Multiple sequence alignment - TraesCS3B01G117500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G117500 chr3B 100.000 2161 0 0 1 2161 84762436 84764596 0.000000e+00 3991.0
1 TraesCS3B01G117500 chr3B 91.694 903 57 7 772 1660 84876401 84875503 0.000000e+00 1236.0
2 TraesCS3B01G117500 chr3B 95.217 230 8 3 1932 2160 1661102 1661329 7.000000e-96 361.0
3 TraesCS3B01G117500 chr3B 93.939 231 10 4 1932 2161 637622476 637622249 1.960000e-91 346.0
4 TraesCS3B01G117500 chr3B 96.985 199 5 1 1668 1866 84778478 84778281 1.530000e-87 333.0
5 TraesCS3B01G117500 chr3B 93.970 199 10 2 1669 1866 637645141 637644944 1.550000e-77 300.0
6 TraesCS3B01G117500 chr3B 94.330 194 9 2 1674 1866 1633019 1633211 2.000000e-76 296.0
7 TraesCS3B01G117500 chr3B 92.241 116 8 1 241 356 70582106 70582220 2.120000e-36 163.0
8 TraesCS3B01G117500 chr3B 90.090 111 8 3 353 461 394097869 394097760 9.920000e-30 141.0
9 TraesCS3B01G117500 chr3B 100.000 48 0 0 1882 1929 84764249 84764296 3.650000e-14 89.8
10 TraesCS3B01G117500 chr3B 97.872 47 1 0 1882 1928 84778332 84778286 6.100000e-12 82.4
11 TraesCS3B01G117500 chr3B 95.556 45 2 0 1884 1928 1633162 1633206 3.670000e-09 73.1
12 TraesCS3B01G117500 chr3B 100.000 37 0 0 2623 2659 84764494 84764458 4.750000e-08 69.4
13 TraesCS3B01G117500 chr3B 100.000 37 0 0 2623 2659 84765058 84765094 4.750000e-08 69.4
14 TraesCS3B01G117500 chr3D 93.492 1306 63 6 372 1673 54393376 54394663 0.000000e+00 1921.0
15 TraesCS3B01G117500 chr3D 93.437 899 44 6 772 1660 54458476 54457583 0.000000e+00 1319.0
16 TraesCS3B01G117500 chr3D 96.281 242 9 0 1 242 54393105 54393346 5.330000e-107 398.0
17 TraesCS3B01G117500 chr3D 87.970 133 13 3 106 236 532171834 532171965 1.270000e-33 154.0
18 TraesCS3B01G117500 chr3A 94.886 880 36 4 781 1660 65402577 65401707 0.000000e+00 1367.0
19 TraesCS3B01G117500 chr3A 96.534 577 20 0 1096 1672 65360851 65361427 0.000000e+00 955.0
20 TraesCS3B01G117500 chr3A 91.000 300 16 5 578 872 65360352 65360645 6.900000e-106 394.0
21 TraesCS3B01G117500 chr3A 93.583 187 12 0 856 1042 65360666 65360852 2.020000e-71 279.0
22 TraesCS3B01G117500 chr3A 95.413 109 4 1 1 109 65359897 65360004 3.520000e-39 172.0
23 TraesCS3B01G117500 chr6B 98.723 235 3 0 1927 2161 257354672 257354438 4.090000e-113 418.0
24 TraesCS3B01G117500 chr6B 97.409 193 3 2 1674 1866 257367968 257367778 7.100000e-86 327.0
25 TraesCS3B01G117500 chr6B 90.909 132 12 0 105 236 162269297 162269428 7.560000e-41 178.0
26 TraesCS3B01G117500 chr6B 90.625 128 11 1 241 368 188194835 188194709 4.550000e-38 169.0
27 TraesCS3B01G117500 chr6B 97.872 47 1 0 1882 1928 257367829 257367783 6.100000e-12 82.4
28 TraesCS3B01G117500 chr6B 100.000 37 0 0 2623 2659 257354540 257354576 4.750000e-08 69.4
29 TraesCS3B01G117500 chr7B 98.718 234 2 1 1928 2161 465846483 465846715 5.300000e-112 414.0
30 TraesCS3B01G117500 chr7B 98.446 193 2 1 1674 1866 465820906 465821097 3.280000e-89 339.0
31 TraesCS3B01G117500 chr7B 90.000 110 10 1 353 461 162141174 162141283 9.920000e-30 141.0
32 TraesCS3B01G117500 chr7B 100.000 47 0 0 1882 1928 465821046 465821092 1.310000e-13 87.9
33 TraesCS3B01G117500 chr7B 100.000 37 0 0 2623 2659 465846614 465846578 4.750000e-08 69.4
34 TraesCS3B01G117500 chr2B 98.291 234 3 1 1928 2161 611684910 611684678 2.460000e-110 409.0
35 TraesCS3B01G117500 chr2B 95.279 233 8 3 1929 2160 731612807 731612577 1.500000e-97 366.0
36 TraesCS3B01G117500 chr2B 94.301 193 10 1 1674 1866 611698330 611698139 7.200000e-76 294.0
37 TraesCS3B01G117500 chr2B 95.745 47 2 0 1882 1928 611698190 611698144 2.840000e-10 76.8
38 TraesCS3B01G117500 chr5B 97.059 238 7 0 1924 2161 652960597 652960834 4.120000e-108 401.0
39 TraesCS3B01G117500 chr5B 94.421 233 10 3 1929 2160 115885676 115885906 3.260000e-94 355.0
40 TraesCS3B01G117500 chr5B 97.927 193 3 1 1674 1866 652947317 652947508 1.530000e-87 333.0
41 TraesCS3B01G117500 chr5B 92.821 195 11 3 1674 1866 701870804 701870611 2.020000e-71 279.0
42 TraesCS3B01G117500 chr5B 91.795 195 14 2 1673 1866 115871897 115872090 1.210000e-68 270.0
43 TraesCS3B01G117500 chr5B 88.889 135 15 0 216 350 677288759 677288625 1.640000e-37 167.0
44 TraesCS3B01G117500 chr5B 100.000 47 0 0 1882 1928 652947457 652947503 1.310000e-13 87.9
45 TraesCS3B01G117500 chr1B 93.644 236 9 5 1927 2161 39845787 39846017 5.450000e-92 348.0
46 TraesCS3B01G117500 chr1D 89.726 146 13 2 97 242 332998750 332998607 4.520000e-43 185.0
47 TraesCS3B01G117500 chr4B 89.726 146 12 3 98 242 33177313 33177170 1.630000e-42 183.0
48 TraesCS3B01G117500 chr4B 88.034 117 13 1 360 475 33177147 33177031 1.280000e-28 137.0
49 TraesCS3B01G117500 chr7A 88.966 145 15 1 92 236 55891365 55891508 7.560000e-41 178.0
50 TraesCS3B01G117500 chr5A 94.495 109 6 0 239 347 656477311 656477419 4.550000e-38 169.0
51 TraesCS3B01G117500 chr5A 92.308 117 8 1 241 357 177605197 177605082 5.890000e-37 165.0
52 TraesCS3B01G117500 chr5A 90.741 108 10 0 354 461 132812417 132812310 7.670000e-31 145.0
53 TraesCS3B01G117500 chr6D 92.373 118 7 2 232 348 67156419 67156535 1.640000e-37 167.0
54 TraesCS3B01G117500 chr6D 90.984 122 10 1 227 348 112344363 112344483 2.120000e-36 163.0
55 TraesCS3B01G117500 chr6D 91.597 119 9 1 230 347 401298637 401298519 2.120000e-36 163.0
56 TraesCS3B01G117500 chr4A 87.586 145 17 1 92 236 668155548 668155691 1.640000e-37 167.0
57 TraesCS3B01G117500 chr5D 88.406 138 15 1 100 236 77056385 77056522 5.890000e-37 165.0
58 TraesCS3B01G117500 chr5D 87.719 114 12 1 354 467 114912378 114912267 5.970000e-27 132.0
59 TraesCS3B01G117500 chr5D 87.963 108 13 0 354 461 325462717 325462824 7.730000e-26 128.0
60 TraesCS3B01G117500 chr5D 86.957 115 12 2 354 468 545302967 545302856 2.780000e-25 126.0
61 TraesCS3B01G117500 chr2A 88.636 132 14 1 106 236 326245657 326245526 2.740000e-35 159.0
62 TraesCS3B01G117500 chr2A 89.815 108 11 0 354 461 709046086 709046193 3.570000e-29 139.0
63 TraesCS3B01G117500 chr7D 91.964 112 9 0 240 351 604474326 604474215 9.850000e-35 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G117500 chr3B 84762436 84765094 2658 False 1383.4 3991 100.0000 1 2659 3 chr3B.!!$F4 2658
1 TraesCS3B01G117500 chr3B 84875503 84876401 898 True 1236.0 1236 91.6940 772 1660 1 chr3B.!!$R2 888
2 TraesCS3B01G117500 chr3D 54457583 54458476 893 True 1319.0 1319 93.4370 772 1660 1 chr3D.!!$R1 888
3 TraesCS3B01G117500 chr3D 54393105 54394663 1558 False 1159.5 1921 94.8865 1 1673 2 chr3D.!!$F2 1672
4 TraesCS3B01G117500 chr3A 65401707 65402577 870 True 1367.0 1367 94.8860 781 1660 1 chr3A.!!$R1 879
5 TraesCS3B01G117500 chr3A 65359897 65361427 1530 False 450.0 955 94.1325 1 1672 4 chr3A.!!$F1 1671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 917 0.107703 TGCCTCCATGGTGTTCGATC 60.108 55.0 12.58 0.0 38.35 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2077 2390 0.096976 CATCGCAATCACGTGGTTCC 59.903 55.0 12.04 0.47 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 7.770201 ACGAGTTCTAAAAAGATAGTACTCCC 58.230 38.462 0.00 0.00 42.60 4.30
125 126 5.070823 AGTACTCCCTCCGTTCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
164 165 5.488645 TTCGAAAAGTCAAACCCTACAAC 57.511 39.130 0.00 0.00 0.00 3.32
182 183 5.476091 ACAACCTTTGACCAAGTTTTTGA 57.524 34.783 0.00 0.00 36.36 2.69
254 255 9.125906 CATTATAATAAGTACTCCCTTCGTTCG 57.874 37.037 0.00 0.00 0.00 3.95
255 256 4.382345 AATAAGTACTCCCTTCGTTCGG 57.618 45.455 0.00 0.00 0.00 4.30
256 257 1.915141 AAGTACTCCCTTCGTTCGGA 58.085 50.000 0.00 0.00 0.00 4.55
257 258 1.915141 AGTACTCCCTTCGTTCGGAA 58.085 50.000 0.00 0.00 0.00 4.30
258 259 2.454538 AGTACTCCCTTCGTTCGGAAT 58.545 47.619 0.00 0.00 33.26 3.01
259 260 2.830321 AGTACTCCCTTCGTTCGGAATT 59.170 45.455 0.00 0.00 33.26 2.17
260 261 4.019174 AGTACTCCCTTCGTTCGGAATTA 58.981 43.478 0.00 0.00 33.26 1.40
261 262 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
262 263 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
263 264 4.019174 ACTCCCTTCGTTCGGAATTACTA 58.981 43.478 0.00 0.00 33.26 1.82
264 265 4.097589 ACTCCCTTCGTTCGGAATTACTAG 59.902 45.833 0.00 0.00 33.26 2.57
265 266 4.019174 TCCCTTCGTTCGGAATTACTAGT 58.981 43.478 0.00 0.00 33.26 2.57
266 267 4.096984 TCCCTTCGTTCGGAATTACTAGTC 59.903 45.833 0.00 0.00 33.26 2.59
267 268 4.097589 CCCTTCGTTCGGAATTACTAGTCT 59.902 45.833 0.00 0.00 33.26 3.24
268 269 5.272397 CCTTCGTTCGGAATTACTAGTCTC 58.728 45.833 0.00 0.00 33.26 3.36
269 270 4.526970 TCGTTCGGAATTACTAGTCTCG 57.473 45.455 0.00 0.00 0.00 4.04
270 271 4.183865 TCGTTCGGAATTACTAGTCTCGA 58.816 43.478 0.00 0.25 0.00 4.04
271 272 4.631377 TCGTTCGGAATTACTAGTCTCGAA 59.369 41.667 0.00 6.62 32.67 3.71
272 273 5.122239 TCGTTCGGAATTACTAGTCTCGAAA 59.878 40.000 0.00 0.00 34.97 3.46
273 274 5.796935 CGTTCGGAATTACTAGTCTCGAAAA 59.203 40.000 0.00 0.00 34.97 2.29
274 275 6.471519 CGTTCGGAATTACTAGTCTCGAAAAT 59.528 38.462 0.00 0.00 34.97 1.82
275 276 7.641411 CGTTCGGAATTACTAGTCTCGAAAATA 59.359 37.037 0.00 0.00 34.97 1.40
