Multiple sequence alignment - TraesCS3B01G115600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G115600 chr3B 100.000 3165 0 0 1 3165 82368668 82365504 0.000000e+00 5845
1 TraesCS3B01G115600 chr3B 94.398 2267 84 9 908 3165 823328190 823330422 0.000000e+00 3443
2 TraesCS3B01G115600 chr3B 90.158 884 63 7 608 1470 76135563 76134683 0.000000e+00 1129
3 TraesCS3B01G115600 chr3B 90.952 210 18 1 1 209 82295490 82295281 6.680000e-72 281
4 TraesCS3B01G115600 chr3B 98.131 107 1 1 503 609 82368061 82367956 5.390000e-43 185
5 TraesCS3B01G115600 chr3B 92.920 113 8 0 497 609 792704983 792704871 7.020000e-37 165
6 TraesCS3B01G115600 chr3B 91.525 118 9 1 493 609 806123311 806123428 9.090000e-36 161
7 TraesCS3B01G115600 chr3B 89.062 128 14 0 328 455 246158774 246158901 3.270000e-35 159
8 TraesCS3B01G115600 chr3B 85.124 121 17 1 344 464 199706495 199706614 4.290000e-24 122
9 TraesCS3B01G115600 chr2A 95.866 2564 71 14 608 3165 710248607 710251141 0.000000e+00 4115
10 TraesCS3B01G115600 chr2A 85.417 144 18 3 328 470 551454272 551454413 2.540000e-31 147
11 TraesCS3B01G115600 chr5A 95.637 2567 75 15 608 3165 601209614 601207076 0.000000e+00 4085
12 TraesCS3B01G115600 chr5A 97.365 1708 43 2 1459 3165 3992404 3994110 0.000000e+00 2904
13 TraesCS3B01G115600 chr5A 97.307 557 15 0 896 1452 3991871 3992427 0.000000e+00 946
14 TraesCS3B01G115600 chr6B 94.852 2564 93 11 608 3165 612965813 612968343 0.000000e+00 3967
15 TraesCS3B01G115600 chr6B 95.585 2265 91 6 903 3165 92572160 92574417 0.000000e+00 3620
16 TraesCS3B01G115600 chr6B 91.883 308 15 6 608 910 92571831 92572133 3.770000e-114 422
17 TraesCS3B01G115600 chr6B 94.017 117 6 1 494 609 612965803 612965919 3.240000e-40 176
18 TraesCS3B01G115600 chr6B 92.920 113 8 0 497 609 16458438 16458550 7.020000e-37 165
19 TraesCS3B01G115600 chr4A 97.051 1967 45 5 1200 3165 507909080 507911034 0.000000e+00 3299
20 TraesCS3B01G115600 chr4A 93.874 555 26 5 608 1156 507908530 507909082 0.000000e+00 830
21 TraesCS3B01G115600 chr4A 84.444 135 18 3 328 461 6011238 6011106 2.560000e-26 130
22 TraesCS3B01G115600 chr6A 96.797 1967 52 2 1200 3165 338113284 338115240 0.000000e+00 3273
23 TraesCS3B01G115600 chr6A 93.153 555 28 6 608 1156 338112736 338113286 0.000000e+00 806
24 TraesCS3B01G115600 chr7A 97.542 1709 37 3 1459 3165 664220918 664219213 0.000000e+00 2918
25 TraesCS3B01G115600 chr7A 94.235 850 33 5 608 1452 664221733 664220895 0.000000e+00 1284
26 TraesCS3B01G115600 chr4B 97.307 1708 44 2 1459 3165 531078214 531079920 0.000000e+00 2898
27 TraesCS3B01G115600 chr4B 94.941 850 37 4 608 1452 531077389 531078237 0.000000e+00 1327
28 TraesCS3B01G115600 chr7B 92.588 1808 86 17 608 2389 665248948 665247163 0.000000e+00 2553
29 TraesCS3B01G115600 chr5B 91.339 127 11 0 328 454 267780831 267780957 1.170000e-39 174
30 TraesCS3B01G115600 chr5B 93.913 115 5 2 497 609 414965571 414965457 4.200000e-39 172
31 TraesCS3B01G115600 chr3D 93.805 113 6 1 497 609 460523345 460523456 5.430000e-38 169
32 TraesCS3B01G115600 chr5D 92.982 114 7 1 497 609 492268986 492269099 7.020000e-37 165
33 TraesCS3B01G115600 chr2D 91.597 119 6 4 493 609 190400264 190400380 9.090000e-36 161
34 TraesCS3B01G115600 chr7D 86.957 138 16 2 315 451 218843288 218843424 1.520000e-33 154
35 TraesCS3B01G115600 chr3A 87.121 132 7 3 324 454 686747136 686747258 1.180000e-29 141
36 TraesCS3B01G115600 chr2B 85.496 131 19 0 325 455 719962709 719962839 1.530000e-28 137
37 TraesCS3B01G115600 chr2B 80.986 142 20 6 315 454 9701314 9701450 4.320000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G115600 chr3B 82365504 82368668 3164 True 3015.0 5845 99.0655 1 3165 2 chr3B.!!$R4 3164
1 TraesCS3B01G115600 chr3B 823328190 823330422 2232 False 3443.0 3443 94.3980 908 3165 1 chr3B.!!$F4 2257
2 TraesCS3B01G115600 chr3B 76134683 76135563 880 True 1129.0 1129 90.1580 608 1470 1 chr3B.!!$R1 862
3 TraesCS3B01G115600 chr2A 710248607 710251141 2534 False 4115.0 4115 95.8660 608 3165 1 chr2A.!!$F2 2557
4 TraesCS3B01G115600 chr5A 601207076 601209614 2538 True 4085.0 4085 95.6370 608 3165 1 chr5A.!!$R1 2557
5 TraesCS3B01G115600 chr5A 3991871 3994110 2239 False 1925.0 2904 97.3360 896 3165 2 chr5A.!!$F1 2269
6 TraesCS3B01G115600 chr6B 612965803 612968343 2540 False 2071.5 3967 94.4345 494 3165 2 chr6B.!!$F3 2671
7 TraesCS3B01G115600 chr6B 92571831 92574417 2586 False 2021.0 3620 93.7340 608 3165 2 chr6B.!!$F2 2557
