Multiple sequence alignment - TraesCS3B01G118600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G118600 chr3B 100.000 3097 0 0 1 3097 85341538 85338442 0.000000e+00 5720.0
1 TraesCS3B01G118600 chr3B 97.419 620 15 1 1 619 781349481 781348862 0.000000e+00 1055.0
2 TraesCS3B01G118600 chr3B 84.242 1009 109 29 735 1709 87718913 87717921 0.000000e+00 937.0
3 TraesCS3B01G118600 chr3B 89.744 663 63 2 1047 1709 88202602 88201945 0.000000e+00 843.0
4 TraesCS3B01G118600 chr3B 87.849 716 76 6 1070 1779 85237825 85237115 0.000000e+00 830.0
5 TraesCS3B01G118600 chr3B 88.450 329 32 3 685 1008 85239955 85239628 2.900000e-105 392.0
6 TraesCS3B01G118600 chr3B 88.294 299 22 4 2312 2607 43682829 43683117 2.290000e-91 346.0
7 TraesCS3B01G118600 chr3B 79.452 292 34 14 2313 2600 821699131 821699400 1.900000e-42 183.0
8 TraesCS3B01G118600 chr3B 95.495 111 5 0 2618 2728 780445123 780445013 8.830000e-41 178.0
9 TraesCS3B01G118600 chr3B 95.455 88 3 1 2530 2617 779642160 779642246 4.160000e-29 139.0
10 TraesCS3B01G118600 chr3B 89.474 57 4 2 620 674 18238735 18238791 1.540000e-08 71.3
11 TraesCS3B01G118600 chr3B 87.931 58 3 4 620 674 39596461 39596517 7.170000e-07 65.8
12 TraesCS3B01G118600 chr3D 89.725 1275 88 16 1070 2312 56282325 56281062 0.000000e+00 1589.0
13 TraesCS3B01G118600 chr3D 87.170 1060 97 16 680 1713 55350385 55349339 0.000000e+00 1168.0
14 TraesCS3B01G118600 chr3D 90.198 908 52 12 1435 2312 56294721 56293821 0.000000e+00 1149.0
15 TraesCS3B01G118600 chr3D 88.820 805 53 12 1538 2312 56308310 56307513 0.000000e+00 953.0
16 TraesCS3B01G118600 chr3D 91.667 660 48 3 1054 1709 56350355 56349699 0.000000e+00 907.0
17 TraesCS3B01G118600 chr3D 88.683 539 58 1 1172 1710 55557513 55558048 0.000000e+00 654.0
18 TraesCS3B01G118600 chr3D 85.142 599 55 14 1187 1785 56395175 56394611 1.600000e-162 582.0
19 TraesCS3B01G118600 chr3D 89.418 378 34 4 1070 1445 56296280 56295907 3.620000e-129 472.0
20 TraesCS3B01G118600 chr3D 87.293 362 32 11 712 1064 55780613 55780969 4.810000e-108 401.0
21 TraesCS3B01G118600 chr3D 88.000 300 27 5 678 968 55943522 55943821 2.290000e-91 346.0
22 TraesCS3B01G118600 chr3D 91.589 214 17 1 2803 3015 56293657 56293444 8.400000e-76 294.0
23 TraesCS3B01G118600 chr3D 90.588 170 15 1 680 848 55536699 55536868 1.120000e-54 224.0
24 TraesCS3B01G118600 chr3D 81.068 206 21 9 2406 2595 551268687 551268890 6.920000e-32 148.0
25 TraesCS3B01G118600 chr3D 83.448 145 16 6 2462 2600 585073280 585073422 9.010000e-26 128.0
26 TraesCS3B01G118600 chr3D 96.610 59 2 0 1070 1128 55557462 55557520 7.070000e-17 99.0
27 TraesCS3B01G118600 chr3D 91.228 57 5 0 2728 2784 56281064 56281008 9.210000e-11 78.7
28 TraesCS3B01G118600 chr3D 91.228 57 5 0 2728 2784 56307515 56307459 9.210000e-11 78.7
29 TraesCS3B01G118600 chr1B 98.871 620 7 0 1 620 512625003 512624384 0.000000e+00 1107.0
30 TraesCS3B01G118600 chr1B 96.364 110 4 0 2618 2727 593600094 593599985 6.820000e-42 182.0
31 TraesCS3B01G118600 chr1B 91.870 123 10 0 2618 2740 26259286 26259164 4.110000e-39 172.0
32 TraesCS3B01G118600 chr1B 85.075 67 8 2 609 674 137627238 137627173 1.990000e-07 67.6
33 TraesCS3B01G118600 chr1B 87.719 57 5 2 620 674 15182565 15182621 7.170000e-07 65.8
34 TraesCS3B01G118600 chr1B 90.000 50 3 2 626 674 40789534 40789582 2.580000e-06 63.9
35 TraesCS3B01G118600 chr4A 98.548 620 8 1 1 620 726562950 726562332 0.000000e+00 1094.0
36 TraesCS3B01G118600 chr4A 93.966 116 5 2 2618 2732 730468597 730468711 1.140000e-39 174.0
37 TraesCS3B01G118600 chr4A 92.857 42 1 2 620 659 626955101 626955142 3.340000e-05 60.2
38 TraesCS3B01G118600 chr7B 98.223 619 11 0 1 619 582694949 582694331 0.000000e+00 1083.0
39 TraesCS3B01G118600 chr7B 91.667 180 14 1 2312 2490 134839460 134839281 6.630000e-62 248.0
40 TraesCS3B01G118600 chr7B 96.364 110 4 0 2618 2727 715553173 715553282 6.820000e-42 182.0
41 TraesCS3B01G118600 chr7B 96.364 110 4 0 2618 2727 748753367 748753476 6.820000e-42 182.0
42 TraesCS3B01G118600 chr3A 85.975 1041 108 16 678 1713 65701160 65700153 0.000000e+00 1079.0
43 TraesCS3B01G118600 chr3A 86.031 1038 107 16 678 1710 65765299 65766303 0.000000e+00 1079.0
44 TraesCS3B01G118600 chr3A 87.815 714 75 7 1070 1776 65829489 65828781 0.000000e+00 826.0
45 TraesCS3B01G118600 chr3A 82.311 424 34 20 6 396 422615474 422615059 2.300000e-86 329.0
46 TraesCS3B01G118600 chr6B 96.989 631 18 1 1 630 300675942 300676572 0.000000e+00 1059.0
47 TraesCS3B01G118600 chr6B 81.481 324 44 12 2313 2633 687113333 687113023 5.130000e-63 252.0
48 TraesCS3B01G118600 chr6B 96.262 107 4 0 2621 2727 43737779 43737673 3.170000e-40 176.0
49 TraesCS3B01G118600 chr6B 81.250 112 20 1 2802 2912 686863319 686863208 4.250000e-14 89.8
50 TraesCS3B01G118600 chr6B 87.931 58 3 4 620 674 93900756 93900700 7.170000e-07 65.8
51 TraesCS3B01G118600 chr7A 97.556 532 12 1 1 532 317893750 317893220 0.000000e+00 909.0
52 TraesCS3B01G118600 chr7A 83.810 420 34 20 6 396 195523128 195522714 4.880000e-98 368.0
53 TraesCS3B01G118600 chr7A 85.333 300 30 9 2312 2600 674985158 674985454 6.490000e-77 298.0
54 TraesCS3B01G118600 chr7A 80.447 179 17 12 450 620 126179420 126179252 1.510000e-23 121.0
55 TraesCS3B01G118600 chr7A 90.741 54 3 2 608 659 686166532 686166585 1.540000e-08 71.3
56 TraesCS3B01G118600 chr1D 85.071 422 28 16 6 396 470572155 470571738 6.220000e-107 398.0
57 TraesCS3B01G118600 chr1D 100.000 31 0 0 626 656 58754056 58754086 1.200000e-04 58.4
58 TraesCS3B01G118600 chr2B 82.583 333 24 14 2311 2617 1617848 1617524 2.370000e-66 263.0
59 TraesCS3B01G118600 chr2B 82.388 335 23 14 2311 2617 1546630 1546304 3.060000e-65 259.0
60 TraesCS3B01G118600 chr2B 81.737 334 26 14 2311 2617 1594013 1593688 2.390000e-61 246.0
61 TraesCS3B01G118600 chr2B 89.785 186 16 3 2313 2497 759515925 759515742 5.160000e-58 235.0
62 TraesCS3B01G118600 chr2B 80.625 160 27 4 2803 2959 569538043 569537885 1.510000e-23 121.0
63 TraesCS3B01G118600 chr2B 79.856 139 24 4 2823 2959 72827151 72827015 7.070000e-17 99.0
64 TraesCS3B01G118600 chrUn 91.061 179 14 2 2313 2490 261484879 261484702 1.110000e-59 241.0
65 TraesCS3B01G118600 chrUn 84.672 137 15 4 2463 2593 92502583 92502447 6.970000e-27 132.0
66 TraesCS3B01G118600 chrUn 79.618 157 20 10 2803 2959 79653346 79653202 5.460000e-18 102.0
67 TraesCS3B01G118600 chrUn 87.931 58 3 4 620 674 34137342 34137286 7.170000e-07 65.8
68 TraesCS3B01G118600 chr5D 91.061 179 14 2 2314 2490 23227639 23227461 1.110000e-59 241.0
69 TraesCS3B01G118600 chr7D 94.737 114 6 0 2618 2731 534486017 534485904 8.830000e-41 178.0
70 TraesCS3B01G118600 chr5B 78.832 274 38 11 2349 2617 697815654 697815912 1.910000e-37 167.0
71 TraesCS3B01G118600 chr5B 92.929 99 5 1 2524 2620 15535343 15535245 3.220000e-30 143.0
72 TraesCS3B01G118600 chr4B 88.321 137 12 4 2600 2735 644885520 644885387 8.890000e-36 161.0
73 TraesCS3B01G118600 chr4B 89.474 57 4 2 620 674 51120723 51120667 1.540000e-08 71.3
74 TraesCS3B01G118600 chr4B 78.448 116 15 9 2796 2905 623057846 623057957 1.990000e-07 67.6
75 TraesCS3B01G118600 chr4B 87.719 57 5 2 620 674 128562385 128562329 7.170000e-07 65.8
76 TraesCS3B01G118600 chr4B 92.683 41 1 2 620 658 543404642 543404682 1.200000e-04 58.4
77 TraesCS3B01G118600 chr4B 84.483 58 6 2 620 674 128562066 128562009 2.000000e-03 54.7
78 TraesCS3B01G118600 chr2D 78.443 167 31 5 2796 2959 45690412 45690248 1.520000e-18 104.0
79 TraesCS3B01G118600 chr2D 82.090 67 11 1 609 674 578576085 578576019 4.310000e-04 56.5
80 TraesCS3B01G118600 chr2A 78.947 152 25 7 2809 2956 62372573 62372721 2.540000e-16 97.1
81 TraesCS3B01G118600 chr2A 78.814 118 23 2 2789 2905 29649871 29649755 9.210000e-11 78.7
82 TraesCS3B01G118600 chr2A 87.719 57 3 4 620 673 431047225 431047280 2.580000e-06 63.9
83 TraesCS3B01G118600 chr6D 78.322 143 29 2 2793 2934 125977199 125977058 1.180000e-14 91.6
84 TraesCS3B01G118600 chr6D 92.000 50 3 1 620 668 460096855 460096904 5.540000e-08 69.4
85 TraesCS3B01G118600 chr6D 86.207 58 4 4 620 674 362955432 362955376 3.340000e-05 60.2
86 TraesCS3B01G118600 chr1A 73.932 234 48 9 2067 2294 22047895 22048121 7.120000e-12 82.4
87 TraesCS3B01G118600 chr1A 95.000 40 0 2 619 656 374960589 374960628 9.270000e-06 62.1
88 TraesCS3B01G118600 chr4D 96.970 33 1 0 626 658 236941074 236941042 4.310000e-04 56.5
89 TraesCS3B01G118600 chr6A 100.000 29 0 0 172 200 553938086 553938058 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G118600 chr3B 85338442 85341538 3096 True 5720.000000 5720 100.000000 1 3097 1 chr3B.!!$R1 3096
1 TraesCS3B01G118600 chr3B 781348862 781349481 619 True 1055.000000 1055 97.419000 1 619 1 chr3B.!!$R5 618
2 TraesCS3B01G118600 chr3B 87717921 87718913 992 True 937.000000 937 84.242000 735 1709 1 chr3B.!!$R2 974
