Multiple sequence alignment - TraesCS3B01G117000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G117000 chr3B 100.000 7971 0 0 1 7971 83912735 83904765 0.000000e+00 14720.0
1 TraesCS3B01G117000 chr3D 94.611 2208 74 23 1184 3364 53491945 53489756 0.000000e+00 3376.0
2 TraesCS3B01G117000 chr3D 93.141 2085 102 20 5896 7971 53487063 53485011 0.000000e+00 3020.0
3 TraesCS3B01G117000 chr3D 96.140 1658 48 5 4429 6076 53488480 53486829 0.000000e+00 2693.0
4 TraesCS3B01G117000 chr3D 96.049 1215 33 5 3374 4574 53489681 53488468 0.000000e+00 1964.0
5 TraesCS3B01G117000 chr3D 91.355 937 30 17 312 1235 53492847 53491949 0.000000e+00 1234.0
6 TraesCS3B01G117000 chr3A 94.843 2133 70 18 1256 3364 64794082 64791966 0.000000e+00 3293.0
7 TraesCS3B01G117000 chr3A 92.973 2092 107 23 5896 7971 64789271 64787204 0.000000e+00 3013.0
8 TraesCS3B01G117000 chr3A 95.783 1660 52 5 4429 6076 64790690 64789037 0.000000e+00 2662.0
9 TraesCS3B01G117000 chr3A 95.967 1215 34 5 3374 4574 64791891 64790678 0.000000e+00 1958.0
10 TraesCS3B01G117000 chr3A 88.196 1042 27 25 320 1332 64795013 64794039 0.000000e+00 1155.0
11 TraesCS3B01G117000 chr3A 89.412 85 8 1 210 293 733919495 733919411 1.090000e-18 106.0
12 TraesCS3B01G117000 chrUn 98.313 415 7 0 1583 1997 477248799 477249213 0.000000e+00 728.0
13 TraesCS3B01G117000 chr4A 92.517 294 20 1 1 292 655265626 655265333 3.440000e-113 420.0
14 TraesCS3B01G117000 chr4A 88.629 299 28 5 1 294 647491930 647492227 7.610000e-95 359.0
15 TraesCS3B01G117000 chr4A 83.495 103 15 2 196 296 647881268 647881166 2.370000e-15 95.3
16 TraesCS3B01G117000 chr2B 88.542 96 9 1 201 294 469049674 469049769 1.820000e-21 115.0
17 TraesCS3B01G117000 chr4B 87.234 94 10 2 206 297 442420850 442420943 1.090000e-18 106.0
18 TraesCS3B01G117000 chr2A 87.912 91 10 1 206 295 429122547 429122637 1.090000e-18 106.0
19 TraesCS3B01G117000 chr5A 86.316 95 12 1 201 294 429094146 429094052 1.420000e-17 102.0
20 TraesCS3B01G117000 chr1B 86.813 91 11 1 206 295 317557170 317557260 5.090000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G117000 chr3B 83904765 83912735 7970 True 14720.0 14720 100.0000 1 7971 1 chr3B.!!$R1 7970
1 TraesCS3B01G117000 chr3D 53485011 53492847 7836 True 2457.4 3376 94.2592 312 7971 5 chr3D.!!$R1 7659
2 TraesCS3B01G117000 chr3A 64787204 64795013 7809 True 2416.2 3293 93.5524 320 7971 5 chr3A.!!$R2 7651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.034896 GGGGAAAGACGAAGCAGTCA 59.965 55.0 9.16 0.00 43.24 3.41 F
231 232 0.035317 TGTGGCCTACTGCTCAGTTG 59.965 55.0 3.32 6.19 42.54 3.16 F
232 233 0.321671 GTGGCCTACTGCTCAGTTGA 59.678 55.0 3.32 0.00 42.54 3.18 F
1737 1875 0.329596 AGGGAACAAGGATGCCTCAC 59.670 55.0 0.00 0.00 30.89 3.51 F
2286 2424 0.391661 CACCAGGTCGACCTCCAATG 60.392 60.0 34.28 23.32 46.65 2.82 F
2943 3086 0.468226 TCCCAAGTGTCGCTTCAGTT 59.532 50.0 0.00 0.00 34.69 3.16 F
4020 4241 0.037877 AGTGGCTTTCTGCAGATGCT 59.962 50.0 28.98 15.33 45.15 3.79 F
5123 5618 0.037590 TCACCCCTTGTGTATGGTGC 59.962 55.0 2.69 0.00 46.22 5.01 F
5888 6383 0.032813 AGATGGGCCAGGTGGATTTG 60.033 55.0 13.78 0.00 37.39 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1938 0.039708 GAGGCTGTGAAGCTTGCAAC 60.040 55.0 2.10 0.0 34.73 4.17 R
1941 2079 0.392193 CTCCTGCATCAACCTTCGCT 60.392 55.0 0.00 0.0 0.00 4.93 R
2214 2352 0.397187 TAGCCAGTTGTTGCCGGTAA 59.603 50.0 0.00 0.0 0.00 2.85 R
2768 2911 1.075601 TGGGCCATTCCTCATATCCC 58.924 55.0 0.00 0.0 34.39 3.85 R
3790 4008 0.036010 ATGTCACTACACTGCCCAGC 60.036 55.0 0.00 0.0 38.78 4.85 R
4589 5072 0.109342 ACTCCAGCAACAGAACCCAG 59.891 55.0 0.00 0.0 0.00 4.45 R
5323 5818 0.834687 TACCAGCCCGAAACTGACCT 60.835 55.0 0.00 0.0 37.32 3.85 R
6104 6626 0.033109 CCCTCCCTTCCACCAAATCC 60.033 60.0 0.00 0.0 0.00 3.01 R
7820 8351 0.251916 CAGGAATACGGCTGGTTCCA 59.748 55.0 25.12 0.0 43.01 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.062971 TGGAGATGTAGACGTACCCC 57.937 55.000 0.00 0.00 0.00 4.95
20 21 1.285667 TGGAGATGTAGACGTACCCCA 59.714 52.381 0.00 0.00 0.00 4.96
21 22 2.291735 TGGAGATGTAGACGTACCCCAA 60.292 50.000 0.00 0.00 0.00 4.12
22 23 2.963782 GGAGATGTAGACGTACCCCAAT 59.036 50.000 0.00 0.00 0.00 3.16
23 24 3.243771 GGAGATGTAGACGTACCCCAATG 60.244 52.174 0.00 0.00 0.00 2.82
24 25 2.698797 AGATGTAGACGTACCCCAATGG 59.301 50.000 0.00 0.00 41.37 3.16
34 35 3.069946 CCCAATGGGCGCACATGT 61.070 61.111 28.71 13.70 35.35 3.21
35 36 2.491152 CCAATGGGCGCACATGTC 59.509 61.111 28.71 0.00 0.00 3.06
36 37 2.100797 CAATGGGCGCACATGTCG 59.899 61.111 28.71 14.34 0.00 4.35
44 45 2.383170 CGCACATGTCGCTAATGGT 58.617 52.632 15.20 0.00 0.00 3.55
45 46 0.726827 CGCACATGTCGCTAATGGTT 59.273 50.000 15.20 0.00 0.00 3.67
46 47 1.529622 CGCACATGTCGCTAATGGTTG 60.530 52.381 15.20 0.00 0.00 3.77
47 48 1.737236 GCACATGTCGCTAATGGTTGA 59.263 47.619 11.51 0.00 0.00 3.18
48 49 2.161410 GCACATGTCGCTAATGGTTGAA 59.839 45.455 11.51 0.00 0.00 2.69
49 50 3.181497 GCACATGTCGCTAATGGTTGAAT 60.181 43.478 11.51 0.00 0.00 2.57
50 51 4.675146 GCACATGTCGCTAATGGTTGAATT 60.675 41.667 11.51 0.00 0.00 2.17
51 52 5.401550 CACATGTCGCTAATGGTTGAATTT 58.598 37.500 0.00 0.00 0.00 1.82
52 53 5.863397 CACATGTCGCTAATGGTTGAATTTT 59.137 36.000 0.00 0.00 0.00 1.82
53 54 7.026562 CACATGTCGCTAATGGTTGAATTTTA 58.973 34.615 0.00 0.00 0.00 1.52
54 55 7.701924 CACATGTCGCTAATGGTTGAATTTTAT 59.298 33.333 0.00 0.00 0.00 1.40
55 56 8.250332 ACATGTCGCTAATGGTTGAATTTTATT 58.750 29.630 0.00 0.00 0.00 1.40
56 57 8.533965 CATGTCGCTAATGGTTGAATTTTATTG 58.466 33.333 0.00 0.00 0.00 1.90
57 58 7.598278 TGTCGCTAATGGTTGAATTTTATTGT 58.402 30.769 0.00 0.00 0.00 2.71
58 59 7.753132 TGTCGCTAATGGTTGAATTTTATTGTC 59.247 33.333 0.00 0.00 0.00 3.18
59 60 7.968405 GTCGCTAATGGTTGAATTTTATTGTCT 59.032 33.333 0.00 0.00 0.00 3.41
60 61 7.967854 TCGCTAATGGTTGAATTTTATTGTCTG 59.032 33.333 0.00 0.00 0.00 3.51
61 62 7.220683 CGCTAATGGTTGAATTTTATTGTCTGG 59.779 37.037 0.00 0.00 0.00 3.86
62 63 7.492344 GCTAATGGTTGAATTTTATTGTCTGGG 59.508 37.037 0.00 0.00 0.00 4.45
63 64 7.552050 AATGGTTGAATTTTATTGTCTGGGA 57.448 32.000 0.00 0.00 0.00 4.37
64 65 6.588719 TGGTTGAATTTTATTGTCTGGGAG 57.411 37.500 0.00 0.00 0.00 4.30
65 66 6.074648 TGGTTGAATTTTATTGTCTGGGAGT 58.925 36.000 0.00 0.00 0.00 3.85
66 67 7.235079 TGGTTGAATTTTATTGTCTGGGAGTA 58.765 34.615 0.00 0.00 0.00 2.59
67 68 7.726291 TGGTTGAATTTTATTGTCTGGGAGTAA 59.274 33.333 0.00 0.00 0.00 2.24
68 69 8.749354 GGTTGAATTTTATTGTCTGGGAGTAAT 58.251 33.333 0.00 0.00 0.00 1.89
69 70 9.788960 GTTGAATTTTATTGTCTGGGAGTAATC 57.211 33.333 0.00 0.00 0.00 1.75
70 71 9.527157 TTGAATTTTATTGTCTGGGAGTAATCA 57.473 29.630 0.00 0.00 0.00 2.57
71 72 9.699410 TGAATTTTATTGTCTGGGAGTAATCAT 57.301 29.630 0.00 0.00 0.00 2.45
72 73 9.956720 GAATTTTATTGTCTGGGAGTAATCATG 57.043 33.333 0.00 0.00 0.00 3.07
73 74 7.880160 TTTTATTGTCTGGGAGTAATCATGG 57.120 36.000 0.00 0.00 0.00 3.66
74 75 6.575244 TTATTGTCTGGGAGTAATCATGGT 57.425 37.500 0.00 0.00 0.00 3.55
75 76 4.487714 TTGTCTGGGAGTAATCATGGTC 57.512 45.455 0.00 0.00 0.00 4.02
76 77 3.449918 TGTCTGGGAGTAATCATGGTCA 58.550 45.455 0.00 0.00 0.00 4.02
77 78 4.040047 TGTCTGGGAGTAATCATGGTCAT 58.960 43.478 0.00 0.00 0.00 3.06
78 79 4.101585 TGTCTGGGAGTAATCATGGTCATC 59.898 45.833 0.00 0.00 0.00 2.92
79 80 4.101585 GTCTGGGAGTAATCATGGTCATCA 59.898 45.833 0.00 0.00 0.00 3.07
80 81 4.346127 TCTGGGAGTAATCATGGTCATCAG 59.654 45.833 0.00 0.00 0.00 2.90
81 82 4.040047 TGGGAGTAATCATGGTCATCAGT 58.960 43.478 0.00 0.00 0.00 3.41
82 83 4.474651 TGGGAGTAATCATGGTCATCAGTT 59.525 41.667 0.00 0.00 0.00 3.16
83 84 5.665360 TGGGAGTAATCATGGTCATCAGTTA 59.335 40.000 0.00 0.00 0.00 2.24
84 85 6.329986 TGGGAGTAATCATGGTCATCAGTTAT 59.670 38.462 0.00 0.00 0.00 1.89
85 86 6.652481 GGGAGTAATCATGGTCATCAGTTATG 59.348 42.308 0.00 0.00 36.88 1.90
86 87 7.445121 GGAGTAATCATGGTCATCAGTTATGA 58.555 38.462 0.00 0.00 42.48 2.15
87 88 7.933577 GGAGTAATCATGGTCATCAGTTATGAA 59.066 37.037 0.00 0.00 46.17 2.57