8 TraesCS3B01G115600 chr4A 507908530 507911034 2504 False 2064.5 3299 95.4625 608 3165 2 chr4A.!!$F1 2557
9 TraesCS3B01G115600 chr6A 338112736 338115240 2504 False 2039.5 3273 94.9750 608 3165 2 chr6A.!!$F1 2557
10 TraesCS3B01G115600 chr7A 664219213 664221733 2520 True 2101.0 2918 95.8885 608 3165 2 chr7A.!!$R1 2557
11 TraesCS3B01G115600 chr4B 531077389 531079920 2531 False 2112.5 2898 96.1240 608 3165 2 chr4B.!!$F1 2557
12 TraesCS3B01G115600 chr7B 665247163 665248948 1785 True 2553.0 2553 92.5880 608 2389 1 chr7B.!!$R1 1781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 576 0.036294 CACGGGAGGGAGAAAAGACC 60.036 60.0 0.0 0.0 32.31 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2277 2405 1.480137 TGTTGGGGTTGCAAAGAAGTG 59.52 47.619 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.740822 AGGTGGGCCGCCATTGTC 62.741 66.667 36.06 9.81 40.50 3.18
19 20 2.755469 GTGGGCCGCCATTGTCAT 60.755 61.111 12.58 0.00 0.00 3.06
20 21 2.755064 TGGGCCGCCATTGTCATG 60.755 61.111 12.58 0.00 0.00 3.07
29 30 1.548081 CCATTGTCATGGGCTTCACA 58.452 50.000 0.00 0.00 45.99 3.58
30 31 1.203052 CCATTGTCATGGGCTTCACAC 59.797 52.381 0.00 0.00 45.99 3.82
31 32 2.165167 CATTGTCATGGGCTTCACACT 58.835 47.619 0.00 0.00 0.00 3.55
32 33 1.608055 TTGTCATGGGCTTCACACTG 58.392 50.000 0.00 0.00 0.00 3.66
33 34 0.473755 TGTCATGGGCTTCACACTGT 59.526 50.000 0.00 0.00 0.00 3.55
34 35 1.696884 TGTCATGGGCTTCACACTGTA 59.303 47.619 0.00 0.00 0.00 2.74
35 36 2.076863 GTCATGGGCTTCACACTGTAC 58.923 52.381 0.00 0.00 0.00 2.90
36 37 1.977854 TCATGGGCTTCACACTGTACT 59.022 47.619 0.00 0.00 0.00 2.73
37 38 2.371841 TCATGGGCTTCACACTGTACTT 59.628 45.455 0.00 0.00 0.00 2.24
38 39 3.149196 CATGGGCTTCACACTGTACTTT 58.851 45.455 0.00 0.00 0.00 2.66
39 40 3.290948 TGGGCTTCACACTGTACTTTT 57.709 42.857 0.00 0.00 0.00 2.27
40 41 3.626930 TGGGCTTCACACTGTACTTTTT 58.373 40.909 0.00 0.00 0.00 1.94
73 74 8.773404 ATTTTTATAGTACATATCCGACAGCC 57.227 34.615 0.00 0.00 0.00 4.85
74 75 6.904463 TTTATAGTACATATCCGACAGCCA 57.096 37.500 0.00 0.00 0.00 4.75
75 76 6.510879 TTATAGTACATATCCGACAGCCAG 57.489 41.667 0.00 0.00 0.00 4.85
76 77 1.964223 AGTACATATCCGACAGCCAGG 59.036 52.381 0.00 0.00 0.00 4.45
77 78 0.679505 TACATATCCGACAGCCAGGC 59.320 55.000 1.84 1.84 0.00 4.85
78 79 1.050988 ACATATCCGACAGCCAGGCT 61.051 55.000 8.70 8.70 40.77 4.58
79 80 0.107456 CATATCCGACAGCCAGGCTT 59.893 55.000 12.86 3.15 36.40 4.35
80 81 0.394565 ATATCCGACAGCCAGGCTTC 59.605 55.000 12.86 12.06 36.40 3.86
81 82 0.975556 TATCCGACAGCCAGGCTTCA 60.976 55.000 12.86 0.00 36.40 3.02
82 83 2.527951 ATCCGACAGCCAGGCTTCAC 62.528 60.000 12.86 5.18 36.40 3.18
83 84 3.114616 CGACAGCCAGGCTTCACG 61.115 66.667 12.86 13.95 36.40 4.35
84 85 2.343758 GACAGCCAGGCTTCACGA 59.656 61.111 12.86 0.00 36.40 4.35
85 86 1.301716 GACAGCCAGGCTTCACGAA 60.302 57.895 12.86 0.00 36.40 3.85
86 87 0.884704 GACAGCCAGGCTTCACGAAA 60.885 55.000 12.86 0.00 36.40 3.46
87 88 1.166531 ACAGCCAGGCTTCACGAAAC 61.167 55.000 12.86 0.00 36.40 2.78
88 89 1.148273 AGCCAGGCTTCACGAAACA 59.852 52.632 8.70 0.00 33.89 2.83
89 90 0.886490 AGCCAGGCTTCACGAAACAG 60.886 55.000 8.70 0.00 33.89 3.16
90 91 1.856265 GCCAGGCTTCACGAAACAGG 61.856 60.000 3.29 0.00 0.00 4.00
91 92 0.535102 CCAGGCTTCACGAAACAGGT 60.535 55.000 0.00 0.00 0.00 4.00
92 93 0.868406 CAGGCTTCACGAAACAGGTC 59.132 55.000 0.00 0.00 0.00 3.85
93 94 0.468226 AGGCTTCACGAAACAGGTCA 59.532 50.000 0.00 0.00 0.00 4.02
94 95 0.586802 GGCTTCACGAAACAGGTCAC 59.413 55.000 0.00 0.00 0.00 3.67
95 96 0.586802 GCTTCACGAAACAGGTCACC 59.413 55.000 0.00 0.00 0.00 4.02
96 97 1.948104 CTTCACGAAACAGGTCACCA 58.052 50.000 0.00 0.00 0.00 4.17
97 98 2.285083 CTTCACGAAACAGGTCACCAA 58.715 47.619 0.00 0.00 0.00 3.67
98 99 1.658994 TCACGAAACAGGTCACCAAC 58.341 50.000 0.00 0.00 0.00 3.77
99 100 1.208535 TCACGAAACAGGTCACCAACT 59.791 47.619 0.00 0.00 0.00 3.16
100 101 2.014128 CACGAAACAGGTCACCAACTT 58.986 47.619 0.00 0.00 0.00 2.66
101 102 2.031683 CACGAAACAGGTCACCAACTTC 59.968 50.000 0.00 0.00 0.00 3.01
102 103 2.285083 CGAAACAGGTCACCAACTTCA 58.715 47.619 0.00 0.00 0.00 3.02
103 104 2.878406 CGAAACAGGTCACCAACTTCAT 59.122 45.455 0.00 0.00 0.00 2.57
104 105 3.303990 CGAAACAGGTCACCAACTTCATG 60.304 47.826 0.00 0.00 0.00 3.07
105 106 2.276732 ACAGGTCACCAACTTCATGG 57.723 50.000 0.00 0.00 46.38 3.66
113 114 2.686558 CCAACTTCATGGTGTGTTCG 57.313 50.000 0.00 0.00 35.65 3.95
114 115 1.946768 CCAACTTCATGGTGTGTTCGT 59.053 47.619 0.00 0.00 35.65 3.85