3 TraesCS3B01G118600 chr3B 88201945 88202602 657 True 843.000000 843 89.744000 1047 1709 1 chr3B.!!$R3 662
4 TraesCS3B01G118600 chr3B 85237115 85239955 2840 True 611.000000 830 88.149500 685 1779 2 chr3B.!!$R6 1094
5 TraesCS3B01G118600 chr3D 55349339 55350385 1046 True 1168.000000 1168 87.170000 680 1713 1 chr3D.!!$R1 1033
6 TraesCS3B01G118600 chr3D 56349699 56350355 656 True 907.000000 907 91.667000 1054 1709 1 chr3D.!!$R2 655
7 TraesCS3B01G118600 chr3D 56281008 56282325 1317 True 833.850000 1589 90.476500 1070 2784 2 chr3D.!!$R4 1714
8 TraesCS3B01G118600 chr3D 56293444 56296280 2836 True 638.333333 1149 90.401667 1070 3015 3 chr3D.!!$R5 1945
9 TraesCS3B01G118600 chr3D 56394611 56395175 564 True 582.000000 582 85.142000 1187 1785 1 chr3D.!!$R3 598
10 TraesCS3B01G118600 chr3D 56307459 56308310 851 True 515.850000 953 90.024000 1538 2784 2 chr3D.!!$R6 1246
11 TraesCS3B01G118600 chr3D 55557462 55558048 586 False 376.500000 654 92.646500 1070 1710 2 chr3D.!!$F6 640
12 TraesCS3B01G118600 chr1B 512624384 512625003 619 True 1107.000000 1107 98.871000 1 620 1 chr1B.!!$R3 619
13 TraesCS3B01G118600 chr4A 726562332 726562950 618 True 1094.000000 1094 98.548000 1 620 1 chr4A.!!$R1 619
14 TraesCS3B01G118600 chr7B 582694331 582694949 618 True 1083.000000 1083 98.223000 1 619 1 chr7B.!!$R2 618
15 TraesCS3B01G118600 chr3A 65700153 65701160 1007 True 1079.000000 1079 85.975000 678 1713 1 chr3A.!!$R1 1035
16 TraesCS3B01G118600 chr3A 65765299 65766303 1004 False 1079.000000 1079 86.031000 678 1710 1 chr3A.!!$F1 1032
17 TraesCS3B01G118600 chr3A 65828781 65829489 708 True 826.000000 826 87.815000 1070 1776 1 chr3A.!!$R2 706
18 TraesCS3B01G118600 chr6B 300675942 300676572 630 False 1059.000000 1059 96.989000 1 630 1 chr6B.!!$F1 629
19 TraesCS3B01G118600 chr7A 317893220 317893750 530 True 909.000000 909 97.556000 1 532 1 chr7A.!!$R3 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 974 0.036875 CCCCACAGTCTCCAGAAACC 59.963 60.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 5319 0.037326 TGCACATCCACGGAGACTTC 60.037 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 240 9.290988 TGCAAGTTTCATTACTAGTGGAATTTA 57.709 29.630 5.39 0.00 0.00 1.40
446 448 1.178276 TGTGTGCGGGTTTGAAAAGT 58.822 45.000 0.00 0.00 0.00 2.66
449 451 3.192844 TGTGTGCGGGTTTGAAAAGTTTA 59.807 39.130 0.00 0.00 0.00 2.01
478 480 3.248125 CGACCCGTTTAAAGTTTGCAGTA 59.752 43.478 0.00 0.00 0.00 2.74
581 583 5.721000 TGGCTGGAAAAATATGGATGAAAGT 59.279 36.000 0.00 0.00 0.00 2.66
621 623 5.069251 CGGATGTAGAATAGACAGTCCCTTT 59.931 44.000 0.00 0.00 0.00 3.11
622 624 6.407074 CGGATGTAGAATAGACAGTCCCTTTT 60.407 42.308 0.00 0.00 0.00 2.27
623 625 7.339482 GGATGTAGAATAGACAGTCCCTTTTT 58.661 38.462 0.00 0.00 0.00 1.94
676 678 8.730680 AGATAAAATAACATTATCCACCATCGC 58.269 33.333 3.37 0.00 39.50 4.58
708 710 3.336568 TCCCCTCTCCGTCCTCGT 61.337 66.667 0.00 0.00 35.01 4.18
709 711 2.829458 CCCCTCTCCGTCCTCGTC 60.829 72.222 0.00 0.00 35.01 4.20
788 790 3.044235 TGACACAACATCTTCGCTGAT 57.956 42.857 0.00 0.00 0.00 2.90
800 803 2.822637 CGCTGATAGGTGGGCCCAT 61.823 63.158 31.45 16.64 34.66 4.00
804 807 1.988107 CTGATAGGTGGGCCCATGTAT 59.012 52.381 31.45 26.17 34.66 2.29
817 820 1.134098 CCATGTATGTGGGACCAGGTC 60.134 57.143 11.70 11.70 35.55 3.85
878 881 0.099968 CCGCGAAGGATTCTGACGTA 59.900 55.000 8.23 0.00 44.75 3.57
942 961 0.402504 AACGGCTCATTTACCCCACA 59.597 50.000 0.00 0.00 0.00 4.17
955 974 0.036875 CCCCACAGTCTCCAGAAACC 59.963 60.000 0.00 0.00 0.00 3.27
981 1013 1.663702 CGGCGGTAGAAATAGCCCG 60.664 63.158 0.00 0.00 46.36 6.13
986 1018 1.137479 CGGTAGAAATAGCCCGAACCA 59.863 52.381 0.00 0.00 43.01 3.67
1150 2970 0.997196 GAACGGCAGCTTAACCTACG 59.003 55.000 0.00 0.00 0.00 3.51
1170 2990 2.639926 CGGCGAGACGAATGCGATC 61.640 63.158 0.00 0.00 41.64 3.69
1339 3213 1.002868 AAGCGCATCAGCAGGTTCT 60.003 52.632 11.47 0.00 42.27 3.01
1611 4680 2.251371 CGCGCGATGGACGATCTA 59.749 61.111 28.94 0.00 45.77 1.98
1751 4824 4.916983 AGATCACCGATCTCTCTTCTTG 57.083 45.455 0.56 0.00 45.03 3.02
1841 4915 0.371645 GCTCAAAGATTCGACGCTGG 59.628 55.000 0.00 0.00 0.00 4.85
1852 4926 3.628646 GACGCTGGGGGAACTGCAT 62.629 63.158 0.00 0.00 35.35 3.96
1868 4942 2.263945 TGCATTCCACGTACGTACATG 58.736 47.619 22.34 21.48 0.00 3.21
1872 4946 3.425577 TTCCACGTACGTACATGGATC 57.574 47.619 35.96 5.74 46.45 3.36
1882 4956 4.462133 ACGTACATGGATCTGTAGCTACT 58.538 43.478 23.84 4.56 32.45 2.57
1883 4957 5.618236 ACGTACATGGATCTGTAGCTACTA 58.382 41.667 23.84 12.93 32.45 1.82
1894 4968 7.255660 GGATCTGTAGCTACTATACTGCAACTT 60.256 40.741 23.84 0.00 0.00 2.66
1895 4969 7.028926 TCTGTAGCTACTATACTGCAACTTC 57.971 40.000 23.84 0.00 0.00 3.01
1904 4998 9.209175 CTACTATACTGCAACTTCTTTTTCACT 57.791 33.333 0.00 0.00 0.00 3.41
1905 4999 7.865707 ACTATACTGCAACTTCTTTTTCACTG 58.134 34.615 0.00 0.00 0.00 3.66
1914 5008 5.941788 ACTTCTTTTTCACTGTCCATACCT 58.058 37.500 0.00 0.00 0.00 3.08
1943 5037 7.093465 TGGTAGCTACTACTGCAACTTATTTCT 60.093 37.037 22.74 0.00 37.16 2.52
2023 5127 5.906073 AGGGTTTCACTCAGAATTTTTGTG 58.094 37.500 0.00 0.00 35.83 3.33
2033 5137 7.689400 CACTCAGAATTTTTGTGTTTTCTTTGC 59.311 33.333 0.00 0.00 0.00 3.68
2042 5146 5.694674 TGTGTTTTCTTTGCGACAAAATC 57.305 34.783 6.50 0.00 0.00 2.17
2112 5217 9.528018 AACATAATAAAAGTTATGGCAATTCCG 57.472 29.630 10.36 0.00 43.23 4.30
2139 5244 0.734942 CGAACGACTACCATTGCCGT 60.735 55.000 0.00 0.00 34.74 5.68
2182 5287 2.510874 CTTGTCGTCGCTTCTCTACTG 58.489 52.381 0.00 0.00 0.00 2.74
2184 5289 0.099082 GTCGTCGCTTCTCTACTGGG 59.901 60.000 0.00 0.00 0.00 4.45
2193 5298 3.391665 CTCTACTGGGGCCGGCTTG 62.392 68.421 28.56 15.88 0.00 4.01
2194 5299 3.399181 CTACTGGGGCCGGCTTGA 61.399 66.667 28.56 9.09 0.00 3.02
2214 5319 1.361668 CTTTGTCGATGACAGGCGGG 61.362 60.000 0.00 0.00 43.69 6.13
2217 5322 1.519455 GTCGATGACAGGCGGGAAG 60.519 63.158 0.00 0.00 32.09 3.46
2221 5326 0.179097 GATGACAGGCGGGAAGTCTC 60.179 60.000 0.00 0.00 28.06 3.36
2228 5333 3.617368 CGGGAAGTCTCCGTGGAT 58.383 61.111 0.00 0.00 43.51 3.41
2241 5346 1.610624 CCGTGGATGTGCAACTAAGGT 60.611 52.381 0.00 0.00 38.04 3.50
2249 5354 1.225376 TGCAACTAAGGTCCAACGCG 61.225 55.000 3.53 3.53 0.00 6.01
2251 5356 0.949105 CAACTAAGGTCCAACGCGCT 60.949 55.000 5.73 0.00 0.00 5.92
2256 5361 4.681978 GGTCCAACGCGCTGGAGT 62.682 66.667 30.44 0.00 46.29 3.85
2261 5366 2.899838 AACGCGCTGGAGTTGCAA 60.900 55.556 5.73 0.00 34.73 4.08
2278 5383 0.098728 CAATCGTCGCCATTGAACCC 59.901 55.000 1.42 0.00 33.69 4.11
2279 5384 1.366111 AATCGTCGCCATTGAACCCG 61.366 55.000 0.00 0.00 0.00 5.28
2281 5386 2.736682 CGTCGCCATTGAACCCGTC 61.737 63.158 0.00 0.00 0.00 4.79
2298 5403 3.058155 CCCGTCCATAGATCTGAAGTACG 60.058 52.174 5.18 8.71 0.00 3.67
2302 5407 5.512473 GTCCATAGATCTGAAGTACGTGAC 58.488 45.833 5.18 0.00 0.00 3.67
2305 5410 5.917447 CCATAGATCTGAAGTACGTGACATG 59.083 44.000 5.18 0.00 0.00 3.21
2309 5414 6.634805 AGATCTGAAGTACGTGACATGAAAT 58.365 36.000 0.00 0.00 0.00 2.17
2310 5415 6.754209 AGATCTGAAGTACGTGACATGAAATC 59.246 38.462 0.00 0.00 0.00 2.17
2311 5416 6.025749 TCTGAAGTACGTGACATGAAATCT 57.974 37.500 0.00 0.00 0.00 2.40
2312 5417 6.093404 TCTGAAGTACGTGACATGAAATCTC 58.907 40.000 0.00 0.00 0.00 2.75
2313 5418 5.778862 TGAAGTACGTGACATGAAATCTCA 58.221 37.500 0.00 0.00 35.56 3.27
2314 5419 5.633601 TGAAGTACGTGACATGAAATCTCAC 59.366 40.000 0.00 1.05 33.30 3.51
2315 5420 5.392767 AGTACGTGACATGAAATCTCACT 57.607 39.130 0.00 0.00 33.30 3.41
2316 5421 6.510879 AGTACGTGACATGAAATCTCACTA 57.489 37.500 0.00 0.00 33.30 2.74
2317 5422 6.556212 AGTACGTGACATGAAATCTCACTAG 58.444 40.000 0.00 0.00 33.30 2.57
2318 5423 5.392767 ACGTGACATGAAATCTCACTAGT 57.607 39.130 0.00 0.00 33.30 2.57
2319 5424 6.510879 ACGTGACATGAAATCTCACTAGTA 57.489 37.500 0.00 0.00 33.30 1.82
2320 5425 6.556212 ACGTGACATGAAATCTCACTAGTAG 58.444 40.000 0.00 0.00 33.30 2.57
2321 5426 6.374613 ACGTGACATGAAATCTCACTAGTAGA 59.625 38.462 3.59 0.00 33.30 2.59
2322 5427 7.094334 ACGTGACATGAAATCTCACTAGTAGAA 60.094 37.037 3.59 0.00 33.30 2.10
2323 5428 7.755373 CGTGACATGAAATCTCACTAGTAGAAA 59.245 37.037 3.59 0.00 33.30 2.52
2324 5429 9.424319 GTGACATGAAATCTCACTAGTAGAAAA 57.576 33.333 3.59 0.00 33.30 2.29
2327 5432 9.388506 ACATGAAATCTCACTAGTAGAAAATGG 57.611 33.333 3.59 0.00 33.30 3.16
2328 5433 8.834465 CATGAAATCTCACTAGTAGAAAATGGG 58.166 37.037 3.59 0.00 33.30 4.00
2329 5434 7.918076 TGAAATCTCACTAGTAGAAAATGGGT 58.082 34.615 3.59 0.00 0.00 4.51
2330 5435 8.041323 TGAAATCTCACTAGTAGAAAATGGGTC 58.959 37.037 3.59 0.00 0.00 4.46
2331 5436 7.496346 AATCTCACTAGTAGAAAATGGGTCA 57.504 36.000 3.59 0.00 0.00 4.02
2332 5437 7.682787 ATCTCACTAGTAGAAAATGGGTCAT 57.317 36.000 3.59 0.00 0.00 3.06
2333 5438 7.496346 TCTCACTAGTAGAAAATGGGTCATT 57.504 36.000 3.59 0.00 35.39 2.57