276 277 8.956014 GTTCGGAATTACTAGTCTCGAAAATAG 58.044 37.037 0.00 0.00 34.97 1.73
277 278 8.442632 TCGGAATTACTAGTCTCGAAAATAGA 57.557 34.615 0.00 0.00 0.00 1.98
278 279 9.064706 TCGGAATTACTAGTCTCGAAAATAGAT 57.935 33.333 0.00 0.00 0.00 1.98
279 280 9.119329 CGGAATTACTAGTCTCGAAAATAGATG 57.881 37.037 0.00 0.00 0.00 2.90
280 281 9.968870 GGAATTACTAGTCTCGAAAATAGATGT 57.031 33.333 0.00 0.00 0.00 3.06
283 284 9.953697 ATTACTAGTCTCGAAAATAGATGTGTC 57.046 33.333 0.00 0.00 0.00 3.67
284 285 7.633193 ACTAGTCTCGAAAATAGATGTGTCT 57.367 36.000 0.00 0.00 38.52 3.41
285 286 8.734218 ACTAGTCTCGAAAATAGATGTGTCTA 57.266 34.615 0.00 0.00 41.03 2.59
286 287 9.175312 ACTAGTCTCGAAAATAGATGTGTCTAA 57.825 33.333 0.00 0.00 40.21 2.10
289 290 9.141400 AGTCTCGAAAATAGATGTGTCTAAAAC 57.859 33.333 0.00 0.00 40.21 2.43
290 291 9.141400 GTCTCGAAAATAGATGTGTCTAAAACT 57.859 33.333 0.00 0.00 40.21 2.66
301 302 9.924650 AGATGTGTCTAAAACTAAAATACGTCT 57.075 29.630 0.00 0.00 31.36 4.18
320 321 6.556212 ACGTCTAGATATATCCATTTCTGCG 58.444 40.000 9.18 6.40 0.00 5.18
321 322 6.374613 ACGTCTAGATATATCCATTTCTGCGA 59.625 38.462 9.18 0.00 0.00 5.10
322 323 6.689241 CGTCTAGATATATCCATTTCTGCGAC 59.311 42.308 9.18 2.25 0.00 5.19
323 324 7.539436 GTCTAGATATATCCATTTCTGCGACA 58.461 38.462 9.18 0.00 31.74 4.35
324 325 8.029522 GTCTAGATATATCCATTTCTGCGACAA 58.970 37.037 9.18 0.00 31.74 3.18
325 326 8.246871 TCTAGATATATCCATTTCTGCGACAAG 58.753 37.037 9.18 0.00 0.00 3.16
326 327 6.763355 AGATATATCCATTTCTGCGACAAGT 58.237 36.000 9.18 0.00 0.00 3.16
327 328 7.896811 AGATATATCCATTTCTGCGACAAGTA 58.103 34.615 9.18 0.00 0.00 2.24
328 329 8.367911 AGATATATCCATTTCTGCGACAAGTAA 58.632 33.333 9.18 0.00 0.00 2.24
329 330 9.155975 GATATATCCATTTCTGCGACAAGTAAT 57.844 33.333 0.81 0.00 0.00 1.89
330 331 7.807977 ATATCCATTTCTGCGACAAGTAATT 57.192 32.000 0.00 0.00 0.00 1.40
331 332 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
332 333 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
333 334 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
334 335 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
335 336 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
336 337 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
337 338 2.734606 CTGCGACAAGTAATTCCGAACA 59.265 45.455 0.00 0.00 0.00 3.18
338 339 2.734606 TGCGACAAGTAATTCCGAACAG 59.265 45.455 0.00 0.00 0.00 3.16
339 340 2.991190 GCGACAAGTAATTCCGAACAGA 59.009 45.455 0.00 0.00 0.00 3.41
340 341 3.060895 GCGACAAGTAATTCCGAACAGAG 59.939 47.826 0.00 0.00 0.00 3.35
341 342 3.612860 CGACAAGTAATTCCGAACAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
342 343 3.933332 GACAAGTAATTCCGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
343 344 3.581332 ACAAGTAATTCCGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
344 345 4.184629 CAAGTAATTCCGAACAGAGGGAG 58.815 47.826 0.00 0.00 33.01 4.30
345 346 3.442076 AGTAATTCCGAACAGAGGGAGT 58.558 45.455 0.00 0.00 33.01 3.85
346 347 4.607239 AGTAATTCCGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 33.01 2.59
357 358 6.477033 CGAACAGAGGGAGTAGTTTCATATTG 59.523 42.308 0.00 0.00 0.00 1.90
358 359 6.240549 ACAGAGGGAGTAGTTTCATATTGG 57.759 41.667 0.00 0.00 0.00 3.16
359 360 5.726793 ACAGAGGGAGTAGTTTCATATTGGT 59.273 40.000 0.00 0.00 0.00 3.67
360 361 6.901300 ACAGAGGGAGTAGTTTCATATTGGTA 59.099 38.462 0.00 0.00 0.00 3.25
361 362 7.569111 ACAGAGGGAGTAGTTTCATATTGGTAT 59.431 37.037 0.00 0.00 0.00 2.73
363 364 8.432805 AGAGGGAGTAGTTTCATATTGGTATTG 58.567 37.037 0.00 0.00 0.00 1.90
365 366 9.220906 AGGGAGTAGTTTCATATTGGTATTGTA 57.779 33.333 0.00 0.00 0.00 2.41
366 367 9.490379 GGGAGTAGTTTCATATTGGTATTGTAG 57.510 37.037 0.00 0.00 0.00 2.74
594 838 6.679327 AATTTACTTCTATGAGTTTCGGCC 57.321 37.500 0.00 0.00 0.00 6.13
652 896 5.816919 AGTTGTTGTTTGTTCCTTGATACG 58.183 37.500 0.00 0.00 0.00 3.06
673 917 0.107703 TGCCTCCATGGTGTTCGATC 60.108 55.000 12.58 0.00 38.35 3.69
693 937 3.861840 TCTGCCTACATGCTTTGTACTC 58.138 45.455 0.00 0.00 39.87 2.59
702 946 4.286032 ACATGCTTTGTACTCAGGTCCTTA 59.714 41.667 0.00 0.00 36.57 2.69
711 955 7.914427 TGTACTCAGGTCCTTAATCATACAT 57.086 36.000 0.00 0.00 0.00 2.29
776 1025 2.009108 GTGATCATCACGCACGCAT 58.991 52.632 0.93 0.00 37.67 4.73
860 1147 7.540745 GCAATGATTTTGTACCAACGTAATCTT 59.459 33.333 0.00 0.00 32.98 2.40
863 1150 8.155821 TGATTTTGTACCAACGTAATCTTCAA 57.844 30.769 0.00 0.00 32.98 2.69
951 1245 0.595053 CTACATGGCCGCACGTCTAG 60.595 60.000 0.00 0.00 0.00 2.43
953 1247 1.153647 CATGGCCGCACGTCTAGAA 60.154 57.895 0.00 0.00 0.00 2.10
961 1255 3.241995 GCCGCACGTCTAGAACATTTTAG 60.242 47.826 0.00 0.00 0.00 1.85
1012 1307 4.486090 CTTGCCGCGTCTATATATGAACT 58.514 43.478 4.92 0.00 0.00 3.01
1015 1310 3.681855 CCGCGTCTATATATGAACTCGG 58.318 50.000 4.92 13.09 0.00 4.63
1019 1314 3.099362 GTCTATATATGAACTCGGCGCG 58.901 50.000 0.00 0.00 0.00 6.86
1045 1340 2.806382 GCCATTTCCACACAACCAAAGG 60.806 50.000 0.00 0.00 0.00 3.11
1086 1383 2.261172 ATCTAGCACGCACGCACGTA 62.261 55.000 2.78 0.00 46.34 3.57
1087 1384 2.774951 CTAGCACGCACGCACGTAC 61.775 63.158 2.78 0.00 46.34 3.67
1094 1395 2.050714 CACGCACGTACGGAGTGT 60.051 61.111 21.06 19.93 45.73 3.55
1478 1791 2.519302 AAGGCCTGCTTTGTGCGT 60.519 55.556 5.69 0.00 46.63 5.24
1663 1976 2.158415 CCAGGGGCCACTATTGATGATT 60.158 50.000 7.53 0.00 0.00 2.57
1697 2010 9.569122 TTCCTAAATACTAAAAAGCAACTGAGT 57.431 29.630 0.00 0.00 0.00 3.41
1698 2011 8.999431 TCCTAAATACTAAAAAGCAACTGAGTG 58.001 33.333 0.00 0.00 0.00 3.51
1699 2012 7.750903 CCTAAATACTAAAAAGCAACTGAGTGC 59.249 37.037 0.00 0.00 45.28 4.40
1706 2019 2.408333 GCAACTGAGTGCTGGTTGT 58.592 52.632 0.00 0.00 41.51 3.32
1707 2020 0.308993 GCAACTGAGTGCTGGTTGTC 59.691 55.000 0.00 0.00 41.51 3.18
1708 2021 1.667236 CAACTGAGTGCTGGTTGTCA 58.333 50.000 0.00 0.00 36.55 3.58
1709 2022 1.331756 CAACTGAGTGCTGGTTGTCAC 59.668 52.381 0.00 0.00 36.55 3.67
1710 2023 0.530650 ACTGAGTGCTGGTTGTCACG 60.531 55.000 0.00 0.00 38.19 4.35
1711 2024 0.530650 CTGAGTGCTGGTTGTCACGT 60.531 55.000 0.00 0.00 38.19 4.49
1712 2025 0.107897 TGAGTGCTGGTTGTCACGTT 60.108 50.000 0.00 0.00 38.19 3.99
1713 2026 1.014352 GAGTGCTGGTTGTCACGTTT 58.986 50.000 0.00 0.00 38.19 3.60
1714 2027 1.003866 GAGTGCTGGTTGTCACGTTTC 60.004 52.381 0.00 0.00 38.19 2.78
1715 2028 0.730265 GTGCTGGTTGTCACGTTTCA 59.270 50.000 0.00 0.00 0.00 2.69
1716 2029 1.013596 TGCTGGTTGTCACGTTTCAG 58.986 50.000 0.00 0.00 0.00 3.02
1717 2030 0.317020 GCTGGTTGTCACGTTTCAGC 60.317 55.000 0.00 0.00 40.30 4.26
1718 2031 1.013596 CTGGTTGTCACGTTTCAGCA 58.986 50.000 0.00 0.00 0.00 4.41
1719 2032 0.730265 TGGTTGTCACGTTTCAGCAC 59.270 50.000 0.00 0.00 0.00 4.40
1720 2033 1.014352 GGTTGTCACGTTTCAGCACT 58.986 50.000 0.00 0.00 0.00 4.40
1721 2034 1.003866 GGTTGTCACGTTTCAGCACTC 60.004 52.381 0.00 0.00 0.00 3.51
1722 2035 1.663643 GTTGTCACGTTTCAGCACTCA 59.336 47.619 0.00 0.00 0.00 3.41
1723 2036 1.286501 TGTCACGTTTCAGCACTCAC 58.713 50.000 0.00 0.00 0.00 3.51
1724 2037 0.582005 GTCACGTTTCAGCACTCACC 59.418 55.000 0.00 0.00 0.00 4.02
1725 2038 0.464036 TCACGTTTCAGCACTCACCT 59.536 50.000 0.00 0.00 0.00 4.00
1726 2039 1.134521 TCACGTTTCAGCACTCACCTT 60.135 47.619 0.00 0.00 0.00 3.50
1727 2040 1.670811 CACGTTTCAGCACTCACCTTT 59.329 47.619 0.00 0.00 0.00 3.11
1728 2041 2.097466 CACGTTTCAGCACTCACCTTTT 59.903 45.455 0.00 0.00 0.00 2.27
1729 2042 3.311322 CACGTTTCAGCACTCACCTTTTA 59.689 43.478 0.00 0.00 0.00 1.52
1730 2043 3.560068 ACGTTTCAGCACTCACCTTTTAG 59.440 43.478 0.00 0.00 0.00 1.85
1731 2044 3.607078 CGTTTCAGCACTCACCTTTTAGC 60.607 47.826 0.00 0.00 0.00 3.09
1732 2045 2.928801 TCAGCACTCACCTTTTAGCA 57.071 45.000 0.00 0.00 0.00 3.49
1733 2046 2.494059 TCAGCACTCACCTTTTAGCAC 58.506 47.619 0.00 0.00 0.00 4.40
1734 2047 1.537202 CAGCACTCACCTTTTAGCACC 59.463 52.381 0.00 0.00 0.00 5.01
1735 2048 0.517316 GCACTCACCTTTTAGCACCG 59.483 55.000 0.00 0.00 0.00 4.94
1736 2049 1.878953 CACTCACCTTTTAGCACCGT 58.121 50.000 0.00 0.00 0.00 4.83
1737 2050 1.798813 CACTCACCTTTTAGCACCGTC 59.201 52.381 0.00 0.00 0.00 4.79
1738 2051 1.270678 ACTCACCTTTTAGCACCGTCC 60.271 52.381 0.00 0.00 0.00 4.79
1739 2052 0.320073 TCACCTTTTAGCACCGTCCG 60.320 55.000 0.00 0.00 0.00 4.79
1740 2053 0.320073 CACCTTTTAGCACCGTCCGA 60.320 55.000 0.00 0.00 0.00 4.55
1741 2054 0.611714 ACCTTTTAGCACCGTCCGAT 59.388 50.000 0.00 0.00 0.00 4.18
1742 2055 1.287425 CCTTTTAGCACCGTCCGATC 58.713 55.000 0.00 0.00 0.00 3.69
1743 2056 0.921347 CTTTTAGCACCGTCCGATCG 59.079 55.000 8.51 8.51 0.00 3.69
1757 2070 4.944372 ATCGGCGCGATCGAACCC 62.944 66.667 21.57 13.73 43.45 4.11
1761 2074 4.814294 GCGCGATCGAACCCAGGT 62.814 66.667 21.57 0.00 38.10 4.00
1762 2075 2.802792 CGCGATCGAACCCAGGTA 59.197 61.111 21.57 0.00 38.10 3.08
1763 2076 1.362717 CGCGATCGAACCCAGGTAT 59.637 57.895 21.57 0.00 38.10 2.73
1764 2077 0.249322 CGCGATCGAACCCAGGTATT 60.249 55.000 21.57 0.00 38.10 1.89
1765 2078 1.499049 GCGATCGAACCCAGGTATTC 58.501 55.000 21.57 0.00 0.00 1.75
1766 2079 1.872653 GCGATCGAACCCAGGTATTCC 60.873 57.143 21.57 0.00 0.00 3.01