115 116 2.286950 CCAACTTCATGGTGTGTTCGTG 60.287 50.000 0.00 0.00 35.65 4.35
116 117 1.593196 ACTTCATGGTGTGTTCGTGG 58.407 50.000 0.00 0.00 0.00 4.94
117 118 0.238289 CTTCATGGTGTGTTCGTGGC 59.762 55.000 0.00 0.00 0.00 5.01
118 119 0.179032 TTCATGGTGTGTTCGTGGCT 60.179 50.000 0.00 0.00 0.00 4.75
119 120 0.179032 TCATGGTGTGTTCGTGGCTT 60.179 50.000 0.00 0.00 0.00 4.35
120 121 0.667993 CATGGTGTGTTCGTGGCTTT 59.332 50.000 0.00 0.00 0.00 3.51
121 122 1.066908 CATGGTGTGTTCGTGGCTTTT 59.933 47.619 0.00 0.00 0.00 2.27
122 123 0.736053 TGGTGTGTTCGTGGCTTTTC 59.264 50.000 0.00 0.00 0.00 2.29
123 124 1.021968 GGTGTGTTCGTGGCTTTTCT 58.978 50.000 0.00 0.00 0.00 2.52
124 125 2.215196 GGTGTGTTCGTGGCTTTTCTA 58.785 47.619 0.00 0.00 0.00 2.10
125 126 2.223377 GGTGTGTTCGTGGCTTTTCTAG 59.777 50.000 0.00 0.00 0.00 2.43
126 127 2.223377 GTGTGTTCGTGGCTTTTCTAGG 59.777 50.000 0.00 0.00 0.00 3.02
127 128 2.103432 TGTGTTCGTGGCTTTTCTAGGA 59.897 45.455 0.00 0.00 0.00 2.94
128 129 3.135994 GTGTTCGTGGCTTTTCTAGGAA 58.864 45.455 0.00 0.00 0.00 3.36
129 130 3.059120 GTGTTCGTGGCTTTTCTAGGAAC 60.059 47.826 0.00 0.00 45.38 3.62
130 131 3.135994 GTTCGTGGCTTTTCTAGGAACA 58.864 45.455 8.31 0.00 44.88 3.18
131 132 3.695830 TCGTGGCTTTTCTAGGAACAT 57.304 42.857 0.00 0.00 0.00 2.71
132 133 3.596214 TCGTGGCTTTTCTAGGAACATC 58.404 45.455 0.00 0.00 0.00 3.06
133 134 2.678336 CGTGGCTTTTCTAGGAACATCC 59.322 50.000 0.00 0.00 36.58 3.51
134 135 3.686016 GTGGCTTTTCTAGGAACATCCA 58.314 45.455 0.00 0.00 39.61 3.41
135 136 4.273318 GTGGCTTTTCTAGGAACATCCAT 58.727 43.478 0.00 0.00 39.61 3.41
136 137 5.437060 GTGGCTTTTCTAGGAACATCCATA 58.563 41.667 0.00 0.00 39.61 2.74
137 138 6.064717 GTGGCTTTTCTAGGAACATCCATAT 58.935 40.000 0.00 0.00 39.61 1.78
138 139 6.547510 GTGGCTTTTCTAGGAACATCCATATT 59.452 38.462 0.00 0.00 39.61 1.28
139 140 7.068716 GTGGCTTTTCTAGGAACATCCATATTT 59.931 37.037 0.00 0.00 39.61 1.40
140 141 7.619302 TGGCTTTTCTAGGAACATCCATATTTT 59.381 33.333 0.00 0.00 39.61 1.82
141 142 9.131791 GGCTTTTCTAGGAACATCCATATTTTA 57.868 33.333 0.00 0.00 39.61 1.52
142 143 9.952188 GCTTTTCTAGGAACATCCATATTTTAC 57.048 33.333 0.00 0.00 39.61 2.01
151 152 9.899226 GGAACATCCATATTTTACTGATTAAGC 57.101 33.333 0.00 0.00 36.28 3.09
174 175 8.579850 AGCAACAAAGTCATATAAAATCTCCA 57.420 30.769 0.00 0.00 0.00 3.86
175 176 9.193806 AGCAACAAAGTCATATAAAATCTCCAT 57.806 29.630 0.00 0.00 0.00 3.41
190 191 8.443953 AAAATCTCCATAATACACTTCAGAGC 57.556 34.615 0.00 0.00 0.00 4.09
191 192 6.737720 ATCTCCATAATACACTTCAGAGCA 57.262 37.500 0.00 0.00 0.00 4.26
192 193 6.737720 TCTCCATAATACACTTCAGAGCAT 57.262 37.500 0.00 0.00 0.00 3.79
193 194 7.839680 TCTCCATAATACACTTCAGAGCATA 57.160 36.000 0.00 0.00 0.00 3.14
194 195 8.250143 TCTCCATAATACACTTCAGAGCATAA 57.750 34.615 0.00 0.00 0.00 1.90
195 196 8.874156 TCTCCATAATACACTTCAGAGCATAAT 58.126 33.333 0.00 0.00 0.00 1.28
196 197 8.837788 TCCATAATACACTTCAGAGCATAATG 57.162 34.615 0.00 0.00 0.00 1.90
197 198 8.650490 TCCATAATACACTTCAGAGCATAATGA 58.350 33.333 0.00 0.00 0.00 2.57
198 199 9.276590 CCATAATACACTTCAGAGCATAATGAA 57.723 33.333 0.00 0.00 34.41 2.57
202 203 8.798859 ATACACTTCAGAGCATAATGAAAAGT 57.201 30.769 0.00 0.00 35.14 2.66
203 204 9.890629 ATACACTTCAGAGCATAATGAAAAGTA 57.109 29.630 0.00 0.00 35.14 2.24
204 205 8.034058 ACACTTCAGAGCATAATGAAAAGTAC 57.966 34.615 0.00 0.00 35.14 2.73
205 206 7.661437 ACACTTCAGAGCATAATGAAAAGTACA 59.339 33.333 0.00 0.00 35.14 2.90
206 207 8.671921 CACTTCAGAGCATAATGAAAAGTACAT 58.328 33.333 0.00 0.00 35.14 2.29
207 208 8.671921 ACTTCAGAGCATAATGAAAAGTACATG 58.328 33.333 0.00 0.00 35.14 3.21
208 209 8.791327 TTCAGAGCATAATGAAAAGTACATGA 57.209 30.769 0.00 0.00 32.66 3.07
209 210 8.969260 TCAGAGCATAATGAAAAGTACATGAT 57.031 30.769 0.00 0.00 0.00 2.45
210 211 9.399797 TCAGAGCATAATGAAAAGTACATGATT 57.600 29.630 0.00 0.00 0.00 2.57
211 212 9.447040 CAGAGCATAATGAAAAGTACATGATTG 57.553 33.333 0.00 0.00 0.00 2.67
212 213 9.399797 AGAGCATAATGAAAAGTACATGATTGA 57.600 29.630 0.00 0.00 0.00 2.57
213 214 9.443283 GAGCATAATGAAAAGTACATGATTGAC 57.557 33.333 0.00 0.00 0.00 3.18
214 215 9.182214 AGCATAATGAAAAGTACATGATTGACT 57.818 29.630 0.00 0.00 0.00 3.41
215 216 9.229784 GCATAATGAAAAGTACATGATTGACTG 57.770 33.333 0.00 0.00 0.00 3.51
219 220 7.800155 TGAAAAGTACATGATTGACTGAACA 57.200 32.000 0.00 0.00 0.00 3.18
220 221 7.639039 TGAAAAGTACATGATTGACTGAACAC 58.361 34.615 0.00 0.00 0.00 3.32
221 222 6.560253 AAAGTACATGATTGACTGAACACC 57.440 37.500 0.00 0.00 0.00 4.16