2334 5439 8.603898 TCTCACTAGTAGAAAATGGGTCATTA 57.396 34.615 3.59 0.00 32.43 1.90
2335 5440 8.696374 TCTCACTAGTAGAAAATGGGTCATTAG 58.304 37.037 3.59 0.00 32.43 1.73
2336 5441 8.375493 TCACTAGTAGAAAATGGGTCATTAGT 57.625 34.615 3.59 0.00 32.43 2.24
2337 5442 8.475639 TCACTAGTAGAAAATGGGTCATTAGTC 58.524 37.037 3.59 0.00 32.43 2.59
2338 5443 7.711339 CACTAGTAGAAAATGGGTCATTAGTCC 59.289 40.741 3.59 0.00 32.43 3.85
2339 5444 6.002653 AGTAGAAAATGGGTCATTAGTCCC 57.997 41.667 0.00 0.00 42.71 4.46
2340 5445 3.886123 AGAAAATGGGTCATTAGTCCCG 58.114 45.455 0.00 0.00 45.01 5.14
2341 5446 2.729028 AAATGGGTCATTAGTCCCGG 57.271 50.000 0.00 0.00 45.01 5.73
2342 5447 1.591768 AATGGGTCATTAGTCCCGGT 58.408 50.000 0.00 0.00 45.01 5.28
2343 5448 1.591768 ATGGGTCATTAGTCCCGGTT 58.408 50.000 0.00 0.00 45.01 4.44
2344 5449 0.906775 TGGGTCATTAGTCCCGGTTC 59.093 55.000 0.00 0.00 45.01 3.62
2345 5450 0.179702 GGGTCATTAGTCCCGGTTCC 59.820 60.000 0.00 0.00 33.39 3.62
2346 5451 0.906775 GGTCATTAGTCCCGGTTCCA 59.093 55.000 0.00 0.00 0.00 3.53
2347 5452 1.134491 GGTCATTAGTCCCGGTTCCAG 60.134 57.143 0.00 0.00 0.00 3.86
2348 5453 1.829222 GTCATTAGTCCCGGTTCCAGA 59.171 52.381 0.00 0.00 0.00 3.86
2349 5454 2.108168 TCATTAGTCCCGGTTCCAGAG 58.892 52.381 0.00 0.00 0.00 3.35
2350 5455 1.139058 CATTAGTCCCGGTTCCAGAGG 59.861 57.143 0.00 0.00 0.00 3.69
2351 5456 0.616679 TTAGTCCCGGTTCCAGAGGG 60.617 60.000 0.00 0.00 46.40 4.30
2352 5457 4.097361 GTCCCGGTTCCAGAGGGC 62.097 72.222 0.00 0.00 44.70 5.19
2355 5460 3.330720 CCGGTTCCAGAGGGCCTT 61.331 66.667 7.89 0.00 0.00 4.35
2356 5461 2.757077 CGGTTCCAGAGGGCCTTT 59.243 61.111 7.89 0.00 0.00 3.11
2357 5462 1.559065 CCGGTTCCAGAGGGCCTTTA 61.559 60.000 7.89 0.00 0.00 1.85
2358 5463 0.107654 CGGTTCCAGAGGGCCTTTAG 60.108 60.000 7.89 0.00 0.00 1.85
2359 5464 0.992695 GGTTCCAGAGGGCCTTTAGT 59.007 55.000 7.89 0.00 0.00 2.24
2360 5465 1.065345 GGTTCCAGAGGGCCTTTAGTC 60.065 57.143 7.89 0.00 0.00 2.59
2361 5466 1.065345 GTTCCAGAGGGCCTTTAGTCC 60.065 57.143 7.89 0.00 0.00 3.85
2362 5467 0.620700 TCCAGAGGGCCTTTAGTCCC 60.621 60.000 7.89 0.00 42.94 4.46
2363 5468 0.914417 CCAGAGGGCCTTTAGTCCCA 60.914 60.000 7.89 0.00 45.07 4.37
2364 5469 0.991920 CAGAGGGCCTTTAGTCCCAA 59.008 55.000 7.89 0.00 45.07 4.12
2365 5470 1.566231 CAGAGGGCCTTTAGTCCCAAT 59.434 52.381 7.89 0.00 45.07 3.16
2366 5471 2.024941 CAGAGGGCCTTTAGTCCCAATT 60.025 50.000 7.89 0.00 45.07 2.32
2367 5472 2.242452 AGAGGGCCTTTAGTCCCAATTC 59.758 50.000 7.89 0.00 45.07 2.17
2368 5473 2.242452 GAGGGCCTTTAGTCCCAATTCT 59.758 50.000 7.89 0.00 45.07 2.40
2369 5474 2.024941 AGGGCCTTTAGTCCCAATTCTG 60.025 50.000 0.00 0.00 45.07 3.02
2370 5475 2.025321 GGGCCTTTAGTCCCAATTCTGA 60.025 50.000 0.84 0.00 42.18 3.27
2371 5476 3.563479 GGGCCTTTAGTCCCAATTCTGAA 60.563 47.826 0.84 0.00 42.18 3.02
2372 5477 4.086457 GGCCTTTAGTCCCAATTCTGAAA 58.914 43.478 0.00 0.00 0.00 2.69
2373 5478 4.082190 GGCCTTTAGTCCCAATTCTGAAAC 60.082 45.833 0.00 0.00 0.00 2.78
2374 5479 4.082190 GCCTTTAGTCCCAATTCTGAAACC 60.082 45.833 0.00 0.00 0.00 3.27
2375 5480 4.156008 CCTTTAGTCCCAATTCTGAAACCG 59.844 45.833 0.00 0.00 0.00 4.44
2376 5481 2.200373 AGTCCCAATTCTGAAACCGG 57.800 50.000 0.00 0.00 0.00 5.28
2377 5482 1.173913 GTCCCAATTCTGAAACCGGG 58.826 55.000 6.32 13.27 32.59 5.73
2378 5483 1.068948 TCCCAATTCTGAAACCGGGA 58.931 50.000 16.53 16.53 36.36 5.14
2379 5484 1.173913 CCCAATTCTGAAACCGGGAC 58.826 55.000 6.32 0.00 32.93 4.46
2380 5485 1.271926 CCCAATTCTGAAACCGGGACT 60.272 52.381 6.32 0.00 32.93 3.85
2381 5486 2.026636 CCCAATTCTGAAACCGGGACTA 60.027 50.000 6.32 0.00 32.93 2.59
2382 5487 3.560453 CCCAATTCTGAAACCGGGACTAA 60.560 47.826 6.32 0.00 32.93 2.24
2383 5488 4.076394 CCAATTCTGAAACCGGGACTAAA 58.924 43.478 6.32 0.00 0.00 1.85
2384 5489 4.156008 CCAATTCTGAAACCGGGACTAAAG 59.844 45.833 6.32 0.00 0.00 1.85
2385 5490 3.412237 TTCTGAAACCGGGACTAAAGG 57.588 47.619 6.32 0.00 0.00 3.11
2386 5491 1.626825 TCTGAAACCGGGACTAAAGGG 59.373 52.381 6.32 0.00 0.00 3.95
2387 5492 1.350019 CTGAAACCGGGACTAAAGGGT 59.650 52.381 6.32 0.00 0.00 4.34
2388 5493 1.348696 TGAAACCGGGACTAAAGGGTC 59.651 52.381 6.32 0.00 35.66 4.46
2389 5494 0.322648 AAACCGGGACTAAAGGGTCG 59.677 55.000 6.32 0.00 37.12 4.79
2390 5495 0.542702 AACCGGGACTAAAGGGTCGA 60.543 55.000 6.32 0.00 37.12 4.20
2391 5496 0.969409 ACCGGGACTAAAGGGTCGAG 60.969 60.000 6.32 0.00 37.12 4.04
2392 5497 0.682209 CCGGGACTAAAGGGTCGAGA 60.682 60.000 0.00 0.00 37.12 4.04
2393 5498 0.455005 CGGGACTAAAGGGTCGAGAC 59.545 60.000 0.00 0.00 37.12 3.36
2394 5499 1.849977 GGGACTAAAGGGTCGAGACT 58.150 55.000 3.09 0.00 37.12 3.24
2395 5500 2.681976 CGGGACTAAAGGGTCGAGACTA 60.682 54.545 3.09 0.00 37.12 2.59
2396 5501 3.359950 GGGACTAAAGGGTCGAGACTAA 58.640 50.000 3.09 0.00 37.12 2.24
2397 5502 3.766051 GGGACTAAAGGGTCGAGACTAAA 59.234 47.826 3.09 0.00 37.12 1.85
2398 5503 4.142204 GGGACTAAAGGGTCGAGACTAAAG 60.142 50.000 3.09 0.00 37.12 1.85
2399 5504 4.422840 GACTAAAGGGTCGAGACTAAAGC 58.577 47.826 3.09 0.00 0.00 3.51
2400 5505 2.764439 AAAGGGTCGAGACTAAAGCC 57.236 50.000 3.09 0.00 0.00 4.35
2401 5506 0.903236 AAGGGTCGAGACTAAAGCCC 59.097 55.000 3.09 0.00 36.46 5.19
2402 5507 0.252103 AGGGTCGAGACTAAAGCCCA 60.252 55.000 6.28 0.00 38.56 5.36
2403 5508 0.175989 GGGTCGAGACTAAAGCCCAG 59.824 60.000 3.09 0.00 36.25 4.45
2404 5509 1.183549 GGTCGAGACTAAAGCCCAGA 58.816 55.000 3.09 0.00 0.00 3.86
2405 5510 1.135053 GGTCGAGACTAAAGCCCAGAC 60.135 57.143 3.09 0.00 0.00 3.51
2406 5511 1.135053 GTCGAGACTAAAGCCCAGACC 60.135 57.143 0.00 0.00 0.00 3.85
2407 5512 1.187087 CGAGACTAAAGCCCAGACCT 58.813 55.000 0.00 0.00 0.00 3.85
2408 5513 1.550976 CGAGACTAAAGCCCAGACCTT 59.449 52.381 0.00 0.00 0.00 3.50
2409 5514 2.028020 CGAGACTAAAGCCCAGACCTTT 60.028 50.000 0.00 0.00 36.55 3.11
2410 5515 3.194968 CGAGACTAAAGCCCAGACCTTTA 59.805 47.826 0.00 0.00 34.58 1.85
2422 5527 2.180432 GACCTTTAGTCCCGTTTGCT 57.820 50.000 0.00 0.00 39.84 3.91
2423 5528 2.501261 GACCTTTAGTCCCGTTTGCTT 58.499 47.619 0.00 0.00 39.84 3.91
2424 5529 3.667360 GACCTTTAGTCCCGTTTGCTTA 58.333 45.455 0.00 0.00 39.84 3.09
2425 5530 4.259356 GACCTTTAGTCCCGTTTGCTTAT 58.741 43.478 0.00 0.00 39.84 1.73
2426 5531 4.007659 ACCTTTAGTCCCGTTTGCTTATG 58.992 43.478 0.00 0.00 0.00 1.90
2427 5532 4.258543 CCTTTAGTCCCGTTTGCTTATGA 58.741 43.478 0.00 0.00 0.00 2.15
2428 5533 4.698304 CCTTTAGTCCCGTTTGCTTATGAA 59.302 41.667 0.00 0.00 0.00 2.57
2429 5534 5.163754 CCTTTAGTCCCGTTTGCTTATGAAG 60.164 44.000 0.00 0.00 0.00 3.02
2441 5546 2.872858 GCTTATGAAGCGGGACTAAAGG 59.127 50.000 0.00 0.00 45.74 3.11
2442 5547 3.431766 GCTTATGAAGCGGGACTAAAGGA 60.432 47.826 0.00 0.00 45.74 3.36
2443 5548 2.990066 ATGAAGCGGGACTAAAGGAG 57.010 50.000 0.00 0.00 0.00 3.69
2444 5549 0.249398 TGAAGCGGGACTAAAGGAGC 59.751 55.000 0.00 0.00 0.00 4.70
2445 5550 0.537653 GAAGCGGGACTAAAGGAGCT 59.462 55.000 0.00 0.00 36.40 4.09
2446 5551 0.537653 AAGCGGGACTAAAGGAGCTC 59.462 55.000 4.71 4.71 33.42 4.09
2447 5552 1.144276 GCGGGACTAAAGGAGCTCC 59.856 63.158 26.22 26.22 0.00 4.70
2448 5553 1.614241 GCGGGACTAAAGGAGCTCCA 61.614 60.000 33.90 13.39 38.89 3.86
2449 5554 0.175989 CGGGACTAAAGGAGCTCCAC 59.824 60.000 33.90 16.38 38.89 4.02
2450 5555 0.175989 GGGACTAAAGGAGCTCCACG 59.824 60.000 33.90 19.89 38.89 4.94
2451 5556 0.896226 GGACTAAAGGAGCTCCACGT 59.104 55.000 33.90 22.77 38.89 4.49
2452 5557 1.404315 GGACTAAAGGAGCTCCACGTG 60.404 57.143 33.90 21.80 38.89 4.49
2453 5558 0.608640 ACTAAAGGAGCTCCACGTGG 59.391 55.000 33.90 29.26 38.89 4.94
2454 5559 0.741221 CTAAAGGAGCTCCACGTGGC 60.741 60.000 33.90 18.90 38.89 5.01
2455 5560 2.180159 TAAAGGAGCTCCACGTGGCC 62.180 60.000 33.90 23.65 38.89 5.36
2469 5574 4.828925 GGCCGCTGTCTGGAGCTC 62.829 72.222 4.71 4.71 36.77 4.09
2470 5575 4.828925 GCCGCTGTCTGGAGCTCC 62.829 72.222 26.78 26.78 36.77 4.70
2471 5576 3.385384 CCGCTGTCTGGAGCTCCA 61.385 66.667 33.04 33.04 45.30 3.86
2472 5577 2.125753 CGCTGTCTGGAGCTCCAC 60.126 66.667 32.00 22.67 42.01 4.02
2473 5578 2.267324 GCTGTCTGGAGCTCCACC 59.733 66.667 32.00 23.53 42.01 4.61
2474 5579 2.289532 GCTGTCTGGAGCTCCACCT 61.290 63.158 32.00 0.00 42.01 4.00
2475 5580 1.835927 GCTGTCTGGAGCTCCACCTT 61.836 60.000 32.00 0.00 42.01 3.50
2476 5581 0.689623 CTGTCTGGAGCTCCACCTTT 59.310 55.000 32.00 0.00 42.01 3.11
2477 5582 1.902508 CTGTCTGGAGCTCCACCTTTA 59.097 52.381 32.00 14.59 42.01 1.85
2478 5583 1.902508 TGTCTGGAGCTCCACCTTTAG 59.097 52.381 32.00 20.25 42.01 1.85
2479 5584 1.903183 GTCTGGAGCTCCACCTTTAGT 59.097 52.381 32.00 0.00 42.01 2.24
2480 5585 2.093921 GTCTGGAGCTCCACCTTTAGTC 60.094 54.545 32.00 14.37 42.01 2.59
2481 5586 1.208293 CTGGAGCTCCACCTTTAGTCC 59.792 57.143 32.00 1.86 42.01 3.85
2482 5587 0.542333 GGAGCTCCACCTTTAGTCCC 59.458 60.000 28.43 0.00 35.64 4.46
