Multiple sequence alignment - TraesCS3B01G117600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G117600 chr3B 100.000 2555 0 0 1 2555 84877058 84874504 0.000000e+00 4719.0
1 TraesCS3B01G117600 chr3B 91.694 903 57 5 658 1556 84763207 84764095 0.000000e+00 1236.0
2 TraesCS3B01G117600 chr3B 89.474 418 41 2 1 418 85054374 85053960 2.250000e-145 525.0
3 TraesCS3B01G117600 chr3B 80.455 220 32 11 1927 2144 739569184 739568974 9.460000e-35 158.0
4 TraesCS3B01G117600 chr3A 90.676 2145 154 21 1 2132 65403241 65401130 0.000000e+00 2811.0
5 TraesCS3B01G117600 chr3A 95.130 575 19 1 982 1556 65360850 65361415 0.000000e+00 898.0
6 TraesCS3B01G117600 chr3A 86.520 408 28 14 2174 2555 65401124 65400718 8.450000e-115 424.0
7 TraesCS3B01G117600 chr3A 90.761 184 12 2 750 929 65360670 65360852 9.130000e-60 241.0
8 TraesCS3B01G117600 chr3A 95.699 93 4 0 658 750 65360545 65360637 1.580000e-32 150.0
9 TraesCS3B01G117600 chr3D 91.540 1312 71 19 430 1720 54458707 54457415 0.000000e+00 1772.0
10 TraesCS3B01G117600 chr3D 91.983 923 48 7 641 1556 54393747 54394650 0.000000e+00 1271.0
11 TraesCS3B01G117600 chr3D 87.404 389 39 5 1754 2136 54457412 54457028 3.020000e-119 438.0
12 TraesCS3B01G117600 chr3D 86.284 401 29 12 2180 2555 54457016 54456617 1.830000e-111 412.0
13 TraesCS3B01G117600 chr3D 93.750 128 8 0 305 432 54461654 54461527 2.590000e-45 193.0
14 TraesCS3B01G117600 chr3D 86.517 89 10 2 2079 2165 468378847 468378935 2.090000e-16 97.1
15 TraesCS3B01G117600 chr7B 86.792 106 9 4 2026 2130 382603431 382603532 2.080000e-21 113.0
16 TraesCS3B01G117600 chr6D 85.859 99 10 4 2072 2166 294097561 294097659 4.500000e-18 102.0
17 TraesCS3B01G117600 chr4D 85.714 98 11 2 2072 2166 434531070 434531167 1.620000e-17 100.0
18 TraesCS3B01G117600 chr5B 82.653 98 13 3 2072 2165 605958030 605958127 1.630000e-12 84.2
19 TraesCS3B01G117600 chr2B 75.000 228 33 14 1944 2168 148399782 148399576 1.630000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G117600 chr3B 84874504 84877058 2554 True 4719.000000 4719 100.000000 1 2555 1 chr3B.!!$R1 2554
1 TraesCS3B01G117600 chr3B 84763207 84764095 888 False 1236.000000 1236 91.694000 658 1556 1 chr3B.!!$F1 898
2 TraesCS3B01G117600 chr3A 65400718 65403241 2523 True 1617.500000 2811 88.598000 1 2555 2 chr3A.!!$R1 2554