222 223 5.489792 AGTACATGATTGACTGAACACCT 57.510 39.130 0.00 0.00 0.00 4.00
223 224 6.605471 AGTACATGATTGACTGAACACCTA 57.395 37.500 0.00 0.00 0.00 3.08
224 225 6.398918 AGTACATGATTGACTGAACACCTAC 58.601 40.000 0.00 0.00 0.00 3.18
225 226 5.227569 ACATGATTGACTGAACACCTACA 57.772 39.130 0.00 0.00 0.00 2.74
226 227 5.240891 ACATGATTGACTGAACACCTACAG 58.759 41.667 0.00 0.00 39.65 2.74
227 228 4.271696 TGATTGACTGAACACCTACAGG 57.728 45.455 0.00 0.00 38.30 4.00
228 229 3.901222 TGATTGACTGAACACCTACAGGA 59.099 43.478 1.29 0.00 38.30 3.86
229 230 3.746045 TTGACTGAACACCTACAGGAC 57.254 47.619 1.29 0.00 38.30 3.85
230 231 2.958818 TGACTGAACACCTACAGGACT 58.041 47.619 1.29 0.00 38.30 3.85
231 232 3.305720 TGACTGAACACCTACAGGACTT 58.694 45.455 1.29 0.00 38.30 3.01
232 233 3.069586 TGACTGAACACCTACAGGACTTG 59.930 47.826 1.29 0.00 38.30 3.16
233 234 2.368875 ACTGAACACCTACAGGACTTGG 59.631 50.000 1.29 0.00 38.30 3.61
234 235 1.071699 TGAACACCTACAGGACTTGGC 59.928 52.381 1.29 0.00 38.94 4.52
235 236 1.348036 GAACACCTACAGGACTTGGCT 59.652 52.381 1.29 0.00 38.94 4.75
236 237 2.320681 ACACCTACAGGACTTGGCTA 57.679 50.000 1.29 0.00 38.94 3.93
237 238 2.616524 ACACCTACAGGACTTGGCTAA 58.383 47.619 1.29 0.00 38.94 3.09
238 239 2.976882 ACACCTACAGGACTTGGCTAAA 59.023 45.455 1.29 0.00 38.94 1.85
239 240 3.393278 ACACCTACAGGACTTGGCTAAAA 59.607 43.478 1.29 0.00 38.94 1.52
240 241 3.751698 CACCTACAGGACTTGGCTAAAAC 59.248 47.826 1.29 0.00 38.94 2.43
241 242 3.651423 ACCTACAGGACTTGGCTAAAACT 59.349 43.478 1.29 0.00 38.94 2.66
242 243 4.104261 ACCTACAGGACTTGGCTAAAACTT 59.896 41.667 1.29 0.00 38.94 2.66
243 244 5.308759 ACCTACAGGACTTGGCTAAAACTTA 59.691 40.000 1.29 0.00 38.94 2.24
244 245 5.875359 CCTACAGGACTTGGCTAAAACTTAG 59.125 44.000 0.00 0.00 37.39 2.18
245 246 4.072839 ACAGGACTTGGCTAAAACTTAGC 58.927 43.478 9.46 9.46 39.70 3.09
253 254 1.925185 GCTAAAACTTAGCCCTCGACG 59.075 52.381 7.09 0.00 34.65 5.12
254 255 2.537401 CTAAAACTTAGCCCTCGACGG 58.463 52.381 0.00 0.00 0.00 4.79
255 256 0.683412 AAAACTTAGCCCTCGACGGT 59.317 50.000 2.30 0.00 0.00 4.83
256 257 0.245813 AAACTTAGCCCTCGACGGTC 59.754 55.000 2.30 0.00 0.00 4.79
257 258 0.611340 AACTTAGCCCTCGACGGTCT 60.611 55.000 6.57 3.13 0.00 3.85
258 259 1.313812 ACTTAGCCCTCGACGGTCTG 61.314 60.000 6.57 0.31 0.00 3.51
259 260 1.303888 TTAGCCCTCGACGGTCTGT 60.304 57.895 6.57 0.00 0.00 3.41
260 261 0.896940 TTAGCCCTCGACGGTCTGTT 60.897 55.000 6.57 0.00 0.00 3.16
261 262 0.896940 TAGCCCTCGACGGTCTGTTT 60.897 55.000 6.57 0.00 0.00 2.83
262 263 1.737008 GCCCTCGACGGTCTGTTTC 60.737 63.158 6.57 0.00 0.00 2.78
263 264 1.443872 CCCTCGACGGTCTGTTTCG 60.444 63.158 6.57 0.00 0.00 3.46
264 265 1.577922 CCTCGACGGTCTGTTTCGA 59.422 57.895 6.57 0.00 39.38 3.71
265 266 0.728466 CCTCGACGGTCTGTTTCGAC 60.728 60.000 6.57 0.00 36.87 4.20
266 267 0.237761 CTCGACGGTCTGTTTCGACT 59.762 55.000 6.57 0.00 36.87 4.18
267 268 0.236711 TCGACGGTCTGTTTCGACTC 59.763 55.000 6.57 0.00 36.87 3.36
268 269 0.040692 CGACGGTCTGTTTCGACTCA 60.041 55.000 6.57 0.00 34.62 3.41
269 270 1.687628 GACGGTCTGTTTCGACTCAG 58.312 55.000 0.00 9.06 34.38 3.35
270 271 0.318784 ACGGTCTGTTTCGACTCAGC 60.319 55.000 10.16 6.56 34.38 4.26
271 272 0.039074 CGGTCTGTTTCGACTCAGCT 60.039 55.000 10.16 0.00 34.38 4.24
272 273 1.603172 CGGTCTGTTTCGACTCAGCTT 60.603 52.381 10.16 0.00 34.38 3.74
273 274 2.351447 CGGTCTGTTTCGACTCAGCTTA 60.351 50.000 10.16 0.00 34.38 3.09
274 275 3.650139 GGTCTGTTTCGACTCAGCTTAA 58.350 45.455 10.16 0.00 34.38 1.85
275 276 3.675698 GGTCTGTTTCGACTCAGCTTAAG 59.324 47.826 10.16 0.00 34.38 1.85
276 277 4.547532 GTCTGTTTCGACTCAGCTTAAGA 58.452 43.478 6.67 0.00 0.00 2.10
277 278 4.383351 GTCTGTTTCGACTCAGCTTAAGAC 59.617 45.833 6.67 0.00 0.00 3.01
278 279 3.650139 TGTTTCGACTCAGCTTAAGACC 58.350 45.455 6.67 0.00 0.00 3.85
279 280 2.631418 TTCGACTCAGCTTAAGACCG 57.369 50.000 6.67 0.00 0.00 4.79
280 281 0.809385 TCGACTCAGCTTAAGACCGG 59.191 55.000 6.67 0.00 0.00 5.28
281 282 0.809385 CGACTCAGCTTAAGACCGGA 59.191 55.000 9.46 0.00 0.00 5.14
282 283 1.467713 CGACTCAGCTTAAGACCGGAC 60.468 57.143 9.46 0.10 0.00 4.79
283 284 1.544691 GACTCAGCTTAAGACCGGACA 59.455 52.381 9.46 0.00 0.00 4.02
284 285 2.166664 GACTCAGCTTAAGACCGGACAT 59.833 50.000 9.46 0.00 0.00 3.06
285 286 2.093973 ACTCAGCTTAAGACCGGACATG 60.094 50.000 9.46 0.00 0.00 3.21
286 287 1.899814 TCAGCTTAAGACCGGACATGT 59.100 47.619 9.46 0.00 0.00 3.21
287 288 2.002586 CAGCTTAAGACCGGACATGTG 58.997 52.381 9.46 0.00 0.00 3.21