2483 5588 0.175989 GAGCTCCACCTTTAGTCCCG 59.824 60.000 0.87 0.00 0.00 5.14
2484 5589 1.221021 GCTCCACCTTTAGTCCCGG 59.779 63.158 0.00 0.00 0.00 5.73
2485 5590 1.551019 GCTCCACCTTTAGTCCCGGT 61.551 60.000 0.00 0.00 0.00 5.28
2486 5591 0.981943 CTCCACCTTTAGTCCCGGTT 59.018 55.000 0.00 0.00 0.00 4.44
2487 5592 0.688487 TCCACCTTTAGTCCCGGTTG 59.312 55.000 0.00 0.00 0.00 3.77
2488 5593 0.322187 CCACCTTTAGTCCCGGTTGG 60.322 60.000 0.00 0.00 0.00 3.77
2489 5594 0.399075 CACCTTTAGTCCCGGTTGGT 59.601 55.000 0.00 0.00 34.77 3.67
2490 5595 1.142936 ACCTTTAGTCCCGGTTGGTT 58.857 50.000 0.00 0.00 34.77 3.67
2491 5596 1.202842 ACCTTTAGTCCCGGTTGGTTG 60.203 52.381 0.00 0.00 34.77 3.77
2492 5597 1.530323 CTTTAGTCCCGGTTGGTTGG 58.470 55.000 0.00 0.00 34.77 3.77
2493 5598 0.845337 TTTAGTCCCGGTTGGTTGGT 59.155 50.000 0.00 0.00 34.77 3.67
2494 5599 0.845337 TTAGTCCCGGTTGGTTGGTT 59.155 50.000 0.00 0.00 34.77 3.67
2495 5600 0.108963 TAGTCCCGGTTGGTTGGTTG 59.891 55.000 0.00 0.00 34.77 3.77
2496 5601 2.196229 TCCCGGTTGGTTGGTTGG 59.804 61.111 0.00 0.00 34.77 3.77
2497 5602 2.123640 CCCGGTTGGTTGGTTGGT 60.124 61.111 0.00 0.00 0.00 3.67
2498 5603 1.150992 CCCGGTTGGTTGGTTGGTA 59.849 57.895 0.00 0.00 0.00 3.25
2499 5604 0.467659 CCCGGTTGGTTGGTTGGTAA 60.468 55.000 0.00 0.00 0.00 2.85
2500 5605 0.669619 CCGGTTGGTTGGTTGGTAAC 59.330 55.000 0.00 0.00 0.00 2.50
2512 5617 4.384599 GGTAACACCAACCGGGAC 57.615 61.111 6.32 0.00 38.42 4.46
2513 5618 1.756665 GGTAACACCAACCGGGACT 59.243 57.895 6.32 0.00 38.42 3.85
2514 5619 0.975887 GGTAACACCAACCGGGACTA 59.024 55.000 6.32 0.00 38.42 2.59
2515 5620 1.347378 GGTAACACCAACCGGGACTAA 59.653 52.381 6.32 0.00 38.42 2.24
2516 5621 2.224499 GGTAACACCAACCGGGACTAAA 60.224 50.000 6.32 0.00 38.42 1.85
2517 5622 2.732844 AACACCAACCGGGACTAAAA 57.267 45.000 6.32 0.00 41.15 1.52
2518 5623 2.732844 ACACCAACCGGGACTAAAAA 57.267 45.000 6.32 0.00 41.15 1.94
2596 5701 9.527157 TTTGACAATTTAATCTCTAATCACCCA 57.473 29.630 0.00 0.00 0.00 4.51
2597 5702 8.506168 TGACAATTTAATCTCTAATCACCCAC 57.494 34.615 0.00 0.00 0.00 4.61
2598 5703 8.328758 TGACAATTTAATCTCTAATCACCCACT 58.671 33.333 0.00 0.00 0.00 4.00
2599 5704 8.738645 ACAATTTAATCTCTAATCACCCACTC 57.261 34.615 0.00 0.00 0.00 3.51
2600 5705 8.552296 ACAATTTAATCTCTAATCACCCACTCT 58.448 33.333 0.00 0.00 0.00 3.24
2605 5710 7.921041 AATCTCTAATCACCCACTCTAATCA 57.079 36.000 0.00 0.00 0.00 2.57
2606 5711 6.716934 TCTCTAATCACCCACTCTAATCAC 57.283 41.667 0.00 0.00 0.00 3.06
2607 5712 5.598830 TCTCTAATCACCCACTCTAATCACC 59.401 44.000 0.00 0.00 0.00 4.02
2608 5713 3.933861 AATCACCCACTCTAATCACCC 57.066 47.619 0.00 0.00 0.00 4.61
2609 5714 1.580059 TCACCCACTCTAATCACCCC 58.420 55.000 0.00 0.00 0.00 4.95
2610 5715 1.080498 TCACCCACTCTAATCACCCCT 59.920 52.381 0.00 0.00 0.00 4.79
2611 5716 1.486726 CACCCACTCTAATCACCCCTC 59.513 57.143 0.00 0.00 0.00 4.30
2612 5717 1.080498 ACCCACTCTAATCACCCCTCA 59.920 52.381 0.00 0.00 0.00 3.86
2613 5718 2.293856 ACCCACTCTAATCACCCCTCAT 60.294 50.000 0.00 0.00 0.00 2.90
2614 5719 2.370189 CCCACTCTAATCACCCCTCATC 59.630 54.545 0.00 0.00 0.00 2.92
2615 5720 3.041211 CCACTCTAATCACCCCTCATCA 58.959 50.000 0.00 0.00 0.00 3.07
2616 5721 3.181461 CCACTCTAATCACCCCTCATCAC 60.181 52.174 0.00 0.00 0.00 3.06
2617 5722 3.041946 ACTCTAATCACCCCTCATCACC 58.958 50.000 0.00 0.00 0.00 4.02
2618 5723 2.036475 CTCTAATCACCCCTCATCACCG 59.964 54.545 0.00 0.00 0.00 4.94
2619 5724 0.468226 TAATCACCCCTCATCACCGC 59.532 55.000 0.00 0.00 0.00 5.68
2620 5725 2.270874 AATCACCCCTCATCACCGCC 62.271 60.000 0.00 0.00 0.00 6.13
2621 5726 3.402681 CACCCCTCATCACCGCCT 61.403 66.667 0.00 0.00 0.00 5.52
2622 5727 2.610859 ACCCCTCATCACCGCCTT 60.611 61.111 0.00 0.00 0.00 4.35
2623 5728 1.306654 ACCCCTCATCACCGCCTTA 60.307 57.895 0.00 0.00 0.00 2.69
2624 5729 1.338136 ACCCCTCATCACCGCCTTAG 61.338 60.000 0.00 0.00 0.00 2.18
2625 5730 1.227674 CCCTCATCACCGCCTTAGC 60.228 63.158 0.00 0.00 0.00 3.09
2626 5731 1.227674 CCTCATCACCGCCTTAGCC 60.228 63.158 0.00 0.00 34.57 3.93
2627 5732 1.592669 CTCATCACCGCCTTAGCCG 60.593 63.158 0.00 0.00 34.57 5.52
2628 5733 3.272334 CATCACCGCCTTAGCCGC 61.272 66.667 0.00 0.00 34.57 6.53
2629 5734 3.470888 ATCACCGCCTTAGCCGCT 61.471 61.111 0.00 0.00 34.57 5.52
2630 5735 3.447025 ATCACCGCCTTAGCCGCTC 62.447 63.158 0.00 0.00 34.57 5.03
2631 5736 4.451150 CACCGCCTTAGCCGCTCA 62.451 66.667 0.00 0.00 34.57 4.26
2632 5737 3.702048 ACCGCCTTAGCCGCTCAA 61.702 61.111 0.00 0.00 34.57 3.02
2633 5738 2.435938 CCGCCTTAGCCGCTCAAA 60.436 61.111 0.00 0.00 34.57 2.69
2634 5739 2.750888 CCGCCTTAGCCGCTCAAAC 61.751 63.158 0.00 0.00 34.57 2.93
2635 5740 2.750888 CGCCTTAGCCGCTCAAACC 61.751 63.158 0.00 0.00 34.57 3.27
2636 5741 2.750888 GCCTTAGCCGCTCAAACCG 61.751 63.158 0.00 0.00 0.00 4.44
2638 5743 2.046700 TTAGCCGCTCAAACCGGG 60.047 61.111 6.32 0.00 45.66 5.73
2639 5744 2.515996 CTTAGCCGCTCAAACCGGGA 62.516 60.000 6.32 0.00 45.66 5.14
2640 5745 2.791501 TTAGCCGCTCAAACCGGGAC 62.792 60.000 6.32 0.00 45.66 4.46
2659 5764 2.906354 ACGAATGCTCACATTAGTCCC 58.094 47.619 0.00 0.00 45.50 4.46
2660 5765 1.860950 CGAATGCTCACATTAGTCCCG 59.139 52.381 0.00 0.00 46.59 5.14
2661 5766 2.213499 GAATGCTCACATTAGTCCCGG 58.787 52.381 0.00 0.00 46.59 5.73
2662 5767 1.204146 ATGCTCACATTAGTCCCGGT 58.796 50.000 0.00 0.00 30.07 5.28
2663 5768 0.981183 TGCTCACATTAGTCCCGGTT 59.019 50.000 0.00 0.00 0.00 4.44
2664 5769 1.066430 TGCTCACATTAGTCCCGGTTC 60.066 52.381 0.00 0.00 0.00 3.62
2665 5770 1.922570 CTCACATTAGTCCCGGTTCG 58.077 55.000 0.00 0.00 0.00 3.95
2666 5771 1.203994 CTCACATTAGTCCCGGTTCGT 59.796 52.381 0.00 0.00 0.00 3.85
2667 5772 1.067425 TCACATTAGTCCCGGTTCGTG 60.067 52.381 0.00 0.00 0.00 4.35
2668 5773 1.067425 CACATTAGTCCCGGTTCGTGA 60.067 52.381 0.00 0.00 0.00 4.35
2669 5774 1.829222 ACATTAGTCCCGGTTCGTGAT 59.171 47.619 0.00 0.00 0.00 3.06
2670 5775 2.201732 CATTAGTCCCGGTTCGTGATG 58.798 52.381 0.00 0.00 0.00 3.07
2671 5776 0.108520 TTAGTCCCGGTTCGTGATGC 60.109 55.000 0.00 0.00 0.00 3.91
2672 5777 1.252215 TAGTCCCGGTTCGTGATGCA 61.252 55.000 0.00 0.00 0.00 3.96
2673 5778 1.669760 GTCCCGGTTCGTGATGCAA 60.670 57.895 0.00 0.00 0.00 4.08
2674 5779 1.669760 TCCCGGTTCGTGATGCAAC 60.670 57.895 0.00 0.00 0.00 4.17
2675 5780 2.686816 CCCGGTTCGTGATGCAACC 61.687 63.158 0.00 0.00 39.04 3.77
2677 5782 2.867472 GGTTCGTGATGCAACCGG 59.133 61.111 0.00 0.00 33.01 5.28
2678 5783 2.686816 GGTTCGTGATGCAACCGGG 61.687 63.158 6.32 0.00 33.01 5.73
2679 5784 1.669760 GTTCGTGATGCAACCGGGA 60.670 57.895 6.32 0.00 0.00 5.14
2680 5785 1.669760 TTCGTGATGCAACCGGGAC 60.670 57.895 6.32 0.00 0.00 4.46
2681 5786 2.047274 CGTGATGCAACCGGGACT 60.047 61.111 6.32 0.00 0.00 3.85
2682 5787 1.216977 CGTGATGCAACCGGGACTA 59.783 57.895 6.32 0.00 0.00 2.59
2683 5788 0.390603 CGTGATGCAACCGGGACTAA 60.391 55.000 6.32 0.00 0.00 2.24
2684 5789 1.742411 CGTGATGCAACCGGGACTAAT 60.742 52.381 6.32 0.00 0.00 1.73
2685 5790 1.670811 GTGATGCAACCGGGACTAATG 59.329 52.381 6.32 0.00 0.00 1.90
2686 5791 1.280710 TGATGCAACCGGGACTAATGT 59.719 47.619 6.32 0.00 0.00 2.71
2687 5792 1.670811 GATGCAACCGGGACTAATGTG 59.329 52.381 6.32 0.00 0.00 3.21
2688 5793 0.398696 TGCAACCGGGACTAATGTGT 59.601 50.000 6.32 0.00 0.00 3.72
2689 5794 1.624312 TGCAACCGGGACTAATGTGTA 59.376 47.619 6.32 0.00 0.00 2.90
2690 5795 2.004733 GCAACCGGGACTAATGTGTAC 58.995 52.381 6.32 0.00 0.00 2.90
2691 5796 2.613474 GCAACCGGGACTAATGTGTACA 60.613 50.000 6.32 0.00 0.00 2.90
2692 5797 3.869065 CAACCGGGACTAATGTGTACAT 58.131 45.455 6.32 0.00 38.41 2.29
2694 5799 3.869065 ACCGGGACTAATGTGTACATTG 58.131 45.455 17.94 11.29 45.34 2.82
2695 5800 3.516300 ACCGGGACTAATGTGTACATTGA 59.484 43.478 17.94 4.35 45.34 2.57
2696 5801 4.119862 CCGGGACTAATGTGTACATTGAG 58.880 47.826 17.94 13.41 45.34 3.02
2697 5802 3.555956 CGGGACTAATGTGTACATTGAGC 59.444 47.826 17.94 8.19 45.34 4.26
2698 5803 4.680708 CGGGACTAATGTGTACATTGAGCT 60.681 45.833 17.94 0.00 45.34 4.09
2699 5804 4.572389 GGGACTAATGTGTACATTGAGCTG 59.428 45.833 17.94 7.40 45.34 4.24
2700 5805 5.178797 GGACTAATGTGTACATTGAGCTGT 58.821 41.667 17.94 9.82 45.34 4.40
2701 5806 5.063944 GGACTAATGTGTACATTGAGCTGTG 59.936 44.000 17.94 0.00 45.34 3.66
2702 5807 5.793817 ACTAATGTGTACATTGAGCTGTGA 58.206 37.500 17.94 0.00 45.34 3.58
2703 5808 5.639506 ACTAATGTGTACATTGAGCTGTGAC 59.360 40.000 17.94 0.00 45.34 3.67
2704 5809 2.766313 TGTGTACATTGAGCTGTGACC 58.234 47.619 0.00 0.00 0.00 4.02
2705 5810 2.103941 TGTGTACATTGAGCTGTGACCA 59.896 45.455 0.00 0.00 0.00 4.02
2706 5811 3.138304 GTGTACATTGAGCTGTGACCAA 58.862 45.455 0.00 0.00 0.00 3.67
2707 5812 3.563808 GTGTACATTGAGCTGTGACCAAA 59.436 43.478 0.00 0.00 0.00 3.28
2708 5813 3.814842 TGTACATTGAGCTGTGACCAAAG 59.185 43.478 0.00 0.00 0.00 2.77
2709 5814 1.610522 ACATTGAGCTGTGACCAAAGC 59.389 47.619 4.04 4.04 39.82 3.51