3 TraesCS3B01G117600 chr3A 65360545 65361415 870 False 429.666667 898 93.863333 658 1556 3 chr3A.!!$F1 898
4 TraesCS3B01G117600 chr3D 54393747 54394650 903 False 1271.000000 1271 91.983000 641 1556 1 chr3D.!!$F1 915
5 TraesCS3B01G117600 chr3D 54456617 54461654 5037 True 703.750000 1772 89.744500 305 2555 4 chr3D.!!$R1 2250

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 249 0.107017 CATCCCTCCTTGCAACCGAT 60.107 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 5026 0.111253 CACTGAAAGGGAGGCCAACT 59.889 55.0 5.01 0.0 43.23 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.328258 AATAGGGTTCAAGCGCCACT 59.672 50.000 2.29 0.00 0.00 4.00
55 56 2.034048 GAGGAGAAGATGGCCCCGAC 62.034 65.000 0.00 0.00 0.00 4.79
90 91 3.690745 GGCTTTGCCTGTCAGCAT 58.309 55.556 0.73 0.00 46.69 3.79
92 93 1.530013 GGCTTTGCCTGTCAGCATGT 61.530 55.000 0.73 0.00 46.69 3.21
94 95 0.388134 CTTTGCCTGTCAGCATGTGC 60.388 55.000 0.00 0.00 43.64 4.57
202 203 0.398381 CAAGGAGAGGGAGAGAGGGG 60.398 65.000 0.00 0.00 0.00 4.79
209 210 0.793617 AGGGAGAGAGGGGAAAGTGA 59.206 55.000 0.00 0.00 0.00 3.41
211 212 2.592512 AGGGAGAGAGGGGAAAGTGATA 59.407 50.000 0.00 0.00 0.00 2.15
216 217 2.365617 GAGAGGGGAAAGTGATATCGCA 59.634 50.000 18.16 0.00 0.00 5.10
217 218 2.771943 AGAGGGGAAAGTGATATCGCAA 59.228 45.455 18.16 0.00 0.00 4.85
221 222 3.065371 GGGGAAAGTGATATCGCAACTTG 59.935 47.826 18.16 0.00 0.00 3.16
223 224 3.938963 GGAAAGTGATATCGCAACTTGGA 59.061 43.478 18.16 0.00 0.00 3.53
247 249 0.107017 CATCCCTCCTTGCAACCGAT 60.107 55.000 0.00 0.00 0.00 4.18
279 281 1.288752 CCGTTTGAACACCCCATGC 59.711 57.895 0.00 0.00 0.00 4.06
345 347 7.860872 TCACAAGTCACATACGATGTATACATC 59.139 37.037 28.73 28.73 46.93 3.06
420 422 4.497173 CCACAACAACACATGAACATTCGA 60.497 41.667 0.00 0.00 0.00 3.71
456 3280 3.826157 TGCTGGTTAAATCTGGTCCTTTG 59.174 43.478 0.00 0.00 0.00 2.77
494 3323 4.235762 CCTCACCCCATACCGGCG 62.236 72.222 0.00 0.00 0.00 6.46
495 3324 4.235762 CTCACCCCATACCGGCGG 62.236 72.222 27.06 27.06 0.00 6.13
506 3335 4.508128 CCGGCGGCAGACACGTAT 62.508 66.667 15.42 0.00 0.00 3.06
541 3370 9.914131 GCCTAGTTAAAGAAAGAAAATGTGATT 57.086 29.630 0.00 0.00 0.00 2.57
556 3385 0.724549 TGATTATCACGCACGCAACC 59.275 50.000 0.00 0.00 0.00 3.77
573 3403 3.181476 GCAACCCACACCAATCATTATCC 60.181 47.826 0.00 0.00 0.00 2.59