288 289 1.623811 AGCTTAAGACCGGACATGTGT 59.376 47.619 9.46 0.00 0.00 3.72
289 290 2.000447 GCTTAAGACCGGACATGTGTC 59.000 52.381 9.46 4.71 44.04 3.67
290 291 2.353803 GCTTAAGACCGGACATGTGTCT 60.354 50.000 9.46 7.34 44.20 3.41
292 293 2.457366 AAGACCGGACATGTGTCTTC 57.543 50.000 19.20 5.42 43.87 2.87
293 294 0.243907 AGACCGGACATGTGTCTTCG 59.756 55.000 9.46 8.54 44.20 3.79
294 295 0.038526 GACCGGACATGTGTCTTCGT 60.039 55.000 9.46 6.57 44.20 3.85
295 296 0.391597 ACCGGACATGTGTCTTCGTT 59.608 50.000 9.46 0.00 44.20 3.85
296 297 1.614903 ACCGGACATGTGTCTTCGTTA 59.385 47.619 9.46 0.00 44.20 3.18
297 298 2.232941 ACCGGACATGTGTCTTCGTTAT 59.767 45.455 9.46 0.00 44.20 1.89
298 299 2.603110 CCGGACATGTGTCTTCGTTATG 59.397 50.000 1.15 0.00 44.20 1.90
299 300 3.507786 CGGACATGTGTCTTCGTTATGA 58.492 45.455 1.15 0.00 44.20 2.15
300 301 3.924073 CGGACATGTGTCTTCGTTATGAA 59.076 43.478 1.15 0.00 44.20 2.57
301 302 4.387559 CGGACATGTGTCTTCGTTATGAAA 59.612 41.667 1.15 0.00 44.20 2.69
302 303 5.107259 CGGACATGTGTCTTCGTTATGAAAA 60.107 40.000 1.15 0.00 44.20 2.29
303 304 6.565060 CGGACATGTGTCTTCGTTATGAAAAA 60.565 38.462 1.15 0.00 44.20 1.94
330 331 9.833917 AAAGACTTAGCTAAAACAAGAACTACT 57.166 29.630 7.74 0.00 0.00 2.57
331 332 9.833917 AAGACTTAGCTAAAACAAGAACTACTT 57.166 29.630 7.74 0.02 39.70 2.24
332 333 9.478768 AGACTTAGCTAAAACAAGAACTACTTC 57.521 33.333 7.74 0.00 36.61 3.01
333 334 8.604640 ACTTAGCTAAAACAAGAACTACTTCC 57.395 34.615 7.74 0.00 36.61 3.46
334 335 8.430431 ACTTAGCTAAAACAAGAACTACTTCCT 58.570 33.333 7.74 0.00 36.61 3.36
335 336 8.828688 TTAGCTAAAACAAGAACTACTTCCTC 57.171 34.615 2.97 0.00 36.61 3.71
336 337 6.231951 AGCTAAAACAAGAACTACTTCCTCC 58.768 40.000 0.00 0.00 36.61 4.30
337 338 5.120363 GCTAAAACAAGAACTACTTCCTCCG 59.880 44.000 0.00 0.00 36.61 4.63
338 339 4.684484 AAACAAGAACTACTTCCTCCGT 57.316 40.909 0.00 0.00 36.61 4.69
339 340 3.938289 ACAAGAACTACTTCCTCCGTC 57.062 47.619 0.00 0.00 36.61 4.79
340 341 2.561858 ACAAGAACTACTTCCTCCGTCC 59.438 50.000 0.00 0.00 36.61 4.79
341 342 1.461559 AGAACTACTTCCTCCGTCCG 58.538 55.000 0.00 0.00 0.00 4.79
342 343 0.455005 GAACTACTTCCTCCGTCCGG 59.545 60.000 0.00 0.00 0.00 5.14
343 344 0.038744 AACTACTTCCTCCGTCCGGA 59.961 55.000 0.00 0.00 42.90 5.14
344 345 0.038744 ACTACTTCCTCCGTCCGGAA 59.961 55.000 5.23 0.00 44.66 4.30
345 346 1.180029 CTACTTCCTCCGTCCGGAAA 58.820 55.000 5.23 1.47 44.66 3.13
346 347 1.755380 CTACTTCCTCCGTCCGGAAAT 59.245 52.381 5.23 0.00 44.66 2.17
347 348 0.535797 ACTTCCTCCGTCCGGAAATC 59.464 55.000 5.23 0.00 44.66 2.17
348 349 0.179081 CTTCCTCCGTCCGGAAATCC 60.179 60.000 5.23 0.00 44.66 3.01
349 350 0.616679 TTCCTCCGTCCGGAAATCCT 60.617 55.000 5.23 0.00 44.66 3.24
350 351 0.616679 TCCTCCGTCCGGAAATCCTT 60.617 55.000 5.23 0.00 44.66 3.36
351 352 0.462047 CCTCCGTCCGGAAATCCTTG 60.462 60.000 5.23 0.00 44.66 3.61
352 353 0.249398 CTCCGTCCGGAAATCCTTGT 59.751 55.000 5.23 0.00 44.66 3.16
353 354 0.248289 TCCGTCCGGAAATCCTTGTC 59.752 55.000 5.23 0.00 42.05 3.18
354 355 0.036765 CCGTCCGGAAATCCTTGTCA 60.037 55.000 5.23 0.00 37.50 3.58
355 356 1.406887 CCGTCCGGAAATCCTTGTCAT 60.407 52.381 5.23 0.00 37.50 3.06
356 357 1.933853 CGTCCGGAAATCCTTGTCATC 59.066 52.381 5.23 0.00 0.00 2.92
357 358 2.676750 CGTCCGGAAATCCTTGTCATCA 60.677 50.000 5.23 0.00 0.00 3.07
358 359 3.343617 GTCCGGAAATCCTTGTCATCAA 58.656 45.455 5.23 0.00 0.00 2.57
359 360 3.756434 GTCCGGAAATCCTTGTCATCAAA 59.244 43.478 5.23 0.00 32.87 2.69
360 361 4.217550 GTCCGGAAATCCTTGTCATCAAAA 59.782 41.667 5.23 0.00 32.87 2.44
361 362 5.016173 TCCGGAAATCCTTGTCATCAAAAT 58.984 37.500 0.00 0.00 32.87 1.82
362 363 5.104374 CCGGAAATCCTTGTCATCAAAATG 58.896 41.667 0.00 0.00 32.87 2.32
363 364 5.105797 CCGGAAATCCTTGTCATCAAAATGA 60.106 40.000 0.00 0.00 39.63 2.57
364 365 6.389091 CGGAAATCCTTGTCATCAAAATGAA 58.611 36.000 0.00 0.00 43.42 2.57
365 366 7.037438 CGGAAATCCTTGTCATCAAAATGAAT 58.963 34.615 0.00 0.00 43.42 2.57
366 367 8.190122 CGGAAATCCTTGTCATCAAAATGAATA 58.810 33.333 0.00 0.00 43.42 1.75
367 368 9.874205 GGAAATCCTTGTCATCAAAATGAATAA 57.126 29.630 0.00 0.00 43.42 1.40
377 378 9.962759 GTCATCAAAATGAATAAAAAGTGATGC 57.037 29.630 0.00 0.00 43.42 3.91
378 379 9.708092 TCATCAAAATGAATAAAAAGTGATGCA 57.292 25.926 0.00 0.00 40.44 3.96
381 382 9.932207 TCAAAATGAATAAAAAGTGATGCATCT 57.068 25.926 26.32 8.58 0.00 2.90
387 388 9.399797 TGAATAAAAAGTGATGCATCTAGATGT 57.600 29.630 28.92 14.10 40.80 3.06
433 434 9.381033 TCATTTTTGTTCATTTTGATGACAAGT 57.619 25.926 0.00 0.00 37.32 3.16