2710 5815 1.068055 CATTGAGCTGTGACCAAAGCC 60.068 52.381 8.47 1.96 40.42 4.35
2711 5816 0.823356 TTGAGCTGTGACCAAAGCCC 60.823 55.000 8.47 0.00 40.42 5.19
2712 5817 1.073897 GAGCTGTGACCAAAGCCCT 59.926 57.895 8.47 0.00 40.42 5.19
2713 5818 1.228367 AGCTGTGACCAAAGCCCTG 60.228 57.895 8.47 0.00 40.42 4.45
2714 5819 1.529244 GCTGTGACCAAAGCCCTGT 60.529 57.895 0.71 0.00 33.12 4.00
2715 5820 1.109323 GCTGTGACCAAAGCCCTGTT 61.109 55.000 0.71 0.00 33.12 3.16
2716 5821 1.402787 CTGTGACCAAAGCCCTGTTT 58.597 50.000 0.00 0.00 0.00 2.83
2717 5822 1.756538 CTGTGACCAAAGCCCTGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
2718 5823 2.168313 CTGTGACCAAAGCCCTGTTTTT 59.832 45.455 0.00 0.00 0.00 1.94
2758 5863 4.866508 TGACGAGAAACACTAACCTCAT 57.133 40.909 0.00 0.00 0.00 2.90
2759 5864 4.556233 TGACGAGAAACACTAACCTCATG 58.444 43.478 0.00 0.00 0.00 3.07
2775 5880 3.019003 ATGGTCCCAAGAGACGGCG 62.019 63.158 4.80 4.80 37.66 6.46
2776 5881 4.452733 GGTCCCAAGAGACGGCGG 62.453 72.222 13.24 0.00 37.66 6.13
2785 5890 3.600843 AGACGGCGGGAGTCTAAC 58.399 61.111 13.24 0.00 46.06 2.34
2789 5894 2.110967 CGGCGGGAGTCTAACTCGA 61.111 63.158 0.00 0.00 45.96 4.04
2790 5895 1.728672 GGCGGGAGTCTAACTCGAG 59.271 63.158 11.84 11.84 45.96 4.04
2791 5896 1.064458 GCGGGAGTCTAACTCGAGC 59.936 63.158 13.61 8.79 45.96 5.03
2793 5898 1.728672 GGGAGTCTAACTCGAGCCG 59.271 63.158 13.61 0.68 45.96 5.52
2794 5899 1.031029 GGGAGTCTAACTCGAGCCGT 61.031 60.000 13.61 0.14 45.96 5.68
2795 5900 1.661341 GGAGTCTAACTCGAGCCGTA 58.339 55.000 13.61 1.49 45.96 4.02
2796 5901 1.330213 GGAGTCTAACTCGAGCCGTAC 59.670 57.143 13.61 6.41 45.96 3.67
2797 5902 1.330213 GAGTCTAACTCGAGCCGTACC 59.670 57.143 13.61 0.00 35.28 3.34
2799 5904 1.742268 GTCTAACTCGAGCCGTACCTT 59.258 52.381 13.61 0.00 0.00 3.50
2800 5905 2.012673 TCTAACTCGAGCCGTACCTTC 58.987 52.381 13.61 0.00 0.00 3.46
2801 5906 1.741706 CTAACTCGAGCCGTACCTTCA 59.258 52.381 13.61 0.00 0.00 3.02
2813 6009 4.698780 GCCGTACCTTCAAGGACTAAAAAT 59.301 41.667 11.59 0.00 37.67 1.82
2835 6031 4.210331 TCCTAACCTAAACTACTAGCCGG 58.790 47.826 0.00 0.00 0.00 6.13
2888 6084 4.785767 TCACTGAAGTGGCAGCAG 57.214 55.556 10.45 9.59 45.65 4.24
2908 6105 2.107141 GAGAGGCGAATCCACGGG 59.893 66.667 0.00 0.00 37.29 5.28
2912 6109 4.162690 GGCGAATCCACGGGCTCT 62.163 66.667 0.00 0.00 34.01 4.09
2931 6128 1.001406 CTTCGGTGAAGCTTGGAGAGT 59.999 52.381 2.10 0.00 32.78 3.24
2935 6132 2.231478 CGGTGAAGCTTGGAGAGTAGAA 59.769 50.000 2.10 0.00 0.00 2.10
2984 6181 9.769093 ACGTTATAAGTCTCATTTTTATTGTGC 57.231 29.630 0.00 0.00 0.00 4.57
2990 6187 7.472334 AGTCTCATTTTTATTGTGCTCCATT 57.528 32.000 0.00 0.00 0.00 3.16
3005 6202 6.147492 TGTGCTCCATTGCATGTTTAAATTTC 59.853 34.615 0.00 0.00 45.23 2.17
3009 6206 6.686630 TCCATTGCATGTTTAAATTTCGAGT 58.313 32.000 0.00 0.00 0.00 4.18
3015 6212 8.446489 TGCATGTTTAAATTTCGAGTTACATG 57.554 30.769 15.52 15.52 42.59 3.21
3017 6214 8.446489 CATGTTTAAATTTCGAGTTACATGCA 57.554 30.769 0.00 0.00 36.39 3.96
3018 6215 8.910666 CATGTTTAAATTTCGAGTTACATGCAA 58.089 29.630 0.00 0.00 36.39 4.08
3019 6216 8.276060 TGTTTAAATTTCGAGTTACATGCAAC 57.724 30.769 0.10 0.10 0.00 4.17
3020 6217 7.380065 TGTTTAAATTTCGAGTTACATGCAACC 59.620 33.333 5.15 0.00 0.00 3.77
3021 6218 5.446143 AAATTTCGAGTTACATGCAACCA 57.554 34.783 5.15 0.00 0.00 3.67
3022 6219 5.643379 AATTTCGAGTTACATGCAACCAT 57.357 34.783 5.15 0.00 0.00 3.55
3023 6220 5.643379 ATTTCGAGTTACATGCAACCATT 57.357 34.783 5.15 0.00 0.00 3.16
3024 6221 4.418013 TTCGAGTTACATGCAACCATTG 57.582 40.909 5.15 0.00 0.00 2.82
3048 6245 6.782298 CAATCAATGCATTGGTAAACACAA 57.218 33.333 33.22 15.31 38.30 3.33
3049 6246 6.592166 CAATCAATGCATTGGTAAACACAAC 58.408 36.000 33.22 0.00 38.30 3.32
3050 6247 5.528043 TCAATGCATTGGTAAACACAACT 57.472 34.783 33.22 0.00 38.30 3.16
3051 6248 5.911752 TCAATGCATTGGTAAACACAACTT 58.088 33.333 33.22 0.00 38.30 2.66
3052 6249 7.043961 TCAATGCATTGGTAAACACAACTTA 57.956 32.000 33.22 10.93 38.30 2.24
3053 6250 7.492524 TCAATGCATTGGTAAACACAACTTAA 58.507 30.769 33.22 10.32 38.30 1.85
3054 6251 7.981789 TCAATGCATTGGTAAACACAACTTAAA 59.018 29.630 33.22 9.97 38.30 1.52
3055 6252 8.772705 CAATGCATTGGTAAACACAACTTAAAT 58.227 29.630 28.34 0.00 34.22 1.40
3056 6253 9.988815 AATGCATTGGTAAACACAACTTAAATA 57.011 25.926 12.09 0.00 0.00 1.40
3057 6254 9.988815 ATGCATTGGTAAACACAACTTAAATAA 57.011 25.926 0.00 0.00 0.00 1.40
3058 6255 9.817809 TGCATTGGTAAACACAACTTAAATAAA 57.182 25.926 0.00 0.00 0.00 1.40
3086 6283 9.630098 ACAAGCATATCAATTGAGTACTTTTTG 57.370 29.630 14.54 13.19 0.00 2.44
3087 6284 9.844790 CAAGCATATCAATTGAGTACTTTTTGA 57.155 29.630 14.54 14.55 0.00 2.69
3094 6291 8.801715 TCAATTGAGTACTTTTTGATTTGAGC 57.198 30.769 3.38 0.00 0.00 4.26
3095 6292 7.867403 TCAATTGAGTACTTTTTGATTTGAGCC 59.133 33.333 3.38 0.00 0.00 4.70
3096 6293 5.705609 TGAGTACTTTTTGATTTGAGCCC 57.294 39.130 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 240 7.068226 AGCACAGTAATTCCACTAAAAACACTT 59.932 33.333 0.00 0.00 0.00 3.16
478 480 4.263506 CCCTCACTTCTAAAACAGGACCAT 60.264 45.833 0.00 0.00 0.00 3.55
650 652 8.730680 GCGATGGTGGATAATGTTATTTTATCT 58.269 33.333 0.00 0.00 36.65 1.98
651 653 7.692291 CGCGATGGTGGATAATGTTATTTTATC 59.308 37.037 0.00 0.00 36.00 1.75
652 654 7.526608 CGCGATGGTGGATAATGTTATTTTAT 58.473 34.615 0.00 0.00 0.00 1.40
653 655 6.893759 CGCGATGGTGGATAATGTTATTTTA 58.106 36.000 0.00 0.00 0.00 1.52
654 656 5.757886 CGCGATGGTGGATAATGTTATTTT 58.242 37.500 0.00 0.00 0.00 1.82
655 657 5.356882 CGCGATGGTGGATAATGTTATTT 57.643 39.130 0.00 0.00 0.00 1.40
670 672 1.421410 CGGAGAAAGAACCGCGATGG 61.421 60.000 8.23 0.00 42.55 3.51
671 673 1.999051 CGGAGAAAGAACCGCGATG 59.001 57.895 8.23 0.00 42.55 3.84
672 674 4.496670 CGGAGAAAGAACCGCGAT 57.503 55.556 8.23 0.00 42.55 4.58
689 691 2.835895 GAGGACGGAGAGGGGAGC 60.836 72.222 0.00 0.00 0.00 4.70
704 706 0.103208 AGGCTGGCTATTTCGACGAG 59.897 55.000 0.13 0.00 0.00 4.18
765 767 2.738314 CAGCGAAGATGTTGTGTCATGA 59.262 45.455 0.00 0.00 40.13 3.07
788 790 0.843309 CACATACATGGGCCCACCTA 59.157 55.000 31.51 19.89 41.11 3.08
800 803 1.568504 GAGACCTGGTCCCACATACA 58.431 55.000 22.81 0.00 32.18 2.29
804 807 1.536418 CTGGAGACCTGGTCCCACA 60.536 63.158 24.47 18.89 32.47 4.17
865 868 0.101399 CGCTGCTACGTCAGAATCCT 59.899 55.000 8.35 0.00 36.19 3.24
878 881 4.802424 CAGAATCGTCTCGCTGCT 57.198 55.556 0.00 0.00 28.78 4.24
942 961 0.969894 CGAGGTGGTTTCTGGAGACT 59.030 55.000 0.00 0.00 0.00 3.24
981 1013 3.047877 CTGCGTCGGGGTTGGTTC 61.048 66.667 0.00 0.00 0.00 3.62
986 1018 4.555709 TTGTGCTGCGTCGGGGTT 62.556 61.111 0.00 0.00 0.00 4.11
1134 2954 1.138047 CGACGTAGGTTAAGCTGCCG 61.138 60.000 17.34 19.03 0.00 5.69
1150 2970 3.607987 CGCATTCGTCTCGCCGAC 61.608 66.667 0.00 0.00 36.42 4.79
1277 3151 3.694058 ATGAGGCCGCCTGCTGAAG 62.694 63.158 19.21 0.00 40.92 3.02
1359 3233 1.448540 CGCAACGCAGAGGGAGAAT 60.449 57.895 0.00 0.00 0.00 2.40
1484 4553 2.741985 CATGGCCGTGCGACTTGA 60.742 61.111 13.11 0.00 0.00 3.02
1751 4824 2.627945 TGCAGGTATCGATGAACCAAC 58.372 47.619 17.60 10.29 38.30 3.77
1868 4942 6.207810 AGTTGCAGTATAGTAGCTACAGATCC 59.792 42.308 25.28 9.52 36.66 3.36
1872 4946 7.033530 AGAAGTTGCAGTATAGTAGCTACAG 57.966 40.000 25.28 8.92 36.66 2.74
1882 4956 7.041372 GGACAGTGAAAAAGAAGTTGCAGTATA 60.041 37.037 0.00 0.00 0.00 1.47
1883 4957 6.238759 GGACAGTGAAAAAGAAGTTGCAGTAT 60.239 38.462 0.00 0.00 0.00 2.12
1894 4968 7.921786 CATTAGGTATGGACAGTGAAAAAGA 57.078 36.000 0.00 0.00 0.00 2.52
1914 5008 6.540438 AAGTTGCAGTAGTAGCTACCATTA 57.460 37.500 20.31 3.76 37.65 1.90
1943 5037 7.814264 TGGGTACGGTTTAAAGAAAATTGTA 57.186 32.000 0.00 0.00 0.00 2.41
1958 5052 1.422402 ACAAACAGGATTGGGTACGGT 59.578 47.619 0.00 0.00 34.56 4.83
1959 5053 2.081462 GACAAACAGGATTGGGTACGG 58.919 52.381 0.00 0.00 34.56 4.02
1960 5054 2.742053 CTGACAAACAGGATTGGGTACG 59.258 50.000 0.00 0.00 42.39 3.67
2023 5127 6.638468 AGATCTGATTTTGTCGCAAAGAAAAC 59.362 34.615 0.00 0.00 33.42 2.43
2060 5165 8.610248 TGAGATAATTTTTGTACTTCCGTTCA 57.390 30.769 0.00 0.00 0.00 3.18
2061 5166 9.887406 TTTGAGATAATTTTTGTACTTCCGTTC 57.113 29.630 0.00 0.00 0.00 3.95
2062 5167 9.673454 GTTTGAGATAATTTTTGTACTTCCGTT 57.327 29.630 0.00 0.00 0.00 4.44
2063 5168 8.842280 TGTTTGAGATAATTTTTGTACTTCCGT 58.158 29.630 0.00 0.00 0.00 4.69
2112 5217 1.741706 TGGTAGTCGTTCGATGGTCTC 59.258 52.381 0.00 0.00 0.00 3.36
2128 5233 2.905075 CTCATTCTGACGGCAATGGTA 58.095 47.619 3.13 0.00 31.86 3.25
2139 5244 4.838152 GCCGGCGGCTCATTCTGA 62.838 66.667 41.44 0.00 46.69 3.27
2157 5262 4.295119 AAGCGACGACAAGGGCGT 62.295 61.111 0.00 0.00 45.79 5.68
2158 5263 3.479269 GAAGCGACGACAAGGGCG 61.479 66.667 0.00 0.00 0.00 6.13
2165 5270 0.099082 CCCAGTAGAGAAGCGACGAC 59.901 60.000 0.00 0.00 0.00 4.34
2169 5274 2.058595 GGCCCCAGTAGAGAAGCGA 61.059 63.158 0.00 0.00 0.00 4.93