88 89 9.330063 GAGTAATCATGGTCATCAGTTATGAAA 57.670 33.333 0.00 0.00 46.17 2.69
89 90 9.334947 AGTAATCATGGTCATCAGTTATGAAAG 57.665 33.333 0.00 0.00 46.17 2.62
90 91 7.578310 AATCATGGTCATCAGTTATGAAAGG 57.422 36.000 0.00 0.00 46.17 3.11
91 92 5.439721 TCATGGTCATCAGTTATGAAAGGG 58.560 41.667 0.00 0.00 46.17 3.95
92 93 4.235079 TGGTCATCAGTTATGAAAGGGG 57.765 45.455 0.00 0.00 46.17 4.79
93 94 3.849574 TGGTCATCAGTTATGAAAGGGGA 59.150 43.478 0.00 0.00 46.17 4.81
94 95 4.290985 TGGTCATCAGTTATGAAAGGGGAA 59.709 41.667 0.00 0.00 46.17 3.97
95 96 5.222233 TGGTCATCAGTTATGAAAGGGGAAA 60.222 40.000 0.00 0.00 46.17 3.13
96 97 5.358160 GGTCATCAGTTATGAAAGGGGAAAG 59.642 44.000 0.00 0.00 46.17 2.62
97 98 6.180472 GTCATCAGTTATGAAAGGGGAAAGA 58.820 40.000 0.00 0.00 46.17 2.52
98 99 6.094186 GTCATCAGTTATGAAAGGGGAAAGAC 59.906 42.308 0.00 0.00 46.17 3.01
99 100 4.575885 TCAGTTATGAAAGGGGAAAGACG 58.424 43.478 0.00 0.00 30.61 4.18
100 101 4.285003 TCAGTTATGAAAGGGGAAAGACGA 59.715 41.667 0.00 0.00 30.61 4.20
101 102 5.001232 CAGTTATGAAAGGGGAAAGACGAA 58.999 41.667 0.00 0.00 0.00 3.85
102 103 5.122396 CAGTTATGAAAGGGGAAAGACGAAG 59.878 44.000 0.00 0.00 0.00 3.79
103 104 1.892209 TGAAAGGGGAAAGACGAAGC 58.108 50.000 0.00 0.00 0.00 3.86
104 105 1.142060 TGAAAGGGGAAAGACGAAGCA 59.858 47.619 0.00 0.00 0.00 3.91
105 106 1.807142 GAAAGGGGAAAGACGAAGCAG 59.193 52.381 0.00 0.00 0.00 4.24
106 107 0.765510 AAGGGGAAAGACGAAGCAGT 59.234 50.000 0.00 0.00 0.00 4.40
107 108 0.321996 AGGGGAAAGACGAAGCAGTC 59.678 55.000 0.00 0.00 41.23 3.51
108 109 0.034896 GGGGAAAGACGAAGCAGTCA 59.965 55.000 9.16 0.00 43.24 3.41
109 110 1.433534 GGGAAAGACGAAGCAGTCAG 58.566 55.000 9.16 0.00 43.24 3.51
110 111 0.793250 GGAAAGACGAAGCAGTCAGC 59.207 55.000 9.16 0.00 43.24 4.26
119 120 3.993535 GCAGTCAGCTCCCTTTGG 58.006 61.111 0.00 0.00 41.15 3.28
120 121 1.073897 GCAGTCAGCTCCCTTTGGT 59.926 57.895 0.00 0.00 41.15 3.67
121 122 1.239968 GCAGTCAGCTCCCTTTGGTG 61.240 60.000 0.00 0.00 41.15 4.17
122 123 0.607489 CAGTCAGCTCCCTTTGGTGG 60.607 60.000 0.00 0.00 34.15 4.61
123 124 1.973812 GTCAGCTCCCTTTGGTGGC 60.974 63.158 0.00 0.00 34.15 5.01
124 125 2.677875 CAGCTCCCTTTGGTGGCC 60.678 66.667 0.00 0.00 33.97 5.36
125 126 3.185203 AGCTCCCTTTGGTGGCCA 61.185 61.111 0.00 0.00 33.97 5.36
126 127 2.677875 GCTCCCTTTGGTGGCCAG 60.678 66.667 5.11 0.00 33.81 4.85
127 128 2.036256 CTCCCTTTGGTGGCCAGG 59.964 66.667 5.11 2.49 33.81 4.45
128 129 3.589542 TCCCTTTGGTGGCCAGGG 61.590 66.667 19.01 19.01 39.54 4.45
129 130 3.589542 CCCTTTGGTGGCCAGGGA 61.590 66.667 20.15 0.00 40.32 4.20
130 131 2.525592 CCTTTGGTGGCCAGGGAA 59.474 61.111 5.11 0.00 33.81 3.97
131 132 1.607467 CCTTTGGTGGCCAGGGAAG 60.607 63.158 5.11 10.34 33.81 3.46
132 133 1.607467 CTTTGGTGGCCAGGGAAGG 60.607 63.158 5.11 0.00 33.81 3.46
140 141 2.125106 CCAGGGAAGGCTACGCAC 60.125 66.667 0.00 0.00 0.00 5.34
141 142 2.662596 CAGGGAAGGCTACGCACA 59.337 61.111 0.00 0.00 0.00 4.57
142 143 1.448540 CAGGGAAGGCTACGCACAG 60.449 63.158 0.00 0.00 0.00 3.66
143 144 1.609501 AGGGAAGGCTACGCACAGA 60.610 57.895 0.00 0.00 0.00 3.41
144 145 1.192146 AGGGAAGGCTACGCACAGAA 61.192 55.000 0.00 0.00 0.00 3.02
145 146 0.741221 GGGAAGGCTACGCACAGAAG 60.741 60.000 0.00 0.00 0.00 2.85
146 147 0.741221 GGAAGGCTACGCACAGAAGG 60.741 60.000 0.00 0.00 0.00 3.46
147 148 0.246635 GAAGGCTACGCACAGAAGGA 59.753 55.000 0.00 0.00 0.00 3.36
148 149 0.685097 AAGGCTACGCACAGAAGGAA 59.315 50.000 0.00 0.00 0.00 3.36
149 150 0.905357 AGGCTACGCACAGAAGGAAT 59.095 50.000 0.00 0.00 0.00 3.01
150 151 1.279271 AGGCTACGCACAGAAGGAATT 59.721 47.619 0.00 0.00 0.00 2.17
151 152 2.084546 GGCTACGCACAGAAGGAATTT 58.915 47.619 0.00 0.00 0.00 1.82
152 153 3.055385 AGGCTACGCACAGAAGGAATTTA 60.055 43.478 0.00 0.00 0.00 1.40
153 154 3.687698 GGCTACGCACAGAAGGAATTTAA 59.312 43.478 0.00 0.00 0.00 1.52
154 155 4.155280 GGCTACGCACAGAAGGAATTTAAA 59.845 41.667 0.00 0.00 0.00 1.52
155 156 5.163652 GGCTACGCACAGAAGGAATTTAAAT 60.164 40.000 0.00 0.00 0.00 1.40
156 157 6.322491 GCTACGCACAGAAGGAATTTAAATT 58.678 36.000 13.24 13.24 0.00 1.82
157 158 6.251376 GCTACGCACAGAAGGAATTTAAATTG 59.749 38.462 17.98 6.01 0.00 2.32
158 159 4.923281 ACGCACAGAAGGAATTTAAATTGC 59.077 37.500 21.09 21.09 37.04 3.56
159 160 4.922692 CGCACAGAAGGAATTTAAATTGCA 59.077 37.500 27.58 0.00 38.95 4.08
160 161 5.577945 CGCACAGAAGGAATTTAAATTGCAT 59.422 36.000 27.58 19.43 38.95 3.96
161 162 6.751425 CGCACAGAAGGAATTTAAATTGCATA 59.249 34.615 27.58 0.00 38.95 3.14
162 163 7.275341 CGCACAGAAGGAATTTAAATTGCATAA 59.725 33.333 27.58 0.00 38.95 1.90
163 164 8.934825 GCACAGAAGGAATTTAAATTGCATAAA 58.065 29.630 27.58 0.00 38.95 1.40
180 181 9.657419 ATTGCATAAAAAGGGAAGAAAATACAG 57.343 29.630 0.00 0.00 0.00 2.74
181 182 8.415950 TGCATAAAAAGGGAAGAAAATACAGA 57.584 30.769 0.00 0.00 0.00 3.41
182 183 8.303876 TGCATAAAAAGGGAAGAAAATACAGAC 58.696 33.333 0.00 0.00 0.00 3.51
183 184 7.484959 GCATAAAAAGGGAAGAAAATACAGACG 59.515 37.037 0.00 0.00 0.00 4.18
184 185 6.954487 AAAAAGGGAAGAAAATACAGACGT 57.046 33.333 0.00 0.00 0.00 4.34
185 186 5.941948 AAAGGGAAGAAAATACAGACGTG 57.058 39.130 0.00 0.00 0.00 4.49
186 187 3.939066 AGGGAAGAAAATACAGACGTGG 58.061 45.455 0.00 0.00 0.00 4.94
187 188 2.418976 GGGAAGAAAATACAGACGTGGC 59.581 50.000 0.00 0.00 0.00 5.01
188 189 3.071479 GGAAGAAAATACAGACGTGGCA 58.929 45.455 0.00 0.00 0.00 4.92
189 190 3.689649 GGAAGAAAATACAGACGTGGCAT 59.310 43.478 0.00 0.00 0.00 4.40
190 191 4.201822 GGAAGAAAATACAGACGTGGCATC 60.202 45.833 0.00 0.00 0.00 3.91
191 192 3.937814 AGAAAATACAGACGTGGCATCA 58.062 40.909 0.00 0.00 0.00 3.07
192 193 4.517285 AGAAAATACAGACGTGGCATCAT 58.483 39.130 0.00 0.00 0.00 2.45
193 194 4.333649 AGAAAATACAGACGTGGCATCATG 59.666 41.667 0.00 0.00 36.05 3.07
194 195 1.586422 ATACAGACGTGGCATCATGC 58.414 50.000 0.00 0.00 44.08 4.06
207 208 4.640805 GCATCATGCAAGACAAAAGTTG 57.359 40.909 4.20 0.00 44.26 3.16
208 209 4.053295 GCATCATGCAAGACAAAAGTTGT 58.947 39.130 4.20 0.00 44.87 3.32
209 210 4.508861 GCATCATGCAAGACAAAAGTTGTT 59.491 37.500 4.20 0.00 43.31 2.83
210 211 5.557514 GCATCATGCAAGACAAAAGTTGTTG 60.558 40.000 4.20 0.00 43.31 3.33
211 212 5.321959 TCATGCAAGACAAAAGTTGTTGA 57.678 34.783 0.00 0.00 45.52 3.18
212 213 5.904941 TCATGCAAGACAAAAGTTGTTGAT 58.095 33.333 0.00 0.00 45.52 2.57
213 214 5.749588 TCATGCAAGACAAAAGTTGTTGATG 59.250 36.000 0.00 0.00 45.52 3.07
214 215 5.070770 TGCAAGACAAAAGTTGTTGATGT 57.929 34.783 0.00 0.00 45.52 3.06
215 216 4.863689 TGCAAGACAAAAGTTGTTGATGTG 59.136 37.500 0.00 0.00 45.52 3.21
216 217 4.268405 GCAAGACAAAAGTTGTTGATGTGG 59.732 41.667 0.00 0.00 45.52 4.17
217 218 4.045636 AGACAAAAGTTGTTGATGTGGC 57.954 40.909 0.00 0.00 45.52 5.01
218 219 3.123050 GACAAAAGTTGTTGATGTGGCC 58.877 45.455 0.00 0.00 45.52 5.36
219 220 2.765699 ACAAAAGTTGTTGATGTGGCCT 59.234 40.909 3.32 0.00 42.22 5.19
220 221 3.957497 ACAAAAGTTGTTGATGTGGCCTA 59.043 39.130 3.32 0.00 42.22 3.93
221 222 4.202111 ACAAAAGTTGTTGATGTGGCCTAC 60.202 41.667 3.32 0.69 42.22 3.18
222 223 3.508845 AAGTTGTTGATGTGGCCTACT 57.491 42.857 3.32 0.00 0.00 2.57
223 224 2.783135 AGTTGTTGATGTGGCCTACTG 58.217 47.619 3.32 0.00 0.00 2.74
224 225 1.200020 GTTGTTGATGTGGCCTACTGC 59.800 52.381 3.32 0.00 40.16 4.40
225 226 0.692476 TGTTGATGTGGCCTACTGCT 59.308 50.000 3.32 0.00 40.92 4.24
226 227 1.339055 TGTTGATGTGGCCTACTGCTC 60.339 52.381 3.32 1.04 40.92 4.26
227 228 0.983467 TTGATGTGGCCTACTGCTCA 59.017 50.000 3.32 3.50 40.92 4.26
228 229 0.538584 TGATGTGGCCTACTGCTCAG 59.461 55.000 3.32 0.00 40.92 3.35
229 230 0.539051 GATGTGGCCTACTGCTCAGT 59.461 55.000 3.32 7.73 45.02 3.41
230 231 0.987294 ATGTGGCCTACTGCTCAGTT 59.013 50.000 3.32 0.00 42.54 3.16
231 232 0.035317 TGTGGCCTACTGCTCAGTTG 59.965 55.000 3.32 6.19 42.54 3.16
232 233 0.321671 GTGGCCTACTGCTCAGTTGA 59.678 55.000 3.32 0.00 42.54 3.18
233 234 1.055849 TGGCCTACTGCTCAGTTGAA 58.944 50.000 3.32 0.00 42.54 2.69
234 235 1.630369 TGGCCTACTGCTCAGTTGAAT 59.370 47.619 3.32 0.00 42.54 2.57