622 3452 2.887151 AACCTCCCCATTGTTCTGAG 57.113 50.000 0.00 0.00 0.00 3.35
638 3469 1.064803 CTGAGACCGACAATCTCCGAG 59.935 57.143 0.00 0.00 41.72 4.63
715 3547 5.757808 CACACACACCAATCATTATCCGATA 59.242 40.000 0.00 0.00 0.00 2.92
789 3654 0.250513 ATCTCGGAGACAAACTGGCC 59.749 55.000 10.41 0.00 0.00 5.36
799 3664 1.003718 AAACTGGCCCTCACGTAGC 60.004 57.895 0.00 0.00 0.00 3.58
900 3776 2.823747 TGCCGCGTCTATATATGAACCT 59.176 45.455 4.92 0.00 0.00 3.50
937 3813 1.067916 CACACAACCAAAGCCAGCC 59.932 57.895 0.00 0.00 0.00 4.85
940 3816 3.604667 CAACCAAAGCCAGCCGCA 61.605 61.111 0.00 0.00 41.38 5.69
941 3817 3.297620 AACCAAAGCCAGCCGCAG 61.298 61.111 0.00 0.00 41.38 5.18
942 3818 4.586235 ACCAAAGCCAGCCGCAGT 62.586 61.111 0.00 0.00 41.38 4.40
943 3819 3.297620 CCAAAGCCAGCCGCAGTT 61.298 61.111 0.00 0.00 41.38 3.16
968 3846 0.592500 CATCGATCTAGCACGCACGT 60.593 55.000 0.00 0.00 0.00 4.49
976 3858 1.855213 TAGCACGCACGTACGGAGTT 61.855 55.000 21.06 5.39 37.78 3.01
977 3859 1.442520 GCACGCACGTACGGAGTTA 60.443 57.895 21.06 0.00 37.78 2.24
978 3860 1.400990 GCACGCACGTACGGAGTTAG 61.401 60.000 21.06 5.90 37.78 2.34
979 3861 0.110056 CACGCACGTACGGAGTTAGT 60.110 55.000 21.06 7.65 37.78 2.24
988 3870 3.308323 CGTACGGAGTTAGTACCAGTCTC 59.692 52.174 7.57 0.00 37.78 3.36
1311 4196 2.017559 ATGGCTACTTCCTCGCCGAC 62.018 60.000 0.00 0.00 46.67 4.79
1315 4200 0.809385 CTACTTCCTCGCCGACTTCA 59.191 55.000 0.00 0.00 0.00 3.02
1321 4206 1.371267 CTCGCCGACTTCAACGTCA 60.371 57.895 0.00 0.00 33.54 4.35
1343 4228 1.948145 CGAGAAGGCCGACTACTACAT 59.052 52.381 0.00 0.00 0.00 2.29
1488 4373 2.432300 CGGCCAGGGGTACGAGAAT 61.432 63.158 2.24 0.00 0.00 2.40
1533 4418 1.071471 CTTCAAGCCGGACACCTGT 59.929 57.895 5.05 0.00 0.00 4.00
1578 4463 2.650608 GTCCGTTGATTTGAACTGCAC 58.349 47.619 0.00 0.00 0.00 4.57
1653 4542 5.866092 GGATTTGAGAAATTTGTGGAGCTTC 59.134 40.000 0.00 0.00 0.00 3.86
1656 4545 5.850557 TGAGAAATTTGTGGAGCTTCAAA 57.149 34.783 0.00 5.72 37.82 2.69
1774 4666 3.181450 CCTCTTCCTTGGACAAGTCAAGT 60.181 47.826 10.81 0.00 39.78 3.16
1779 4671 7.918076 TCTTCCTTGGACAAGTCAAGTATATT 58.082 34.615 10.81 0.00 39.78 1.28
1826 4718 0.178068 ACGGGTAGCGCATTCTCAAT 59.822 50.000 11.47 0.00 0.00 2.57
1874 4766 1.003718 GAACTAGTGGTTGCGGCCT 60.004 57.895 0.00 0.00 38.41 5.19