2182 5287 3.373565 CAAAGTCAAGCCGGCCCC 61.374 66.667 26.15 8.62 0.00 5.80
2184 5289 2.954611 GACAAAGTCAAGCCGGCC 59.045 61.111 26.15 7.74 32.09 6.13
2193 5298 0.716108 CGCCTGTCATCGACAAAGTC 59.284 55.000 0.00 0.00 42.26 3.01
2194 5299 0.670546 CCGCCTGTCATCGACAAAGT 60.671 55.000 0.00 0.00 42.26 2.66
2196 5301 1.375396 CCCGCCTGTCATCGACAAA 60.375 57.895 0.00 0.00 42.26 2.83
2214 5319 0.037326 TGCACATCCACGGAGACTTC 60.037 55.000 0.00 0.00 0.00 3.01
2217 5322 0.320771 AGTTGCACATCCACGGAGAC 60.321 55.000 0.00 0.00 0.00 3.36
2221 5326 1.086696 CCTTAGTTGCACATCCACGG 58.913 55.000 0.00 0.00 0.00 4.94
2223 5328 2.084546 GGACCTTAGTTGCACATCCAC 58.915 52.381 0.00 0.00 0.00 4.02
2226 5331 2.159627 CGTTGGACCTTAGTTGCACATC 59.840 50.000 0.00 0.00 0.00 3.06
2228 5333 1.588674 CGTTGGACCTTAGTTGCACA 58.411 50.000 0.00 0.00 0.00 4.57
2241 5346 2.664851 CAACTCCAGCGCGTTGGA 60.665 61.111 37.19 37.19 44.84 3.53
2249 5354 1.421485 CGACGATTGCAACTCCAGC 59.579 57.895 0.00 0.00 0.00 4.85
2251 5356 2.032634 GGCGACGATTGCAACTCCA 61.033 57.895 0.00 0.00 0.00 3.86
2256 5361 0.877743 TTCAATGGCGACGATTGCAA 59.122 45.000 0.00 0.00 32.43 4.08
2261 5366 1.813753 CGGGTTCAATGGCGACGAT 60.814 57.895 0.00 0.00 0.00 3.73
2278 5383 4.272748 TCACGTACTTCAGATCTATGGACG 59.727 45.833 18.80 18.80 0.00 4.79
2279 5384 5.066117 TGTCACGTACTTCAGATCTATGGAC 59.934 44.000 0.00 0.00 0.00 4.02
2281 5386 5.500645 TGTCACGTACTTCAGATCTATGG 57.499 43.478 0.00 0.00 0.00 2.74
2302 5407 8.834465 CCCATTTTCTACTAGTGAGATTTCATG 58.166 37.037 5.39 0.00 35.39 3.07
2305 5410 8.041323 TGACCCATTTTCTACTAGTGAGATTTC 58.959 37.037 5.39 0.00 0.00 2.17
2309 5414 7.496346 AATGACCCATTTTCTACTAGTGAGA 57.504 36.000 5.39 1.93 28.76 3.27
2310 5415 8.478877 ACTAATGACCCATTTTCTACTAGTGAG 58.521 37.037 5.39 0.00 35.54 3.51
2311 5416 8.375493 ACTAATGACCCATTTTCTACTAGTGA 57.625 34.615 5.39 0.00 35.54 3.41
2312 5417 7.711339 GGACTAATGACCCATTTTCTACTAGTG 59.289 40.741 5.39 0.00 35.54 2.74
2313 5418 7.147532 GGGACTAATGACCCATTTTCTACTAGT 60.148 40.741 0.00 0.00 45.49 2.57
2314 5419 7.217906 GGGACTAATGACCCATTTTCTACTAG 58.782 42.308 0.00 0.00 45.49 2.57
2315 5420 6.183360 CGGGACTAATGACCCATTTTCTACTA 60.183 42.308 0.00 0.00 46.30 1.82
2316 5421 5.396436 CGGGACTAATGACCCATTTTCTACT 60.396 44.000 0.00 0.00 46.30 2.57
2317 5422 4.814771 CGGGACTAATGACCCATTTTCTAC 59.185 45.833 0.00 0.00 46.30 2.59
2318 5423 4.141574 CCGGGACTAATGACCCATTTTCTA 60.142 45.833 0.00 0.00 46.30 2.10
2319 5424 3.371595 CCGGGACTAATGACCCATTTTCT 60.372 47.826 0.00 0.00 46.30 2.52
2320 5425 2.949644 CCGGGACTAATGACCCATTTTC 59.050 50.000 0.00 0.00 46.30 2.29
2321 5426 2.310647 ACCGGGACTAATGACCCATTTT 59.689 45.455 6.32 0.00 46.30 1.82
2322 5427 1.920351 ACCGGGACTAATGACCCATTT 59.080 47.619 6.32 0.00 46.30 2.32
2323 5428 1.591768 ACCGGGACTAATGACCCATT 58.408 50.000 6.32 0.00 46.30 3.16
2324 5429 1.489230 GAACCGGGACTAATGACCCAT 59.511 52.381 6.32 0.00 46.30 4.00
2325 5430 0.906775 GAACCGGGACTAATGACCCA 59.093 55.000 6.32 0.00 46.30 4.51
2326 5431 0.179702 GGAACCGGGACTAATGACCC 59.820 60.000 6.32 0.00 43.28 4.46
2327 5432 0.906775 TGGAACCGGGACTAATGACC 59.093 55.000 6.32 0.00 0.00 4.02
2328 5433 1.829222 TCTGGAACCGGGACTAATGAC 59.171 52.381 6.32 0.00 0.00 3.06
2329 5434 2.108168 CTCTGGAACCGGGACTAATGA 58.892 52.381 6.32 0.00 0.00 2.57
2330 5435 1.139058 CCTCTGGAACCGGGACTAATG 59.861 57.143 6.32 0.00 0.00 1.90
2331 5436 1.497161 CCTCTGGAACCGGGACTAAT 58.503 55.000 6.32 0.00 0.00 1.73
2332 5437 0.616679 CCCTCTGGAACCGGGACTAA 60.617 60.000 6.32 0.00 40.55 2.24
2333 5438 1.001248 CCCTCTGGAACCGGGACTA 59.999 63.158 6.32 0.00 40.55 2.59
2334 5439 2.284699 CCCTCTGGAACCGGGACT 60.285 66.667 6.32 0.00 40.55 3.85
2335 5440 4.097361 GCCCTCTGGAACCGGGAC 62.097 72.222 6.32 0.00 40.55 4.46
2338 5443 1.559065 TAAAGGCCCTCTGGAACCGG 61.559 60.000 0.00 0.00 0.00 5.28
2339 5444 0.107654 CTAAAGGCCCTCTGGAACCG 60.108 60.000 0.00 0.00 0.00 4.44
2340 5445 0.992695 ACTAAAGGCCCTCTGGAACC 59.007 55.000 0.00 0.00 0.00 3.62
2341 5446 1.065345 GGACTAAAGGCCCTCTGGAAC 60.065 57.143 0.00 0.00 0.00 3.62
2342 5447 1.286248 GGACTAAAGGCCCTCTGGAA 58.714 55.000 0.00 0.00 0.00 3.53
2343 5448 0.620700 GGGACTAAAGGCCCTCTGGA 60.621 60.000 14.19 0.00 41.31 3.86
2344 5449 0.914417 TGGGACTAAAGGCCCTCTGG 60.914 60.000 21.76 0.00 44.96 3.86
2345 5450 0.991920 TTGGGACTAAAGGCCCTCTG 59.008 55.000 21.76 0.00 44.96 3.35
2346 5451 1.987080 ATTGGGACTAAAGGCCCTCT 58.013 50.000 21.76 6.23 44.96 3.69
2347 5452 2.242452 AGAATTGGGACTAAAGGCCCTC 59.758 50.000 21.76 11.13 44.96 4.30
2348 5453 2.024941 CAGAATTGGGACTAAAGGCCCT 60.025 50.000 21.76 1.20 44.96 5.19
2349 5454 2.025321 TCAGAATTGGGACTAAAGGCCC 60.025 50.000 14.60 14.60 44.93 5.80
2350 5455 3.366052 TCAGAATTGGGACTAAAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
2351 5456 4.082190 GGTTTCAGAATTGGGACTAAAGGC 60.082 45.833 0.00 0.00 0.00 4.35
2352 5457 4.156008 CGGTTTCAGAATTGGGACTAAAGG 59.844 45.833 0.00 0.00 0.00 3.11
2353 5458 4.156008 CCGGTTTCAGAATTGGGACTAAAG 59.844 45.833 0.00 0.00 0.00 1.85
2354 5459 4.076394 CCGGTTTCAGAATTGGGACTAAA 58.924 43.478 0.00 0.00 0.00 1.85
2355 5460 3.560453 CCCGGTTTCAGAATTGGGACTAA 60.560 47.826 0.00 0.00 35.27 2.24
2356 5461 2.026636 CCCGGTTTCAGAATTGGGACTA 60.027 50.000 0.00 0.00 35.27 2.59
2357 5462 1.271926 CCCGGTTTCAGAATTGGGACT 60.272 52.381 0.00 0.00 35.27 3.85
2358 5463 1.173913 CCCGGTTTCAGAATTGGGAC 58.826 55.000 0.00 0.00 35.27 4.46
2359 5464 1.068948 TCCCGGTTTCAGAATTGGGA 58.931 50.000 11.72 11.72 38.20 4.37
2360 5465 1.173913 GTCCCGGTTTCAGAATTGGG 58.826 55.000 0.00 8.09 34.84 4.12
2361 5466 2.200373 AGTCCCGGTTTCAGAATTGG 57.800 50.000 0.00 0.00 0.00 3.16
2362 5467 4.156008 CCTTTAGTCCCGGTTTCAGAATTG 59.844 45.833 0.00 0.00 0.00 2.32
2363 5468 4.332828 CCTTTAGTCCCGGTTTCAGAATT 58.667 43.478 0.00 0.00 0.00 2.17
2364 5469 3.308188 CCCTTTAGTCCCGGTTTCAGAAT 60.308 47.826 0.00 0.00 0.00 2.40
2365 5470 2.039348 CCCTTTAGTCCCGGTTTCAGAA 59.961 50.000 0.00 0.00 0.00 3.02
2366 5471 1.626825 CCCTTTAGTCCCGGTTTCAGA 59.373 52.381 0.00 0.00 0.00 3.27
2367 5472 1.350019 ACCCTTTAGTCCCGGTTTCAG 59.650 52.381 0.00 0.00 0.00 3.02
2368 5473 1.348696 GACCCTTTAGTCCCGGTTTCA 59.651 52.381 0.00 0.00 0.00 2.69
2369 5474 1.673923 CGACCCTTTAGTCCCGGTTTC 60.674 57.143 0.00 0.00 32.91 2.78
2370 5475 0.322648 CGACCCTTTAGTCCCGGTTT 59.677 55.000 0.00 0.00 32.91 3.27
2371 5476 0.542702 TCGACCCTTTAGTCCCGGTT 60.543 55.000 0.00 0.00 32.91 4.44
2372 5477 0.969409 CTCGACCCTTTAGTCCCGGT 60.969 60.000 0.00 0.00 32.91 5.28
2373 5478 0.682209 TCTCGACCCTTTAGTCCCGG 60.682 60.000 0.00 0.00 32.91 5.73
2374 5479 0.455005 GTCTCGACCCTTTAGTCCCG 59.545 60.000 0.00 0.00 32.91 5.14
2375 5480 1.849977 AGTCTCGACCCTTTAGTCCC 58.150 55.000 0.00 0.00 32.91 4.46
2376 5481 4.677514 GCTTTAGTCTCGACCCTTTAGTCC 60.678 50.000 0.00 0.00 32.91 3.85
2377 5482 4.422840 GCTTTAGTCTCGACCCTTTAGTC 58.577 47.826 0.00 0.00 0.00 2.59
2378 5483 3.195182 GGCTTTAGTCTCGACCCTTTAGT 59.805 47.826 0.00 0.00 0.00 2.24
2379 5484 3.430513 GGGCTTTAGTCTCGACCCTTTAG 60.431 52.174 0.00 0.00 34.34 1.85
2380 5485 2.498885 GGGCTTTAGTCTCGACCCTTTA 59.501 50.000 0.00 0.00 34.34 1.85
2381 5486 1.278413 GGGCTTTAGTCTCGACCCTTT 59.722 52.381 0.00 0.00 34.34 3.11
2382 5487 0.903236 GGGCTTTAGTCTCGACCCTT 59.097 55.000 0.00 0.00 34.34 3.95
2383 5488 0.252103 TGGGCTTTAGTCTCGACCCT 60.252 55.000 5.22 0.00 38.23 4.34
2384 5489 0.175989 CTGGGCTTTAGTCTCGACCC 59.824 60.000 0.00 0.00 37.88 4.46
2385 5490 1.135053 GTCTGGGCTTTAGTCTCGACC 60.135 57.143 0.00 0.00 0.00 4.79
2386 5491 1.135053 GGTCTGGGCTTTAGTCTCGAC 60.135 57.143 0.00 0.00 0.00 4.20
2387 5492 1.183549 GGTCTGGGCTTTAGTCTCGA 58.816 55.000 0.00 0.00 0.00 4.04
2388 5493 1.187087 AGGTCTGGGCTTTAGTCTCG 58.813 55.000 0.00 0.00 0.00 4.04
2389 5494 3.704800 AAAGGTCTGGGCTTTAGTCTC 57.295 47.619 0.00 0.00 0.00 3.36
2390 5495 4.168883 ACTAAAGGTCTGGGCTTTAGTCT 58.831 43.478 2.77 0.00 45.26 3.24
2391 5496 4.554960 ACTAAAGGTCTGGGCTTTAGTC 57.445 45.455 2.77 0.00 45.26 2.59
2393 5498 3.370633 GGGACTAAAGGTCTGGGCTTTAG 60.371 52.174 1.97 1.97 43.97 1.85
2394 5499 2.574824 GGGACTAAAGGTCTGGGCTTTA 59.425 50.000 0.00 0.00 43.97 1.85
2395 5500 1.354705 GGGACTAAAGGTCTGGGCTTT 59.645 52.381 0.00 0.00 43.97 3.51
2396 5501 0.992695 GGGACTAAAGGTCTGGGCTT 59.007 55.000 0.00 0.00 43.97 4.35
2397 5502 1.265454 CGGGACTAAAGGTCTGGGCT 61.265 60.000 0.00 0.00 43.97 5.19
2398 5503 1.221021 CGGGACTAAAGGTCTGGGC 59.779 63.158 0.00 0.00 43.97 5.36
2399 5504 0.981943 AACGGGACTAAAGGTCTGGG 59.018 55.000 0.00 0.00 43.97 4.45
2400 5505 2.423577 CAAACGGGACTAAAGGTCTGG 58.576 52.381 0.00 0.00 43.97 3.86
2401 5506 1.804748 GCAAACGGGACTAAAGGTCTG 59.195 52.381 0.00 0.00 43.97 3.51
2402 5507 1.697982 AGCAAACGGGACTAAAGGTCT 59.302 47.619 0.00 0.00 43.97 3.85