434 435 9.991388 CATTTTTGTTCATTTTGATGACAAGTT 57.009 25.926 0.00 0.00 37.32 2.66
452 453 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
453 454 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
454 455 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
455 456 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
456 457 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
457 458 0.179000 TCGGACGGAGGGAGTACTAC 59.821 60.000 0.00 0.00 0.00 2.73
458 459 0.107508 CGGACGGAGGGAGTACTACA 60.108 60.000 7.57 0.00 0.00 2.74
459 460 1.476471 CGGACGGAGGGAGTACTACAT 60.476 57.143 7.57 0.00 0.00 2.29
460 461 2.664015 GGACGGAGGGAGTACTACATT 58.336 52.381 7.57 0.00 0.00 2.71
461 462 3.745480 CGGACGGAGGGAGTACTACATTA 60.745 52.174 7.57 0.00 0.00 1.90
462 463 4.210331 GGACGGAGGGAGTACTACATTAA 58.790 47.826 7.57 0.00 0.00 1.40
463 464 4.277921 GGACGGAGGGAGTACTACATTAAG 59.722 50.000 7.57 0.00 0.00 1.85
464 465 4.213513 ACGGAGGGAGTACTACATTAAGG 58.786 47.826 7.57 0.00 0.00 2.69
465 466 4.213513 CGGAGGGAGTACTACATTAAGGT 58.786 47.826 7.57 0.00 0.00 3.50
466 467 4.277921 CGGAGGGAGTACTACATTAAGGTC 59.722 50.000 7.57 0.00 0.00 3.85
467 468 5.456779 GGAGGGAGTACTACATTAAGGTCT 58.543 45.833 7.57 0.00 0.00 3.85
468 469 5.898397 GGAGGGAGTACTACATTAAGGTCTT 59.102 44.000 7.57 0.00 0.00 3.01
469 470 6.183360 GGAGGGAGTACTACATTAAGGTCTTG 60.183 46.154 7.57 0.00 0.00 3.02
470 471 6.500336 AGGGAGTACTACATTAAGGTCTTGA 58.500 40.000 7.57 0.00 0.00 3.02
471 472 7.133483 AGGGAGTACTACATTAAGGTCTTGAT 58.867 38.462 7.57 0.00 0.00 2.57
472 473 7.070074 AGGGAGTACTACATTAAGGTCTTGATG 59.930 40.741 7.57 12.12 40.88 3.07
473 474 7.069578 GGGAGTACTACATTAAGGTCTTGATGA 59.930 40.741 18.27 5.47 38.40 2.92
474 475 8.138712 GGAGTACTACATTAAGGTCTTGATGAG 58.861 40.741 18.27 13.74 38.40 2.90
475 476 7.493367 AGTACTACATTAAGGTCTTGATGAGC 58.507 38.462 18.27 6.82 38.40 4.26
476 477 5.352284 ACTACATTAAGGTCTTGATGAGCG 58.648 41.667 18.27 10.21 46.86 5.03
477 478 4.207891 ACATTAAGGTCTTGATGAGCGT 57.792 40.909 18.27 0.00 46.86 5.07
478 479 3.935203 ACATTAAGGTCTTGATGAGCGTG 59.065 43.478 18.27 0.00 46.86 5.34
479 480 2.010145 TAAGGTCTTGATGAGCGTGC 57.990 50.000 0.00 0.00 46.86 5.34
480 481 0.322975 AAGGTCTTGATGAGCGTGCT 59.677 50.000 0.00 0.00 46.86 4.40
481 482 0.322975 AGGTCTTGATGAGCGTGCTT 59.677 50.000 0.00 0.00 46.86 3.91
482 483 0.445436 GGTCTTGATGAGCGTGCTTG 59.555 55.000 0.00 0.00 33.25 4.01
483 484 0.445436 GTCTTGATGAGCGTGCTTGG 59.555 55.000 0.00 0.00 0.00 3.61
484 485 0.321346 TCTTGATGAGCGTGCTTGGA 59.679 50.000 0.00 0.00 0.00 3.53
485 486 1.159285 CTTGATGAGCGTGCTTGGAA 58.841 50.000 0.00 0.00 0.00 3.53
486 487 1.129998 CTTGATGAGCGTGCTTGGAAG 59.870 52.381 0.00 0.00 0.00 3.46
487 488 0.321346 TGATGAGCGTGCTTGGAAGA 59.679 50.000 0.00 0.00 0.00 2.87
488 489 1.270785 TGATGAGCGTGCTTGGAAGAA 60.271 47.619 0.00 0.00 0.00 2.52
489 490 1.806542 GATGAGCGTGCTTGGAAGAAA 59.193 47.619 0.00 0.00 0.00 2.52
490 491 1.896220 TGAGCGTGCTTGGAAGAAAT 58.104 45.000 0.00 0.00 0.00 2.17
491 492 1.806542 TGAGCGTGCTTGGAAGAAATC 59.193 47.619 0.00 0.00 0.00 2.17
492 493 2.079925 GAGCGTGCTTGGAAGAAATCT 58.920 47.619 0.00 0.00 0.00 2.40
493 494 3.262420 GAGCGTGCTTGGAAGAAATCTA 58.738 45.455 0.00 0.00 0.00 1.98
494 495 3.674997 AGCGTGCTTGGAAGAAATCTAA 58.325 40.909 0.00 0.00 0.00 2.10
495 496 3.437049 AGCGTGCTTGGAAGAAATCTAAC 59.563 43.478 0.00 0.00 0.00 2.34
496 497 3.188460 GCGTGCTTGGAAGAAATCTAACA 59.812 43.478 0.00 0.00 0.00 2.41
497 498 4.142600 GCGTGCTTGGAAGAAATCTAACAT 60.143 41.667 0.00 0.00 0.00 2.71
498 499 5.563842 CGTGCTTGGAAGAAATCTAACATC 58.436 41.667 0.00 0.00 0.00 3.06
499 500 5.352569 CGTGCTTGGAAGAAATCTAACATCT 59.647 40.000 0.00 0.00 0.00 2.90
500 501 6.535150 CGTGCTTGGAAGAAATCTAACATCTA 59.465 38.462 0.00 0.00 0.00 1.98
501 502 7.064609 CGTGCTTGGAAGAAATCTAACATCTAA 59.935 37.037 0.00 0.00 0.00 2.10
502 503 8.178313 GTGCTTGGAAGAAATCTAACATCTAAC 58.822 37.037 0.00 0.00 0.00 2.34
503 504 7.882791 TGCTTGGAAGAAATCTAACATCTAACA 59.117 33.333 0.00 0.00 0.00 2.41
504 505 8.897752 GCTTGGAAGAAATCTAACATCTAACAT 58.102 33.333 0.00 0.00 0.00 2.71
519 520 9.905713 AACATCTAACATATAAAGCCTCAAGAA 57.094 29.630 0.00 0.00 0.00 2.52
520 521 9.553064 ACATCTAACATATAAAGCCTCAAGAAG 57.447 33.333 0.00 0.00 0.00 2.85
521 522 9.553064 CATCTAACATATAAAGCCTCAAGAAGT 57.447 33.333 0.00 0.00 0.00 3.01
522 523 8.948631 TCTAACATATAAAGCCTCAAGAAGTG 57.051 34.615 0.00 0.00 0.00 3.16