1894 4791 3.249559 CCTGCTTGAGAGAAAGTTGTGTC 59.750 47.826 0.00 0.00 0.00 3.67
1895 4792 3.872696 TGCTTGAGAGAAAGTTGTGTCA 58.127 40.909 0.00 0.00 0.00 3.58
1972 4870 8.624701 AATAAAATTTTCTCGCATCACATGAG 57.375 30.769 6.72 0.00 0.00 2.90
1975 4873 1.362768 TTCTCGCATCACATGAGCAC 58.637 50.000 0.00 0.00 0.00 4.40
2003 4901 9.889128 ACATCCATCTCAAAAAGAAAAGAAAAA 57.111 25.926 0.00 0.00 37.61 1.94
2005 4903 8.947055 TCCATCTCAAAAAGAAAAGAAAAAGG 57.053 30.769 0.00 0.00 37.61 3.11
2117 5015 3.672447 CAACCAGCATGCGCCACA 61.672 61.111 13.01 0.00 39.83 4.17
2136 5034 1.143813 ATGGCATAGCTAGTTGGCCT 58.856 50.000 21.70 10.23 44.85 5.19
2137 5035 0.469917 TGGCATAGCTAGTTGGCCTC 59.530 55.000 21.70 0.00 44.85 4.70
2138 5036 0.250510 GGCATAGCTAGTTGGCCTCC 60.251 60.000 16.80 0.00 41.39 4.30
2139 5037 0.250510 GCATAGCTAGTTGGCCTCCC 60.251 60.000 3.32 0.00 0.00 4.30
2140 5038 1.428869 CATAGCTAGTTGGCCTCCCT 58.571 55.000 3.32 0.00 0.00 4.20
2141 5039 1.771255 CATAGCTAGTTGGCCTCCCTT 59.229 52.381 3.32 0.00 0.00 3.95
2142 5040 1.966845 TAGCTAGTTGGCCTCCCTTT 58.033 50.000 3.32 0.00 0.00 3.11
2143 5041 0.621082 AGCTAGTTGGCCTCCCTTTC 59.379 55.000 3.32 0.00 0.00 2.62
2144 5042 0.328258 GCTAGTTGGCCTCCCTTTCA 59.672 55.000 3.32 0.00 0.00 2.69
2145 5043 1.680249 GCTAGTTGGCCTCCCTTTCAG 60.680 57.143 3.32 0.00 0.00 3.02
2146 5044 1.630878 CTAGTTGGCCTCCCTTTCAGT 59.369 52.381 3.32 0.00 0.00 3.41
2147 5045 0.111253 AGTTGGCCTCCCTTTCAGTG 59.889 55.000 3.32 0.00 0.00 3.66
2148 5046 1.228552 TTGGCCTCCCTTTCAGTGC 60.229 57.895 3.32 0.00 0.00 4.40
2149 5047 2.747855 GGCCTCCCTTTCAGTGCG 60.748 66.667 0.00 0.00 0.00 5.34
2150 5048 2.347490 GCCTCCCTTTCAGTGCGA 59.653 61.111 0.00 0.00 0.00 5.10
2151 5049 1.078143 GCCTCCCTTTCAGTGCGAT 60.078 57.895 0.00 0.00 0.00 4.58
2152 5050 0.678048 GCCTCCCTTTCAGTGCGATT 60.678 55.000 0.00 0.00 0.00 3.34
2153 5051 1.406887 GCCTCCCTTTCAGTGCGATTA 60.407 52.381 0.00 0.00 0.00 1.75
2154 5052 2.939640 GCCTCCCTTTCAGTGCGATTAA 60.940 50.000 0.00 0.00 0.00 1.40
2155 5053 3.545703 CCTCCCTTTCAGTGCGATTAAT 58.454 45.455 0.00 0.00 0.00 1.40
2156 5054 3.313526 CCTCCCTTTCAGTGCGATTAATG 59.686 47.826 0.00 0.00 0.00 1.90
2157 5055 3.278574 TCCCTTTCAGTGCGATTAATGG 58.721 45.455 0.00 0.00 0.00 3.16
2158 5056 2.358898 CCCTTTCAGTGCGATTAATGGG 59.641 50.000 0.00 0.00 32.06 4.00