2403 5508 2.180432 AGCAAACGGGACTAAAGGTC 57.820 50.000 0.00 0.00 43.79 3.85
2404 5509 2.651382 AAGCAAACGGGACTAAAGGT 57.349 45.000 0.00 0.00 0.00 3.50
2405 5510 4.258543 TCATAAGCAAACGGGACTAAAGG 58.741 43.478 0.00 0.00 0.00 3.11
2406 5511 5.869350 CTTCATAAGCAAACGGGACTAAAG 58.131 41.667 0.00 0.00 0.00 1.85
2407 5512 5.873179 CTTCATAAGCAAACGGGACTAAA 57.127 39.130 0.00 0.00 0.00 1.85
2421 5526 4.372656 CTCCTTTAGTCCCGCTTCATAAG 58.627 47.826 0.00 0.00 0.00 1.73
2422 5527 3.431766 GCTCCTTTAGTCCCGCTTCATAA 60.432 47.826 0.00 0.00 0.00 1.90
2423 5528 2.102588 GCTCCTTTAGTCCCGCTTCATA 59.897 50.000 0.00 0.00 0.00 2.15
2424 5529 1.134371 GCTCCTTTAGTCCCGCTTCAT 60.134 52.381 0.00 0.00 0.00 2.57
2425 5530 0.249398 GCTCCTTTAGTCCCGCTTCA 59.751 55.000 0.00 0.00 0.00 3.02
2426 5531 0.537653 AGCTCCTTTAGTCCCGCTTC 59.462 55.000 0.00 0.00 0.00 3.86
2427 5532 0.537653 GAGCTCCTTTAGTCCCGCTT 59.462 55.000 0.87 0.00 0.00 4.68
2428 5533 1.331399 GGAGCTCCTTTAGTCCCGCT 61.331 60.000 26.25 0.00 0.00 5.52
2429 5534 1.144276 GGAGCTCCTTTAGTCCCGC 59.856 63.158 26.25 0.00 0.00 6.13
2430 5535 0.175989 GTGGAGCTCCTTTAGTCCCG 59.824 60.000 32.28 0.00 36.82 5.14
2431 5536 0.175989 CGTGGAGCTCCTTTAGTCCC 59.824 60.000 32.28 4.74 36.82 4.46
2432 5537 0.896226 ACGTGGAGCTCCTTTAGTCC 59.104 55.000 32.28 5.83 36.82 3.85
2433 5538 1.404315 CCACGTGGAGCTCCTTTAGTC 60.404 57.143 32.28 14.44 37.39 2.59
2434 5539 0.608640 CCACGTGGAGCTCCTTTAGT 59.391 55.000 32.28 22.11 37.39 2.24
2435 5540 0.741221 GCCACGTGGAGCTCCTTTAG 60.741 60.000 38.30 21.51 37.39 1.85
2436 5541 1.295423 GCCACGTGGAGCTCCTTTA 59.705 57.895 38.30 10.99 37.39 1.85
2437 5542 2.032681 GCCACGTGGAGCTCCTTT 59.967 61.111 38.30 14.38 37.39 3.11
2438 5543 4.021925 GGCCACGTGGAGCTCCTT 62.022 66.667 38.30 14.75 37.39 3.36
2452 5557 4.828925 GAGCTCCAGACAGCGGCC 62.829 72.222 0.87 0.00 44.82 6.13
2453 5558 4.828925 GGAGCTCCAGACAGCGGC 62.829 72.222 28.43 0.00 44.82 6.53
2454 5559 3.385384 TGGAGCTCCAGACAGCGG 61.385 66.667 32.00 0.00 44.82 5.52
2462 5567 1.276622 GGACTAAAGGTGGAGCTCCA 58.723 55.000 32.00 32.00 45.30 3.86
2463 5568 0.542333 GGGACTAAAGGTGGAGCTCC 59.458 60.000 26.78 26.78 0.00 4.70
2464 5569 0.175989 CGGGACTAAAGGTGGAGCTC 59.824 60.000 4.71 4.71 0.00 4.09
2465 5570 1.265454 CCGGGACTAAAGGTGGAGCT 61.265 60.000 0.00 0.00 0.00 4.09
2466 5571 1.221021 CCGGGACTAAAGGTGGAGC 59.779 63.158 0.00 0.00 0.00 4.70
2467 5572 0.981943 AACCGGGACTAAAGGTGGAG 59.018 55.000 6.32 0.00 38.44 3.86
2468 5573 0.688487 CAACCGGGACTAAAGGTGGA 59.312 55.000 6.32 0.00 38.44 4.02
2469 5574 0.322187 CCAACCGGGACTAAAGGTGG 60.322 60.000 6.32 0.00 40.01 4.61
2470 5575 0.399075 ACCAACCGGGACTAAAGGTG 59.601 55.000 6.32 0.00 41.15 4.00
2471 5576 1.142936 AACCAACCGGGACTAAAGGT 58.857 50.000 6.32 0.00 41.15 3.50
2472 5577 1.530323 CAACCAACCGGGACTAAAGG 58.470 55.000 6.32 0.00 41.15 3.11
2473 5578 1.202842 ACCAACCAACCGGGACTAAAG 60.203 52.381 6.32 0.00 41.15 1.85
2474 5579 0.845337 ACCAACCAACCGGGACTAAA 59.155 50.000 6.32 0.00 41.15 1.85
2475 5580 0.845337 AACCAACCAACCGGGACTAA 59.155 50.000 6.32 0.00 41.15 2.24
2476 5581 0.108963 CAACCAACCAACCGGGACTA 59.891 55.000 6.32 0.00 41.15 2.59
2477 5582 1.152839 CAACCAACCAACCGGGACT 60.153 57.895 6.32 0.00 41.15 3.85
2478 5583 2.197605 CCAACCAACCAACCGGGAC 61.198 63.158 6.32 0.00 41.15 4.46
2479 5584 1.351080 TACCAACCAACCAACCGGGA 61.351 55.000 6.32 0.00 41.15 5.14
2480 5585 0.467659 TTACCAACCAACCAACCGGG 60.468 55.000 6.32 0.00 44.81 5.73
2481 5586 0.669619 GTTACCAACCAACCAACCGG 59.330 55.000 0.00 0.00 38.77 5.28
2482 5587 1.065851 GTGTTACCAACCAACCAACCG 59.934 52.381 0.00 0.00 0.00 4.44
2483 5588 1.409790 GGTGTTACCAACCAACCAACC 59.590 52.381 0.00 0.00 38.42 3.77
2484 5589 2.875087 GGTGTTACCAACCAACCAAC 57.125 50.000 0.00 0.00 38.42 3.77
2495 5600 0.975887 TAGTCCCGGTTGGTGTTACC 59.024 55.000 0.00 0.00 39.22 2.85
2496 5601 2.837532 TTAGTCCCGGTTGGTGTTAC 57.162 50.000 0.00 0.00 34.77 2.50
2497 5602 3.853355 TTTTAGTCCCGGTTGGTGTTA 57.147 42.857 0.00 0.00 34.77 2.41
2498 5603 2.732844 TTTTAGTCCCGGTTGGTGTT 57.267 45.000 0.00 0.00 34.77 3.32
2499 5604 2.732844 TTTTTAGTCCCGGTTGGTGT 57.267 45.000 0.00 0.00 34.77 4.16
2570 5675 9.527157 TGGGTGATTAGAGATTAAATTGTCAAA 57.473 29.630 0.00 0.00 0.00 2.69
2571 5676 8.956426 GTGGGTGATTAGAGATTAAATTGTCAA 58.044 33.333 0.00 0.00 0.00 3.18
2572 5677 8.328758 AGTGGGTGATTAGAGATTAAATTGTCA 58.671 33.333 0.00 0.00 0.00 3.58
2573 5678 8.738645 AGTGGGTGATTAGAGATTAAATTGTC 57.261 34.615 0.00 0.00 0.00 3.18
2574 5679 8.552296 AGAGTGGGTGATTAGAGATTAAATTGT 58.448 33.333 0.00 0.00 0.00 2.71
2575 5680 8.970859 AGAGTGGGTGATTAGAGATTAAATTG 57.029 34.615 0.00 0.00 0.00 2.32
2579 5684 9.434275 TGATTAGAGTGGGTGATTAGAGATTAA 57.566 33.333 0.00 0.00 0.00 1.40
2580 5685 8.861086 GTGATTAGAGTGGGTGATTAGAGATTA 58.139 37.037 0.00 0.00 0.00 1.75
2581 5686 7.202047 GGTGATTAGAGTGGGTGATTAGAGATT 60.202 40.741 0.00 0.00 0.00 2.40
2582 5687 6.268847 GGTGATTAGAGTGGGTGATTAGAGAT 59.731 42.308 0.00 0.00 0.00 2.75
2583 5688 5.598830 GGTGATTAGAGTGGGTGATTAGAGA 59.401 44.000 0.00 0.00 0.00 3.10
2584 5689 5.221541 GGGTGATTAGAGTGGGTGATTAGAG 60.222 48.000 0.00 0.00 0.00 2.43
2585 5690 4.654262 GGGTGATTAGAGTGGGTGATTAGA 59.346 45.833 0.00 0.00 0.00 2.10
2586 5691 4.202367 GGGGTGATTAGAGTGGGTGATTAG 60.202 50.000 0.00 0.00 0.00 1.73
2587 5692 3.714798 GGGGTGATTAGAGTGGGTGATTA 59.285 47.826 0.00 0.00 0.00 1.75
2588 5693 2.509964 GGGGTGATTAGAGTGGGTGATT 59.490 50.000 0.00 0.00 0.00 2.57
2589 5694 2.127708 GGGGTGATTAGAGTGGGTGAT 58.872 52.381 0.00 0.00 0.00 3.06
2590 5695 1.080498 AGGGGTGATTAGAGTGGGTGA 59.920 52.381 0.00 0.00 0.00 4.02
2591 5696 1.486726 GAGGGGTGATTAGAGTGGGTG 59.513 57.143 0.00 0.00 0.00 4.61
2592 5697 1.080498 TGAGGGGTGATTAGAGTGGGT 59.920 52.381 0.00 0.00 0.00 4.51
2593 5698 1.879575 TGAGGGGTGATTAGAGTGGG 58.120 55.000 0.00 0.00 0.00 4.61
2594 5699 3.041211 TGATGAGGGGTGATTAGAGTGG 58.959 50.000 0.00 0.00 0.00 4.00
2595 5700 3.181461 GGTGATGAGGGGTGATTAGAGTG 60.181 52.174 0.00 0.00 0.00 3.51
2596 5701 3.041946 GGTGATGAGGGGTGATTAGAGT 58.958 50.000 0.00 0.00 0.00 3.24
2597 5702 2.036475 CGGTGATGAGGGGTGATTAGAG 59.964 54.545 0.00 0.00 0.00 2.43
2598 5703 2.039418 CGGTGATGAGGGGTGATTAGA 58.961 52.381 0.00 0.00 0.00 2.10
2599 5704 1.541233 GCGGTGATGAGGGGTGATTAG 60.541 57.143 0.00 0.00 0.00 1.73
2600 5705 0.468226 GCGGTGATGAGGGGTGATTA 59.532 55.000 0.00 0.00 0.00 1.75
2601 5706 1.224592 GCGGTGATGAGGGGTGATT 59.775 57.895 0.00 0.00 0.00 2.57
2602 5707 2.746375 GGCGGTGATGAGGGGTGAT 61.746 63.158 0.00 0.00 0.00 3.06
2603 5708 3.399181 GGCGGTGATGAGGGGTGA 61.399 66.667 0.00 0.00 0.00 4.02
2604 5709 1.622607 TAAGGCGGTGATGAGGGGTG 61.623 60.000 0.00 0.00 0.00 4.61
2605 5710 1.306654 TAAGGCGGTGATGAGGGGT 60.307 57.895 0.00 0.00 0.00 4.95
2606 5711 1.447643 CTAAGGCGGTGATGAGGGG 59.552 63.158 0.00 0.00 0.00 4.79
2607 5712 1.227674 GCTAAGGCGGTGATGAGGG 60.228 63.158 0.00 0.00 0.00 4.30
2608 5713 1.227674 GGCTAAGGCGGTGATGAGG 60.228 63.158 0.00 0.00 39.81 3.86
2609 5714 4.445699 GGCTAAGGCGGTGATGAG 57.554 61.111 0.00 0.00 39.81 2.90
2618 5723 2.750888 CGGTTTGAGCGGCTAAGGC 61.751 63.158 0.60 0.00 35.16 4.35
2619 5724 3.486263 CGGTTTGAGCGGCTAAGG 58.514 61.111 0.60 0.00 35.16 2.69
2626 5731 1.740296 ATTCGTCCCGGTTTGAGCG 60.740 57.895 0.00 0.00 39.06 5.03
2627 5732 1.794222 CATTCGTCCCGGTTTGAGC 59.206 57.895 0.00 0.00 0.00 4.26
2628 5733 0.673644 AGCATTCGTCCCGGTTTGAG 60.674 55.000 0.00 0.00 0.00 3.02
2629 5734 0.672401 GAGCATTCGTCCCGGTTTGA 60.672 55.000 0.00 0.00 0.00 2.69
2630 5735 0.953471 TGAGCATTCGTCCCGGTTTG 60.953 55.000 0.00 0.00 0.00 2.93
2631 5736 0.953960 GTGAGCATTCGTCCCGGTTT 60.954 55.000 0.00 0.00 0.00 3.27
2632 5737 1.375523 GTGAGCATTCGTCCCGGTT 60.376 57.895 0.00 0.00 0.00 4.44
2633 5738 1.899437 ATGTGAGCATTCGTCCCGGT 61.899 55.000 0.00 0.00 29.54 5.28
2634 5739 0.744414 AATGTGAGCATTCGTCCCGG 60.744 55.000 0.00 0.00 41.08 5.73
2635 5740 1.860950 CTAATGTGAGCATTCGTCCCG 59.139 52.381 0.00 0.00 43.61 5.14
2636 5741 2.866762 GACTAATGTGAGCATTCGTCCC 59.133 50.000 11.50 0.00 44.88 4.46
2639 5744 2.738643 CGGGACTAATGTGAGCATTCGT 60.739 50.000 0.00 0.00 43.61 3.85
2640 5745 1.860950 CGGGACTAATGTGAGCATTCG 59.139 52.381 0.00 0.00 43.61 3.34
2641 5746 2.213499 CCGGGACTAATGTGAGCATTC 58.787 52.381 0.00 0.00 43.61 2.67
2642 5747 1.559682 ACCGGGACTAATGTGAGCATT 59.440 47.619 6.32 0.00 46.14 3.56
2643 5748 1.204146 ACCGGGACTAATGTGAGCAT 58.796 50.000 6.32 0.00 36.80 3.79
2644 5749 0.981183 AACCGGGACTAATGTGAGCA 59.019 50.000 6.32 0.00 0.00 4.26
2645 5750 1.653151 GAACCGGGACTAATGTGAGC 58.347 55.000 6.32 0.00 0.00 4.26
2646 5751 1.203994 ACGAACCGGGACTAATGTGAG 59.796 52.381 6.32 0.00 0.00 3.51
2647 5752 1.067425 CACGAACCGGGACTAATGTGA 60.067 52.381 6.32 0.00 28.17 3.58