1767 2080 1.687123 CGATCGAACCCAGGTATTCCT 59.313 52.381 10.26 0.00 46.37 3.36
1776 2089 2.912020 AGGTATTCCTGGTCGGGAC 58.088 57.895 0.00 0.00 43.33 4.46
1793 2106 2.412112 CGATCGGTTCGTCCTCCC 59.588 66.667 7.38 0.00 43.01 4.30
1794 2107 2.813200 GATCGGTTCGTCCTCCCC 59.187 66.667 0.00 0.00 0.00 4.81
1795 2108 2.762875 ATCGGTTCGTCCTCCCCC 60.763 66.667 0.00 0.00 0.00 5.40
1809 2122 2.582436 CCCCCGCTGACACGTATT 59.418 61.111 0.00 0.00 0.00 1.89
1810 2123 1.520787 CCCCCGCTGACACGTATTC 60.521 63.158 0.00 0.00 0.00 1.75
1811 2124 1.216977 CCCCGCTGACACGTATTCA 59.783 57.895 0.00 0.00 0.00 2.57
1812 2125 1.082117 CCCCGCTGACACGTATTCAC 61.082 60.000 0.00 0.00 0.00 3.18
1813 2126 1.082117 CCCGCTGACACGTATTCACC 61.082 60.000 0.00 0.00 0.00 4.02
1814 2127 0.108804 CCGCTGACACGTATTCACCT 60.109 55.000 0.00 0.00 0.00 4.00
1815 2128 0.992072 CGCTGACACGTATTCACCTG 59.008 55.000 0.00 0.00 0.00 4.00
1816 2129 1.359848 GCTGACACGTATTCACCTGG 58.640 55.000 0.00 0.00 0.00 4.45
1817 2130 1.067142 GCTGACACGTATTCACCTGGA 60.067 52.381 0.00 0.00 0.00 3.86
1818 2131 2.881074 CTGACACGTATTCACCTGGAG 58.119 52.381 0.00 0.00 0.00 3.86
1819 2132 1.548719 TGACACGTATTCACCTGGAGG 59.451 52.381 0.00 0.00 42.17 4.30
1820 2133 0.249398 ACACGTATTCACCTGGAGGC 59.751 55.000 0.00 0.00 39.32 4.70
1821 2134 0.462047 CACGTATTCACCTGGAGGCC 60.462 60.000 0.00 0.00 39.32 5.19
1822 2135 1.146263 CGTATTCACCTGGAGGCCC 59.854 63.158 0.00 0.00 39.32 5.80
1823 2136 1.622607 CGTATTCACCTGGAGGCCCA 61.623 60.000 0.00 0.00 40.95 5.36
1824 2137 0.107165 GTATTCACCTGGAGGCCCAC 60.107 60.000 0.00 0.00 37.58 4.61
1825 2138 1.279025 TATTCACCTGGAGGCCCACC 61.279 60.000 0.00 3.98 37.58 4.61
1826 2139 3.963640 TATTCACCTGGAGGCCCACCA 62.964 57.143 16.81 16.81 37.58 4.17
1827 2140 4.351054 CACCTGGAGGCCCACCAC 62.351 72.222 14.29 0.00 37.58 4.16
1828 2141 4.599500 ACCTGGAGGCCCACCACT 62.599 66.667 14.29 1.54 37.58 4.00
1829 2142 2.285368 CCTGGAGGCCCACCACTA 60.285 66.667 14.29 0.00 37.58 2.74
1830 2143 2.670148 CCTGGAGGCCCACCACTAC 61.670 68.421 14.29 0.00 37.58 2.73
1831 2144 2.609610 TGGAGGCCCACCACTACC 60.610 66.667 14.29 0.02 37.58 3.18
1832 2145 3.408853 GGAGGCCCACCACTACCC 61.409 72.222 11.18 0.00 39.06 3.69
1833 2146 2.609610 GAGGCCCACCACTACCCA 60.610 66.667 0.00 0.00 39.06 4.51
1834 2147 2.933834 AGGCCCACCACTACCCAC 60.934 66.667 0.00 0.00 39.06 4.61
1835 2148 4.404098 GGCCCACCACTACCCACG 62.404 72.222 0.00 0.00 35.26 4.94
1837 2150 4.752879 CCCACCACTACCCACGCG 62.753 72.222 3.53 3.53 0.00 6.01
1856 2169 4.003788 CCCGTCCGTTGCCTCACT 62.004 66.667 0.00 0.00 0.00 3.41
1857 2170 2.738521 CCGTCCGTTGCCTCACTG 60.739 66.667 0.00 0.00 0.00 3.66
1858 2171 2.029073 CGTCCGTTGCCTCACTGT 59.971 61.111 0.00 0.00 0.00 3.55
1859 2172 1.594293 CGTCCGTTGCCTCACTGTT 60.594 57.895 0.00 0.00 0.00 3.16
1860 2173 1.157870 CGTCCGTTGCCTCACTGTTT 61.158 55.000 0.00 0.00 0.00 2.83
1861 2174 0.586802 GTCCGTTGCCTCACTGTTTC 59.413 55.000 0.00 0.00 0.00 2.78
1862 2175 0.878523 TCCGTTGCCTCACTGTTTCG 60.879 55.000 0.00 0.00 0.00 3.46
1863 2176 0.878523 CCGTTGCCTCACTGTTTCGA 60.879 55.000 0.00 0.00 0.00 3.71
1864 2177 0.934496 CGTTGCCTCACTGTTTCGAA 59.066 50.000 0.00 0.00 0.00 3.71
1865 2178 1.329292 CGTTGCCTCACTGTTTCGAAA 59.671 47.619 6.47 6.47 0.00 3.46
1866 2179 2.599848 CGTTGCCTCACTGTTTCGAAAG 60.600 50.000 11.66 2.71 0.00 2.62
1867 2180 0.944386 TGCCTCACTGTTTCGAAAGC 59.056 50.000 11.66 9.82 0.00 3.51
1868 2181 1.230324 GCCTCACTGTTTCGAAAGCT 58.770 50.000 11.66 0.00 0.00 3.74
1869 2182 1.195674 GCCTCACTGTTTCGAAAGCTC 59.804 52.381 11.66 0.00 0.00 4.09
1870 2183 2.760374 CCTCACTGTTTCGAAAGCTCT 58.240 47.619 11.66 0.00 0.00 4.09
1871 2184 3.861131 GCCTCACTGTTTCGAAAGCTCTA 60.861 47.826 11.66 0.00 0.00 2.43
1872 2185 3.923461 CCTCACTGTTTCGAAAGCTCTAG 59.077 47.826 11.66 6.67 0.00 2.43
1873 2186 4.551388 CTCACTGTTTCGAAAGCTCTAGT 58.449 43.478 11.66 8.12 0.00 2.57
1874 2187 4.299155 TCACTGTTTCGAAAGCTCTAGTG 58.701 43.478 11.66 18.11 36.53 2.74
1875 2188 3.430218 CACTGTTTCGAAAGCTCTAGTGG 59.570 47.826 11.66 3.55 32.77 4.00
1876 2189 3.069729 ACTGTTTCGAAAGCTCTAGTGGT 59.930 43.478 11.66 0.00 0.00 4.16
1877 2190 4.280174 ACTGTTTCGAAAGCTCTAGTGGTA 59.720 41.667 11.66 0.00 0.00 3.25
1878 2191 4.806330 TGTTTCGAAAGCTCTAGTGGTAG 58.194 43.478 11.66 0.00 0.00 3.18
1879 2192 4.280174 TGTTTCGAAAGCTCTAGTGGTAGT 59.720 41.667 11.66 0.00 0.00 2.73
1880 2193 4.436242 TTCGAAAGCTCTAGTGGTAGTG 57.564 45.455 0.00 0.00 0.00 2.74
1881 2194 2.163815 TCGAAAGCTCTAGTGGTAGTGC 59.836 50.000 0.00 0.00 43.34 4.40
1885 2198 1.475403 GCTCTAGTGGTAGTGCTGGA 58.525 55.000 0.00 0.00 40.93 3.86
1886 2199 1.407258 GCTCTAGTGGTAGTGCTGGAG 59.593 57.143 0.00 0.00 40.93 3.86
1887 2200 2.028130 CTCTAGTGGTAGTGCTGGAGG 58.972 57.143 0.00 0.00 36.90 4.30
1888 2201 0.461961 CTAGTGGTAGTGCTGGAGGC 59.538 60.000 0.00 0.00 42.22 4.70
1889 2202 0.976073 TAGTGGTAGTGCTGGAGGCC 60.976 60.000 0.00 0.00 40.92 5.19
1890 2203 3.009115 TGGTAGTGCTGGAGGCCC 61.009 66.667 0.00 0.00 40.92 5.80
1891 2204 3.009115 GGTAGTGCTGGAGGCCCA 61.009 66.667 0.00 0.00 40.95 5.36
1892 2205 2.269241 GTAGTGCTGGAGGCCCAC 59.731 66.667 0.00 0.00 37.58 4.61
1893 2206 3.009115 TAGTGCTGGAGGCCCACC 61.009 66.667 0.00 3.98 37.58 4.61
1894 2207 3.863114 TAGTGCTGGAGGCCCACCA 62.863 63.158 16.81 16.81 37.58 4.17
1897 2210 3.009115 GCTGGAGGCCCACCACTA 61.009 66.667 14.29 0.00 37.58 2.74
1898 2211 2.990479 CTGGAGGCCCACCACTAC 59.010 66.667 14.29 0.00 37.58 2.73
1899 2212 2.609610 TGGAGGCCCACCACTACC 60.610 66.667 14.29 0.02 37.58 3.18
1900 2213 3.408853 GGAGGCCCACCACTACCC 61.409 72.222 11.18 0.00 39.06 3.69
1901 2214 2.609610 GAGGCCCACCACTACCCA 60.610 66.667 0.00 0.00 39.06 4.51
1902 2215 2.933834 AGGCCCACCACTACCCAC 60.934 66.667 0.00 0.00 39.06 4.61
1903 2216 4.404098 GGCCCACCACTACCCACG 62.404 72.222 0.00 0.00 35.26 4.94
1905 2218 4.752879 CCCACCACTACCCACGCG 62.753 72.222 3.53 3.53 0.00 6.01
1924 2237 4.003788 CCCGTCCGTTGCCTCACT 62.004 66.667 0.00 0.00 0.00 3.41
1925 2238 2.738521 CCGTCCGTTGCCTCACTG 60.739 66.667 0.00 0.00 0.00 3.66
1926 2239 2.029073 CGTCCGTTGCCTCACTGT 59.971 61.111 0.00 0.00 0.00 3.55
1927 2240 1.594293 CGTCCGTTGCCTCACTGTT 60.594 57.895 0.00 0.00 0.00 3.16
1928 2241 1.157870 CGTCCGTTGCCTCACTGTTT 61.158 55.000 0.00 0.00 0.00 2.83
1929 2242 1.021968 GTCCGTTGCCTCACTGTTTT 58.978 50.000 0.00 0.00 0.00 2.43
1930 2243 1.404035 GTCCGTTGCCTCACTGTTTTT 59.596 47.619 0.00 0.00 0.00 1.94
1931 2244 1.673920 TCCGTTGCCTCACTGTTTTTC 59.326 47.619 0.00 0.00 0.00 2.29
1932 2245 1.403679 CCGTTGCCTCACTGTTTTTCA 59.596 47.619 0.00 0.00 0.00 2.69
1949 2262 9.962759 CTGTTTTTCAGTTGATCTTTTTCAAAG 57.037 29.630 0.00 0.00 37.36 2.77
1950 2263 8.442384 TGTTTTTCAGTTGATCTTTTTCAAAGC 58.558 29.630 0.00 0.00 37.36 3.51
1951 2264 8.659491 GTTTTTCAGTTGATCTTTTTCAAAGCT 58.341 29.630 0.00 0.00 37.36 3.74
1952 2265 7.992180 TTTCAGTTGATCTTTTTCAAAGCTC 57.008 32.000 0.00 0.00 37.36 4.09
1953 2266 6.949352 TCAGTTGATCTTTTTCAAAGCTCT 57.051 33.333 0.00 0.00 37.36 4.09
1954 2267 8.450578 TTCAGTTGATCTTTTTCAAAGCTCTA 57.549 30.769 0.00 0.00 37.36 2.43
1955 2268 8.092521 TCAGTTGATCTTTTTCAAAGCTCTAG 57.907 34.615 0.00 0.00 37.36 2.43
1956 2269 7.716998 TCAGTTGATCTTTTTCAAAGCTCTAGT 59.283 33.333 0.00 0.00 37.36 2.57
1957 2270 7.802251 CAGTTGATCTTTTTCAAAGCTCTAGTG 59.198 37.037 0.00 5.54 37.36 2.74
1958 2271 7.500559 AGTTGATCTTTTTCAAAGCTCTAGTGT 59.499 33.333 0.00 0.00 37.36 3.55
1959 2272 7.807977 TGATCTTTTTCAAAGCTCTAGTGTT 57.192 32.000 0.00 0.00 0.00 3.32
1960 2273 8.225603 TGATCTTTTTCAAAGCTCTAGTGTTT 57.774 30.769 0.00 0.00 0.00 2.83
1961 2274 8.345565 TGATCTTTTTCAAAGCTCTAGTGTTTC 58.654 33.333 0.00 0.00 0.00 2.78
1962 2275 7.624360 TCTTTTTCAAAGCTCTAGTGTTTCA 57.376 32.000 0.00 0.00 0.00 2.69
1963 2276 7.697691 TCTTTTTCAAAGCTCTAGTGTTTCAG 58.302 34.615 0.00 0.00 0.00 3.02
1964 2277 7.552687 TCTTTTTCAAAGCTCTAGTGTTTCAGA 59.447 33.333 0.00 0.00 0.00 3.27
1965 2278 7.807977 TTTTCAAAGCTCTAGTGTTTCAGAT 57.192 32.000 0.00 0.00 0.00 2.90
1966 2279 7.426929 TTTCAAAGCTCTAGTGTTTCAGATC 57.573 36.000 0.00 0.00 0.00 2.75
1967 2280 5.482908 TCAAAGCTCTAGTGTTTCAGATCC 58.517 41.667 0.00 0.00 0.00 3.36
1968 2281 5.012046 TCAAAGCTCTAGTGTTTCAGATCCA 59.988 40.000 0.00 0.00 0.00 3.41
1969 2282 5.690464 AAGCTCTAGTGTTTCAGATCCAT 57.310 39.130 0.00 0.00 0.00 3.41
1970 2283 5.021033 AGCTCTAGTGTTTCAGATCCATG 57.979 43.478 0.00 0.00 0.00 3.66
1971 2284 4.125703 GCTCTAGTGTTTCAGATCCATGG 58.874 47.826 4.97 4.97 0.00 3.66
1972 2285 4.125703 CTCTAGTGTTTCAGATCCATGGC 58.874 47.826 6.96 0.00 0.00 4.40
1973 2286 1.742761 AGTGTTTCAGATCCATGGCG 58.257 50.000 6.96 0.00 0.00 5.69
1974 2287 1.278985 AGTGTTTCAGATCCATGGCGA 59.721 47.619 6.96 0.00 0.00 5.54
1975 2288 2.092753 AGTGTTTCAGATCCATGGCGAT 60.093 45.455 6.96 0.00 0.00 4.58
1976 2289 2.032550 GTGTTTCAGATCCATGGCGATG 59.967 50.000 6.96 5.20 0.00 3.84
1977 2290 2.292267 GTTTCAGATCCATGGCGATGT 58.708 47.619 6.96 0.00 0.00 3.06
