 TCGTCTCTGGGCCATGGG 61.083 66.667 15.13 0.85 0.00 4.00
2518 5783 1.903877 AAGTCGTCTCTGGGCCATGG 61.904 60.000 6.72 7.63 0.00 3.66
2519 5784 0.824109 TAAGTCGTCTCTGGGCCATG 59.176 55.000 6.72 3.08 0.00 3.66
2520 5785 1.482593 CTTAAGTCGTCTCTGGGCCAT 59.517 52.381 6.72 0.00 0.00 4.40
2521 5786 0.895530 CTTAAGTCGTCTCTGGGCCA 59.104 55.000 5.85 5.85 0.00 5.36
2522 5787 0.175989 CCTTAAGTCGTCTCTGGGCC 59.824 60.000 0.00 0.00 0.00 5.80
2523 5788 0.460459 GCCTTAAGTCGTCTCTGGGC 60.460 60.000 0.97 0.00 0.00 5.36
2524 5789 0.895530 TGCCTTAAGTCGTCTCTGGG 59.104 55.000 0.97 0.00 0.00 4.45
2525 5790 2.093973 ACATGCCTTAAGTCGTCTCTGG 60.094 50.000 0.97 0.00 0.00 3.86
2526 5791 3.238108 ACATGCCTTAAGTCGTCTCTG 57.762 47.619 0.97 0.00 0.00 3.35
2527 5792 4.017808 ACTACATGCCTTAAGTCGTCTCT 58.982 43.478 0.97 0.00 0.00 3.10
2528 5793 4.106197 CACTACATGCCTTAAGTCGTCTC 58.894 47.826 0.97 0.00 0.00 3.36
2529 5794 3.510360 ACACTACATGCCTTAAGTCGTCT 59.490 43.478 0.97 0.00 0.00 4.18
2530 5795 3.846360 ACACTACATGCCTTAAGTCGTC 58.154 45.455 0.97 0.00 0.00 4.20
2531 5796 3.955650 ACACTACATGCCTTAAGTCGT 57.044 42.857 0.97 0.00 0.00 4.34
2532 5797 6.715344 TTTAACACTACATGCCTTAAGTCG 57.285 37.500 0.97 0.00 0.00 4.18
2533 5798 7.303261 GGTTTTAACACTACATGCCTTAAGTC 58.697 38.462 0.97 0.00 0.00 3.01
2534 5799 6.072893 CGGTTTTAACACTACATGCCTTAAGT 60.073 38.462 0.97 0.00 0.00 2.24
2535 5800 6.311723 CGGTTTTAACACTACATGCCTTAAG 58.688 40.000 0.00 0.00 0.00 1.85
2536 5801 5.335035 GCGGTTTTAACACTACATGCCTTAA 60.335 40.000 0.00 0.00 0.00 1.85
2537 5802 4.154556 GCGGTTTTAACACTACATGCCTTA 59.845 41.667 0.00 0.00 0.00 2.69
2538 5803 3.057806 GCGGTTTTAACACTACATGCCTT 60.058 43.478 0.00 0.00 0.00 4.35
2539 5804 2.486592 GCGGTTTTAACACTACATGCCT 59.513 45.455 0.00 0.00 0.00 4.75
2540 5805 2.414957 GGCGGTTTTAACACTACATGCC 60.415 50.000 0.00 0.00 0.00 4.40
2541 5806 2.226912 TGGCGGTTTTAACACTACATGC 59.773 45.455 0.00 0.00 0.00 4.06
2542 5807 4.083003 ACATGGCGGTTTTAACACTACATG 60.083 41.667 15.56 15.56 39.12 3.21
2543 5808 4.076394 ACATGGCGGTTTTAACACTACAT 58.924 39.130 0.00 0.00 0.00 2.29
2544 5809 3.478509 ACATGGCGGTTTTAACACTACA 58.521 40.909 0.00 0.00 0.00 2.74
2545 5810 5.448089 CCATACATGGCGGTTTTAACACTAC 60.448 44.000 0.00 0.00 41.75 2.73
2546 5811 4.636648 CCATACATGGCGGTTTTAACACTA 59.363 41.667 0.00 0.00 41.75 2.74
2547 5812 3.442273 CCATACATGGCGGTTTTAACACT 59.558 43.478 0.00 0.00 41.75 3.55
2548 5813 3.765026 CCATACATGGCGGTTTTAACAC 58.235 45.455 0.00 0.00 41.75 3.32
2562 5827 5.102953 ACAGTACAAGTCATGCCATACAT 57.897 39.130 0.00 0.00 40.66 2.29
2563 5828 4.551702 ACAGTACAAGTCATGCCATACA 57.448 40.909 0.00 0.00 0.00 2.29
2564 5829 6.255887 GTCTTACAGTACAAGTCATGCCATAC 59.744 42.308 0.00 0.00 0.00 2.39
2565 5830 6.071051 TGTCTTACAGTACAAGTCATGCCATA 60.071 38.462 0.00 0.00 0.00 2.74
2566 5831 5.178797 GTCTTACAGTACAAGTCATGCCAT 58.821 41.667 0.00 0.00 0.00 4.40
2567 5832 4.039852 TGTCTTACAGTACAAGTCATGCCA 59.960 41.667 0.00 0.00 0.00 4.92
2568 5833 4.566004 TGTCTTACAGTACAAGTCATGCC 58.434 43.478 0.00 0.00 0.00 4.40
2569 5834 6.158175 CTTGTCTTACAGTACAAGTCATGC 57.842 41.667 6.55 0.00 44.83 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.