2648 5753 1.067425 TCACGAACCGGGACTAATGTG 60.067 52.381 6.32 4.66 32.99 3.21
2649 5754 1.259609 TCACGAACCGGGACTAATGT 58.740 50.000 6.32 0.00 32.99 2.71
2650 5755 2.201732 CATCACGAACCGGGACTAATG 58.798 52.381 6.32 0.00 43.84 1.90
2651 5756 1.472728 GCATCACGAACCGGGACTAAT 60.473 52.381 6.32 0.00 43.84 1.73
2652 5757 0.108520 GCATCACGAACCGGGACTAA 60.109 55.000 6.32 0.00 43.84 2.24
2653 5758 1.252215 TGCATCACGAACCGGGACTA 61.252 55.000 6.32 0.00 43.84 2.59
2654 5759 2.107041 TTGCATCACGAACCGGGACT 62.107 55.000 6.32 0.00 43.84 3.85
2655 5760 1.669760 TTGCATCACGAACCGGGAC 60.670 57.895 6.32 0.00 43.84 4.46
2656 5761 1.669760 GTTGCATCACGAACCGGGA 60.670 57.895 6.32 0.00 45.56 5.14
2657 5762 2.686816 GGTTGCATCACGAACCGGG 61.687 63.158 6.32 0.00 32.66 5.73
2658 5763 2.867472 GGTTGCATCACGAACCGG 59.133 61.111 0.00 0.00 32.66 5.28
2660 5765 2.686816 CCCGGTTGCATCACGAACC 61.687 63.158 0.00 0.07 38.65 3.62
2661 5766 1.669760 TCCCGGTTGCATCACGAAC 60.670 57.895 0.00 0.00 0.00 3.95
2662 5767 1.669760 GTCCCGGTTGCATCACGAA 60.670 57.895 0.00 0.00 0.00 3.85
2663 5768 1.252215 TAGTCCCGGTTGCATCACGA 61.252 55.000 0.00 0.00 0.00 4.35
2664 5769 0.390603 TTAGTCCCGGTTGCATCACG 60.391 55.000 0.00 0.00 0.00 4.35
2665 5770 1.670811 CATTAGTCCCGGTTGCATCAC 59.329 52.381 0.00 0.00 0.00 3.06
2666 5771 1.280710 ACATTAGTCCCGGTTGCATCA 59.719 47.619 0.00 0.00 0.00 3.07
2667 5772 1.670811 CACATTAGTCCCGGTTGCATC 59.329 52.381 0.00 0.00 0.00 3.91
2668 5773 1.004277 ACACATTAGTCCCGGTTGCAT 59.996 47.619 0.00 0.00 0.00 3.96
2669 5774 0.398696 ACACATTAGTCCCGGTTGCA 59.601 50.000 0.00 0.00 0.00 4.08
2670 5775 2.004733 GTACACATTAGTCCCGGTTGC 58.995 52.381 0.00 0.00 0.00 4.17
2671 5776 3.322211 TGTACACATTAGTCCCGGTTG 57.678 47.619 0.00 0.00 0.00 3.77
2672 5777 4.020039 TCAATGTACACATTAGTCCCGGTT 60.020 41.667 7.25 0.00 44.10 4.44
2673 5778 3.516300 TCAATGTACACATTAGTCCCGGT 59.484 43.478 7.25 0.00 44.10 5.28
2674 5779 4.119862 CTCAATGTACACATTAGTCCCGG 58.880 47.826 7.25 0.00 44.10 5.73
2675 5780 3.555956 GCTCAATGTACACATTAGTCCCG 59.444 47.826 7.25 0.00 44.10 5.14
2676 5781 4.572389 CAGCTCAATGTACACATTAGTCCC 59.428 45.833 7.25 0.00 44.10 4.46
2677 5782 5.063944 CACAGCTCAATGTACACATTAGTCC 59.936 44.000 7.25 0.00 44.10 3.85
2678 5783 5.869344 TCACAGCTCAATGTACACATTAGTC 59.131 40.000 7.25 0.74 44.10 2.59
2679 5784 5.639506 GTCACAGCTCAATGTACACATTAGT 59.360 40.000 7.25 0.46 44.10 2.24
2680 5785 5.063944 GGTCACAGCTCAATGTACACATTAG 59.936 44.000 7.25 7.08 44.10 1.73
2681 5786 4.935205 GGTCACAGCTCAATGTACACATTA 59.065 41.667 7.25 0.00 44.10 1.90
2682 5787 3.753272 GGTCACAGCTCAATGTACACATT 59.247 43.478 0.00 1.70 46.62 2.71
2683 5788 3.244526 TGGTCACAGCTCAATGTACACAT 60.245 43.478 0.00 0.00 38.41 3.21
2684 5789 2.103941 TGGTCACAGCTCAATGTACACA 59.896 45.455 0.00 0.00 0.00 3.72
2685 5790 2.766313 TGGTCACAGCTCAATGTACAC 58.234 47.619 0.00 0.00 0.00 2.90
2686 5791 3.483808 TTGGTCACAGCTCAATGTACA 57.516 42.857 0.00 0.00 0.00 2.90
2687 5792 3.365364 GCTTTGGTCACAGCTCAATGTAC 60.365 47.826 2.22 0.00 32.87 2.90
2688 5793 2.813754 GCTTTGGTCACAGCTCAATGTA 59.186 45.455 2.22 0.00 32.87 2.29
2689 5794 1.610522 GCTTTGGTCACAGCTCAATGT 59.389 47.619 2.22 0.00 32.87 2.71
2690 5795 1.068055 GGCTTTGGTCACAGCTCAATG 60.068 52.381 8.70 0.00 36.20 2.82
2691 5796 1.251251 GGCTTTGGTCACAGCTCAAT 58.749 50.000 8.70 0.00 36.20 2.57
2692 5797 0.823356 GGGCTTTGGTCACAGCTCAA 60.823 55.000 8.70 0.00 36.42 3.02
2693 5798 1.228245 GGGCTTTGGTCACAGCTCA 60.228 57.895 8.70 0.00 36.42 4.26
2694 5799 1.073897 AGGGCTTTGGTCACAGCTC 59.926 57.895 8.70 5.12 36.69 4.09
2695 5800 1.228367 CAGGGCTTTGGTCACAGCT 60.228 57.895 8.70 0.00 36.20 4.24
2696 5801 1.109323 AACAGGGCTTTGGTCACAGC 61.109 55.000 0.84 0.84 35.07 4.40
2697 5802 1.402787 AAACAGGGCTTTGGTCACAG 58.597 50.000 0.00 0.00 0.00 3.66
2698 5803 1.859302 AAAACAGGGCTTTGGTCACA 58.141 45.000 0.00 0.00 0.00 3.58
2699 5804 2.979814 AAAAACAGGGCTTTGGTCAC 57.020 45.000 0.00 0.00 0.00 3.67
2715 5820 7.042992 CGTCATGTGACAAGACACTAGTAAAAA 60.043 37.037 19.24 0.00 44.99 1.94
2716 5821 6.419710 CGTCATGTGACAAGACACTAGTAAAA 59.580 38.462 19.24 0.00 44.99 1.52
2717 5822 5.918576 CGTCATGTGACAAGACACTAGTAAA 59.081 40.000 19.24 0.00 44.99 2.01
2718 5823 5.239963 TCGTCATGTGACAAGACACTAGTAA 59.760 40.000 19.24 0.00 44.99 2.24
2719 5824 4.758165 TCGTCATGTGACAAGACACTAGTA 59.242 41.667 19.24 0.00 44.99 1.82
2720 5825 3.568430 TCGTCATGTGACAAGACACTAGT 59.432 43.478 19.24 0.00 44.99 2.57
2721 5826 4.083271 TCTCGTCATGTGACAAGACACTAG 60.083 45.833 19.24 13.06 44.99 2.57
2722 5827 3.818773 TCTCGTCATGTGACAAGACACTA 59.181 43.478 19.24 4.97 44.99 2.74
2723 5828 2.623416 TCTCGTCATGTGACAAGACACT 59.377 45.455 19.24 0.00 44.99 3.55
2724 5829 3.013276 TCTCGTCATGTGACAAGACAC 57.987 47.619 19.24 0.00 44.99 3.67
2725 5830 3.726291 TTCTCGTCATGTGACAAGACA 57.274 42.857 19.24 7.19 44.99 3.41
2726 5831 3.802139 TGTTTCTCGTCATGTGACAAGAC 59.198 43.478 10.64 10.64 44.99 3.01
2758 5863 3.691342 CGCCGTCTCTTGGGACCA 61.691 66.667 0.00 0.00 33.07 4.02
2759 5864 4.452733 CCGCCGTCTCTTGGGACC 62.453 72.222 0.00 0.00 33.07 4.46
2763 5868 3.358076 GACTCCCGCCGTCTCTTGG 62.358 68.421 0.00 0.00 0.00 3.61
2775 5880 1.031029 ACGGCTCGAGTTAGACTCCC 61.031 60.000 15.13 2.77 42.12 4.30
2776 5881 1.330213 GTACGGCTCGAGTTAGACTCC 59.670 57.143 15.13 3.54 42.12 3.85
2784 5889 0.526662 CTTGAAGGTACGGCTCGAGT 59.473 55.000 15.13 0.00 0.00 4.18
2785 5890 0.179134 CCTTGAAGGTACGGCTCGAG 60.179 60.000 8.45 8.45 0.00 4.04
2789 5894 2.226962 TAGTCCTTGAAGGTACGGCT 57.773 50.000 11.60 5.83 36.53 5.52
2790 5895 3.323751 TTTAGTCCTTGAAGGTACGGC 57.676 47.619 11.60 0.00 36.53 5.68
2791 5896 5.353400 GGATTTTTAGTCCTTGAAGGTACGG 59.647 44.000 11.60 0.00 36.53 4.02
2793 5898 8.944029 GTTAGGATTTTTAGTCCTTGAAGGTAC 58.056 37.037 11.60 8.26 43.52 3.34
2794 5899 8.105197 GGTTAGGATTTTTAGTCCTTGAAGGTA 58.895 37.037 11.60 0.00 43.52 3.08
2795 5900 6.946583 GGTTAGGATTTTTAGTCCTTGAAGGT 59.053 38.462 11.60 0.00 43.52 3.50
2796 5901 7.175797 AGGTTAGGATTTTTAGTCCTTGAAGG 58.824 38.462 4.45 4.45 43.52 3.46
2797 5902 9.734984 TTAGGTTAGGATTTTTAGTCCTTGAAG 57.265 33.333 0.00 0.00 43.52 3.02
2799 5904 9.511272 GTTTAGGTTAGGATTTTTAGTCCTTGA 57.489 33.333 0.00 0.00 43.52 3.02
2800 5905 9.516546 AGTTTAGGTTAGGATTTTTAGTCCTTG 57.483 33.333 0.00 0.00 43.52 3.61
2813 6009 4.079787 TCCGGCTAGTAGTTTAGGTTAGGA 60.080 45.833 0.00 0.00 0.00 2.94
2847 6043 0.252513 TGACGGGAAGGGGAATCTCA 60.253 55.000 0.00 0.00 0.00 3.27
2877 6073 1.551908 CCTCTCCTCTGCTGCCACTT 61.552 60.000 0.00 0.00 0.00 3.16
2883 6079 0.249405 GATTCGCCTCTCCTCTGCTG 60.249 60.000 0.00 0.00 0.00 4.41
2886 6082 0.103937 GTGGATTCGCCTCTCCTCTG 59.896 60.000 0.00 0.00 37.63 3.35
2887 6083 1.388065 CGTGGATTCGCCTCTCCTCT 61.388 60.000 0.00 0.00 37.63 3.69
2888 6084 1.066587 CGTGGATTCGCCTCTCCTC 59.933 63.158 0.00 0.00 37.63 3.71
2908 6105 0.320771 TCCAAGCTTCACCGAAGAGC 60.321 55.000 7.90 0.00 41.71 4.09
2912 6109 1.048601 ACTCTCCAAGCTTCACCGAA 58.951 50.000 0.00 0.00 0.00 4.30
2931 6128 4.278669 CCTAGTCGGCTAGAGCAAATTCTA 59.721 45.833 25.44 0.00 45.77 2.10
2935 6132 1.689273 CCCTAGTCGGCTAGAGCAAAT 59.311 52.381 25.44 0.00 45.77 2.32
2959 6156 9.988350 AGCACAATAAAAATGAGACTTATAACG 57.012 29.630 0.00 0.00 0.00 3.18
2990 6187 8.446489 CATGTAACTCGAAATTTAAACATGCA 57.554 30.769 9.06 0.00 37.31 3.96
3025 6222 6.424509 AGTTGTGTTTACCAATGCATTGATTG 59.575 34.615 35.47 22.91 40.14 2.67
3026 6223 6.523840 AGTTGTGTTTACCAATGCATTGATT 58.476 32.000 35.47 24.59 40.14 2.57
3027 6224 6.100404 AGTTGTGTTTACCAATGCATTGAT 57.900 33.333 35.47 25.19 40.14 2.57
3028 6225 5.528043 AGTTGTGTTTACCAATGCATTGA 57.472 34.783 35.47 17.69 40.14 2.57
3029 6226 7.706281 TTAAGTTGTGTTTACCAATGCATTG 57.294 32.000 28.91 28.91 37.52 2.82
3030 6227 8.900983 ATTTAAGTTGTGTTTACCAATGCATT 57.099 26.923 5.99 5.99 0.00 3.56
3031 6228 9.988815 TTATTTAAGTTGTGTTTACCAATGCAT 57.011 25.926 0.00 0.00 0.00 3.96
3032 6229 9.817809 TTTATTTAAGTTGTGTTTACCAATGCA 57.182 25.926 0.00 0.00 0.00 3.96
3060 6257 9.630098 CAAAAAGTACTCAATTGATATGCTTGT 57.370 29.630 17.94 12.75 0.00 3.16
3061 6258 9.844790 TCAAAAAGTACTCAATTGATATGCTTG 57.155 29.630 17.94 12.13 0.00 4.01
3068 6265 9.415544 GCTCAAATCAAAAAGTACTCAATTGAT 57.584 29.630 18.03 18.03 41.20 2.57
3069 6266 7.867403 GGCTCAAATCAAAAAGTACTCAATTGA 59.133 33.333 8.12 8.12 34.80 2.57
3070 6267 7.116805 GGGCTCAAATCAAAAAGTACTCAATTG 59.883 37.037 0.00 0.00 0.00 2.32
3071 6268 7.154656 GGGCTCAAATCAAAAAGTACTCAATT 58.845 34.615 0.00 0.00 0.00 2.32
3072 6269 6.691508 GGGCTCAAATCAAAAAGTACTCAAT 58.308 36.000 0.00 0.00 0.00 2.57
3073 6270 6.084326 GGGCTCAAATCAAAAAGTACTCAA 57.916 37.500 0.00 0.00 0.00 3.02
3074 6271 5.705609 GGGCTCAAATCAAAAAGTACTCA 57.294 39.130 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.