1978 2291 1.957668 TTCAGATCCATGGCGATGTG 58.042 50.000 6.96 5.52 35.41 3.21
1979 2292 0.832626 TCAGATCCATGGCGATGTGT 59.167 50.000 6.96 0.00 35.56 3.72
1980 2293 2.038659 TCAGATCCATGGCGATGTGTA 58.961 47.619 6.96 0.00 35.56 2.90
1981 2294 2.036346 TCAGATCCATGGCGATGTGTAG 59.964 50.000 6.96 0.00 35.56 2.74
1982 2295 1.345741 AGATCCATGGCGATGTGTAGG 59.654 52.381 6.96 0.00 0.00 3.18
1983 2296 0.250467 ATCCATGGCGATGTGTAGGC 60.250 55.000 6.96 0.00 0.00 3.93
1984 2297 1.153188 CCATGGCGATGTGTAGGCA 60.153 57.895 7.98 0.00 46.75 4.75
1985 2298 1.162181 CCATGGCGATGTGTAGGCAG 61.162 60.000 7.98 0.00 45.93 4.85
1986 2299 1.146930 ATGGCGATGTGTAGGCAGG 59.853 57.895 0.00 0.00 45.93 4.85
1987 2300 1.337384 ATGGCGATGTGTAGGCAGGA 61.337 55.000 0.00 0.00 45.93 3.86
1988 2301 1.227380 GGCGATGTGTAGGCAGGAG 60.227 63.158 0.00 0.00 0.00 3.69
1989 2302 1.227380 GCGATGTGTAGGCAGGAGG 60.227 63.158 0.00 0.00 0.00 4.30
1990 2303 1.961180 GCGATGTGTAGGCAGGAGGT 61.961 60.000 0.00 0.00 0.00 3.85
1991 2304 0.537188 CGATGTGTAGGCAGGAGGTT 59.463 55.000 0.00 0.00 0.00 3.50
1992 2305 1.066143 CGATGTGTAGGCAGGAGGTTT 60.066 52.381 0.00 0.00 0.00 3.27
1993 2306 2.633488 GATGTGTAGGCAGGAGGTTTC 58.367 52.381 0.00 0.00 0.00 2.78
1994 2307 0.690762 TGTGTAGGCAGGAGGTTTCC 59.309 55.000 0.00 0.00 44.39 3.13
2004 2317 1.665137 GGAGGTTTCCTTGGGGTAGA 58.335 55.000 0.00 0.00 40.58 2.59
2005 2318 1.990327 GGAGGTTTCCTTGGGGTAGAA 59.010 52.381 0.00 0.00 40.58 2.10
2006 2319 2.026169 GGAGGTTTCCTTGGGGTAGAAG 60.026 54.545 0.00 0.00 40.58 2.85
2007 2320 2.910977 GAGGTTTCCTTGGGGTAGAAGA 59.089 50.000 0.00 0.00 31.76 2.87
2008 2321 3.329814 GAGGTTTCCTTGGGGTAGAAGAA 59.670 47.826 0.00 0.00 31.76 2.52
2009 2322 3.330998 AGGTTTCCTTGGGGTAGAAGAAG 59.669 47.826 0.00 0.00 0.00 2.85
2010 2323 3.561528 GGTTTCCTTGGGGTAGAAGAAGG 60.562 52.174 0.00 0.00 36.99 3.46
2011 2324 1.966845 TCCTTGGGGTAGAAGAAGGG 58.033 55.000 0.00 0.00 36.41 3.95
2012 2325 0.919710 CCTTGGGGTAGAAGAAGGGG 59.080 60.000 0.00 0.00 32.73 4.79
2013 2326 1.557188 CCTTGGGGTAGAAGAAGGGGA 60.557 57.143 0.00 0.00 32.73 4.81
2014 2327 1.840635 CTTGGGGTAGAAGAAGGGGAG 59.159 57.143 0.00 0.00 0.00 4.30
2015 2328 1.098589 TGGGGTAGAAGAAGGGGAGA 58.901 55.000 0.00 0.00 0.00 3.71
2016 2329 1.657162 TGGGGTAGAAGAAGGGGAGAT 59.343 52.381 0.00 0.00 0.00 2.75
2017 2330 2.047296 TGGGGTAGAAGAAGGGGAGATT 59.953 50.000 0.00 0.00 0.00 2.40
2018 2331 3.124066 GGGGTAGAAGAAGGGGAGATTT 58.876 50.000 0.00 0.00 0.00 2.17
2019 2332 3.117851 GGGGTAGAAGAAGGGGAGATTTG 60.118 52.174 0.00 0.00 0.00 2.32
2020 2333 3.117851 GGGTAGAAGAAGGGGAGATTTGG 60.118 52.174 0.00 0.00 0.00 3.28
2021 2334 3.117851 GGTAGAAGAAGGGGAGATTTGGG 60.118 52.174 0.00 0.00 0.00 4.12
2022 2335 1.925959 AGAAGAAGGGGAGATTTGGGG 59.074 52.381 0.00 0.00 0.00 4.96
2023 2336 1.010795 AAGAAGGGGAGATTTGGGGG 58.989 55.000 0.00 0.00 0.00 5.40
2024 2337 0.123266 AGAAGGGGAGATTTGGGGGA 59.877 55.000 0.00 0.00 0.00 4.81
2025 2338 0.553333 GAAGGGGAGATTTGGGGGAG 59.447 60.000 0.00 0.00 0.00 4.30
2026 2339 0.123266 AAGGGGAGATTTGGGGGAGA 59.877 55.000 0.00 0.00 0.00 3.71
2027 2340 0.123266 AGGGGAGATTTGGGGGAGAA 59.877 55.000 0.00 0.00 0.00 2.87
2028 2341 0.553333 GGGGAGATTTGGGGGAGAAG 59.447 60.000 0.00 0.00 0.00 2.85
2029 2342 0.553333 GGGAGATTTGGGGGAGAAGG 59.447 60.000 0.00 0.00 0.00 3.46
2030 2343 1.299939 GGAGATTTGGGGGAGAAGGT 58.700 55.000 0.00 0.00 0.00 3.50
2031 2344 1.064389 GGAGATTTGGGGGAGAAGGTG 60.064 57.143 0.00 0.00 0.00 4.00
2032 2345 1.002857 AGATTTGGGGGAGAAGGTGG 58.997 55.000 0.00 0.00 0.00 4.61
2033 2346 0.999712 GATTTGGGGGAGAAGGTGGA 59.000 55.000 0.00 0.00 0.00 4.02
2034 2347 1.002857 ATTTGGGGGAGAAGGTGGAG 58.997 55.000 0.00 0.00 0.00 3.86
2035 2348 0.104144 TTTGGGGGAGAAGGTGGAGA 60.104 55.000 0.00 0.00 0.00 3.71
2036 2349 0.547712 TTGGGGGAGAAGGTGGAGAG 60.548 60.000 0.00 0.00 0.00 3.20
2037 2350 1.392534 GGGGGAGAAGGTGGAGAGA 59.607 63.158 0.00 0.00 0.00 3.10
2038 2351 0.252742 GGGGGAGAAGGTGGAGAGAA 60.253 60.000 0.00 0.00 0.00 2.87
2039 2352 1.626631 GGGGGAGAAGGTGGAGAGAAT 60.627 57.143 0.00 0.00 0.00 2.40
2040 2353 1.488393 GGGGAGAAGGTGGAGAGAATG 59.512 57.143 0.00 0.00 0.00 2.67
2041 2354 1.488393 GGGAGAAGGTGGAGAGAATGG 59.512 57.143 0.00 0.00 0.00 3.16
2042 2355 2.192263 GGAGAAGGTGGAGAGAATGGT 58.808 52.381 0.00 0.00 0.00 3.55
2043 2356 2.573915 GGAGAAGGTGGAGAGAATGGTT 59.426 50.000 0.00 0.00 0.00 3.67
2044 2357 3.369997 GGAGAAGGTGGAGAGAATGGTTC 60.370 52.174 0.00 0.00 0.00 3.62
2045 2358 2.573915 AGAAGGTGGAGAGAATGGTTCC 59.426 50.000 0.00 0.00 0.00 3.62
2046 2359 2.350863 AGGTGGAGAGAATGGTTCCT 57.649 50.000 0.00 0.00 32.12 3.36
2047 2360 2.637165 AGGTGGAGAGAATGGTTCCTT 58.363 47.619 0.00 0.00 32.12 3.36
2048 2361 2.307098 AGGTGGAGAGAATGGTTCCTTG 59.693 50.000 0.00 0.00 32.12 3.61
2049 2362 2.619074 GGTGGAGAGAATGGTTCCTTGG 60.619 54.545 0.00 0.00 32.12 3.61
2050 2363 1.635487 TGGAGAGAATGGTTCCTTGGG 59.365 52.381 0.00 0.00 32.12 4.12
2051 2364 1.064389 GGAGAGAATGGTTCCTTGGGG 60.064 57.143 0.00 0.00 0.00 4.96
2052 2365 1.002857 AGAGAATGGTTCCTTGGGGG 58.997 55.000 0.00 0.00 0.00 5.40
2053 2366 0.999712 GAGAATGGTTCCTTGGGGGA 59.000 55.000 0.00 0.00 43.41 4.81
2054 2367 1.002857 AGAATGGTTCCTTGGGGGAG 58.997 55.000 0.00 0.00 46.01 4.30
2055 2368 0.999712 GAATGGTTCCTTGGGGGAGA 59.000 55.000 0.00 0.00 46.01 3.71
2056 2369 1.357761 GAATGGTTCCTTGGGGGAGAA 59.642 52.381 0.00 0.00 46.01 2.87
2057 2370 1.002857 ATGGTTCCTTGGGGGAGAAG 58.997 55.000 0.00 0.00 46.01 2.85
2058 2371 1.140134 TGGTTCCTTGGGGGAGAAGG 61.140 60.000 0.00 0.00 46.01 3.46
2059 2372 0.845102 GGTTCCTTGGGGGAGAAGGA 60.845 60.000 0.00 0.00 45.99 3.36
2060 2373 1.299939 GTTCCTTGGGGGAGAAGGAT 58.700 55.000 0.00 0.00 46.69 3.24
2061 2374 1.064389 GTTCCTTGGGGGAGAAGGATG 60.064 57.143 0.00 0.00 46.69 3.51
2062 2375 0.624500 TCCTTGGGGGAGAAGGATGG 60.625 60.000 0.00 0.00 43.39 3.51
2063 2376 1.649271 CCTTGGGGGAGAAGGATGGG 61.649 65.000 0.00 0.00 42.44 4.00
2064 2377 1.622442 TTGGGGGAGAAGGATGGGG 60.622 63.158 0.00 0.00 0.00 4.96
2065 2378 3.502875 GGGGGAGAAGGATGGGGC 61.503 72.222 0.00 0.00 0.00 5.80
2066 2379 2.696125 GGGGAGAAGGATGGGGCA 60.696 66.667 0.00 0.00 0.00 5.36
2067 2380 2.761465 GGGGAGAAGGATGGGGCAG 61.761 68.421 0.00 0.00 0.00 4.85
2068 2381 1.694169 GGGAGAAGGATGGGGCAGA 60.694 63.158 0.00 0.00 0.00 4.26
2069 2382 1.704007 GGGAGAAGGATGGGGCAGAG 61.704 65.000 0.00 0.00 0.00 3.35
2070 2383 0.692419 GGAGAAGGATGGGGCAGAGA 60.692 60.000 0.00 0.00 0.00 3.10
2071 2384 0.758123 GAGAAGGATGGGGCAGAGAG 59.242 60.000 0.00 0.00 0.00 3.20
2072 2385 0.693767 AGAAGGATGGGGCAGAGAGG 60.694 60.000 0.00 0.00 0.00 3.69
2073 2386 1.695597 AAGGATGGGGCAGAGAGGG 60.696 63.158 0.00 0.00 0.00 4.30
2074 2387 2.040464 GGATGGGGCAGAGAGGGA 60.040 66.667 0.00 0.00 0.00 4.20
2075 2388 2.146061 GGATGGGGCAGAGAGGGAG 61.146 68.421 0.00 0.00 0.00 4.30
2076 2389 2.040043 ATGGGGCAGAGAGGGAGG 60.040 66.667 0.00 0.00 0.00 4.30
2077 2390 3.728305 ATGGGGCAGAGAGGGAGGG 62.728 68.421 0.00 0.00 0.00 4.30
2079 2392 4.095400 GGGCAGAGAGGGAGGGGA 62.095 72.222 0.00 0.00 0.00 4.81
2080 2393 2.041265 GGCAGAGAGGGAGGGGAA 59.959 66.667 0.00 0.00 0.00 3.97
2081 2394 2.371259 GGCAGAGAGGGAGGGGAAC 61.371 68.421 0.00 0.00 0.00 3.62
2094 2407 3.960237 GGAACCACGTGATTGCGA 58.040 55.556 19.30 0.00 35.59 5.10
2095 2408 2.466867 GGAACCACGTGATTGCGAT 58.533 52.632 19.30 0.00 35.59 4.58
2096 2409 0.096976 GGAACCACGTGATTGCGATG 59.903 55.000 19.30 0.00 35.59 3.84
2097 2410 0.096976 GAACCACGTGATTGCGATGG 59.903 55.000 19.30 0.00 38.25 3.51
2098 2411 1.305219 AACCACGTGATTGCGATGGG 61.305 55.000 19.30 0.00 37.36 4.00
2099 2412 1.449423 CCACGTGATTGCGATGGGA 60.449 57.895 19.30 0.00 33.05 4.37
2100 2413 1.431488 CCACGTGATTGCGATGGGAG 61.431 60.000 19.30 0.00 33.05 4.30
2101 2414 1.153369 ACGTGATTGCGATGGGAGG 60.153 57.895 0.00 0.00 35.59 4.30
2102 2415 1.889105 CGTGATTGCGATGGGAGGG 60.889 63.158 0.00 0.00 0.00 4.30
2103 2416 1.526917 GTGATTGCGATGGGAGGGG 60.527 63.158 0.00 0.00 0.00 4.79
2104 2417 2.595754 GATTGCGATGGGAGGGGC 60.596 66.667 0.00 0.00 0.00 5.80
2105 2418 4.569180 ATTGCGATGGGAGGGGCG 62.569 66.667 0.00 0.00 0.00 6.13
2110 2423 4.506255 GATGGGAGGGGCGGGTTG 62.506 72.222 0.00 0.00 0.00 3.77
2118 2431 3.787001 GGGCGGGTTGGAGGAGAG 61.787 72.222 0.00 0.00 0.00 3.20
2119 2432 2.683933 GGCGGGTTGGAGGAGAGA 60.684 66.667 0.00 0.00 0.00 3.10
2120 2433 2.066999 GGCGGGTTGGAGGAGAGAT 61.067 63.158 0.00 0.00 0.00 2.75
2121 2434 1.144936 GCGGGTTGGAGGAGAGATG 59.855 63.158 0.00 0.00 0.00 2.90
2122 2435 1.826024 CGGGTTGGAGGAGAGATGG 59.174 63.158 0.00 0.00 0.00 3.51
2123 2436 0.978146 CGGGTTGGAGGAGAGATGGT 60.978 60.000 0.00 0.00 0.00 3.55
2124 2437 0.543749 GGGTTGGAGGAGAGATGGTG 59.456 60.000 0.00 0.00 0.00 4.17
2125 2438 0.543749 GGTTGGAGGAGAGATGGTGG 59.456 60.000 0.00 0.00 0.00 4.61
2126 2439 0.107459 GTTGGAGGAGAGATGGTGGC 60.107 60.000 0.00 0.00 0.00 5.01
2127 2440 1.274703 TTGGAGGAGAGATGGTGGCC 61.275 60.000 0.00 0.00 0.00 5.36
2128 2441 1.690633 GGAGGAGAGATGGTGGCCA 60.691 63.158 0.00 0.00 38.19 5.36