235 236 2.837591 TGGCCTACTGCTCAGTTGAATA 59.162 45.455 3.32 0.00 42.54 1.75
236 237 3.263170 TGGCCTACTGCTCAGTTGAATAA 59.737 43.478 3.32 0.00 42.54 1.40
237 238 3.623510 GGCCTACTGCTCAGTTGAATAAC 59.376 47.826 7.92 0.00 42.54 1.89
238 239 4.508662 GCCTACTGCTCAGTTGAATAACT 58.491 43.478 7.92 0.00 41.61 2.24
239 240 4.938226 GCCTACTGCTCAGTTGAATAACTT 59.062 41.667 7.92 0.00 40.10 2.66
240 241 5.163814 GCCTACTGCTCAGTTGAATAACTTG 60.164 44.000 7.92 0.00 40.10 3.16
241 242 4.756084 ACTGCTCAGTTGAATAACTTGC 57.244 40.909 0.00 0.00 44.57 4.01
242 243 4.136796 ACTGCTCAGTTGAATAACTTGCA 58.863 39.130 13.28 13.28 44.57 4.08
243 244 4.763793 ACTGCTCAGTTGAATAACTTGCAT 59.236 37.500 13.92 6.28 44.57 3.96
244 245 5.050644 TGCTCAGTTGAATAACTTGCATG 57.949 39.130 11.17 0.00 44.57 4.06
245 246 4.520111 TGCTCAGTTGAATAACTTGCATGT 59.480 37.500 0.00 0.00 44.57 3.21
246 247 5.009911 TGCTCAGTTGAATAACTTGCATGTT 59.990 36.000 20.30 20.30 44.57 2.71
247 248 6.206438 TGCTCAGTTGAATAACTTGCATGTTA 59.794 34.615 22.87 22.87 44.57 2.41
248 249 7.083858 GCTCAGTTGAATAACTTGCATGTTAA 58.916 34.615 24.00 10.73 44.57 2.01
249 250 7.272084 GCTCAGTTGAATAACTTGCATGTTAAG 59.728 37.037 24.00 16.39 44.57 1.85
250 251 8.389779 TCAGTTGAATAACTTGCATGTTAAGA 57.610 30.769 24.00 8.68 44.57 2.10
251 252 8.506437 TCAGTTGAATAACTTGCATGTTAAGAG 58.494 33.333 24.00 12.64 44.57 2.85
252 253 8.506437 CAGTTGAATAACTTGCATGTTAAGAGA 58.494 33.333 24.00 8.03 44.57 3.10
253 254 9.066892 AGTTGAATAACTTGCATGTTAAGAGAA 57.933 29.630 24.00 13.91 44.57 2.87
254 255 9.677567 GTTGAATAACTTGCATGTTAAGAGAAA 57.322 29.630 24.00 13.76 36.22 2.52
260 261 8.409358 AACTTGCATGTTAAGAGAAATAAGGT 57.591 30.769 15.73 0.00 0.00 3.50
261 262 9.515226 AACTTGCATGTTAAGAGAAATAAGGTA 57.485 29.630 15.73 0.00 0.00 3.08
262 263 9.167311 ACTTGCATGTTAAGAGAAATAAGGTAG 57.833 33.333 15.70 0.00 0.00 3.18
263 264 9.167311 CTTGCATGTTAAGAGAAATAAGGTAGT 57.833 33.333 6.11 0.00 0.00 2.73
265 266 9.817809 TGCATGTTAAGAGAAATAAGGTAGTAG 57.182 33.333 0.00 0.00 0.00 2.57
266 267 9.262358 GCATGTTAAGAGAAATAAGGTAGTAGG 57.738 37.037 0.00 0.00 0.00 3.18
267 268 9.765795 CATGTTAAGAGAAATAAGGTAGTAGGG 57.234 37.037 0.00 0.00 0.00 3.53
268 269 9.725206 ATGTTAAGAGAAATAAGGTAGTAGGGA 57.275 33.333 0.00 0.00 0.00 4.20
269 270 9.725206 TGTTAAGAGAAATAAGGTAGTAGGGAT 57.275 33.333 0.00 0.00 0.00 3.85
270 271 9.984190 GTTAAGAGAAATAAGGTAGTAGGGATG 57.016 37.037 0.00 0.00 0.00 3.51
271 272 9.947189 TTAAGAGAAATAAGGTAGTAGGGATGA 57.053 33.333 0.00 0.00 0.00 2.92
272 273 8.855804 AAGAGAAATAAGGTAGTAGGGATGAA 57.144 34.615 0.00 0.00 0.00 2.57
273 274 8.252624 AGAGAAATAAGGTAGTAGGGATGAAC 57.747 38.462 0.00 0.00 0.00 3.18
274 275 8.068733 AGAGAAATAAGGTAGTAGGGATGAACT 58.931 37.037 0.00 0.00 0.00 3.01
275 276 9.364653 GAGAAATAAGGTAGTAGGGATGAACTA 57.635 37.037 0.00 0.00 0.00 2.24
276 277 9.900112 AGAAATAAGGTAGTAGGGATGAACTAT 57.100 33.333 0.00 0.00 0.00 2.12
281 282 8.493787 AAGGTAGTAGGGATGAACTATTTAGG 57.506 38.462 0.00 0.00 0.00 2.69
282 283 7.602868 AGGTAGTAGGGATGAACTATTTAGGT 58.397 38.462 0.00 0.00 0.00 3.08
283 284 8.740512 AGGTAGTAGGGATGAACTATTTAGGTA 58.259 37.037 0.00 0.00 0.00 3.08
284 285 9.544579 GGTAGTAGGGATGAACTATTTAGGTAT 57.455 37.037 0.00 0.00 0.00 2.73
305 306 9.035890 AGGTATTATAGATTCATGTCGAATGGA 57.964 33.333 0.00 0.00 44.65 3.41
306 307 9.653287 GGTATTATAGATTCATGTCGAATGGAA 57.347 33.333 0.00 0.00 44.65 3.53
358 359 3.770263 TTCCGATACAACGTCGAATCT 57.230 42.857 0.00 0.00 41.40 2.40
468 470 1.271379 CCGTCAAAACCCATCTCCTGT 60.271 52.381 0.00 0.00 0.00 4.00
507 509 2.606826 GTCTCCTCCACCCCCGTT 60.607 66.667 0.00 0.00 0.00 4.44
827 842 2.336809 GGGCTCTACCTCATCGCG 59.663 66.667 0.00 0.00 39.10 5.87
851 866 4.463879 CTGGCCTGCCGTCTCCAG 62.464 72.222 3.32 0.00 39.95 3.86
924 939 5.877012 AGCTTGTACTCATCCACTGTTTATG 59.123 40.000 0.00 0.00 0.00 1.90
952 967 2.420022 CTGGCTGTTTAATCCCGAACTG 59.580 50.000 0.00 0.00 0.00 3.16
967 982 3.308530 CGAACTGACCTTGGCAAAATTC 58.691 45.455 0.00 0.00 0.00 2.17
1125 1140 1.546961 ACTACTGGAACCCTGAGACG 58.453 55.000 0.00 0.00 0.00 4.18
1301 1385 1.450531 GGTCAGCAAGCACAGCAACT 61.451 55.000 0.00 0.00 0.00 3.16
1304 1388 2.122797 AGCAAGCACAGCAACTGCA 61.123 52.632 4.22 0.00 45.16 4.41
1317 1401 3.750130 AGCAACTGCAGTTTCAGTATCAG 59.250 43.478 29.23 15.35 45.77 2.90
1318 1402 3.669023 GCAACTGCAGTTTCAGTATCAGC 60.669 47.826 29.23 20.82 45.77 4.26
1319 1403 3.407424 ACTGCAGTTTCAGTATCAGCA 57.593 42.857 15.25 0.00 44.77 4.41
1320 1404 3.750130 AACTGCAGTTTCAGTATCAGCAG 59.250 43.478 26.36 9.67 45.77 4.24
1326 1410 2.019948 TTCAGTATCAGCAGCAGCAG 57.980 50.000 3.17 0.00 45.49 4.24
1365 1503 0.957395 AACAGATGCCGAACCAGCAG 60.957 55.000 0.00 0.00 44.90 4.24
1484 1622 0.690744 TATCAGGTAGGCCAGCAGCA 60.691 55.000 5.01 0.00 46.50 4.41
1515 1653 4.876107 CCGCAAACTCAGTATAATCAAGGT 59.124 41.667 0.00 0.00 0.00 3.50
1737 1875 0.329596 AGGGAACAAGGATGCCTCAC 59.670 55.000 0.00 0.00 30.89 3.51
1800 1938 2.677875 GCCCAGGCTTCACAAGGG 60.678 66.667 0.08 1.01 42.55 3.95
1915 2053 3.613030 CCACATCATGGTCATCTTGTCA 58.387 45.455 0.00 0.00 44.46 3.58
1941 2079 2.968574 ACATGGGCAACAAAATACCACA 59.031 40.909 0.00 0.00 39.74 4.17
1943 2081 1.342819 TGGGCAACAAAATACCACAGC 59.657 47.619 0.00 0.00 39.74 4.40
2049 2187 1.134220 TCAAACCAGACGTTGCCTTCT 60.134 47.619 0.00 0.00 33.93 2.85
2080 2218 2.874701 CGTCCTGAAGCCCATAATCAAG 59.125 50.000 0.00 0.00 0.00 3.02
2133 2271 1.470979 CCTGCAAAGCATCATCTTGGC 60.471 52.381 0.00 0.00 42.08 4.52
2178 2316 1.860676 ACGTTAGTTTCTTGAGCGCA 58.139 45.000 11.47 0.00 0.00 6.09
2214 2352 3.305720 TCAAGGCGGAGTGGATACTAAT 58.694 45.455 0.00 0.00 37.25 1.73
2271 2409 4.209538 CCAATCATATTGCTCCTTCACCA 58.790 43.478 0.00 0.00 0.00 4.17
2286 2424 0.391661 CACCAGGTCGACCTCCAATG 60.392 60.000 34.28 23.32 46.65 2.82
2298 2436 2.716424 ACCTCCAATGGGTTTCAAGAGA 59.284 45.455 0.00 0.00 32.46 3.10
2387 2525 1.074405 TCTCCATCAGCAGCCAAAACT 59.926 47.619 0.00 0.00 0.00 2.66
2404 2542 1.377994 CTTGCTGCTCTTCCACCCT 59.622 57.895 0.00 0.00 0.00 4.34
2412 2550 1.609072 GCTCTTCCACCCTCACAAAAC 59.391 52.381 0.00 0.00 0.00 2.43
2435 2573 5.861727 CCACCTGGTAATATACTACAACCC 58.138 45.833 0.00 0.00 0.00 4.11
2436 2574 5.605488 CCACCTGGTAATATACTACAACCCT 59.395 44.000 0.00 0.00 0.00 4.34
2437 2575 6.783977 CCACCTGGTAATATACTACAACCCTA 59.216 42.308 0.00 0.00 0.00 3.53
2439 2577 8.877195 CACCTGGTAATATACTACAACCCTATT 58.123 37.037 0.00 0.00 0.00 1.73
2520 2660 8.877779 CAAAACATTTTACATTTGTGGACAGAA 58.122 29.630 0.00 0.00 0.00 3.02
2544 2687 5.552178 AGAGTACATTGTGAAGTTCCTTCC 58.448 41.667 0.00 0.00 39.51 3.46
2644 2787 8.542497 AATATAAAAAGTCTCGCAACTGTGTA 57.458 30.769 0.00 0.00 0.00 2.90
2660 2803 8.936864 GCAACTGTGTATTTTCTTCTGTATACT 58.063 33.333 4.17 0.00 0.00 2.12
2732 2875 7.088589 ACAATCTCTCCGTTTATGAAATTGG 57.911 36.000 0.00 0.00 0.00 3.16
2749 2892 6.150976 TGAAATTGGCACCACTAACTCTATTG 59.849 38.462 0.00 0.00 0.00 1.90
2768 2911 8.352752 TCTATTGTTCATAATCTTGTACAGCG 57.647 34.615 0.00 0.00 30.14 5.18
2814 2957 3.756082 TCCCAGCCAGATAATTTTGGT 57.244 42.857 5.54 0.00 36.81 3.67
2887 3030 5.365619 GTCCATTTCCTATCGGAGCTTTAA 58.634 41.667 0.00 0.00 41.25 1.52
2943 3086 0.468226 TCCCAAGTGTCGCTTCAGTT 59.532 50.000 0.00 0.00 34.69 3.16
2995 3138 3.758023 TGCAGTGGTAATGACTCAATTGG 59.242 43.478 5.42 0.00 0.00 3.16
3086 3229 4.447138 TCTCCTTTTCTTTGCCCTGTTA 57.553 40.909 0.00 0.00 0.00 2.41
3100 3243 4.288626 TGCCCTGTTACCTTCTGAACTATT 59.711 41.667 0.00 0.00 0.00 1.73
3115 3258 6.649141 TCTGAACTATTGTTGACACGCTATTT 59.351 34.615 0.00 0.00 36.39 1.40
3138 3281 9.691362 ATTTCAAACGCAACTTAACAGATATTT 57.309 25.926 0.00 0.00 0.00 1.40
3221 3364 9.610705 GTCATTTATGTGATGCATATATCTCCT 57.389 33.333 0.00 0.00 39.56 3.69
3322 3465 7.604549 TCATGTGCAAATACATTCTGTTTGAT 58.395 30.769 0.00 0.00 39.17 2.57
3335 3478 9.224267 ACATTCTGTTTGATATACTATGATGGC 57.776 33.333 0.00 0.00 0.00 4.40
3338 3481 8.837788 TCTGTTTGATATACTATGATGGCAAG 57.162 34.615 0.00 0.00 0.00 4.01