523 524 6.442513 AACATATAAAGCCTCAAGAAGTGC 57.557 37.500 0.00 0.00 0.00 4.40
524 525 5.749462 ACATATAAAGCCTCAAGAAGTGCT 58.251 37.500 0.00 0.00 34.26 4.40
525 526 6.889198 ACATATAAAGCCTCAAGAAGTGCTA 58.111 36.000 0.00 0.00 33.01 3.49
526 527 6.989169 ACATATAAAGCCTCAAGAAGTGCTAG 59.011 38.462 0.00 0.00 33.01 3.42
527 528 2.777832 AAGCCTCAAGAAGTGCTAGG 57.222 50.000 0.00 0.00 33.01 3.02
528 529 2.774044 GCCTCAAGAAGTGCTAGGC 58.226 57.895 0.00 0.00 45.37 3.93
539 540 2.266070 TGCTAGGCACAACCAATGC 58.734 52.632 0.00 0.00 43.14 3.56
540 541 0.539207 TGCTAGGCACAACCAATGCA 60.539 50.000 0.00 0.00 45.27 3.96
541 542 0.819582 GCTAGGCACAACCAATGCAT 59.180 50.000 0.00 0.00 45.27 3.96
542 543 1.202336 GCTAGGCACAACCAATGCATC 60.202 52.381 0.00 0.00 45.27 3.91
543 544 1.064505 CTAGGCACAACCAATGCATCG 59.935 52.381 0.00 0.00 45.27 3.84
544 545 0.608856 AGGCACAACCAATGCATCGA 60.609 50.000 0.00 0.00 45.27 3.59
545 546 0.179156 GGCACAACCAATGCATCGAG 60.179 55.000 0.00 0.00 45.27 4.04
546 547 0.799534 GCACAACCAATGCATCGAGC 60.800 55.000 0.00 0.00 42.88 5.03
555 556 2.658593 GCATCGAGCGCACGGTAT 60.659 61.111 26.30 11.33 0.00 2.73
556 557 2.649257 GCATCGAGCGCACGGTATC 61.649 63.158 26.30 11.36 0.00 2.24
557 558 1.299089 CATCGAGCGCACGGTATCA 60.299 57.895 26.30 7.73 0.00 2.15
558 559 1.299165 ATCGAGCGCACGGTATCAC 60.299 57.895 26.30 0.00 0.00 3.06
559 560 2.983761 ATCGAGCGCACGGTATCACG 62.984 60.000 26.30 9.05 40.31 4.35
560 561 2.954868 GAGCGCACGGTATCACGG 60.955 66.667 11.47 0.00 38.39 4.94
561 562 4.508128 AGCGCACGGTATCACGGG 62.508 66.667 11.47 0.00 41.00 5.28
562 563 4.501714 GCGCACGGTATCACGGGA 62.502 66.667 0.30 0.00 40.35 5.14
563 564 2.278596 CGCACGGTATCACGGGAG 60.279 66.667 0.00 0.00 40.35 4.30
564 565 2.106332 GCACGGTATCACGGGAGG 59.894 66.667 0.00 0.00 40.35 4.30
565 566 2.812499 CACGGTATCACGGGAGGG 59.188 66.667 0.00 0.00 40.35 4.30
573 574 3.468552 TCACGGGAGGGAGAAAAGA 57.531 52.632 0.00 0.00 37.36 2.52
574 575 0.974383 TCACGGGAGGGAGAAAAGAC 59.026 55.000 0.00 0.00 37.36 3.01
575 576 0.036294 CACGGGAGGGAGAAAAGACC 60.036 60.000 0.00 0.00 32.31 3.85
576 577 0.473117 ACGGGAGGGAGAAAAGACCA 60.473 55.000 0.00 0.00 0.00 4.02
577 578 0.036294 CGGGAGGGAGAAAAGACCAC 60.036 60.000 0.00 0.00 0.00 4.16
578 579 0.328592 GGGAGGGAGAAAAGACCACC 59.671 60.000 0.00 0.00 0.00 4.61
579 580 1.064825 GGAGGGAGAAAAGACCACCA 58.935 55.000 0.00 0.00 0.00 4.17
580 581 1.271434 GGAGGGAGAAAAGACCACCAC 60.271 57.143 0.00 0.00 0.00 4.16
581 582 1.420138 GAGGGAGAAAAGACCACCACA 59.580 52.381 0.00 0.00 0.00 4.17
582 583 1.143073 AGGGAGAAAAGACCACCACAC 59.857 52.381 0.00 0.00 0.00 3.82
583 584 1.605753 GGAGAAAAGACCACCACACC 58.394 55.000 0.00 0.00 0.00 4.16
584 585 1.226746 GAGAAAAGACCACCACACCG 58.773 55.000 0.00 0.00 0.00 4.94
585 586 0.818040 AGAAAAGACCACCACACCGC 60.818 55.000 0.00 0.00 0.00 5.68
586 587 2.113131 GAAAAGACCACCACACCGCG 62.113 60.000 0.00 0.00 0.00 6.46
933 1011 1.048724 GTCATCCTGGATCCCACCGA 61.049 60.000 9.90 0.00 0.00 4.69
934 1012 1.048724 TCATCCTGGATCCCACCGAC 61.049 60.000 9.90 0.00 0.00 4.79
938 1016 4.340489 TGGATCCCACCGACCCCA 62.340 66.667 9.90 0.00 0.00 4.96
1101 1179 2.031163 GGAGGTGCAGCGTTGACT 59.969 61.111 10.78 0.00 0.00 3.41
1152 1230 4.662961 CTCAGCGGGTGTGCGACA 62.663 66.667 7.12 0.00 40.67 4.35
1320 1398 1.460699 GTGGAGGCCTTCCCAACTT 59.539 57.895 14.60 0.00 46.19 2.66
1433 1511 4.826556 GTGAGCTTCACCAAATACTCTCT 58.173 43.478 5.33 0.00 41.37 3.10
1434 1512 4.867608 GTGAGCTTCACCAAATACTCTCTC 59.132 45.833 5.33 0.00 41.37 3.20
1435 1513 4.774726 TGAGCTTCACCAAATACTCTCTCT 59.225 41.667 0.00 0.00 0.00 3.10
1436 1514 5.105554 TGAGCTTCACCAAATACTCTCTCTC 60.106 44.000 0.00 0.00 0.00 3.20
1437 1515 5.022787 AGCTTCACCAAATACTCTCTCTCT 58.977 41.667 0.00 0.00 0.00 3.10
1438 1516 5.127031 AGCTTCACCAAATACTCTCTCTCTC 59.873 44.000 0.00 0.00 0.00 3.20
1439 1517 5.127031 GCTTCACCAAATACTCTCTCTCTCT 59.873 44.000 0.00 0.00 0.00 3.10
1440 1518 6.680378 GCTTCACCAAATACTCTCTCTCTCTC 60.680 46.154 0.00 0.00 0.00 3.20
1441 1519 6.073447 TCACCAAATACTCTCTCTCTCTCT 57.927 41.667 0.00 0.00 0.00 3.10
1442 1520 6.119536 TCACCAAATACTCTCTCTCTCTCTC 58.880 44.000 0.00 0.00 0.00 3.20
1443 1521 6.069673 TCACCAAATACTCTCTCTCTCTCTCT 60.070 42.308 0.00 0.00 0.00 3.10
1444 1522 6.260936 CACCAAATACTCTCTCTCTCTCTCTC 59.739 46.154 0.00 0.00 0.00 3.20
1445 1523 6.158695 ACCAAATACTCTCTCTCTCTCTCTCT 59.841 42.308 0.00 0.00 0.00 3.10
1446 1524 6.708054 CCAAATACTCTCTCTCTCTCTCTCTC 59.292 46.154 0.00 0.00 0.00 3.20