2129 2442 1.524482 GAGGAGAGATGGTGGCCAC 59.476 63.158 28.57 28.57 35.80 5.01
2139 2452 2.048127 GTGGCCACCAGTCTCGTC 60.048 66.667 26.31 0.00 32.34 4.20
2140 2453 3.311110 TGGCCACCAGTCTCGTCC 61.311 66.667 0.00 0.00 0.00 4.79
2141 2454 2.997897 GGCCACCAGTCTCGTCCT 60.998 66.667 0.00 0.00 0.00 3.85
2142 2455 2.574399 GCCACCAGTCTCGTCCTC 59.426 66.667 0.00 0.00 0.00 3.71
2143 2456 3.007973 GCCACCAGTCTCGTCCTCC 62.008 68.421 0.00 0.00 0.00 4.30
2144 2457 2.352032 CCACCAGTCTCGTCCTCCC 61.352 68.421 0.00 0.00 0.00 4.30
2145 2458 1.606601 CACCAGTCTCGTCCTCCCA 60.607 63.158 0.00 0.00 0.00 4.37
2146 2459 0.972983 CACCAGTCTCGTCCTCCCAT 60.973 60.000 0.00 0.00 0.00 4.00
2147 2460 0.684805 ACCAGTCTCGTCCTCCCATC 60.685 60.000 0.00 0.00 0.00 3.51
2148 2461 1.729470 CCAGTCTCGTCCTCCCATCG 61.729 65.000 0.00 0.00 0.00 3.84
2149 2462 2.122167 AGTCTCGTCCTCCCATCGC 61.122 63.158 0.00 0.00 0.00 4.58
2150 2463 3.209812 TCTCGTCCTCCCATCGCG 61.210 66.667 0.00 0.00 0.00 5.87
2151 2464 4.271816 CTCGTCCTCCCATCGCGG 62.272 72.222 6.13 0.00 0.00 6.46
2160 2473 4.969196 CCATCGCGGGTGGGATCG 62.969 72.222 19.62 0.00 45.12 3.69
2640 2953 1.691823 CCTTCTCCCCCAAGGAACC 59.308 63.158 0.00 0.00 46.94 3.62
2641 2954 1.140134 CCTTCTCCCCCAAGGAACCA 61.140 60.000 0.00 0.00 46.94 3.67
2642 2955 1.002857 CTTCTCCCCCAAGGAACCAT 58.997 55.000 0.00 0.00 46.94 3.55
2643 2956 1.359130 CTTCTCCCCCAAGGAACCATT 59.641 52.381 0.00 0.00 46.94 3.16
2644 2957 0.999712 TCTCCCCCAAGGAACCATTC 59.000 55.000 0.00 0.00 46.94 2.67
2645 2958 1.002857 CTCCCCCAAGGAACCATTCT 58.997 55.000 0.00 0.00 46.94 2.40
2646 2959 0.999712 TCCCCCAAGGAACCATTCTC 59.000 55.000 0.00 0.00 43.78 2.87
2647 2960 1.002857 CCCCCAAGGAACCATTCTCT 58.997 55.000 0.00 0.00 38.24 3.10
2648 2961 1.064389 CCCCCAAGGAACCATTCTCTC 60.064 57.143 0.00 0.00 38.24 3.20
2649 2962 1.064389 CCCCAAGGAACCATTCTCTCC 60.064 57.143 0.00 0.00 33.47 3.71
2650 2963 1.635487 CCCAAGGAACCATTCTCTCCA 59.365 52.381 0.00 0.00 0.00 3.86
2651 2964 2.619074 CCCAAGGAACCATTCTCTCCAC 60.619 54.545 0.00 0.00 0.00 4.02
2652 2965 2.619074 CCAAGGAACCATTCTCTCCACC 60.619 54.545 0.00 0.00 0.00 4.61
2653 2966 2.307098 CAAGGAACCATTCTCTCCACCT 59.693 50.000 0.00 0.00 0.00 4.00
2654 2967 2.637165 AGGAACCATTCTCTCCACCTT 58.363 47.619 0.00 0.00 0.00 3.50
2655 2968 2.573915 AGGAACCATTCTCTCCACCTTC 59.426 50.000 0.00 0.00 0.00 3.46
2656 2969 2.573915 GGAACCATTCTCTCCACCTTCT 59.426 50.000 0.00 0.00 0.00 2.85
2657 2970 3.369997 GGAACCATTCTCTCCACCTTCTC 60.370 52.174 0.00 0.00 0.00 2.87
2658 2971 2.192263 ACCATTCTCTCCACCTTCTCC 58.808 52.381 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 9.684448 CTATATGCACTATATTATGGAACGGAG 57.316 37.037 0.00 0.00 33.96 4.63
144 145 3.881089 AGGTTGTAGGGTTTGACTTTTCG 59.119 43.478 0.00 0.00 0.00 3.46
164 165 7.665561 TTTTCTTCAAAAACTTGGTCAAAGG 57.334 32.000 0.00 0.00 40.51 3.11
182 183 7.814587 GGCATTCTAGCTGTAAATGTTTTTCTT 59.185 33.333 14.93 0.00 33.82 2.52
242 243 3.521947 AGTAATTCCGAACGAAGGGAG 57.478 47.619 0.00 0.00 32.78 4.30
243 244 4.019174 ACTAGTAATTCCGAACGAAGGGA 58.981 43.478 0.00 0.00 32.78 4.20
244 245 4.097589 AGACTAGTAATTCCGAACGAAGGG 59.902 45.833 0.00 0.00 32.78 3.95
245 246 5.246145 AGACTAGTAATTCCGAACGAAGG 57.754 43.478 0.00 0.00 32.78 3.46
246 247 4.962751 CGAGACTAGTAATTCCGAACGAAG 59.037 45.833 0.00 0.00 32.78 3.79
247 248 4.631377 TCGAGACTAGTAATTCCGAACGAA 59.369 41.667 0.00 0.00 34.14 3.85
248 249 4.183865 TCGAGACTAGTAATTCCGAACGA 58.816 43.478 0.00 0.00 0.00 3.85
249 250 4.526970 TCGAGACTAGTAATTCCGAACG 57.473 45.455 0.00 0.00 0.00 3.95
250 251 7.752557 ATTTTCGAGACTAGTAATTCCGAAC 57.247 36.000 13.21 0.00 34.86 3.95
251 252 8.896744 TCTATTTTCGAGACTAGTAATTCCGAA 58.103 33.333 0.00 4.45 33.57 4.30
252 253 8.442632 TCTATTTTCGAGACTAGTAATTCCGA 57.557 34.615 0.00 0.00 0.00 4.55
253 254 9.119329 CATCTATTTTCGAGACTAGTAATTCCG 57.881 37.037 0.00 0.00 0.00 4.30
254 255 9.968870 ACATCTATTTTCGAGACTAGTAATTCC 57.031 33.333 0.00 0.00 0.00 3.01
257 258 9.953697 GACACATCTATTTTCGAGACTAGTAAT 57.046 33.333 0.00 0.00 0.00 1.89
258 259 9.175312 AGACACATCTATTTTCGAGACTAGTAA 57.825 33.333 0.00 0.00 31.46 2.24
259 260 8.734218 AGACACATCTATTTTCGAGACTAGTA 57.266 34.615 0.00 0.00 31.46 1.82
260 261 7.633193 AGACACATCTATTTTCGAGACTAGT 57.367 36.000 0.00 0.00 31.46 2.57
263 264 9.141400 GTTTTAGACACATCTATTTTCGAGACT 57.859 33.333 0.00 0.00 37.28 3.24
264 265 9.141400 AGTTTTAGACACATCTATTTTCGAGAC 57.859 33.333 0.00 0.00 37.28 3.36
275 276 9.924650 AGACGTATTTTAGTTTTAGACACATCT 57.075 29.630 0.00 0.00 39.15 2.90
294 295 8.346300 CGCAGAAATGGATATATCTAGACGTAT 58.654 37.037 12.42 0.00 0.00 3.06
295 296 7.551617 TCGCAGAAATGGATATATCTAGACGTA 59.448 37.037 12.42 0.00 0.00 3.57
296 297 6.374613 TCGCAGAAATGGATATATCTAGACGT 59.625 38.462 12.42 0.00 0.00 4.34
297 298 6.689241 GTCGCAGAAATGGATATATCTAGACG 59.311 42.308 12.42 5.95 39.69 4.18
298 299 7.539436 TGTCGCAGAAATGGATATATCTAGAC 58.461 38.462 12.42 8.56 39.69 2.59
299 300 7.703058 TGTCGCAGAAATGGATATATCTAGA 57.297 36.000 12.42 0.00 39.69 2.43
300 301 8.031864 ACTTGTCGCAGAAATGGATATATCTAG 58.968 37.037 12.42 0.00 39.69 2.43
301 302 7.896811 ACTTGTCGCAGAAATGGATATATCTA 58.103 34.615 12.42 6.97 39.69 1.98
302 303 6.763355 ACTTGTCGCAGAAATGGATATATCT 58.237 36.000 12.42 0.00 39.69 1.98
303 304 8.534333 TTACTTGTCGCAGAAATGGATATATC 57.466 34.615 3.96 3.96 39.69 1.63
304 305 9.507329 AATTACTTGTCGCAGAAATGGATATAT 57.493 29.630 0.00 0.00 39.69 0.86
305 306 8.902540 AATTACTTGTCGCAGAAATGGATATA 57.097 30.769 0.00 0.00 39.69 0.86
306 307 7.041098 GGAATTACTTGTCGCAGAAATGGATAT 60.041 37.037 0.00 0.00 39.69 1.63
307 308 6.260050 GGAATTACTTGTCGCAGAAATGGATA 59.740 38.462 0.00 0.00 39.69 2.59
308 309 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
309 310 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
310 311 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
311 312 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
312 313 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
313 314 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
314 315 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
315 316 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
316 317 2.734606 TGTTCGGAATTACTTGTCGCAG 59.265 45.455 0.00 0.00 0.00 5.18
317 318 2.734606 CTGTTCGGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
318 319 2.991190 TCTGTTCGGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
319 320 3.612860 CCTCTGTTCGGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
320 321 3.933332 CCCTCTGTTCGGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
321 322 3.581332 TCCCTCTGTTCGGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
322 323 4.184629 CTCCCTCTGTTCGGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
323 324 3.838903 ACTCCCTCTGTTCGGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
324 325 3.442076 ACTCCCTCTGTTCGGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
325 326 3.889520 ACTCCCTCTGTTCGGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
326 327 4.607239 ACTACTCCCTCTGTTCGGAATTA 58.393 43.478 0.00 0.00 0.00 1.40
327 328 3.442076 ACTACTCCCTCTGTTCGGAATT 58.558 45.455 0.00 0.00 0.00 2.17
328 329 3.103080 ACTACTCCCTCTGTTCGGAAT 57.897 47.619 0.00 0.00 0.00 3.01
329 330 2.599408 ACTACTCCCTCTGTTCGGAA 57.401 50.000 0.00 0.00 0.00 4.30
330 331 2.599408 AACTACTCCCTCTGTTCGGA 57.401 50.000 0.00 0.00 0.00 4.55
331 332 2.561419 TGAAACTACTCCCTCTGTTCGG 59.439 50.000 0.00 0.00 0.00 4.30
332 333 3.936372 TGAAACTACTCCCTCTGTTCG 57.064 47.619 0.00 0.00 0.00 3.95
333 334 6.763610 CCAATATGAAACTACTCCCTCTGTTC 59.236 42.308 0.00 0.00 0.00 3.18
334 335 6.215636 ACCAATATGAAACTACTCCCTCTGTT 59.784 38.462 0.00 0.00 0.00 3.16
335 336 5.726793 ACCAATATGAAACTACTCCCTCTGT 59.273 40.000 0.00 0.00 0.00 3.41
336 337 6.240549 ACCAATATGAAACTACTCCCTCTG 57.759 41.667 0.00 0.00 0.00 3.35
337 338 8.432805 CAATACCAATATGAAACTACTCCCTCT 58.567 37.037 0.00 0.00 0.00 3.69
338 339 8.211629 ACAATACCAATATGAAACTACTCCCTC 58.788 37.037 0.00 0.00 0.00 4.30
339 340 8.102484 ACAATACCAATATGAAACTACTCCCT 57.898 34.615 0.00 0.00 0.00 4.20
340 341 9.490379 CTACAATACCAATATGAAACTACTCCC 57.510 37.037 0.00 0.00 0.00 4.30
394 400 4.494484 AGTCAAACTTTGCAACCTTTGAC 58.506 39.130 31.61 31.61 46.84 3.18
450 456 7.259088 ACATCACAAAATAGTACTCCCTCTT 57.741 36.000 0.00 0.00 0.00 2.85
573 817 4.178540 CGGCCGAAACTCATAGAAGTAAA 58.821 43.478 24.07 0.00 0.00 2.01
574 818 3.429822 CCGGCCGAAACTCATAGAAGTAA 60.430 47.826 30.73 0.00 0.00 2.24
575 819 2.100252 CCGGCCGAAACTCATAGAAGTA 59.900 50.000 30.73 0.00 0.00 2.24
576 820 1.134788 CCGGCCGAAACTCATAGAAGT 60.135 52.381 30.73 0.00 0.00 3.01
652 896 0.107703 TCGAACACCATGGAGGCATC 60.108 55.000 21.47 10.01 43.14 3.91
673 917 3.599343 TGAGTACAAAGCATGTAGGCAG 58.401 45.455 2.92 0.00 43.63 4.85
737 986 8.597662 ATCACTTTGTTTTCAATGGAGATTTG 57.402 30.769 0.00 0.00 39.70 2.32
776 1025 2.503331 TCGGCAGCAAAGATTTCAGAA 58.497 42.857 0.00 0.00 0.00 3.02