3366 3509 3.860641 CTTGTTTGTTTGGCAAGGTTCT 58.139 40.909 0.00 0.00 38.47 3.01
3367 3510 5.004922 CTTGTTTGTTTGGCAAGGTTCTA 57.995 39.130 0.00 0.00 38.47 2.10
3368 3511 5.600696 CTTGTTTGTTTGGCAAGGTTCTAT 58.399 37.500 0.00 0.00 38.47 1.98
3369 3512 5.606348 TGTTTGTTTGGCAAGGTTCTATT 57.394 34.783 0.00 0.00 38.47 1.73
3370 3513 5.596845 TGTTTGTTTGGCAAGGTTCTATTC 58.403 37.500 0.00 0.00 38.47 1.75
3371 3514 5.127845 TGTTTGTTTGGCAAGGTTCTATTCA 59.872 36.000 0.00 0.00 38.47 2.57
3373 3516 5.860941 TGTTTGGCAAGGTTCTATTCAAA 57.139 34.783 0.00 0.00 0.00 2.69
3374 3517 5.596845 TGTTTGGCAAGGTTCTATTCAAAC 58.403 37.500 0.00 0.00 41.31 2.93
3375 3518 5.127845 TGTTTGGCAAGGTTCTATTCAAACA 59.872 36.000 12.67 12.67 45.31 2.83
3376 3519 5.860941 TTGGCAAGGTTCTATTCAAACAA 57.139 34.783 0.00 0.00 0.00 2.83
3377 3520 5.452078 TGGCAAGGTTCTATTCAAACAAG 57.548 39.130 0.00 0.00 0.00 3.16
3456 3663 7.672983 TCACCTGTTGATTTCTAGTTGAATC 57.327 36.000 8.38 8.38 34.24 2.52
3470 3677 9.823647 TTCTAGTTGAATCACCAATCTCTTATC 57.176 33.333 0.00 0.00 0.00 1.75
3534 3741 6.040247 CCCGTTTCTTAAAAATATTCAGGGC 58.960 40.000 0.00 0.00 0.00 5.19
3644 3851 8.050778 TGTATTTTAGTATTGGTGCTTGGAAG 57.949 34.615 0.00 0.00 0.00 3.46
3687 3905 0.630673 TCCATTGTTAGCATGGGCCT 59.369 50.000 4.53 0.00 42.56 5.19
3697 3915 1.188863 GCATGGGCCTCAACAAAGAT 58.811 50.000 4.53 0.00 0.00 2.40
3729 3947 8.771766 AGAAGTCAAAACTAGAATTTTCGGTAC 58.228 33.333 0.00 0.00 33.48 3.34
3790 4008 4.809426 CCCTAATTTAACTAGTGCCGTCAG 59.191 45.833 0.00 0.00 0.00 3.51
4005 4226 8.772705 GCTTTTCTTTCTCATCATAGATAGTGG 58.227 37.037 0.00 0.00 0.00 4.00
4020 4241 0.037877 AGTGGCTTTCTGCAGATGCT 59.962 50.000 28.98 15.33 45.15 3.79
4143 4364 3.579709 CAGGGACATAGTAGCTATTGCG 58.420 50.000 0.00 0.00 45.42 4.85
4155 4376 1.789464 GCTATTGCGAAGACAGGATCG 59.211 52.381 0.00 0.00 41.81 3.69
4227 4448 2.298729 CCAAAACAATCCAATGTCGGGT 59.701 45.455 0.00 0.00 31.81 5.28
4314 4535 5.255710 AGTTTGGTCGATCATCTAGAGTG 57.744 43.478 0.00 0.00 0.00 3.51
4363 4584 6.798315 ACTCTTCTATATGAATGCACATGC 57.202 37.500 0.00 0.00 42.50 4.06
4413 4634 6.691255 TGACATCTGATCATAATCATGGGA 57.309 37.500 0.00 0.00 41.05 4.37
4414 4635 6.708285 TGACATCTGATCATAATCATGGGAG 58.292 40.000 0.00 0.00 41.05 4.30
4435 4656 5.462398 GGAGTTACATATAAGTGTTGCCTCG 59.538 44.000 0.00 0.00 33.62 4.63
4447 4668 1.792949 GTTGCCTCGTAGGAATATGCG 59.207 52.381 5.24 0.00 37.67 4.73
4480 4963 8.022550 TGTTAAATGCAATGTAGACAGTTGATG 58.977 33.333 0.00 0.00 0.00 3.07
4536 5019 3.084786 CCTTGTCTTGGAATGGTCTTCC 58.915 50.000 0.00 0.00 39.03 3.46
4554 5037 4.473196 TCTTCCATGAACCTGTATGCCTTA 59.527 41.667 0.00 0.00 0.00 2.69
4569 5052 4.972751 TGCCTTATCCTTTTTGCCTTTT 57.027 36.364 0.00 0.00 0.00 2.27
4572 5055 5.046663 TGCCTTATCCTTTTTGCCTTTTAGG 60.047 40.000 0.00 0.00 38.80 2.69
4574 5057 6.628175 GCCTTATCCTTTTTGCCTTTTAGGAG 60.628 42.308 0.00 0.00 37.67 3.69
4583 5066 3.873910 TGCCTTTTAGGAGATGTGCTAC 58.126 45.455 0.00 0.00 37.67 3.58
4732 5215 4.561105 GAGCAGATATTGTGGTAGCTACC 58.439 47.826 32.37 32.37 46.62 3.18
4753 5236 3.071602 CCCCTGGACGACTCAATGATATT 59.928 47.826 0.00 0.00 0.00 1.28
4779 5262 5.163405 TGGAAATGAGGAAGATTAGTCTCCG 60.163 44.000 0.00 0.00 32.15 4.63
4858 5341 3.440173 AGCCACAAATACGGAAGATTGTG 59.560 43.478 14.21 14.21 44.69 3.33
5048 5543 4.416620 CTTTTGTTTGTTTGCCGTACTGA 58.583 39.130 0.00 0.00 0.00 3.41
5050 5545 4.436242 TTGTTTGTTTGCCGTACTGAAA 57.564 36.364 0.00 0.00 0.00 2.69
5123 5618 0.037590 TCACCCCTTGTGTATGGTGC 59.962 55.000 2.69 0.00 46.22 5.01
5185 5680 3.432046 GCTTGGAGCAGATTCTTAGAGCT 60.432 47.826 0.00 0.00 41.89 4.09
5323 5818 5.911178 ACAGGGTGAAAGGGATCATATTCTA 59.089 40.000 0.00 0.00 0.00 2.10
5336 5831 5.531122 TCATATTCTAGGTCAGTTTCGGG 57.469 43.478 0.00 0.00 0.00 5.14
5409 5904 3.341823 ACATCAAAGACATCAGGTGAGC 58.658 45.455 0.00 0.00 0.00 4.26
5475 5970 5.705441 TCGTTTCATTTCAAGCCTAGTGATT 59.295 36.000 0.00 0.00 0.00 2.57
5501 5996 4.022068 TGTTGATTGTTCTGCCATTTCTCC 60.022 41.667 0.00 0.00 0.00 3.71
5504 5999 4.158949 TGATTGTTCTGCCATTTCTCCATG 59.841 41.667 0.00 0.00 0.00 3.66
5777 6272 3.113745 GCATGAGCCGTTGGGATG 58.886 61.111 0.00 0.00 34.06 3.51
5888 6383 0.032813 AGATGGGCCAGGTGGATTTG 60.033 55.000 13.78 0.00 37.39 2.32
5914 6409 2.595754 GATGGCCCGGGCAGATTC 60.596 66.667 44.46 29.37 42.43 2.52
6022 6544 4.701437 ATGGGCCCTGGTCCTGGT 62.701 66.667 25.70 0.00 41.25 4.00
6027 6549 3.260100 CCCTGGTCCTGGTGGCTT 61.260 66.667 13.43 0.00 0.00 4.35
6028 6550 2.845345 CCCTGGTCCTGGTGGCTTT 61.845 63.158 13.43 0.00 0.00 3.51
6029 6551 1.604593 CCTGGTCCTGGTGGCTTTG 60.605 63.158 6.63 0.00 0.00 2.77
6030 6552 1.604593 CTGGTCCTGGTGGCTTTGG 60.605 63.158 0.00 0.00 0.00 3.28
6031 6553 2.357593 CTGGTCCTGGTGGCTTTGGT 62.358 60.000 0.00 0.00 0.00 3.67
6032 6554 1.903404 GGTCCTGGTGGCTTTGGTG 60.903 63.158 0.00 0.00 0.00 4.17
6033 6555 1.903404 GTCCTGGTGGCTTTGGTGG 60.903 63.158 0.00 0.00 0.00 4.61
6034 6556 2.081787 TCCTGGTGGCTTTGGTGGA 61.082 57.895 0.00 0.00 0.00 4.02
6035 6557 1.903404 CCTGGTGGCTTTGGTGGAC 60.903 63.158 0.00 0.00 0.00 4.02
6036 6558 2.203280 TGGTGGCTTTGGTGGACG 60.203 61.111 0.00 0.00 0.00 4.79
6037 6559 2.983592 GGTGGCTTTGGTGGACGG 60.984 66.667 0.00 0.00 0.00 4.79
6038 6560 2.983592 GTGGCTTTGGTGGACGGG 60.984 66.667 0.00 0.00 0.00 5.28
6039 6561 3.172106 TGGCTTTGGTGGACGGGA 61.172 61.111 0.00 0.00 0.00 5.14
6040 6562 2.114411 GGCTTTGGTGGACGGGAA 59.886 61.111 0.00 0.00 0.00 3.97
6041 6563 1.971695 GGCTTTGGTGGACGGGAAG 60.972 63.158 0.00 0.00 0.00 3.46
6042 6564 1.971695 GCTTTGGTGGACGGGAAGG 60.972 63.158 0.00 0.00 0.00 3.46
6043 6565 1.303317 CTTTGGTGGACGGGAAGGG 60.303 63.158 0.00 0.00 0.00 3.95
6044 6566 3.501040 TTTGGTGGACGGGAAGGGC 62.501 63.158 0.00 0.00 0.00 5.19
6092 6614 0.114168 TGGTGGATTTGGTGGAAGGG 59.886 55.000 0.00 0.00 0.00 3.95
6093 6615 0.407918 GGTGGATTTGGTGGAAGGGA 59.592 55.000 0.00 0.00 0.00 4.20
6094 6616 1.616994 GGTGGATTTGGTGGAAGGGAG 60.617 57.143 0.00 0.00 0.00 4.30
6095 6617 0.704076 TGGATTTGGTGGAAGGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
6096 6618 0.033109 GGATTTGGTGGAAGGGAGGG 60.033 60.000 0.00 0.00 0.00 4.30
6097 6619 0.033109 GATTTGGTGGAAGGGAGGGG 60.033 60.000 0.00 0.00 0.00 4.79
6098 6620 2.168272 ATTTGGTGGAAGGGAGGGGC 62.168 60.000 0.00 0.00 0.00 5.80
6101 6623 3.732849 GTGGAAGGGAGGGGCCTG 61.733 72.222 0.84 0.00 36.66 4.85
6104 6626 3.732849 GAAGGGAGGGGCCTGGTG 61.733 72.222 0.84 0.00 36.66 4.17
6108 6630 3.023735 GGAGGGGCCTGGTGGATT 61.024 66.667 0.84 0.00 34.57 3.01
6109 6631 2.626467 GGAGGGGCCTGGTGGATTT 61.626 63.158 0.84 0.00 34.57 2.17
6110 6632 1.380380 GAGGGGCCTGGTGGATTTG 60.380 63.158 0.84 0.00 34.57 2.32
6111 6633 2.364186 GGGGCCTGGTGGATTTGG 60.364 66.667 0.84 0.00 34.57 3.28
6112 6634 2.445155 GGGCCTGGTGGATTTGGT 59.555 61.111 0.84 0.00 34.57 3.67
6113 6635 1.984026 GGGCCTGGTGGATTTGGTG 60.984 63.158 0.84 0.00 34.57 4.17
6114 6636 1.984026 GGCCTGGTGGATTTGGTGG 60.984 63.158 0.00 0.00 34.57 4.61
6115 6637 1.076549 GCCTGGTGGATTTGGTGGA 59.923 57.895 0.00 0.00 34.57 4.02
6116 6638 0.541764 GCCTGGTGGATTTGGTGGAA 60.542 55.000 0.00 0.00 34.57 3.53
6117 6639 1.549203 CCTGGTGGATTTGGTGGAAG 58.451 55.000 0.00 0.00 34.57 3.46
6118 6640 1.549203 CTGGTGGATTTGGTGGAAGG 58.451 55.000 0.00 0.00 0.00 3.46
6347 6869 0.623324 TGGATTTGGAGGACGGGGAT 60.623 55.000 0.00 0.00 0.00 3.85
6436 6958 3.060866 GACAAGGGTCGAGGCAGT 58.939 61.111 0.00 0.00 33.68 4.40
6553 7075 3.231889 CTGGTCACGCAGCAGGAGT 62.232 63.158 6.32 0.00 45.53 3.85
6571 7093 3.114616 CGCAGCAGGAGTTGGTCG 61.115 66.667 0.00 0.00 34.69 4.79
6637 7159 1.911269 TCCAGTAGAACGCAGGCCA 60.911 57.895 5.01 0.00 0.00 5.36
7041 7563 8.443937 GTTCTGTCCATTATGTACTCTTTTCAC 58.556 37.037 0.00 0.00 0.00 3.18
7297 7820 9.567776 TGTTCTTTCTACATGGAAGACAATAAA 57.432 29.630 0.00 0.00 0.00 1.40
7390 7913 1.825474 TGAAGTAGCTCAGGTACAGGC 59.175 52.381 16.30 5.49 38.76 4.85
7496 8020 7.416022 ACTGTATAACATTAGTCGACTGTAGC 58.584 38.462 28.12 9.57 0.00 3.58