2159 5057 3.016736 CCTTTCAGTGCGATTAATGGGT 58.983 45.455 0.00 0.00 0.00 4.51
2160 5058 3.443681 CCTTTCAGTGCGATTAATGGGTT 59.556 43.478 0.00 0.00 0.00 4.11
2161 5059 4.082245 CCTTTCAGTGCGATTAATGGGTTT 60.082 41.667 0.00 0.00 0.00 3.27
2162 5060 5.124776 CCTTTCAGTGCGATTAATGGGTTTA 59.875 40.000 0.00 0.00 0.00 2.01
2163 5061 6.349777 CCTTTCAGTGCGATTAATGGGTTTAA 60.350 38.462 0.00 0.00 34.37 1.52
2164 5062 6.767524 TTCAGTGCGATTAATGGGTTTAAT 57.232 33.333 0.00 0.00 42.05 1.40
2165 5063 7.867305 TTCAGTGCGATTAATGGGTTTAATA 57.133 32.000 0.00 0.00 39.96 0.98
2166 5064 8.458573 TTCAGTGCGATTAATGGGTTTAATAT 57.541 30.769 0.00 0.00 39.96 1.28
2167 5065 8.458573 TCAGTGCGATTAATGGGTTTAATATT 57.541 30.769 0.00 0.00 39.96 1.28
2168 5066 8.564574 TCAGTGCGATTAATGGGTTTAATATTC 58.435 33.333 0.00 0.00 39.96 1.75
2169 5067 7.807907 CAGTGCGATTAATGGGTTTAATATTCC 59.192 37.037 0.00 0.00 39.96 3.01
2170 5068 7.039993 AGTGCGATTAATGGGTTTAATATTCCC 60.040 37.037 4.11 4.11 39.96 3.97
2171 5069 6.209788 TGCGATTAATGGGTTTAATATTCCCC 59.790 38.462 7.97 8.90 39.96 4.81
2273 5175 4.682787 TCAATAACTGCTATGACCGTCAG 58.317 43.478 7.41 0.00 0.00 3.51
2280 5182 4.830046 ACTGCTATGACCGTCAGATTAGAT 59.170 41.667 7.41 0.00 0.00 1.98
2282 5184 4.827284 TGCTATGACCGTCAGATTAGATGA 59.173 41.667 7.41 0.00 0.00 2.92
2406 5333 5.382303 CCTTGCACAATTACAGTTCTTACG 58.618 41.667 0.00 0.00 0.00 3.18
2442 5370 6.096423 AGTTCCCTCTAAAAAGTTGTTTCCAC 59.904 38.462 0.00 0.00 0.00 4.02
2460 5388 3.706594 TCCACACAAAAGGGCATAAAACA 59.293 39.130 0.00 0.00 0.00 2.83
2477 5405 9.418045 GCATAAAACAAAATTAGGTGTACATGT 57.582 29.630 2.69 2.69 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.230497 CTTCTCCTCCCGCCCTCTA 59.770 63.158 0.00 0.00 0.00 2.43
34 35 2.456443 GGGGCCATCTTCTCCTCCC 61.456 68.421 4.39 0.00 0.00 4.30
104 105 2.560119 CCTCCTCCGCATCTCCTCG 61.560 68.421 0.00 0.00 0.00 4.63
106 107 1.152567 CTCCTCCTCCGCATCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
111 112 2.123077 CTCCCTCCTCCTCCGCAT 60.123 66.667 0.00 0.00 0.00 4.73
112 113 4.465446 CCTCCCTCCTCCTCCGCA 62.465 72.222 0.00 0.00 0.00 5.69
114 115 4.548513 CCCCTCCCTCCTCCTCCG 62.549 77.778 0.00 0.00 0.00 4.63
177 178 1.078567 CTCCCTCTCCTTGCACAGC 60.079 63.158 0.00 0.00 0.00 4.40
179 180 0.115152 TCTCTCCCTCTCCTTGCACA 59.885 55.000 0.00 0.00 0.00 4.57