860 1147 2.920724 TGTCGGTCTTGGAACATTGA 57.079 45.000 0.00 0.00 39.30 2.57
863 1150 3.007940 TCAGATTGTCGGTCTTGGAACAT 59.992 43.478 0.00 0.00 39.30 2.71
951 1245 6.107343 GGTCAGGGAGAGTACTAAAATGTTC 58.893 44.000 0.00 0.00 0.00 3.18
953 1247 4.470304 GGGTCAGGGAGAGTACTAAAATGT 59.530 45.833 0.00 0.00 0.00 2.71
961 1255 0.335361 TGAGGGGTCAGGGAGAGTAC 59.665 60.000 0.00 0.00 0.00 2.73
1019 1314 1.175983 TTGTGTGGAAATGGCGGGAC 61.176 55.000 0.00 0.00 0.00 4.46
1045 1340 3.640231 GGAGATGATCGCAGCTGC 58.360 61.111 29.12 29.12 41.63 5.25
1085 1382 1.075050 AGGGAAGACTGACACTCCGTA 59.925 52.381 0.00 0.00 0.00 4.02
1086 1383 0.178958 AGGGAAGACTGACACTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
1087 1384 0.969894 AAGGGAAGACTGACACTCCG 59.030 55.000 0.00 0.00 0.00 4.63
1088 1385 1.276705 GGAAGGGAAGACTGACACTCC 59.723 57.143 0.00 0.00 0.00 3.85
1094 1395 1.434188 TTGCTGGAAGGGAAGACTGA 58.566 50.000 0.00 0.00 0.00 3.41
1214 1518 2.515757 TTGTCGCACTTGGCAGCA 60.516 55.556 0.00 0.00 45.17 4.41
1673 1986 7.750903 GCACTCAGTTGCTTTTTAGTATTTAGG 59.249 37.037 0.00 0.00 39.59 2.69
1674 1987 8.660968 GCACTCAGTTGCTTTTTAGTATTTAG 57.339 34.615 0.00 0.00 39.59 1.85
1688 2001 0.308993 GACAACCAGCACTCAGTTGC 59.691 55.000 9.08 0.00 43.68 4.17
1689 2002 1.331756 GTGACAACCAGCACTCAGTTG 59.668 52.381 8.02 8.02 45.02 3.16
1690 2003 1.668419 GTGACAACCAGCACTCAGTT 58.332 50.000 0.00 0.00 32.44 3.16
1691 2004 0.530650 CGTGACAACCAGCACTCAGT 60.531 55.000 0.00 0.00 32.98 3.41
1692 2005 0.530650 ACGTGACAACCAGCACTCAG 60.531 55.000 0.00 0.00 32.98 3.35
1693 2006 0.107897 AACGTGACAACCAGCACTCA 60.108 50.000 0.00 0.00 32.98 3.41
1694 2007 1.003866 GAAACGTGACAACCAGCACTC 60.004 52.381 0.00 0.00 32.98 3.51
1695 2008 1.014352 GAAACGTGACAACCAGCACT 58.986 50.000 0.00 0.00 32.98 4.40
1696 2009 0.730265 TGAAACGTGACAACCAGCAC 59.270 50.000 0.00 0.00 0.00 4.40
1697 2010 1.013596 CTGAAACGTGACAACCAGCA 58.986 50.000 0.00 0.00 0.00 4.41
1698 2011 0.317020 GCTGAAACGTGACAACCAGC 60.317 55.000 0.00 0.00 39.88 4.85
1699 2012 1.013596 TGCTGAAACGTGACAACCAG 58.986 50.000 0.00 0.00 0.00 4.00
1700 2013 0.730265 GTGCTGAAACGTGACAACCA 59.270 50.000 0.00 0.00 0.00 3.67
1701 2014 1.003866 GAGTGCTGAAACGTGACAACC 60.004 52.381 0.00 0.00 0.00 3.77
1702 2015 1.663643 TGAGTGCTGAAACGTGACAAC 59.336 47.619 0.00 0.00 0.00 3.32
1703 2016 1.663643 GTGAGTGCTGAAACGTGACAA 59.336 47.619 0.00 0.00 0.00 3.18
1704 2017 1.286501 GTGAGTGCTGAAACGTGACA 58.713 50.000 0.00 0.00 0.00 3.58
1705 2018 0.582005 GGTGAGTGCTGAAACGTGAC 59.418 55.000 0.00 0.00 0.00 3.67
1706 2019 0.464036 AGGTGAGTGCTGAAACGTGA 59.536 50.000 0.00 0.00 0.00 4.35
1707 2020 1.299541 AAGGTGAGTGCTGAAACGTG 58.700 50.000 0.00 0.00 0.00 4.49
1708 2021 2.038387 AAAGGTGAGTGCTGAAACGT 57.962 45.000 0.00 0.00 0.00 3.99
1709 2022 3.607078 GCTAAAAGGTGAGTGCTGAAACG 60.607 47.826 0.00 0.00 0.00 3.60
1710 2023 3.315191 TGCTAAAAGGTGAGTGCTGAAAC 59.685 43.478 0.00 0.00 0.00 2.78
1711 2024 3.315191 GTGCTAAAAGGTGAGTGCTGAAA 59.685 43.478 0.00 0.00 0.00 2.69
1712 2025 2.878406 GTGCTAAAAGGTGAGTGCTGAA 59.122 45.455 0.00 0.00 0.00 3.02
1713 2026 2.494059 GTGCTAAAAGGTGAGTGCTGA 58.506 47.619 0.00 0.00 0.00 4.26
1714 2027 1.537202 GGTGCTAAAAGGTGAGTGCTG 59.463 52.381 0.00 0.00 0.00 4.41
1715 2028 1.878102 CGGTGCTAAAAGGTGAGTGCT 60.878 52.381 0.00 0.00 0.00 4.40
1716 2029 0.517316 CGGTGCTAAAAGGTGAGTGC 59.483 55.000 0.00 0.00 0.00 4.40
1717 2030 1.798813 GACGGTGCTAAAAGGTGAGTG 59.201 52.381 0.00 0.00 0.00 3.51
1718 2031 1.270678 GGACGGTGCTAAAAGGTGAGT 60.271 52.381 0.00 0.00 0.00 3.41
1719 2032 1.439679 GGACGGTGCTAAAAGGTGAG 58.560 55.000 0.00 0.00 0.00 3.51
1720 2033 0.320073 CGGACGGTGCTAAAAGGTGA 60.320 55.000 0.00 0.00 0.00 4.02
1721 2034 0.320073 TCGGACGGTGCTAAAAGGTG 60.320 55.000 0.00 0.00 0.00 4.00
1722 2035 0.611714 ATCGGACGGTGCTAAAAGGT 59.388 50.000 0.00 0.00 0.00 3.50
1723 2036 1.287425 GATCGGACGGTGCTAAAAGG 58.713 55.000 0.00 0.00 0.00 3.11
1724 2037 0.921347 CGATCGGACGGTGCTAAAAG 59.079 55.000 7.38 0.00 0.00 2.27
1725 2038 0.458889 CCGATCGGACGGTGCTAAAA 60.459 55.000 30.62 0.00 46.70 1.52
1726 2039 1.140161 CCGATCGGACGGTGCTAAA 59.860 57.895 30.62 0.00 46.70 1.85
1727 2040 2.802792 CCGATCGGACGGTGCTAA 59.197 61.111 30.62 0.00 46.70 3.09
1744 2057 2.694829 ATACCTGGGTTCGATCGCGC 62.695 60.000 11.09 6.54 37.46 6.86
1745 2058 0.249322 AATACCTGGGTTCGATCGCG 60.249 55.000 11.09 0.00 39.35 5.87
1746 2059 1.499049 GAATACCTGGGTTCGATCGC 58.501 55.000 11.09 3.72 0.00 4.58
1747 2060 1.687123 AGGAATACCTGGGTTCGATCG 59.313 52.381 9.36 9.36 45.92 3.69
1758 2071 4.687593 ATCGTCCCGACCAGGAATACCT 62.688 54.545 0.00 0.00 42.75 3.08
1759 2072 1.039233 TCGTCCCGACCAGGAATACC 61.039 60.000 0.00 0.00 45.00 2.73
1760 2073 1.000496 GATCGTCCCGACCAGGAATAC 60.000 57.143 0.00 0.00 45.00 1.89
1761 2074 1.325355 GATCGTCCCGACCAGGAATA 58.675 55.000 0.00 0.00 45.00 1.75
1762 2075 1.735376 CGATCGTCCCGACCAGGAAT 61.735 60.000 7.03 0.00 45.00 3.01
1763 2076 2.412323 CGATCGTCCCGACCAGGAA 61.412 63.158 7.03 0.00 45.00 3.36
1764 2077 2.827190 CGATCGTCCCGACCAGGA 60.827 66.667 7.03 0.00 45.00 3.86
1765 2078 3.900892 CCGATCGTCCCGACCAGG 61.901 72.222 15.09 0.00 39.18 4.45
1766 2079 2.609183 GAACCGATCGTCCCGACCAG 62.609 65.000 15.09 0.00 39.18 4.00
1767 2080 2.677524 AACCGATCGTCCCGACCA 60.678 61.111 15.09 0.00 39.18 4.02
1768 2081 2.103736 GAACCGATCGTCCCGACC 59.896 66.667 15.09 0.00 39.18 4.79
1769 2082 2.277756 CGAACCGATCGTCCCGAC 60.278 66.667 15.09 0.00 46.52 4.79
1777 2090 2.794028 GGGGGAGGACGAACCGATC 61.794 68.421 0.00 0.00 44.74 3.69
1778 2091 2.762875 GGGGGAGGACGAACCGAT 60.763 66.667 0.00 0.00 44.74 4.18
1792 2105 1.520787 GAATACGTGTCAGCGGGGG 60.521 63.158 0.00 0.00 35.98 5.40
1793 2106 1.082117 GTGAATACGTGTCAGCGGGG 61.082 60.000 0.00 0.00 35.98 5.73
1794 2107 1.082117 GGTGAATACGTGTCAGCGGG 61.082 60.000 14.80 0.00 34.16 6.13
1795 2108 0.108804 AGGTGAATACGTGTCAGCGG 60.109 55.000 20.59 0.00 45.87 5.52
1796 2109 0.992072 CAGGTGAATACGTGTCAGCG 59.008 55.000 20.59 14.51 45.87 5.18
1797 2110 1.067142 TCCAGGTGAATACGTGTCAGC 60.067 52.381 19.72 19.72 42.52 4.26
1798 2111 2.417379 CCTCCAGGTGAATACGTGTCAG 60.417 54.545 0.00 0.00 40.22 3.51
1799 2112 1.548719 CCTCCAGGTGAATACGTGTCA 59.451 52.381 0.00 0.00 40.22 3.58
1800 2113 1.739371 GCCTCCAGGTGAATACGTGTC 60.739 57.143 0.00 0.00 40.22 3.67
1801 2114 0.249398 GCCTCCAGGTGAATACGTGT 59.751 55.000 0.00 0.00 40.22 4.49
1802 2115 0.462047 GGCCTCCAGGTGAATACGTG 60.462 60.000 0.00 0.00 41.21 4.49
1803 2116 1.623542 GGGCCTCCAGGTGAATACGT 61.624 60.000 0.84 0.00 37.57 3.57
1804 2117 1.146263 GGGCCTCCAGGTGAATACG 59.854 63.158 0.84 0.00 37.57 3.06
1805 2118 0.107165 GTGGGCCTCCAGGTGAATAC 60.107 60.000 4.53 0.00 45.05 1.89
1806 2119 1.279025 GGTGGGCCTCCAGGTGAATA 61.279 60.000 19.59 0.00 45.05 1.75
1807 2120 2.616458 GGTGGGCCTCCAGGTGAAT 61.616 63.158 19.59 0.00 45.05 2.57
1808 2121 3.256960 GGTGGGCCTCCAGGTGAA 61.257 66.667 19.59 0.00 45.05 3.18
1809 2122 4.590553 TGGTGGGCCTCCAGGTGA 62.591 66.667 23.02 0.00 45.05 4.02
1810 2123 4.351054 GTGGTGGGCCTCCAGGTG 62.351 72.222 26.95 0.00 45.05 4.00
1811 2124 3.188355 TAGTGGTGGGCCTCCAGGT 62.188 63.158 26.95 18.96 45.05 4.00
1812 2125 2.285368 TAGTGGTGGGCCTCCAGG 60.285 66.667 26.95 0.00 45.05 4.45
1813 2126 2.670148 GGTAGTGGTGGGCCTCCAG 61.670 68.421 26.95 0.00 45.05 3.86
1814 2127 2.609610 GGTAGTGGTGGGCCTCCA 60.610 66.667 23.02 23.02 41.58 3.86
1815 2128 3.408853 GGGTAGTGGTGGGCCTCC 61.409 72.222 17.79 17.79 35.27 4.30
1816 2129 2.609610 TGGGTAGTGGTGGGCCTC 60.610 66.667 4.53 0.00 35.27 4.70
1817 2130 2.933834 GTGGGTAGTGGTGGGCCT 60.934 66.667 4.53 0.00 35.27 5.19
1818 2131 4.404098 CGTGGGTAGTGGTGGGCC 62.404 72.222 0.00 0.00 0.00 5.80
1820 2133 4.752879 CGCGTGGGTAGTGGTGGG 62.753 72.222 0.00 0.00 0.00 4.61
1839 2152 4.003788 AGTGAGGCAACGGACGGG 62.004 66.667 0.00 0.00 46.39 5.28
1840 2153 2.738521 CAGTGAGGCAACGGACGG 60.739 66.667 0.00 0.00 46.39 4.79
1841 2154 1.157870 AAACAGTGAGGCAACGGACG 61.158 55.000 0.00 0.00 46.39 4.79
1842 2155 0.586802 GAAACAGTGAGGCAACGGAC 59.413 55.000 0.00 0.00 46.39 4.79
1843 2156 0.878523 CGAAACAGTGAGGCAACGGA 60.879 55.000 0.00 0.00 46.39 4.69
1844 2157 0.878523 TCGAAACAGTGAGGCAACGG 60.879 55.000 0.00 0.00 46.39 4.44
1845 2158 0.934496 TTCGAAACAGTGAGGCAACG 59.066 50.000 0.00 0.00 46.39 4.10
1846 2159 2.854805 GCTTTCGAAACAGTGAGGCAAC 60.855 50.000 6.47 0.00 0.00 4.17
1847 2160 1.333619 GCTTTCGAAACAGTGAGGCAA 59.666 47.619 6.47 0.00 0.00 4.52
1848 2161 0.944386 GCTTTCGAAACAGTGAGGCA 59.056 50.000 6.47 0.00 0.00 4.75
1849 2162 1.195674 GAGCTTTCGAAACAGTGAGGC 59.804 52.381 6.47 7.20 0.00 4.70
1850 2163 2.760374 AGAGCTTTCGAAACAGTGAGG 58.240 47.619 6.47 0.00 0.00 3.86
1851 2164 4.384247 CACTAGAGCTTTCGAAACAGTGAG 59.616 45.833 6.47 4.84 35.32 3.51
1852 2165 4.299155 CACTAGAGCTTTCGAAACAGTGA 58.701 43.478 6.47 0.00 35.32 3.41
1853 2166 3.430218 CCACTAGAGCTTTCGAAACAGTG 59.570 47.826 6.47 13.61 33.58 3.66
1854 2167 3.069729 ACCACTAGAGCTTTCGAAACAGT 59.930 43.478 6.47 2.93 0.00 3.55