7497 8021 7.066645 ACTGTATAACATTAGTCGACTGTAGCA 59.933 37.037 28.12 4.38 0.00 3.49
7498 8022 7.764331 TGTATAACATTAGTCGACTGTAGCAA 58.236 34.615 28.12 14.04 0.00 3.91
7499 8023 7.699391 TGTATAACATTAGTCGACTGTAGCAAC 59.301 37.037 28.12 15.37 0.00 4.17
7500 8024 3.499048 ACATTAGTCGACTGTAGCAACG 58.501 45.455 28.12 8.89 0.00 4.10
7501 8025 3.189910 ACATTAGTCGACTGTAGCAACGA 59.810 43.478 28.12 1.06 0.00 3.85
7502 8026 3.466712 TTAGTCGACTGTAGCAACGAG 57.533 47.619 28.12 0.00 35.52 4.18
7505 8029 2.292569 AGTCGACTGTAGCAACGAGAAA 59.707 45.455 19.30 0.00 35.52 2.52
7509 8033 3.609644 CGACTGTAGCAACGAGAAAGAGT 60.610 47.826 0.00 0.00 0.00 3.24
7525 8049 6.693466 AGAAAGAGTAAGAGTAAGAGTTGGC 58.307 40.000 0.00 0.00 0.00 4.52
7620 8150 2.413310 ACGAAAAGAGTTGGGTGTGT 57.587 45.000 0.00 0.00 0.00 3.72
7747 8277 3.217231 CGGGATAAGACGCAGGGT 58.783 61.111 0.00 0.00 0.00 4.34
7748 8278 1.227263 CGGGATAAGACGCAGGGTG 60.227 63.158 0.00 0.00 0.00 4.61
7749 8279 1.146263 GGGATAAGACGCAGGGTGG 59.854 63.158 0.00 0.00 0.00 4.61
7750 8280 1.523938 GGATAAGACGCAGGGTGGC 60.524 63.158 0.00 0.00 0.00 5.01
7771 8301 1.373497 GGCGCCTATGATCCGTGAG 60.373 63.158 22.15 0.00 0.00 3.51
7773 8303 0.387878 GCGCCTATGATCCGTGAGAG 60.388 60.000 0.00 0.00 0.00 3.20
7820 8351 5.806654 AATTACAAAGGTTGCCAATCTGT 57.193 34.783 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.062971 TGGGGTACGTCTACATCTCC 57.937 55.000 0.00 0.00 0.00 3.71
4 5 3.107642 CCATTGGGGTACGTCTACATC 57.892 52.381 0.00 0.00 0.00 3.06
18 19 2.491152 GACATGTGCGCCCATTGG 59.509 61.111 1.15 0.00 0.00 3.16
19 20 2.100797 CGACATGTGCGCCCATTG 59.899 61.111 1.15 1.77 0.00 2.82
26 27 0.726827 AACCATTAGCGACATGTGCG 59.273 50.000 1.15 8.23 37.44 5.34
27 28 1.737236 TCAACCATTAGCGACATGTGC 59.263 47.619 1.15 7.67 0.00 4.57
28 29 4.621068 ATTCAACCATTAGCGACATGTG 57.379 40.909 1.15 0.00 0.00 3.21
29 30 5.643379 AAATTCAACCATTAGCGACATGT 57.357 34.783 0.00 0.00 0.00 3.21
30 31 8.533965 CAATAAAATTCAACCATTAGCGACATG 58.466 33.333 0.00 0.00 0.00 3.21
31 32 8.250332 ACAATAAAATTCAACCATTAGCGACAT 58.750 29.630 0.00 0.00 0.00 3.06
32 33 7.598278 ACAATAAAATTCAACCATTAGCGACA 58.402 30.769 0.00 0.00 0.00 4.35
33 34 7.968405 AGACAATAAAATTCAACCATTAGCGAC 59.032 33.333 0.00 0.00 0.00 5.19
34 35 7.967854 CAGACAATAAAATTCAACCATTAGCGA 59.032 33.333 0.00 0.00 0.00 4.93
35 36 7.220683 CCAGACAATAAAATTCAACCATTAGCG 59.779 37.037 0.00 0.00 0.00 4.26
36 37 7.492344 CCCAGACAATAAAATTCAACCATTAGC 59.508 37.037 0.00 0.00 0.00 3.09
37 38 8.748412 TCCCAGACAATAAAATTCAACCATTAG 58.252 33.333 0.00 0.00 0.00 1.73
38 39 8.657387 TCCCAGACAATAAAATTCAACCATTA 57.343 30.769 0.00 0.00 0.00 1.90
39 40 7.235399 ACTCCCAGACAATAAAATTCAACCATT 59.765 33.333 0.00 0.00 0.00 3.16
40 41 6.725834 ACTCCCAGACAATAAAATTCAACCAT 59.274 34.615 0.00 0.00 0.00 3.55
41 42 6.074648 ACTCCCAGACAATAAAATTCAACCA 58.925 36.000 0.00 0.00 0.00 3.67
42 43 6.590234 ACTCCCAGACAATAAAATTCAACC 57.410 37.500 0.00 0.00 0.00 3.77
43 44 9.788960 GATTACTCCCAGACAATAAAATTCAAC 57.211 33.333 0.00 0.00 0.00 3.18
44 45 9.527157 TGATTACTCCCAGACAATAAAATTCAA 57.473 29.630 0.00 0.00 0.00 2.69
45 46 9.699410 ATGATTACTCCCAGACAATAAAATTCA 57.301 29.630 0.00 0.00 0.00 2.57
46 47 9.956720 CATGATTACTCCCAGACAATAAAATTC 57.043 33.333 0.00 0.00 0.00 2.17
47 48 8.917088 CCATGATTACTCCCAGACAATAAAATT 58.083 33.333 0.00 0.00 0.00 1.82
48 49 8.061304 ACCATGATTACTCCCAGACAATAAAAT 58.939 33.333 0.00 0.00 0.00 1.82
49 50 7.410174 ACCATGATTACTCCCAGACAATAAAA 58.590 34.615 0.00 0.00 0.00 1.52
50 51 6.969043 ACCATGATTACTCCCAGACAATAAA 58.031 36.000 0.00 0.00 0.00 1.40
51 52 6.157820 TGACCATGATTACTCCCAGACAATAA 59.842 38.462 0.00 0.00 0.00 1.40
52 53 5.665360 TGACCATGATTACTCCCAGACAATA 59.335 40.000 0.00 0.00 0.00 1.90
53 54 4.474651 TGACCATGATTACTCCCAGACAAT 59.525 41.667 0.00 0.00 0.00 2.71
54 55 3.843619 TGACCATGATTACTCCCAGACAA 59.156 43.478 0.00 0.00 0.00 3.18
55 56 3.449918 TGACCATGATTACTCCCAGACA 58.550 45.455 0.00 0.00 0.00 3.41
56 57 4.101585 TGATGACCATGATTACTCCCAGAC 59.898 45.833 0.00 0.00 0.00 3.51
57 58 4.297768 TGATGACCATGATTACTCCCAGA 58.702 43.478 0.00 0.00 0.00 3.86
58 59 4.102210 ACTGATGACCATGATTACTCCCAG 59.898 45.833 0.00 0.00 0.00 4.45
59 60 4.040047 ACTGATGACCATGATTACTCCCA 58.960 43.478 0.00 0.00 0.00 4.37
60 61 4.696479 ACTGATGACCATGATTACTCCC 57.304 45.455 0.00 0.00 0.00 4.30
61 62 7.445121 TCATAACTGATGACCATGATTACTCC 58.555 38.462 0.00 0.00 39.78 3.85
62 63 8.893219 TTCATAACTGATGACCATGATTACTC 57.107 34.615 0.00 0.00 44.53 2.59
63 64 9.334947 CTTTCATAACTGATGACCATGATTACT 57.665 33.333 0.00 0.00 44.53 2.24
64 65 8.562892 CCTTTCATAACTGATGACCATGATTAC 58.437 37.037 0.00 0.00 44.53 1.89
65 66 7.720957 CCCTTTCATAACTGATGACCATGATTA 59.279 37.037 0.00 0.00 44.53 1.75
66 67 6.548622 CCCTTTCATAACTGATGACCATGATT 59.451 38.462 0.00 0.00 44.53 2.57
67 68 6.066690 CCCTTTCATAACTGATGACCATGAT 58.933 40.000 0.00 0.00 44.53 2.45
68 69 5.439721 CCCTTTCATAACTGATGACCATGA 58.560 41.667 0.00 0.00 44.53 3.07
69 70 4.581824 CCCCTTTCATAACTGATGACCATG 59.418 45.833 0.00 0.00 44.53 3.66
70 71 4.478317 TCCCCTTTCATAACTGATGACCAT 59.522 41.667 0.00 0.00 44.53 3.55
71 72 3.849574 TCCCCTTTCATAACTGATGACCA 59.150 43.478 0.00 0.00 44.53 4.02
72 73 4.503714 TCCCCTTTCATAACTGATGACC 57.496 45.455 0.00 0.00 44.53 4.02
73 74 6.094186 GTCTTTCCCCTTTCATAACTGATGAC 59.906 42.308 0.00 0.00 44.53 3.06
74 75 6.180472 GTCTTTCCCCTTTCATAACTGATGA 58.820 40.000 0.00 0.00 43.11 2.92
75 76 5.065218 CGTCTTTCCCCTTTCATAACTGATG 59.935 44.000 0.00 0.00 36.82 3.07
76 77 5.045869 TCGTCTTTCCCCTTTCATAACTGAT 60.046 40.000 0.00 0.00 0.00 2.90
77 78 4.285003 TCGTCTTTCCCCTTTCATAACTGA 59.715 41.667 0.00 0.00 0.00 3.41
78 79 4.575885 TCGTCTTTCCCCTTTCATAACTG 58.424 43.478 0.00 0.00 0.00 3.16
79 80 4.903045 TCGTCTTTCCCCTTTCATAACT 57.097 40.909 0.00 0.00 0.00 2.24
80 81 4.142665 GCTTCGTCTTTCCCCTTTCATAAC 60.143 45.833 0.00 0.00 0.00 1.89
81 82 4.007659 GCTTCGTCTTTCCCCTTTCATAA 58.992 43.478 0.00 0.00 0.00 1.90
82 83 3.008594 TGCTTCGTCTTTCCCCTTTCATA 59.991 43.478 0.00 0.00 0.00 2.15
83 84 2.224769 TGCTTCGTCTTTCCCCTTTCAT 60.225 45.455 0.00 0.00 0.00 2.57
84 85 1.142060 TGCTTCGTCTTTCCCCTTTCA 59.858 47.619 0.00 0.00 0.00 2.69
85 86 1.807142 CTGCTTCGTCTTTCCCCTTTC 59.193 52.381 0.00 0.00 0.00 2.62
86 87 1.143073 ACTGCTTCGTCTTTCCCCTTT 59.857 47.619 0.00 0.00 0.00 3.11
87 88 0.765510 ACTGCTTCGTCTTTCCCCTT 59.234 50.000 0.00 0.00 0.00 3.95
88 89 0.321996 GACTGCTTCGTCTTTCCCCT 59.678 55.000 0.00 0.00 0.00 4.79
89 90 0.034896 TGACTGCTTCGTCTTTCCCC 59.965 55.000 0.00 0.00 35.00 4.81
90 91 1.433534 CTGACTGCTTCGTCTTTCCC 58.566 55.000 0.00 0.00 35.00 3.97
91 92 0.793250 GCTGACTGCTTCGTCTTTCC 59.207 55.000 0.00 0.00 38.95 3.13
102 103 1.073897 ACCAAAGGGAGCTGACTGC 59.926 57.895 0.00 0.00 38.86 4.40
103 104 0.607489 CCACCAAAGGGAGCTGACTG 60.607 60.000 0.00 0.00 38.05 3.51
104 105 1.763770 CCACCAAAGGGAGCTGACT 59.236 57.895 0.00 0.00 38.05 3.41
105 106 1.973812 GCCACCAAAGGGAGCTGAC 60.974 63.158 0.00 0.00 38.05 3.51
106 107 2.436109 GCCACCAAAGGGAGCTGA 59.564 61.111 0.00 0.00 38.05 4.26
107 108 2.677875 GGCCACCAAAGGGAGCTG 60.678 66.667 0.00 0.00 37.23 4.24
108 109 3.185203 TGGCCACCAAAGGGAGCT 61.185 61.111 0.00 0.00 37.23 4.09
109 110 2.677875 CTGGCCACCAAAGGGAGC 60.678 66.667 0.00 0.00 38.05 4.70
110 111 2.036256 CCTGGCCACCAAAGGGAG 59.964 66.667 0.00 0.00 38.05 4.30
111 112 3.589542 CCCTGGCCACCAAAGGGA 61.590 66.667 20.15 0.00 40.32 4.20
112 113 3.159104 TTCCCTGGCCACCAAAGGG 62.159 63.158 19.01 19.01 39.54 3.95
113 114 1.607467 CTTCCCTGGCCACCAAAGG 60.607 63.158 0.00 0.00 30.80 3.11
114 115 1.607467 CCTTCCCTGGCCACCAAAG 60.607 63.158 0.00 5.25 30.80 2.77
115 116 2.525592 CCTTCCCTGGCCACCAAA 59.474 61.111 0.00 0.00 30.80 3.28
116 117 4.299796 GCCTTCCCTGGCCACCAA 62.300 66.667 0.00 0.00 46.82 3.67
133 134 6.251376 GCAATTTAAATTCCTTCTGTGCGTAG 59.749 38.462 10.53 0.00 0.00 3.51
134 135 6.090129 GCAATTTAAATTCCTTCTGTGCGTA 58.910 36.000 10.53 0.00 0.00 4.42