184 185 0.556380 TCCCCTCTCTCCCTCTCCTT 60.556 60.000 0.00 0.00 0.00 3.36
202 203 4.870426 TCTCCAAGTTGCGATATCACTTTC 59.130 41.667 3.12 0.00 0.00 2.62
209 210 4.576463 GGATGTTTCTCCAAGTTGCGATAT 59.424 41.667 0.00 0.00 35.24 1.63
211 212 2.749621 GGATGTTTCTCCAAGTTGCGAT 59.250 45.455 0.00 0.00 35.24 4.58
216 217 3.441500 GGAGGGATGTTTCTCCAAGTT 57.558 47.619 4.66 0.00 46.54 2.66
223 224 2.519013 GTTGCAAGGAGGGATGTTTCT 58.481 47.619 0.00 0.00 0.00 2.52
247 249 1.883275 CAAACGGGTTATTGGCACTGA 59.117 47.619 0.00 0.00 0.00 3.41
445 3269 3.327757 AGTTGATGCTACAAAGGACCAGA 59.672 43.478 0.00 0.00 0.00 3.86
456 3280 3.873952 GGTGAGGATTGAGTTGATGCTAC 59.126 47.826 0.00 0.00 0.00 3.58
506 3335 5.811796 TTCTTTAACTAGGCTACACACCA 57.188 39.130 0.00 0.00 0.00 4.17
541 3370 2.030401 GTGGGTTGCGTGCGTGATA 61.030 57.895 0.00 0.00 0.00 2.15
556 3385 4.388485 TGATCGGATAATGATTGGTGTGG 58.612 43.478 0.00 0.00 0.00 4.17
573 3403 8.141835 TGGTACAAAATCATTAGACATGATCG 57.858 34.615 0.00 0.00 34.48 3.69
622 3452 2.649331 TTTCTCGGAGATTGTCGGTC 57.351 50.000 8.81 0.00 33.89 4.79
638 3469 3.482110 GCGTTAATGGCGATCACATTTTC 59.518 43.478 15.32 9.53 39.18 2.29
789 3654 0.597637 CGGCATTAGGCTACGTGAGG 60.598 60.000 0.00 0.00 44.01 3.86
968 3846 3.370953 GGGAGACTGGTACTAACTCCGTA 60.371 52.174 18.67 0.00 45.39 4.02
976 3858 2.005350 TGGAAGGGGAGACTGGTACTA 58.995 52.381 0.00 0.00 0.00 1.82
977 3859 0.790993 TGGAAGGGGAGACTGGTACT 59.209 55.000 0.00 0.00 0.00 2.73
978 3860 1.196012 CTGGAAGGGGAGACTGGTAC 58.804 60.000 0.00 0.00 0.00 3.34
979 3861 0.617820 GCTGGAAGGGGAGACTGGTA 60.618 60.000 0.00 0.00 0.00 3.25
988 3870 3.142838 CGCCATTGCTGGAAGGGG 61.143 66.667 14.35 6.40 46.37 4.79
1321 4206 0.254178 TAGTAGTCGGCCTTCTCGGT 59.746 55.000 0.00 0.00 34.25 4.69
1624 4513 7.358770 TCCACAAATTTCTCAAATCCAAAGA 57.641 32.000 0.00 0.00 0.00 2.52
1730 4622 4.365514 TCTGAATAAGACTTGCCCACAA 57.634 40.909 0.00 0.00 0.00 3.33
1748 4640 2.370189 ACTTGTCCAAGGAAGAGGTCTG 59.630 50.000 11.45 0.00 42.53 3.51
1785 4677 5.086058 GTGTGTATAATGCGTTTGAAGTGG 58.914 41.667 0.00 0.00 0.00 4.00
1826 4718 6.170506 ACGAATCAAAATGCACTACCTCTTA 58.829 36.000 0.00 0.00 0.00 2.10
1874 4766 3.872696 TGACACAACTTTCTCTCAAGCA 58.127 40.909 0.00 0.00 0.00 3.91
1921 4819 7.745620 TTATTTTCAGAGGAAGTTGAAGGAC 57.254 36.000 0.00 0.00 35.01 3.85