1855 2168 3.654414 ACCACTAGAGCTTTCGAAACAG 58.346 45.455 6.47 0.00 0.00 3.16
1856 2169 3.746045 ACCACTAGAGCTTTCGAAACA 57.254 42.857 6.47 0.00 0.00 2.83
1857 2170 4.621886 CACTACCACTAGAGCTTTCGAAAC 59.378 45.833 6.47 4.52 0.00 2.78
1858 2171 4.806330 CACTACCACTAGAGCTTTCGAAA 58.194 43.478 10.71 10.71 0.00 3.46
1859 2172 3.367087 GCACTACCACTAGAGCTTTCGAA 60.367 47.826 0.00 0.00 34.63 3.71
1860 2173 2.163815 GCACTACCACTAGAGCTTTCGA 59.836 50.000 0.00 0.00 34.63 3.71
1861 2174 2.164624 AGCACTACCACTAGAGCTTTCG 59.835 50.000 0.00 0.00 42.40 3.46
1862 2175 3.516615 CAGCACTACCACTAGAGCTTTC 58.483 50.000 0.00 0.00 42.40 2.62
1863 2176 2.234908 CCAGCACTACCACTAGAGCTTT 59.765 50.000 0.00 0.00 42.40 3.51
1864 2177 1.827969 CCAGCACTACCACTAGAGCTT 59.172 52.381 0.00 0.00 42.40 3.74
1865 2178 1.006043 TCCAGCACTACCACTAGAGCT 59.994 52.381 0.00 0.00 44.95 4.09
1866 2179 1.407258 CTCCAGCACTACCACTAGAGC 59.593 57.143 0.00 0.00 36.97 4.09
1867 2180 2.028130 CCTCCAGCACTACCACTAGAG 58.972 57.143 0.00 0.00 0.00 2.43
1868 2181 1.960471 GCCTCCAGCACTACCACTAGA 60.960 57.143 0.00 0.00 42.97 2.43
1869 2182 0.461961 GCCTCCAGCACTACCACTAG 59.538 60.000 0.00 0.00 42.97 2.57
1870 2183 0.976073 GGCCTCCAGCACTACCACTA 60.976 60.000 0.00 0.00 46.50 2.74
1871 2184 2.294078 GGCCTCCAGCACTACCACT 61.294 63.158 0.00 0.00 46.50 4.00
1872 2185 2.269241 GGCCTCCAGCACTACCAC 59.731 66.667 0.00 0.00 46.50 4.16
1873 2186 3.009115 GGGCCTCCAGCACTACCA 61.009 66.667 0.84 0.00 43.83 3.25
1881 2194 2.670148 GGTAGTGGTGGGCCTCCAG 61.670 68.421 26.95 0.00 45.05 3.86
1882 2195 2.609610 GGTAGTGGTGGGCCTCCA 60.610 66.667 23.02 23.02 41.58 3.86
1883 2196 3.408853 GGGTAGTGGTGGGCCTCC 61.409 72.222 17.79 17.79 35.27 4.30
1884 2197 2.609610 TGGGTAGTGGTGGGCCTC 60.610 66.667 4.53 0.00 35.27 4.70
1885 2198 2.933834 GTGGGTAGTGGTGGGCCT 60.934 66.667 4.53 0.00 35.27 5.19
1886 2199 4.404098 CGTGGGTAGTGGTGGGCC 62.404 72.222 0.00 0.00 0.00 5.80
1888 2201 4.752879 CGCGTGGGTAGTGGTGGG 62.753 72.222 0.00 0.00 0.00 4.61
1907 2220 4.003788 AGTGAGGCAACGGACGGG 62.004 66.667 0.00 0.00 46.39 5.28
1908 2221 2.738521 CAGTGAGGCAACGGACGG 60.739 66.667 0.00 0.00 46.39 4.79
1909 2222 1.157870 AAACAGTGAGGCAACGGACG 61.158 55.000 0.00 0.00 46.39 4.79
1910 2223 1.021968 AAAACAGTGAGGCAACGGAC 58.978 50.000 0.00 0.00 46.39 4.79
1911 2224 1.673920 GAAAAACAGTGAGGCAACGGA 59.326 47.619 0.00 0.00 46.39 4.69
1912 2225 1.403679 TGAAAAACAGTGAGGCAACGG 59.596 47.619 0.00 0.00 46.39 4.44
1913 2226 2.719798 CTGAAAAACAGTGAGGCAACG 58.280 47.619 0.00 0.00 41.18 4.10
1924 2237 8.442384 GCTTTGAAAAAGATCAACTGAAAAACA 58.558 29.630 3.95 0.00 38.95 2.83
1925 2238 8.659491 AGCTTTGAAAAAGATCAACTGAAAAAC 58.341 29.630 3.95 0.00 38.95 2.43
1926 2239 8.776376 AGCTTTGAAAAAGATCAACTGAAAAA 57.224 26.923 3.95 0.00 38.95 1.94
1927 2240 8.253113 AGAGCTTTGAAAAAGATCAACTGAAAA 58.747 29.630 17.39 0.00 38.95 2.29
1928 2241 7.775120 AGAGCTTTGAAAAAGATCAACTGAAA 58.225 30.769 17.39 0.00 38.95 2.69
1929 2242 7.338800 AGAGCTTTGAAAAAGATCAACTGAA 57.661 32.000 17.39 0.00 38.95 3.02
1930 2243 6.949352 AGAGCTTTGAAAAAGATCAACTGA 57.051 33.333 17.39 0.00 38.95 3.41
1931 2244 7.802251 CACTAGAGCTTTGAAAAAGATCAACTG 59.198 37.037 17.39 7.30 38.95 3.16
1932 2245 7.500559 ACACTAGAGCTTTGAAAAAGATCAACT 59.499 33.333 17.39 3.07 38.95 3.16
1933 2246 7.643579 ACACTAGAGCTTTGAAAAAGATCAAC 58.356 34.615 17.39 0.00 38.95 3.18
1934 2247 7.807977 ACACTAGAGCTTTGAAAAAGATCAA 57.192 32.000 17.39 0.00 35.30 2.57
1935 2248 7.807977 AACACTAGAGCTTTGAAAAAGATCA 57.192 32.000 17.39 5.70 35.30 2.92
1936 2249 8.345565 TGAAACACTAGAGCTTTGAAAAAGATC 58.654 33.333 9.40 9.40 33.20 2.75
1937 2250 8.225603 TGAAACACTAGAGCTTTGAAAAAGAT 57.774 30.769 0.00 0.00 0.00 2.40
1938 2251 7.552687 TCTGAAACACTAGAGCTTTGAAAAAGA 59.447 33.333 0.00 0.00 0.00 2.52
1939 2252 7.697691 TCTGAAACACTAGAGCTTTGAAAAAG 58.302 34.615 0.00 0.00 0.00 2.27
1940 2253 7.624360 TCTGAAACACTAGAGCTTTGAAAAA 57.376 32.000 0.00 0.00 0.00 1.94
1941 2254 7.041098 GGATCTGAAACACTAGAGCTTTGAAAA 60.041 37.037 0.00 0.00 30.49 2.29
1942 2255 6.428159 GGATCTGAAACACTAGAGCTTTGAAA 59.572 38.462 0.00 0.00 30.49 2.69
1943 2256 5.934625 GGATCTGAAACACTAGAGCTTTGAA 59.065 40.000 0.00 0.00 30.49 2.69
1944 2257 5.012046 TGGATCTGAAACACTAGAGCTTTGA 59.988 40.000 0.00 0.00 30.49 2.69
1945 2258 5.240891 TGGATCTGAAACACTAGAGCTTTG 58.759 41.667 0.00 0.00 30.49 2.77
1946 2259 5.489792 TGGATCTGAAACACTAGAGCTTT 57.510 39.130 0.00 0.00 30.49 3.51
1947 2260 5.426504 CATGGATCTGAAACACTAGAGCTT 58.573 41.667 0.00 0.00 30.49 3.74
1948 2261 4.141756 CCATGGATCTGAAACACTAGAGCT 60.142 45.833 5.56 0.00 30.49 4.09
1949 2262 4.125703 CCATGGATCTGAAACACTAGAGC 58.874 47.826 5.56 0.00 0.00 4.09
1950 2263 4.125703 GCCATGGATCTGAAACACTAGAG 58.874 47.826 18.40 0.00 0.00 2.43
1951 2264 3.430790 CGCCATGGATCTGAAACACTAGA 60.431 47.826 18.40 0.00 0.00 2.43
1952 2265 2.868583 CGCCATGGATCTGAAACACTAG 59.131 50.000 18.40 0.00 0.00 2.57
1953 2266 2.499693 TCGCCATGGATCTGAAACACTA 59.500 45.455 18.40 0.00 0.00 2.74
1954 2267 1.278985 TCGCCATGGATCTGAAACACT 59.721 47.619 18.40 0.00 0.00 3.55
1955 2268 1.737838 TCGCCATGGATCTGAAACAC 58.262 50.000 18.40 0.00 0.00 3.32
1956 2269 2.291365 CATCGCCATGGATCTGAAACA 58.709 47.619 18.40 0.00 0.00 2.83
1957 2270 2.032550 CACATCGCCATGGATCTGAAAC 59.967 50.000 18.40 0.00 33.82 2.78
1958 2271 2.291365 CACATCGCCATGGATCTGAAA 58.709 47.619 18.40 0.00 33.82 2.69
1959 2272 1.210234 ACACATCGCCATGGATCTGAA 59.790 47.619 18.40 0.00 33.82 3.02
1960 2273 0.832626 ACACATCGCCATGGATCTGA 59.167 50.000 18.40 7.43 33.82 3.27
1961 2274 2.410939 CTACACATCGCCATGGATCTG 58.589 52.381 18.40 11.02 33.82 2.90
1962 2275 1.345741 CCTACACATCGCCATGGATCT 59.654 52.381 18.40 0.00 33.82 2.75
1963 2276 1.800805 CCTACACATCGCCATGGATC 58.199 55.000 18.40 0.00 33.82 3.36
1964 2277 0.250467 GCCTACACATCGCCATGGAT 60.250 55.000 18.40 0.00 33.82 3.41
1965 2278 1.146041 GCCTACACATCGCCATGGA 59.854 57.895 18.40 0.00 33.82 3.41
1966 2279 1.153188 TGCCTACACATCGCCATGG 60.153 57.895 7.63 7.63 33.82 3.66
1967 2280 1.162181 CCTGCCTACACATCGCCATG 61.162 60.000 0.00 0.00 35.92 3.66
1968 2281 1.146930 CCTGCCTACACATCGCCAT 59.853 57.895 0.00 0.00 0.00 4.40
1969 2282 1.960040 CTCCTGCCTACACATCGCCA 61.960 60.000 0.00 0.00 0.00 5.69
1970 2283 1.227380 CTCCTGCCTACACATCGCC 60.227 63.158 0.00 0.00 0.00 5.54
1971 2284 1.227380 CCTCCTGCCTACACATCGC 60.227 63.158 0.00 0.00 0.00 4.58
1972 2285 0.537188 AACCTCCTGCCTACACATCG 59.463 55.000 0.00 0.00 0.00 3.84
1973 2286 2.633488 GAAACCTCCTGCCTACACATC 58.367 52.381 0.00 0.00 0.00 3.06
1974 2287 1.282157 GGAAACCTCCTGCCTACACAT 59.718 52.381 0.00 0.00 38.88 3.21
1975 2288 0.690762 GGAAACCTCCTGCCTACACA 59.309 55.000 0.00 0.00 38.88 3.72
1976 2289 3.553109 GGAAACCTCCTGCCTACAC 57.447 57.895 0.00 0.00 38.88 2.90
1985 2298 1.665137 TCTACCCCAAGGAAACCTCC 58.335 55.000 0.00 0.00 42.81 4.30
1986 2299 2.910977 TCTTCTACCCCAAGGAAACCTC 59.089 50.000 0.00 0.00 36.73 3.85
1987 2300 2.999928 TCTTCTACCCCAAGGAAACCT 58.000 47.619 0.00 0.00 36.73 3.50
1988 2301 3.561528 CCTTCTTCTACCCCAAGGAAACC 60.562 52.174 0.00 0.00 38.15 3.27
1989 2302 3.561528 CCCTTCTTCTACCCCAAGGAAAC 60.562 52.174 0.00 0.00 38.15 2.78
1990 2303 2.647802 CCCTTCTTCTACCCCAAGGAAA 59.352 50.000 0.00 0.00 38.15 3.13
1991 2304 2.275466 CCCTTCTTCTACCCCAAGGAA 58.725 52.381 0.00 0.00 38.15 3.36
1992 2305 1.557188 CCCCTTCTTCTACCCCAAGGA 60.557 57.143 0.00 0.00 38.15 3.36
1993 2306 0.919710 CCCCTTCTTCTACCCCAAGG 59.080 60.000 0.00 0.00 35.99 3.61
1994 2307 1.840635 CTCCCCTTCTTCTACCCCAAG 59.159 57.143 0.00 0.00 0.00 3.61
1995 2308 1.439543 TCTCCCCTTCTTCTACCCCAA 59.560 52.381 0.00 0.00 0.00 4.12
1996 2309 1.098589 TCTCCCCTTCTTCTACCCCA 58.901 55.000 0.00 0.00 0.00 4.96
1997 2310 2.498473 ATCTCCCCTTCTTCTACCCC 57.502 55.000 0.00 0.00 0.00 4.95
1998 2311 3.117851 CCAAATCTCCCCTTCTTCTACCC 60.118 52.174 0.00 0.00 0.00 3.69
1999 2312 3.117851 CCCAAATCTCCCCTTCTTCTACC 60.118 52.174 0.00 0.00 0.00 3.18
2000 2313 3.117851 CCCCAAATCTCCCCTTCTTCTAC 60.118 52.174 0.00 0.00 0.00 2.59
2001 2314 3.123273 CCCCAAATCTCCCCTTCTTCTA 58.877 50.000 0.00 0.00 0.00 2.10
2002 2315 1.925959 CCCCAAATCTCCCCTTCTTCT 59.074 52.381 0.00 0.00 0.00 2.85
2003 2316 1.063642 CCCCCAAATCTCCCCTTCTTC 60.064 57.143 0.00 0.00 0.00 2.87
2004 2317 1.010795 CCCCCAAATCTCCCCTTCTT 58.989 55.000 0.00 0.00 0.00 2.52
2005 2318 0.123266 TCCCCCAAATCTCCCCTTCT 59.877 55.000 0.00 0.00 0.00 2.85
2006 2319 0.553333 CTCCCCCAAATCTCCCCTTC 59.447 60.000 0.00 0.00 0.00 3.46
2007 2320 0.123266 TCTCCCCCAAATCTCCCCTT 59.877 55.000 0.00 0.00 0.00 3.95
2008 2321 0.123266 TTCTCCCCCAAATCTCCCCT 59.877 55.000 0.00 0.00 0.00 4.79
2009 2322 0.553333 CTTCTCCCCCAAATCTCCCC 59.447 60.000 0.00 0.00 0.00 4.81
2010 2323 0.553333 CCTTCTCCCCCAAATCTCCC 59.447 60.000 0.00 0.00 0.00 4.30
2011 2324 1.064389 CACCTTCTCCCCCAAATCTCC 60.064 57.143 0.00 0.00 0.00 3.71
2012 2325 1.064389 CCACCTTCTCCCCCAAATCTC 60.064 57.143 0.00 0.00 0.00 2.75