135 136 4.923281 GCAATTTAAATTCCTTCTGTGCGT 59.077 37.500 10.53 0.00 0.00 5.24
136 137 4.922692 TGCAATTTAAATTCCTTCTGTGCG 59.077 37.500 10.53 0.00 0.00 5.34
137 138 6.973229 ATGCAATTTAAATTCCTTCTGTGC 57.027 33.333 10.53 9.82 0.00 4.57
154 155 9.657419 CTGTATTTTCTTCCCTTTTTATGCAAT 57.343 29.630 0.00 0.00 0.00 3.56
155 156 8.865090 TCTGTATTTTCTTCCCTTTTTATGCAA 58.135 29.630 0.00 0.00 0.00 4.08
156 157 8.303876 GTCTGTATTTTCTTCCCTTTTTATGCA 58.696 33.333 0.00 0.00 0.00 3.96
157 158 7.484959 CGTCTGTATTTTCTTCCCTTTTTATGC 59.515 37.037 0.00 0.00 0.00 3.14
158 159 8.512138 ACGTCTGTATTTTCTTCCCTTTTTATG 58.488 33.333 0.00 0.00 0.00 1.90
159 160 8.512138 CACGTCTGTATTTTCTTCCCTTTTTAT 58.488 33.333 0.00 0.00 0.00 1.40
160 161 7.040961 CCACGTCTGTATTTTCTTCCCTTTTTA 60.041 37.037 0.00 0.00 0.00 1.52
161 162 6.238925 CCACGTCTGTATTTTCTTCCCTTTTT 60.239 38.462 0.00 0.00 0.00 1.94
162 163 5.240844 CCACGTCTGTATTTTCTTCCCTTTT 59.759 40.000 0.00 0.00 0.00 2.27
163 164 4.760204 CCACGTCTGTATTTTCTTCCCTTT 59.240 41.667 0.00 0.00 0.00 3.11
164 165 4.324267 CCACGTCTGTATTTTCTTCCCTT 58.676 43.478 0.00 0.00 0.00 3.95
165 166 3.868754 GCCACGTCTGTATTTTCTTCCCT 60.869 47.826 0.00 0.00 0.00 4.20
166 167 2.418976 GCCACGTCTGTATTTTCTTCCC 59.581 50.000 0.00 0.00 0.00 3.97
167 168 3.071479 TGCCACGTCTGTATTTTCTTCC 58.929 45.455 0.00 0.00 0.00 3.46
168 169 4.391830 TGATGCCACGTCTGTATTTTCTTC 59.608 41.667 0.00 0.00 0.00 2.87
169 170 4.323417 TGATGCCACGTCTGTATTTTCTT 58.677 39.130 0.00 0.00 0.00 2.52
170 171 3.937814 TGATGCCACGTCTGTATTTTCT 58.062 40.909 0.00 0.00 0.00 2.52
171 172 4.591202 CATGATGCCACGTCTGTATTTTC 58.409 43.478 0.00 0.00 0.00 2.29
172 173 3.181497 GCATGATGCCACGTCTGTATTTT 60.181 43.478 6.04 0.00 37.42 1.82
173 174 2.355756 GCATGATGCCACGTCTGTATTT 59.644 45.455 6.04 0.00 37.42 1.40
174 175 1.942657 GCATGATGCCACGTCTGTATT 59.057 47.619 6.04 0.00 37.42 1.89
175 176 1.134431 TGCATGATGCCACGTCTGTAT 60.134 47.619 15.70 0.00 44.23 2.29
176 177 0.248843 TGCATGATGCCACGTCTGTA 59.751 50.000 15.70 0.00 44.23 2.74
177 178 0.606130 TTGCATGATGCCACGTCTGT 60.606 50.000 15.70 0.00 44.23 3.41
178 179 0.098200 CTTGCATGATGCCACGTCTG 59.902 55.000 15.70 0.00 44.23 3.51
179 180 0.036105 TCTTGCATGATGCCACGTCT 60.036 50.000 15.70 0.00 44.23 4.18
180 181 0.097674 GTCTTGCATGATGCCACGTC 59.902 55.000 15.70 0.00 44.23 4.34
181 182 0.606130 TGTCTTGCATGATGCCACGT 60.606 50.000 15.70 0.00 44.23 4.49
182 183 0.522626 TTGTCTTGCATGATGCCACG 59.477 50.000 15.70 3.21 44.23 4.94
183 184 2.728690 TTTGTCTTGCATGATGCCAC 57.271 45.000 15.70 9.40 44.23 5.01
184 185 2.629137 ACTTTTGTCTTGCATGATGCCA 59.371 40.909 15.70 2.46 44.23 4.92
185 186 3.308438 ACTTTTGTCTTGCATGATGCC 57.692 42.857 15.70 0.00 44.23 4.40
186 187 4.053295 ACAACTTTTGTCTTGCATGATGC 58.947 39.130 11.12 11.12 40.56 3.91
187 188 5.749588 TCAACAACTTTTGTCTTGCATGATG 59.250 36.000 5.49 1.03 44.59 3.07
188 189 5.904941 TCAACAACTTTTGTCTTGCATGAT 58.095 33.333 5.49 0.00 44.59 2.45
189 190 5.321959 TCAACAACTTTTGTCTTGCATGA 57.678 34.783 0.00 0.00 44.59 3.07
190 191 5.521010 ACATCAACAACTTTTGTCTTGCATG 59.479 36.000 0.00 0.00 44.59 4.06
191 192 5.521010 CACATCAACAACTTTTGTCTTGCAT 59.479 36.000 0.00 0.00 44.59 3.96
192 193 4.863689 CACATCAACAACTTTTGTCTTGCA 59.136 37.500 0.00 0.00 44.59 4.08
193 194 4.268405 CCACATCAACAACTTTTGTCTTGC 59.732 41.667 0.00 0.00 44.59 4.01
194 195 4.268405 GCCACATCAACAACTTTTGTCTTG 59.732 41.667 0.00 0.00 44.59 3.02
195 196 4.432712 GCCACATCAACAACTTTTGTCTT 58.567 39.130 0.00 0.00 44.59 3.01
196 197 3.181476 GGCCACATCAACAACTTTTGTCT 60.181 43.478 0.00 0.00 44.59 3.41
197 198 3.123050 GGCCACATCAACAACTTTTGTC 58.877 45.455 0.00 0.00 44.59 3.18
199 200 3.457610 AGGCCACATCAACAACTTTTG 57.542 42.857 5.01 0.00 0.00 2.44
200 201 4.037923 CAGTAGGCCACATCAACAACTTTT 59.962 41.667 5.01 0.00 0.00 2.27
201 202 3.569701 CAGTAGGCCACATCAACAACTTT 59.430 43.478 5.01 0.00 0.00 2.66
202 203 3.149196 CAGTAGGCCACATCAACAACTT 58.851 45.455 5.01 0.00 0.00 2.66
203 204 2.783135 CAGTAGGCCACATCAACAACT 58.217 47.619 5.01 0.00 0.00 3.16
204 205 1.200020 GCAGTAGGCCACATCAACAAC 59.800 52.381 5.01 0.00 36.11 3.32
205 206 1.073763 AGCAGTAGGCCACATCAACAA 59.926 47.619 5.01 0.00 46.50 2.83
206 207 0.692476 AGCAGTAGGCCACATCAACA 59.308 50.000 5.01 0.00 46.50 3.33
207 208 1.339055 TGAGCAGTAGGCCACATCAAC 60.339 52.381 5.01 0.00 46.50 3.18
208 209 0.983467 TGAGCAGTAGGCCACATCAA 59.017 50.000 5.01 0.00 46.50 2.57
209 210 0.538584 CTGAGCAGTAGGCCACATCA 59.461 55.000 5.01 6.62 46.50 3.07
210 211 0.539051 ACTGAGCAGTAGGCCACATC 59.461 55.000 5.01 2.35 46.50 3.06
211 212 0.987294 AACTGAGCAGTAGGCCACAT 59.013 50.000 5.01 0.00 46.50 3.21
212 213 0.035317 CAACTGAGCAGTAGGCCACA 59.965 55.000 5.01 0.00 46.50 4.17
213 214 0.321671 TCAACTGAGCAGTAGGCCAC 59.678 55.000 5.01 0.54 46.50 5.01
214 215 1.055849 TTCAACTGAGCAGTAGGCCA 58.944 50.000 5.01 0.00 46.50 5.36
215 216 2.409948 ATTCAACTGAGCAGTAGGCC 57.590 50.000 3.21 0.00 46.50 5.19
216 217 4.508662 AGTTATTCAACTGAGCAGTAGGC 58.491 43.478 3.21 0.00 43.50 3.93
217 218 5.163814 GCAAGTTATTCAACTGAGCAGTAGG 60.164 44.000 3.21 0.12 44.41 3.18
218 219 5.409520 TGCAAGTTATTCAACTGAGCAGTAG 59.590 40.000 3.21 0.00 44.78 2.57
219 220 5.304778 TGCAAGTTATTCAACTGAGCAGTA 58.695 37.500 3.21 0.00 44.78 2.74
220 221 4.136796 TGCAAGTTATTCAACTGAGCAGT 58.863 39.130 11.54 0.00 44.78 4.40
221 222 4.754372 TGCAAGTTATTCAACTGAGCAG 57.246 40.909 11.54 0.00 44.78 4.24
223 224 5.051891 ACATGCAAGTTATTCAACTGAGC 57.948 39.130 0.00 7.76 44.41 4.26
224 225 8.506437 TCTTAACATGCAAGTTATTCAACTGAG 58.494 33.333 14.71 7.31 44.41 3.35
225 226 8.389779 TCTTAACATGCAAGTTATTCAACTGA 57.610 30.769 14.71 0.00 44.41 3.41
226 227 8.506437 TCTCTTAACATGCAAGTTATTCAACTG 58.494 33.333 14.71 0.00 44.41 3.16
228 229 9.677567 TTTCTCTTAACATGCAAGTTATTCAAC 57.322 29.630 14.71 0.00 34.25 3.18
234 235 9.515226 ACCTTATTTCTCTTAACATGCAAGTTA 57.485 29.630 10.34 10.34 33.07 2.24
235 236 8.409358 ACCTTATTTCTCTTAACATGCAAGTT 57.591 30.769 12.50 12.50 35.55 2.66
236 237 9.167311 CTACCTTATTTCTCTTAACATGCAAGT 57.833 33.333 0.00 0.00 0.00 3.16
237 238 9.167311 ACTACCTTATTTCTCTTAACATGCAAG 57.833 33.333 0.00 0.00 0.00 4.01
239 240 9.817809 CTACTACCTTATTTCTCTTAACATGCA 57.182 33.333 0.00 0.00 0.00 3.96
240 241 9.262358 CCTACTACCTTATTTCTCTTAACATGC 57.738 37.037 0.00 0.00 0.00 4.06
241 242 9.765795 CCCTACTACCTTATTTCTCTTAACATG 57.234 37.037 0.00 0.00 0.00 3.21
242 243 9.725206 TCCCTACTACCTTATTTCTCTTAACAT 57.275 33.333 0.00 0.00 0.00 2.71
243 244 9.725206 ATCCCTACTACCTTATTTCTCTTAACA 57.275 33.333 0.00 0.00 0.00 2.41
244 245 9.984190 CATCCCTACTACCTTATTTCTCTTAAC 57.016 37.037 0.00 0.00 0.00 2.01
245 246 9.947189 TCATCCCTACTACCTTATTTCTCTTAA 57.053 33.333 0.00 0.00 0.00 1.85
246 247 9.947189 TTCATCCCTACTACCTTATTTCTCTTA 57.053 33.333 0.00 0.00 0.00 2.10
247 248 8.706521 GTTCATCCCTACTACCTTATTTCTCTT 58.293 37.037 0.00 0.00 0.00 2.85
248 249 8.068733 AGTTCATCCCTACTACCTTATTTCTCT 58.931 37.037 0.00 0.00 0.00 3.10
249 250 8.252624 AGTTCATCCCTACTACCTTATTTCTC 57.747 38.462 0.00 0.00 0.00 2.87
250 251 9.900112 ATAGTTCATCCCTACTACCTTATTTCT 57.100 33.333 0.00 0.00 30.24 2.52
255 256 9.597681 CCTAAATAGTTCATCCCTACTACCTTA 57.402 37.037 0.00 0.00 30.24 2.69
256 257 8.072480 ACCTAAATAGTTCATCCCTACTACCTT 58.928 37.037 0.00 0.00 30.24 3.50
257 258 7.602868 ACCTAAATAGTTCATCCCTACTACCT 58.397 38.462 0.00 0.00 30.24 3.08
258 259 7.852550 ACCTAAATAGTTCATCCCTACTACC 57.147 40.000 0.00 0.00 30.24 3.18
279 280 9.035890 TCCATTCGACATGAATCTATAATACCT 57.964 33.333 0.00 0.00 45.59 3.08
280 281 9.653287 TTCCATTCGACATGAATCTATAATACC 57.347 33.333 0.00 0.00 45.59 2.73
317 318 5.419155 GGAAAGGAATCTCGGGAAAGAATTT 59.581 40.000 0.00 0.00 43.98 1.82
318 319 4.950475 GGAAAGGAATCTCGGGAAAGAATT 59.050 41.667 0.00 0.00 0.00 2.17
323 324 1.903860 TCGGAAAGGAATCTCGGGAAA 59.096 47.619 0.00 0.00 0.00 3.13
364 365 3.050089 TGTACCACCCCTCAGAAAAAGA 58.950 45.455 0.00 0.00 0.00 2.52