1972 4870 3.507233 TCTTTTTGAGATGGATGTGGTGC 59.493 43.478 0.00 0.00 0.00 5.01
1975 4873 6.985117 TCTTTTCTTTTTGAGATGGATGTGG 58.015 36.000 0.00 0.00 33.49 4.17
2085 4983 0.879090 GGTTGGCCACGGTAAGAAAG 59.121 55.000 3.88 0.00 34.09 2.62
2095 4993 4.424566 CGCATGCTGGTTGGCCAC 62.425 66.667 17.13 0.00 40.46 5.01
2117 5015 1.072965 GAGGCCAACTAGCTATGCCAT 59.927 52.381 19.65 9.43 44.60 4.40
2128 5026 0.111253 CACTGAAAGGGAGGCCAACT 59.889 55.000 5.01 0.00 43.23 3.16
2136 5034 3.278574 CCATTAATCGCACTGAAAGGGA 58.721 45.455 0.00 0.00 43.23 4.20
2137 5035 2.358898 CCCATTAATCGCACTGAAAGGG 59.641 50.000 0.00 0.00 43.62 3.95
2138 5036 3.016736 ACCCATTAATCGCACTGAAAGG 58.983 45.455 0.00 0.00 39.30 3.11
2139 5037 4.701956 AACCCATTAATCGCACTGAAAG 57.298 40.909 0.00 0.00 42.29 2.62
2140 5038 6.576662 TTAAACCCATTAATCGCACTGAAA 57.423 33.333 0.00 0.00 0.00 2.69
2141 5039 6.767524 ATTAAACCCATTAATCGCACTGAA 57.232 33.333 0.00 0.00 39.49 3.02
2142 5040 8.458573 AATATTAAACCCATTAATCGCACTGA 57.541 30.769 0.00 0.00 42.04 3.41
2143 5041 7.807907 GGAATATTAAACCCATTAATCGCACTG 59.192 37.037 0.00 0.00 42.04 3.66
2144 5042 7.039993 GGGAATATTAAACCCATTAATCGCACT 60.040 37.037 5.94 0.00 42.04 4.40
2145 5043 7.088272 GGGAATATTAAACCCATTAATCGCAC 58.912 38.462 5.94 0.00 42.04 5.34
2146 5044 6.209788 GGGGAATATTAAACCCATTAATCGCA 59.790 38.462 14.44 0.00 42.04 5.10
2147 5045 6.627243 GGGGAATATTAAACCCATTAATCGC 58.373 40.000 14.44 0.00 42.04 4.58
2206 5108 7.104043 TGATGGAGAATTAGCAAATCCAAAG 57.896 36.000 0.00 0.00 42.98 2.77
2247 5149 5.918608 ACGGTCATAGCAGTTATTGAGATT 58.081 37.500 0.00 0.00 0.00 2.40
2316 5218 7.698836 AAAATGTAAATGTGCACAAAGAGAC 57.301 32.000 25.72 16.96 0.00 3.36
2352 5254 4.140518 CGTGCAACTTTAGTTACATGCA 57.859 40.909 3.52 3.52 34.24 3.96
2356 5258 3.562141 ACATGCGTGCAACTTTAGTTACA 59.438 39.130 5.64 0.00 36.32 2.41
2373 5275 2.048877 GTGCAAGGCCACACATGC 60.049 61.111 16.19 12.86 36.77 4.06
2416 5344 7.283807 GTGGAAACAACTTTTTAGAGGGAACTA 59.716 37.037 0.00 0.00 46.06 2.24
2417 5345 6.096423 GTGGAAACAACTTTTTAGAGGGAACT 59.904 38.462 0.00 0.00 46.06 3.01
2442 5370 8.288913 CCTAATTTTGTTTTATGCCCTTTTGTG 58.711 33.333 0.00 0.00 0.00 3.33
2460 5388 9.638239 CATTGCTTTACATGTACACCTAATTTT 57.362 29.630 4.68 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.