2013 2326 1.002857 CCACCTTCTCCCCCAAATCT 58.997 55.000 0.00 0.00 0.00 2.40
2014 2327 0.999712 TCCACCTTCTCCCCCAAATC 59.000 55.000 0.00 0.00 0.00 2.17
2015 2328 1.002857 CTCCACCTTCTCCCCCAAAT 58.997 55.000 0.00 0.00 0.00 2.32
2016 2329 0.104144 TCTCCACCTTCTCCCCCAAA 60.104 55.000 0.00 0.00 0.00 3.28
2017 2330 0.547712 CTCTCCACCTTCTCCCCCAA 60.548 60.000 0.00 0.00 0.00 4.12
2018 2331 1.081092 CTCTCCACCTTCTCCCCCA 59.919 63.158 0.00 0.00 0.00 4.96
2019 2332 0.252742 TTCTCTCCACCTTCTCCCCC 60.253 60.000 0.00 0.00 0.00 5.40
2020 2333 1.488393 CATTCTCTCCACCTTCTCCCC 59.512 57.143 0.00 0.00 0.00 4.81
2021 2334 1.488393 CCATTCTCTCCACCTTCTCCC 59.512 57.143 0.00 0.00 0.00 4.30
2022 2335 2.192263 ACCATTCTCTCCACCTTCTCC 58.808 52.381 0.00 0.00 0.00 3.71
2023 2336 3.369997 GGAACCATTCTCTCCACCTTCTC 60.370 52.174 0.00 0.00 0.00 2.87
2024 2337 2.573915 GGAACCATTCTCTCCACCTTCT 59.426 50.000 0.00 0.00 0.00 2.85
2025 2338 2.573915 AGGAACCATTCTCTCCACCTTC 59.426 50.000 0.00 0.00 0.00 3.46
2026 2339 2.637165 AGGAACCATTCTCTCCACCTT 58.363 47.619 0.00 0.00 0.00 3.50
2027 2340 2.307098 CAAGGAACCATTCTCTCCACCT 59.693 50.000 0.00 0.00 0.00 4.00
2028 2341 2.619074 CCAAGGAACCATTCTCTCCACC 60.619 54.545 0.00 0.00 0.00 4.61
2029 2342 2.619074 CCCAAGGAACCATTCTCTCCAC 60.619 54.545 0.00 0.00 0.00 4.02
2030 2343 1.635487 CCCAAGGAACCATTCTCTCCA 59.365 52.381 0.00 0.00 0.00 3.86
2031 2344 1.064389 CCCCAAGGAACCATTCTCTCC 60.064 57.143 0.00 0.00 33.47 3.71
2032 2345 1.064389 CCCCCAAGGAACCATTCTCTC 60.064 57.143 0.00 0.00 38.24 3.20
2033 2346 1.002857 CCCCCAAGGAACCATTCTCT 58.997 55.000 0.00 0.00 38.24 3.10
2034 2347 0.999712 TCCCCCAAGGAACCATTCTC 59.000 55.000 0.00 0.00 43.78 2.87
2035 2348 1.002857 CTCCCCCAAGGAACCATTCT 58.997 55.000 0.00 0.00 46.94 2.40
2036 2349 0.999712 TCTCCCCCAAGGAACCATTC 59.000 55.000 0.00 0.00 46.94 2.67
2037 2350 1.359130 CTTCTCCCCCAAGGAACCATT 59.641 52.381 0.00 0.00 46.94 3.16
2038 2351 1.002857 CTTCTCCCCCAAGGAACCAT 58.997 55.000 0.00 0.00 46.94 3.55
2039 2352 1.140134 CCTTCTCCCCCAAGGAACCA 61.140 60.000 0.00 0.00 46.94 3.67
2040 2353 0.845102 TCCTTCTCCCCCAAGGAACC 60.845 60.000 0.00 0.00 46.94 3.62
2041 2354 2.787118 TCCTTCTCCCCCAAGGAAC 58.213 57.895 0.00 0.00 46.94 3.62
2044 2357 1.649271 CCCATCCTTCTCCCCCAAGG 61.649 65.000 0.00 0.00 41.81 3.61
2045 2358 1.649271 CCCCATCCTTCTCCCCCAAG 61.649 65.000 0.00 0.00 0.00 3.61
2046 2359 1.622442 CCCCATCCTTCTCCCCCAA 60.622 63.158 0.00 0.00 0.00 4.12
2047 2360 2.044450 CCCCATCCTTCTCCCCCA 59.956 66.667 0.00 0.00 0.00 4.96
2048 2361 3.502875 GCCCCATCCTTCTCCCCC 61.503 72.222 0.00 0.00 0.00 5.40
2049 2362 2.696125 TGCCCCATCCTTCTCCCC 60.696 66.667 0.00 0.00 0.00 4.81
2050 2363 1.694169 TCTGCCCCATCCTTCTCCC 60.694 63.158 0.00 0.00 0.00 4.30
2051 2364 0.692419 TCTCTGCCCCATCCTTCTCC 60.692 60.000 0.00 0.00 0.00 3.71
2052 2365 0.758123 CTCTCTGCCCCATCCTTCTC 59.242 60.000 0.00 0.00 0.00 2.87
2053 2366 0.693767 CCTCTCTGCCCCATCCTTCT 60.694 60.000 0.00 0.00 0.00 2.85
2054 2367 1.704007 CCCTCTCTGCCCCATCCTTC 61.704 65.000 0.00 0.00 0.00 3.46
2055 2368 1.695597 CCCTCTCTGCCCCATCCTT 60.696 63.158 0.00 0.00 0.00 3.36
2056 2369 2.040043 CCCTCTCTGCCCCATCCT 60.040 66.667 0.00 0.00 0.00 3.24
2057 2370 2.040464 TCCCTCTCTGCCCCATCC 60.040 66.667 0.00 0.00 0.00 3.51
2058 2371 2.146061 CCTCCCTCTCTGCCCCATC 61.146 68.421 0.00 0.00 0.00 3.51
2059 2372 2.040043 CCTCCCTCTCTGCCCCAT 60.040 66.667 0.00 0.00 0.00 4.00
2060 2373 4.421554 CCCTCCCTCTCTGCCCCA 62.422 72.222 0.00 0.00 0.00 4.96
2062 2375 3.642741 TTCCCCTCCCTCTCTGCCC 62.643 68.421 0.00 0.00 0.00 5.36
2063 2376 2.041265 TTCCCCTCCCTCTCTGCC 59.959 66.667 0.00 0.00 0.00 4.85
2064 2377 2.371259 GGTTCCCCTCCCTCTCTGC 61.371 68.421 0.00 0.00 0.00 4.26
2065 2378 1.081092 TGGTTCCCCTCCCTCTCTG 59.919 63.158 0.00 0.00 0.00 3.35
2066 2379 1.081277 GTGGTTCCCCTCCCTCTCT 59.919 63.158 0.00 0.00 0.00 3.10
2067 2380 2.359967 CGTGGTTCCCCTCCCTCTC 61.360 68.421 0.00 0.00 0.00 3.20
2068 2381 2.284699 CGTGGTTCCCCTCCCTCT 60.285 66.667 0.00 0.00 0.00 3.69
2069 2382 2.606826 ACGTGGTTCCCCTCCCTC 60.607 66.667 0.00 0.00 0.00 4.30
2070 2383 2.765705 ATCACGTGGTTCCCCTCCCT 62.766 60.000 17.00 0.00 0.00 4.20
2071 2384 1.848886 AATCACGTGGTTCCCCTCCC 61.849 60.000 17.00 0.00 0.00 4.30
2072 2385 0.676782 CAATCACGTGGTTCCCCTCC 60.677 60.000 12.04 0.00 0.00 4.30
2073 2386 1.305930 GCAATCACGTGGTTCCCCTC 61.306 60.000 12.04 0.00 0.00 4.30
2074 2387 1.303317 GCAATCACGTGGTTCCCCT 60.303 57.895 12.04 0.00 0.00 4.79
2075 2388 2.686816 CGCAATCACGTGGTTCCCC 61.687 63.158 12.04 2.23 0.00 4.81
2076 2389 1.024579 ATCGCAATCACGTGGTTCCC 61.025 55.000 12.04 4.87 0.00 3.97
2077 2390 0.096976 CATCGCAATCACGTGGTTCC 59.903 55.000 12.04 0.47 0.00 3.62
2078 2391 0.096976 CCATCGCAATCACGTGGTTC 59.903 55.000 12.04 6.03 32.87 3.62
2079 2392 1.305219 CCCATCGCAATCACGTGGTT 61.305 55.000 17.00 12.96 34.50 3.67
2080 2393 1.745115 CCCATCGCAATCACGTGGT 60.745 57.895 17.00 5.26 34.50 4.16
2081 2394 1.431488 CTCCCATCGCAATCACGTGG 61.431 60.000 17.00 0.08 35.42 4.94
2082 2395 1.431488 CCTCCCATCGCAATCACGTG 61.431 60.000 9.94 9.94 0.00 4.49
2083 2396 1.153369 CCTCCCATCGCAATCACGT 60.153 57.895 0.00 0.00 0.00 4.49
2084 2397 1.889105 CCCTCCCATCGCAATCACG 60.889 63.158 0.00 0.00 0.00 4.35
2085 2398 1.526917 CCCCTCCCATCGCAATCAC 60.527 63.158 0.00 0.00 0.00 3.06
2086 2399 2.918248 CCCCTCCCATCGCAATCA 59.082 61.111 0.00 0.00 0.00 2.57
2087 2400 2.595754 GCCCCTCCCATCGCAATC 60.596 66.667 0.00 0.00 0.00 2.67
2088 2401 4.569180 CGCCCCTCCCATCGCAAT 62.569 66.667 0.00 0.00 0.00 3.56
2093 2406 4.506255 CAACCCGCCCCTCCCATC 62.506 72.222 0.00 0.00 0.00 3.51
2101 2414 3.787001 CTCTCCTCCAACCCGCCC 61.787 72.222 0.00 0.00 0.00 6.13
2102 2415 2.066999 ATCTCTCCTCCAACCCGCC 61.067 63.158 0.00 0.00 0.00 6.13
2103 2416 1.144936 CATCTCTCCTCCAACCCGC 59.855 63.158 0.00 0.00 0.00 6.13
2104 2417 0.978146 ACCATCTCTCCTCCAACCCG 60.978 60.000 0.00 0.00 0.00 5.28
2105 2418 0.543749 CACCATCTCTCCTCCAACCC 59.456 60.000 0.00 0.00 0.00 4.11
2106 2419 0.543749 CCACCATCTCTCCTCCAACC 59.456 60.000 0.00 0.00 0.00 3.77
2107 2420 0.107459 GCCACCATCTCTCCTCCAAC 60.107 60.000 0.00 0.00 0.00 3.77
2108 2421 1.274703 GGCCACCATCTCTCCTCCAA 61.275 60.000 0.00 0.00 0.00 3.53
2109 2422 1.690633 GGCCACCATCTCTCCTCCA 60.691 63.158 0.00 0.00 0.00 3.86
2110 2423 1.690633 TGGCCACCATCTCTCCTCC 60.691 63.158 0.00 0.00 0.00 4.30
2111 2424 1.524482 GTGGCCACCATCTCTCCTC 59.476 63.158 26.31 0.00 35.28 3.71
2112 2425 3.732938 GTGGCCACCATCTCTCCT 58.267 61.111 26.31 0.00 35.28 3.69
2122 2435 2.048127 GACGAGACTGGTGGCCAC 60.048 66.667 28.57 28.57 0.00 5.01
2123 2436 3.311110 GGACGAGACTGGTGGCCA 61.311 66.667 0.00 0.00 0.00 5.36
2124 2437 2.997897 AGGACGAGACTGGTGGCC 60.998 66.667 0.00 0.00 0.00 5.36
2125 2438 2.574399 GAGGACGAGACTGGTGGC 59.426 66.667 0.00 0.00 0.00 5.01
2126 2439 2.352032 GGGAGGACGAGACTGGTGG 61.352 68.421 0.00 0.00 0.00 4.61
2127 2440 0.972983 ATGGGAGGACGAGACTGGTG 60.973 60.000 0.00 0.00 0.00 4.17
2128 2441 0.684805 GATGGGAGGACGAGACTGGT 60.685 60.000 0.00 0.00 0.00 4.00
2129 2442 1.729470 CGATGGGAGGACGAGACTGG 61.729 65.000 0.00 0.00 0.00 4.00
2130 2443 1.730487 CGATGGGAGGACGAGACTG 59.270 63.158 0.00 0.00 0.00 3.51
2131 2444 2.122167 GCGATGGGAGGACGAGACT 61.122 63.158 0.00 0.00 0.00 3.24
2132 2445 2.413765 GCGATGGGAGGACGAGAC 59.586 66.667 0.00 0.00 0.00 3.36
2133 2446 3.209812 CGCGATGGGAGGACGAGA 61.210 66.667 0.00 0.00 0.00 4.04
2134 2447 4.271816 CCGCGATGGGAGGACGAG 62.272 72.222 8.23 0.00 37.92 4.18
2143 2456 4.969196 CGATCCCACCCGCGATGG 62.969 72.222 19.24 19.24 36.94 3.51
2622 2935 1.140134 TGGTTCCTTGGGGGAGAAGG 61.140 60.000 0.00 0.00 46.01 3.46
2623 2936 1.002857 ATGGTTCCTTGGGGGAGAAG 58.997 55.000 0.00 0.00 46.01 2.85
2624 2937 1.357761 GAATGGTTCCTTGGGGGAGAA 59.642 52.381 0.00 0.00 46.01 2.87
2625 2938 0.999712 GAATGGTTCCTTGGGGGAGA 59.000 55.000 0.00 0.00 46.01 3.71
2626 2939 1.002857 AGAATGGTTCCTTGGGGGAG 58.997 55.000 0.00 0.00 46.01 4.30
2627 2940 0.999712 GAGAATGGTTCCTTGGGGGA 59.000 55.000 0.00 0.00 43.41 4.81
2628 2941 1.002857 AGAGAATGGTTCCTTGGGGG 58.997 55.000 0.00 0.00 0.00 5.40
2629 2942 1.064389 GGAGAGAATGGTTCCTTGGGG 60.064 57.143 0.00 0.00 0.00 4.96
2630 2943 1.635487 TGGAGAGAATGGTTCCTTGGG 59.365 52.381 0.00 0.00 32.12 4.12
2631 2944 2.619074 GGTGGAGAGAATGGTTCCTTGG 60.619 54.545 0.00 0.00 32.12 3.61
2632 2945 2.307098 AGGTGGAGAGAATGGTTCCTTG 59.693 50.000 0.00 0.00 32.12 3.61
2633 2946 2.637165 AGGTGGAGAGAATGGTTCCTT 58.363 47.619 0.00 0.00 32.12 3.36
2634 2947 2.350863 AGGTGGAGAGAATGGTTCCT 57.649 50.000 0.00 0.00 32.12 3.36
2635 2948 2.573915 AGAAGGTGGAGAGAATGGTTCC 59.426 50.000 0.00 0.00 0.00 3.62
2636 2949 3.369997 GGAGAAGGTGGAGAGAATGGTTC 60.370 52.174 0.00 0.00 0.00 3.62
2637 2950 2.573915 GGAGAAGGTGGAGAGAATGGTT 59.426 50.000 0.00 0.00 0.00 3.67
2638 2951 2.192263 GGAGAAGGTGGAGAGAATGGT 58.808 52.381 0.00 0.00 0.00 3.55
2639 2952 2.998316 GGAGAAGGTGGAGAGAATGG 57.002 55.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.