365 366 3.502123 TGTACCACCCCTCAGAAAAAG 57.498 47.619 0.00 0.00 0.00 2.27
366 367 3.558033 GTTGTACCACCCCTCAGAAAAA 58.442 45.455 0.00 0.00 0.00 1.94
367 368 2.485835 CGTTGTACCACCCCTCAGAAAA 60.486 50.000 0.00 0.00 0.00 2.29
816 831 3.224324 GGGAGCCGCGATGAGGTA 61.224 66.667 8.23 0.00 0.00 3.08
924 939 3.384789 GGGATTAAACAGCCAGGAAATCC 59.615 47.826 8.50 8.50 40.97 3.01
952 967 1.338105 GCCCAGAATTTTGCCAAGGTC 60.338 52.381 0.00 0.00 0.00 3.85
1125 1140 3.929610 GCTTGTCATACTGAGTGAGGTTC 59.070 47.826 0.00 0.00 0.00 3.62
1235 1304 3.949980 TCTGCTGCTGCTGTGGCT 61.950 61.111 17.00 0.00 40.48 4.75
1236 1305 3.735029 GTCTGCTGCTGCTGTGGC 61.735 66.667 17.00 5.06 40.48 5.01
1248 1332 4.030452 GGTTGCTGTGCCGTCTGC 62.030 66.667 0.00 0.00 41.77 4.26
1301 1385 2.079158 GCTGCTGATACTGAAACTGCA 58.921 47.619 0.00 0.00 37.09 4.41
1304 1388 2.289882 TGCTGCTGCTGATACTGAAACT 60.290 45.455 17.00 0.00 40.48 2.66
1330 1432 1.081376 GTTCTTGCTGCTGCTGCTG 60.081 57.895 27.67 20.66 40.48 4.41
1332 1434 1.081376 CTGTTCTTGCTGCTGCTGC 60.081 57.895 22.51 22.51 40.48 5.25
1335 1437 0.456312 GCATCTGTTCTTGCTGCTGC 60.456 55.000 8.89 8.89 35.95 5.25
1365 1503 0.321653 CTAGTGGCTGTTGTGACCCC 60.322 60.000 0.00 0.00 0.00 4.95
1484 1622 1.408702 ACTGAGTTTGCGGCATTTGTT 59.591 42.857 2.28 0.00 0.00 2.83
1515 1653 1.153107 CGGGATTGGCATCTGCTGA 60.153 57.895 1.70 0.00 41.70 4.26
1753 1891 0.675633 AAGCCTGGTGATTGTTGTGC 59.324 50.000 0.00 0.00 0.00 4.57
1800 1938 0.039708 GAGGCTGTGAAGCTTGCAAC 60.040 55.000 2.10 0.00 34.73 4.17
1941 2079 0.392193 CTCCTGCATCAACCTTCGCT 60.392 55.000 0.00 0.00 0.00 4.93
1943 2081 0.392193 AGCTCCTGCATCAACCTTCG 60.392 55.000 0.00 0.00 42.74 3.79
1967 2105 1.163554 GCCAGTCTGCTTTCCTTCAG 58.836 55.000 0.00 0.00 0.00 3.02
2049 2187 2.094182 GGCTTCAGGACGTTGATGACTA 60.094 50.000 7.18 0.00 29.93 2.59
2080 2218 5.238583 CCCTCCGACTCCATGAATATTTAC 58.761 45.833 0.00 0.00 0.00 2.01
2133 2271 0.546122 TTTCACCTGGGGATGATCCG 59.454 55.000 0.00 0.00 37.43 4.18
2178 2316 2.233271 CCTTGATGTGTTTGAGCAGGT 58.767 47.619 0.00 0.00 0.00 4.00
2214 2352 0.397187 TAGCCAGTTGTTGCCGGTAA 59.603 50.000 0.00 0.00 0.00 2.85
2286 2424 3.691609 CACTATTGCCTCTCTTGAAACCC 59.308 47.826 0.00 0.00 0.00 4.11
2298 2436 7.707624 TTCAAATTGATCTTCACTATTGCCT 57.292 32.000 0.00 0.00 0.00 4.75
2387 2525 1.376466 GAGGGTGGAAGAGCAGCAA 59.624 57.895 0.00 0.00 0.00 3.91
2391 2529 0.843309 TTTGTGAGGGTGGAAGAGCA 59.157 50.000 0.00 0.00 0.00 4.26
2412 2550 5.605488 AGGGTTGTAGTATATTACCAGGTGG 59.395 44.000 0.76 0.00 42.17 4.61
2432 2570 7.847848 TCTCATTAACACCTAACCTAATAGGGT 59.152 37.037 11.52 6.69 45.69 4.34
2433 2571 8.258850 TCTCATTAACACCTAACCTAATAGGG 57.741 38.462 11.52 0.00 45.69 3.53
2434 2572 9.930693 GATCTCATTAACACCTAACCTAATAGG 57.069 37.037 4.46 4.46 46.62 2.57
2437 2575 7.934120 GCTGATCTCATTAACACCTAACCTAAT 59.066 37.037 0.00 0.00 0.00 1.73
2439 2577 6.382859 TGCTGATCTCATTAACACCTAACCTA 59.617 38.462 0.00 0.00 0.00 3.08
2440 2578 5.189736 TGCTGATCTCATTAACACCTAACCT 59.810 40.000 0.00 0.00 0.00 3.50
2441 2579 5.428253 TGCTGATCTCATTAACACCTAACC 58.572 41.667 0.00 0.00 0.00 2.85
2442 2580 7.254932 GGAATGCTGATCTCATTAACACCTAAC 60.255 40.741 11.82 0.70 34.59 2.34
2444 2582 6.100279 AGGAATGCTGATCTCATTAACACCTA 59.900 38.462 11.82 0.00 34.59 3.08
2489 2629 6.038050 CCACAAATGTAAAATGTTTTGGCAGT 59.962 34.615 1.16 0.00 34.23 4.40
2502 2642 7.771361 TGTACTCTTTCTGTCCACAAATGTAAA 59.229 33.333 0.00 0.00 0.00 2.01
2634 2777 8.936864 AGTATACAGAAGAAAATACACAGTTGC 58.063 33.333 5.50 0.00 0.00 4.17
2732 2875 7.843490 TTATGAACAATAGAGTTAGTGGTGC 57.157 36.000 0.00 0.00 0.00 5.01
2749 2892 4.439057 TCCCGCTGTACAAGATTATGAAC 58.561 43.478 0.00 0.00 0.00 3.18
2768 2911 1.075601 TGGGCCATTCCTCATATCCC 58.924 55.000 0.00 0.00 34.39 3.85
2814 2957 2.578480 TGGAGGTGCCATGTTATAACCA 59.422 45.455 13.01 0.94 43.33 3.67
2943 3086 3.258971 TGGTGTTGACGATATGCATCA 57.741 42.857 0.19 0.00 0.00 3.07
3076 3219 2.441750 AGTTCAGAAGGTAACAGGGCAA 59.558 45.455 0.00 0.00 41.41 4.52
3079 3222 5.805728 ACAATAGTTCAGAAGGTAACAGGG 58.194 41.667 0.00 0.00 41.41 4.45
3086 3229 4.750098 CGTGTCAACAATAGTTCAGAAGGT 59.250 41.667 0.00 0.00 35.28 3.50
3100 3243 3.846744 GCGTTTGAAATAGCGTGTCAACA 60.847 43.478 0.00 0.00 31.21 3.33
3115 3258 7.866729 TGAAATATCTGTTAAGTTGCGTTTGA 58.133 30.769 0.00 0.00 0.00 2.69
3138 3281 5.188163 TCCTACAATCGGGTCAAATTACTGA 59.812 40.000 0.00 0.00 0.00 3.41
3224 3367 9.521841 TGTTTCCAGTATTATTTGGTGTGATTA 57.478 29.630 0.00 0.00 35.89 1.75
3225 3368 8.415950 TGTTTCCAGTATTATTTGGTGTGATT 57.584 30.769 0.00 0.00 35.89 2.57
3226 3369 7.888021 TCTGTTTCCAGTATTATTTGGTGTGAT 59.112 33.333 0.00 0.00 39.82 3.06
3227 3370 7.227873 TCTGTTTCCAGTATTATTTGGTGTGA 58.772 34.615 0.00 0.00 39.82 3.58
3228 3371 7.447374 TCTGTTTCCAGTATTATTTGGTGTG 57.553 36.000 0.00 0.00 39.82 3.82
3229 3372 9.396022 CTATCTGTTTCCAGTATTATTTGGTGT 57.604 33.333 0.00 0.00 39.82 4.16
3338 3481 1.872952 GCCAAACAAACAAGGCATTCC 59.127 47.619 0.00 0.00 46.26 3.01
3364 3507 5.241403 TGAAGCTCCCTTGTTTGAATAGA 57.759 39.130 0.00 0.00 0.00 1.98
3365 3508 5.964958 TTGAAGCTCCCTTGTTTGAATAG 57.035 39.130 0.00 0.00 0.00 1.73
3366 3509 6.071391 GGATTTGAAGCTCCCTTGTTTGAATA 60.071 38.462 0.00 0.00 0.00 1.75
3367 3510 5.279657 GGATTTGAAGCTCCCTTGTTTGAAT 60.280 40.000 0.00 0.00 0.00 2.57
3368 3511 4.039124 GGATTTGAAGCTCCCTTGTTTGAA 59.961 41.667 0.00 0.00 0.00 2.69
3369 3512 3.573967 GGATTTGAAGCTCCCTTGTTTGA 59.426 43.478 0.00 0.00 0.00 2.69
3370 3513 3.575687 AGGATTTGAAGCTCCCTTGTTTG 59.424 43.478 0.00 0.00 31.49 2.93
3371 3514 3.849527 AGGATTTGAAGCTCCCTTGTTT 58.150 40.909 0.00 0.00 31.49 2.83
3373 3516 3.160269 CAAGGATTTGAAGCTCCCTTGT 58.840 45.455 0.00 0.00 45.25 3.16
3374 3517 3.863142 CAAGGATTTGAAGCTCCCTTG 57.137 47.619 0.00 0.00 45.11 3.61
3375 3518 3.160269 CACAAGGATTTGAAGCTCCCTT 58.840 45.455 0.00 0.00 37.73 3.95
3376 3519 2.556114 CCACAAGGATTTGAAGCTCCCT 60.556 50.000 0.00 0.00 37.73 4.20
3377 3520 1.821136 CCACAAGGATTTGAAGCTCCC 59.179 52.381 0.00 0.00 37.73 4.30
3456 3663 9.918630 ATGAAAACAAAAGATAAGAGATTGGTG 57.081 29.630 0.00 0.00 0.00 4.17
3496 3703 4.000988 AGAAACGGGATAACATGTGACAC 58.999 43.478 0.00 0.00 0.00 3.67
3534 3741 3.550437 AATGGAGGAGGAACATTCTCG 57.450 47.619 0.00 0.00 29.38 4.04
3671 3879 2.102578 GTTGAGGCCCATGCTAACAAT 58.897 47.619 0.00 0.00 37.74 2.71
3687 3905 8.746052 TTTGACTTCTAAGGAATCTTTGTTGA 57.254 30.769 0.00 0.00 34.59 3.18
3729 3947 7.490079 ACAGCATATGACATGCAATTTGTTTAG 59.510 33.333 6.97 0.00 46.77 1.85
3736 3954 5.784578 ATGACAGCATATGACATGCAATT 57.215 34.783 6.97 0.00 46.77 2.32
3790 4008 0.036010 ATGTCACTACACTGCCCAGC 60.036 55.000 0.00 0.00 38.78 4.85
4005 4226 3.692576 CACATAAGCATCTGCAGAAAGC 58.307 45.455 27.68 27.68 45.16 3.51
4020 4241 9.304731 GCAAAATGAAGAATCATAAGCACATAA 57.695 29.630 0.00 0.00 45.60 1.90
4143 4364 1.137282 GTCTTCCCCGATCCTGTCTTC 59.863 57.143 0.00 0.00 0.00 2.87
4155 4376 1.559965 GGTACCCCAGTGTCTTCCCC 61.560 65.000 0.00 0.00 0.00 4.81
4227 4448 2.303175 GCCAAAACCAACACTGTAGGA 58.697 47.619 0.00 0.00 0.00 2.94
4314 4535 3.058224 GGTCCAAACTTACTGTGCATGAC 60.058 47.826 0.00 0.00 0.00 3.06
4363 4584 9.605275 TCCAGTGTATCTCAAGATAAATGAAAG 57.395 33.333 1.35 0.00 38.60 2.62
4374 4595 5.984323 CAGATGTCATCCAGTGTATCTCAAG 59.016 44.000 9.29 0.00 33.63 3.02
4413 4634 5.974108 ACGAGGCAACACTTATATGTAACT 58.026 37.500 0.00 0.00 41.41 2.24
4414 4635 6.420008 CCTACGAGGCAACACTTATATGTAAC 59.580 42.308 0.00 0.00 41.41 2.50
4511 4994 1.089920 CCATTCCAAGACAAGGCTCG 58.910 55.000 0.00 0.00 0.00 5.03
4536 5019 4.978099 AGGATAAGGCATACAGGTTCATG 58.022 43.478 0.00 0.00 0.00 3.07
4544 5027 4.609301 AGGCAAAAAGGATAAGGCATACA 58.391 39.130 0.00 0.00 0.00 2.29
4554 5037 6.019108 ACATCTCCTAAAAGGCAAAAAGGAT 58.981 36.000 0.00 0.00 35.84 3.24
4572 5055 3.209410 CCCAGGAAATGTAGCACATCTC 58.791 50.000 2.85 0.00 37.97 2.75
4574 5057 3.004752 ACCCAGGAAATGTAGCACATC 57.995 47.619 2.85 0.00 37.97 3.06
4583 5066 2.029649 CAGCAACAGAACCCAGGAAATG 60.030 50.000 0.00 0.00 0.00 2.32
4589 5072 0.109342 ACTCCAGCAACAGAACCCAG 59.891 55.000 0.00 0.00 0.00 4.45
4732 5215 4.039730 AGAATATCATTGAGTCGTCCAGGG 59.960 45.833 0.00 0.00 0.00 4.45
4753 5236 6.098982 GGAGACTAATCTTCCTCATTTCCAGA 59.901 42.308 0.00 0.00 34.34 3.86
4774 5257 5.869344 CACAAGTAATGAAATCTGACGGAGA 59.131 40.000 0.00 0.00 34.25 3.71
4779 5262 6.902341 TCAAGCACAAGTAATGAAATCTGAC 58.098 36.000 0.00 0.00 0.00 3.51
5066 5561 9.566432 AGACAAAACATAAAAATGGCCAAATAA 57.434 25.926 10.96 0.00 0.00 1.40
5072 5567 9.435688 AGAAATAGACAAAACATAAAAATGGCC 57.564 29.630 0.00 0.00 0.00 5.36
5085 5580 6.717997 GGGGTGAACCTTAGAAATAGACAAAA 59.282 38.462 0.00 0.00 40.03 2.44
5086 5581 6.045106 AGGGGTGAACCTTAGAAATAGACAAA 59.955 38.462 0.00 0.00 37.69 2.83
5185 5680 3.074390 TGATCTTTGAGCCCCTTTCTTCA 59.926 43.478 0.00 0.00 0.00 3.02
5323 5818 0.834687 TACCAGCCCGAAACTGACCT 60.835 55.000 0.00 0.00 37.32 3.85
5475 5970 6.347696 AGAAATGGCAGAACAATCAACAAAA 58.652 32.000 0.00 0.00 0.00 2.44
5504 5999 6.252655 ACTCTTTAAACAAAACATGCGACAAC 59.747 34.615 0.00 0.00 0.00 3.32
5777 6272 1.885163 CGACTACCACCACCAGGACC 61.885 65.000 0.00 0.00 38.69 4.46
5827 6322 2.040412 GCCCTCCCTAATTCCACCATAG 59.960 54.545 0.00 0.00 0.00 2.23
5914 6409 2.029666 GGGCCATCTCGATCACCG 59.970 66.667 4.39 0.00 40.25 4.94
5995 6490 3.488569 GGGCCCATCCGTCCATCA 61.489 66.667 19.95 0.00 34.94 3.07
6022 6544 2.690653 CTTCCCGTCCACCAAAGCCA 62.691 60.000 0.00 0.00 0.00 4.75
6023 6545 1.971695 CTTCCCGTCCACCAAAGCC 60.972 63.158 0.00 0.00 0.00 4.35
6024 6546 1.971695 CCTTCCCGTCCACCAAAGC 60.972 63.158 0.00 0.00 0.00 3.51
6025 6547 1.303317 CCCTTCCCGTCCACCAAAG 60.303 63.158 0.00 0.00 0.00 2.77
6026 6548 2.840576 CCCTTCCCGTCCACCAAA 59.159 61.111 0.00 0.00 0.00 3.28
6027 6549 3.961414 GCCCTTCCCGTCCACCAA 61.961 66.667 0.00 0.00 0.00 3.67
6030 6552 4.410400 CAGGCCCTTCCCGTCCAC 62.410 72.222 0.00 0.00 34.51 4.02
6033 6555 4.410400 CACCAGGCCCTTCCCGTC 62.410 72.222 0.00 0.00 34.51 4.79
6036 6558 2.168272 AAATCCACCAGGCCCTTCCC 62.168 60.000 0.00 0.00 34.51 3.97
6037 6559 0.972471 CAAATCCACCAGGCCCTTCC 60.972 60.000 0.00 0.00 33.74 3.46
6038 6560 0.972471 CCAAATCCACCAGGCCCTTC 60.972 60.000 0.00 0.00 33.74 3.46
6039 6561 1.079073 CCAAATCCACCAGGCCCTT 59.921 57.895 0.00 0.00 33.74 3.95
6040 6562 2.169810 ACCAAATCCACCAGGCCCT 61.170 57.895 0.00 0.00 33.74 5.19
6041 6563 1.984026 CACCAAATCCACCAGGCCC 60.984 63.158 0.00 0.00 33.74 5.80
6042 6564 1.984026 CCACCAAATCCACCAGGCC 60.984 63.158 0.00 0.00 33.74 5.19
6043 6565 0.541764 TTCCACCAAATCCACCAGGC 60.542 55.000 0.00 0.00 33.74 4.85
6044 6566 1.549203 CTTCCACCAAATCCACCAGG 58.451 55.000 0.00 0.00 0.00 4.45
6045 6567 1.549203 CCTTCCACCAAATCCACCAG 58.451 55.000 0.00 0.00 0.00 4.00
6046 6568 0.114168 CCCTTCCACCAAATCCACCA 59.886 55.000 0.00 0.00 0.00 4.17
6047 6569 0.407918 TCCCTTCCACCAAATCCACC 59.592 55.000 0.00 0.00 0.00 4.61
6048 6570 1.616994 CCTCCCTTCCACCAAATCCAC 60.617 57.143 0.00 0.00 0.00 4.02
6092 6614 1.380380 CAAATCCACCAGGCCCCTC 60.380 63.158 0.00 0.00 33.74 4.30
6093 6615 2.772924 CAAATCCACCAGGCCCCT 59.227 61.111 0.00 0.00 33.74 4.79
6094 6616 2.364186 CCAAATCCACCAGGCCCC 60.364 66.667 0.00 0.00 33.74 5.80
6095 6617 1.984026 CACCAAATCCACCAGGCCC 60.984 63.158 0.00 0.00 33.74 5.80
6096 6618 1.984026 CCACCAAATCCACCAGGCC 60.984 63.158 0.00 0.00 33.74 5.19
6097 6619 0.541764 TTCCACCAAATCCACCAGGC 60.542 55.000 0.00 0.00 33.74 4.85
6098 6620 1.549203 CTTCCACCAAATCCACCAGG 58.451 55.000 0.00 0.00 0.00 4.45
6099 6621 1.549203 CCTTCCACCAAATCCACCAG 58.451 55.000 0.00 0.00 0.00 4.00
6100 6622 0.114168 CCCTTCCACCAAATCCACCA 59.886 55.000 0.00 0.00 0.00 4.17
6101 6623 0.407918 TCCCTTCCACCAAATCCACC 59.592 55.000 0.00 0.00 0.00 4.61
6102 6624 1.616994 CCTCCCTTCCACCAAATCCAC 60.617 57.143 0.00 0.00 0.00 4.02
6103 6625 0.704076 CCTCCCTTCCACCAAATCCA 59.296 55.000 0.00 0.00 0.00 3.41
6104 6626 0.033109 CCCTCCCTTCCACCAAATCC 60.033 60.000 0.00 0.00 0.00 3.01
6105 6627 0.704664 ACCCTCCCTTCCACCAAATC 59.295 55.000 0.00 0.00 0.00 2.17
6106 6628 0.704664 GACCCTCCCTTCCACCAAAT 59.295 55.000 0.00 0.00 0.00 2.32
6107 6629 1.432023 GGACCCTCCCTTCCACCAAA 61.432 60.000 0.00 0.00 0.00 3.28
6108 6630 1.850755 GGACCCTCCCTTCCACCAA 60.851 63.158 0.00 0.00 0.00 3.67
6109 6631 2.204090 GGACCCTCCCTTCCACCA 60.204 66.667 0.00 0.00 0.00 4.17
6110 6632 2.125225 AGGACCCTCCCTTCCACC 59.875 66.667 0.00 0.00 37.19 4.61
6111 6633 2.301738 CCAGGACCCTCCCTTCCAC 61.302 68.421 0.00 0.00 37.19 4.02
6112 6634 2.124996 CCAGGACCCTCCCTTCCA 59.875 66.667 0.00 0.00 37.19 3.53
6113 6635 1.996187 GTCCAGGACCCTCCCTTCC 60.996 68.421 8.65 0.00 37.19 3.46
6114 6636 1.996187 GGTCCAGGACCCTCCCTTC 60.996 68.421 27.03 0.00 46.19 3.46
6115 6637 2.125225 GGTCCAGGACCCTCCCTT 59.875 66.667 27.03 0.00 46.19 3.95
6133 6655 1.304962 TCTCCCGCTGAAGCCACTA 60.305 57.895 0.00 0.00 37.91 2.74
6347 6869 0.757561 TGTGGACCTCGGTCAGAACA 60.758 55.000 17.21 14.20 46.20 3.18
6553 7075 2.343758 GACCAACTCCTGCTGCGA 59.656 61.111 0.00 0.00 0.00 5.10
6637 7159 4.261801 CATCAAAACCAGATCTTACCCGT 58.738 43.478 0.00 0.00 0.00 5.28
7041 7563 6.183360 GCGATAAGCTTAAATTGTTTTGGGTG 60.183 38.462 10.85 0.00 44.04 4.61
7297 7820 3.213206 TGACAATTTGCTCTGTCCAGT 57.787 42.857 0.00 0.00 41.07 4.00
7342 7865 7.872061 ATCTGTACCCACATAATCTCCATTA 57.128 36.000 0.00 0.00 33.14 1.90
7416 7939 9.967346 CATGAGAATTTCAATATTTCAGAGCAT 57.033 29.630 0.00 0.00 39.77 3.79
7444 7968 5.010012 ACAGAACAAGATTTGCGGAAAAGAT 59.990 36.000 6.08 0.00 0.00 2.40
7446 7970 4.610945 ACAGAACAAGATTTGCGGAAAAG 58.389 39.130 6.08 0.00 0.00 2.27
7480 8004 3.754955 TCGTTGCTACAGTCGACTAATG 58.245 45.455 19.57 13.73 0.00 1.90
7483 8007 2.691927 TCTCGTTGCTACAGTCGACTA 58.308 47.619 19.57 2.26 0.00 2.59
7484 8008 1.520494 TCTCGTTGCTACAGTCGACT 58.480 50.000 13.58 13.58 0.00 4.18
7486 8010 2.551032 TCTTTCTCGTTGCTACAGTCGA 59.449 45.455 0.00 0.00 0.00 4.20
7487 8011 2.911723 CTCTTTCTCGTTGCTACAGTCG 59.088 50.000 0.00 0.00 0.00 4.18
7488 8012 3.903360 ACTCTTTCTCGTTGCTACAGTC 58.097 45.455 0.00 0.00 0.00 3.51
7489 8013 5.241064 TCTTACTCTTTCTCGTTGCTACAGT 59.759 40.000 0.00 0.00 0.00 3.55
7490 8014 5.700846 TCTTACTCTTTCTCGTTGCTACAG 58.299 41.667 0.00 0.00 0.00 2.74
7492 8016 5.701855 ACTCTTACTCTTTCTCGTTGCTAC 58.298 41.667 0.00 0.00 0.00 3.58
7494 8018 4.857509 ACTCTTACTCTTTCTCGTTGCT 57.142 40.909 0.00 0.00 0.00 3.91
7495 8019 6.380190 TCTTACTCTTACTCTTTCTCGTTGC 58.620 40.000 0.00 0.00 0.00 4.17
7496 8020 7.586747 ACTCTTACTCTTACTCTTTCTCGTTG 58.413 38.462 0.00 0.00 0.00 4.10
7497 8021 7.748691 ACTCTTACTCTTACTCTTTCTCGTT 57.251 36.000 0.00 0.00 0.00 3.85
7498 8022 7.308710 CCAACTCTTACTCTTACTCTTTCTCGT 60.309 40.741 0.00 0.00 0.00 4.18
7499 8023 7.024768 CCAACTCTTACTCTTACTCTTTCTCG 58.975 42.308 0.00 0.00 0.00 4.04
7500 8024 6.809689 GCCAACTCTTACTCTTACTCTTTCTC 59.190 42.308 0.00 0.00 0.00 2.87
7501 8025 6.295405 GGCCAACTCTTACTCTTACTCTTTCT 60.295 42.308 0.00 0.00 0.00 2.52
7502 8026 5.870433 GGCCAACTCTTACTCTTACTCTTTC 59.130 44.000 0.00 0.00 0.00 2.62
7505 8029 3.444388 CGGCCAACTCTTACTCTTACTCT 59.556 47.826 2.24 0.00 0.00 3.24
7509 8033 4.612264 AAACGGCCAACTCTTACTCTTA 57.388 40.909 2.24 0.00 0.00 2.10
7525 8049 3.131396 ACAGCTACTCAACAGAAAACGG 58.869 45.455 0.00 0.00 0.00 4.44
7583 8113 8.584157 TCTTTTCGTTGTACCATAACCTAGTAA 58.416 33.333 0.00 0.00 0.00 2.24
7620 8150 5.178096 TCTAGATTGAATGGGCACAGAAA 57.822 39.130 0.00 0.00 0.00 2.52
7705 8235 4.742201 CACCGACTCGCCCACCTG 62.742 72.222 0.00 0.00 0.00 4.00
7712 8242 2.279517 CCATAGGCACCGACTCGC 60.280 66.667 0.00 0.00 0.00 5.03
7771 8301 1.153958 GTTTTCAGCATGGCCGCTC 60.154 57.895 1.63 0.00 41.38 5.03
7773 8303 1.734117 GTGTTTTCAGCATGGCCGC 60.734 57.895 0.00 0.00 36.16 6.53
7820 8351 0.251916 CAGGAATACGGCTGGTTCCA 59.748 55.000 25.12 0.00 43.01 3.53
7830 8361 5.689819 CAAGTCTTGGAAAACAGGAATACG 58.310 41.667 4.52 0.00 36.90 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.