1447 1525 7.419518 CCAAATACTCTCTCTCTCTCTCTCTCT 60.420 44.444 0.00 0.00 0.00 3.10
1448 1526 6.909550 ATACTCTCTCTCTCTCTCTCTCTC 57.090 45.833 0.00 0.00 0.00 3.20
1449 1527 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
1450 1528 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
1451 1529 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1452 1530 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1453 1531 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1454 1532 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1455 1533 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1466 1566 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
1604 1729 2.388735 TCTGATGATCCACTACCGCTT 58.611 47.619 0.00 0.00 0.00 4.68
1609 1734 1.003118 TGATCCACTACCGCTTTGCTT 59.997 47.619 0.00 0.00 0.00 3.91
1939 2067 3.486383 TGCCCAAAAGATTCGAAAGAGT 58.514 40.909 0.00 0.00 43.69 3.24
2151 2279 0.176910 CTCCGCCTCTTCCTCCTTTC 59.823 60.000 0.00 0.00 0.00 2.62
2156 2284 1.843206 GCCTCTTCCTCCTTTCCATCT 59.157 52.381 0.00 0.00 0.00 2.90
2277 2405 5.215160 CAACAGGAATCTGCAACTTGTTAC 58.785 41.667 8.91 0.00 44.59 2.50
2306 2434 3.507377 AACCCCAACAAGGCCCTCG 62.507 63.158 0.00 0.00 35.39 4.63
2538 2666 4.623932 TGTACAGATGCTTTCTTGAGGT 57.376 40.909 0.00 0.00 29.93 3.85
2840 2971 6.500449 ACAATCGATGTGGCTAATGGAGCT 62.500 45.833 0.00 0.00 44.13 4.09
2931 3068 6.166982 AGTGACCTTCTACTGTTCTAAATGC 58.833 40.000 0.00 0.00 0.00 3.56
2959 3096 9.465985 GTGTTCCGTTTAAAAAGAAATTCCATA 57.534 29.630 3.42 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.755469 ATGACAATGGCGGCCCAC 60.755 61.111 17.97 3.95 45.77 4.61
4 5 3.530260 CCATGACAATGGCGGCCC 61.530 66.667 17.97 0.23 46.89 5.80
11 12 2.094906 CAGTGTGAAGCCCATGACAATG 60.095 50.000 0.00 0.00 0.00 2.82
12 13 2.165167 CAGTGTGAAGCCCATGACAAT 58.835 47.619 0.00 0.00 0.00 2.71
13 14 1.133823 ACAGTGTGAAGCCCATGACAA 60.134 47.619 0.00 0.00 0.00 3.18
14 15 0.473755 ACAGTGTGAAGCCCATGACA 59.526 50.000 0.00 0.00 0.00 3.58
15 16 2.076863 GTACAGTGTGAAGCCCATGAC 58.923 52.381 5.88 0.00 0.00 3.06
16 17 1.977854 AGTACAGTGTGAAGCCCATGA 59.022 47.619 5.88 0.00 0.00 3.07
17 18 2.479566 AGTACAGTGTGAAGCCCATG 57.520 50.000 5.88 0.00 0.00 3.66
18 19 3.508845 AAAGTACAGTGTGAAGCCCAT 57.491 42.857 5.88 0.00 0.00 4.00
19 20 3.290948 AAAAGTACAGTGTGAAGCCCA 57.709 42.857 5.88 0.00 0.00 5.36
47 48 9.865321 GGCTGTCGGATATGTACTATAAAAATA 57.135 33.333 0.00 0.00 0.00 1.40
48 49 8.372459 TGGCTGTCGGATATGTACTATAAAAAT 58.628 33.333 0.00 0.00 0.00 1.82
49 50 7.728148 TGGCTGTCGGATATGTACTATAAAAA 58.272 34.615 0.00 0.00 0.00 1.94
50 51 7.292713 TGGCTGTCGGATATGTACTATAAAA 57.707 36.000 0.00 0.00 0.00 1.52
51 52 6.071560 CCTGGCTGTCGGATATGTACTATAAA 60.072 42.308 0.00 0.00 0.00 1.40
52 53 5.417894 CCTGGCTGTCGGATATGTACTATAA 59.582 44.000 0.00 0.00 0.00 0.98
53 54 4.948004 CCTGGCTGTCGGATATGTACTATA 59.052 45.833 0.00 0.00 0.00 1.31
54 55 3.764434 CCTGGCTGTCGGATATGTACTAT 59.236 47.826 0.00 0.00 0.00 2.12
55 56 3.154710 CCTGGCTGTCGGATATGTACTA 58.845 50.000 0.00 0.00 0.00 1.82
56 57 1.964223 CCTGGCTGTCGGATATGTACT 59.036 52.381 0.00 0.00 0.00 2.73
57 58 1.605712 GCCTGGCTGTCGGATATGTAC 60.606 57.143 12.43 0.00 0.00 2.90
58 59 0.679505 GCCTGGCTGTCGGATATGTA 59.320 55.000 12.43 0.00 0.00 2.29
59 60 1.050988 AGCCTGGCTGTCGGATATGT 61.051 55.000 22.71 0.00 37.57 2.29
60 61 0.107456 AAGCCTGGCTGTCGGATATG 59.893 55.000 24.16 0.00 39.62 1.78
61 62 0.394565 GAAGCCTGGCTGTCGGATAT 59.605 55.000 24.16 2.92 39.62 1.63
62 63 0.975556 TGAAGCCTGGCTGTCGGATA 60.976 55.000 24.16 3.60 39.62 2.59
63 64 2.293318 TGAAGCCTGGCTGTCGGAT 61.293 57.895 24.16 4.70 39.62 4.18
64 65 2.922503 TGAAGCCTGGCTGTCGGA 60.923 61.111 24.16 4.61 39.62 4.55
65 66 2.743928 GTGAAGCCTGGCTGTCGG 60.744 66.667 24.16 0.00 39.62 4.79
66 67 3.114616 CGTGAAGCCTGGCTGTCG 61.115 66.667 24.16 21.42 39.62 4.35
67 68 0.884704 TTTCGTGAAGCCTGGCTGTC 60.885 55.000 24.16 20.38 39.62 3.51
68 69 1.148273 TTTCGTGAAGCCTGGCTGT 59.852 52.632 24.16 12.47 39.62 4.40
69 70 1.165907 TGTTTCGTGAAGCCTGGCTG 61.166 55.000 24.16 9.87 39.62 4.85
70 71 0.886490 CTGTTTCGTGAAGCCTGGCT 60.886 55.000 17.22 17.22 42.56 4.75
71 72 1.576421 CTGTTTCGTGAAGCCTGGC 59.424 57.895 11.65 11.65 0.00 4.85
72 73 0.535102 ACCTGTTTCGTGAAGCCTGG 60.535 55.000 0.00 0.00 0.00 4.45
73 74 0.868406 GACCTGTTTCGTGAAGCCTG 59.132 55.000 0.00 0.00 0.00 4.85
74 75 0.468226 TGACCTGTTTCGTGAAGCCT 59.532 50.000 0.00 0.00 0.00 4.58
75 76 0.586802 GTGACCTGTTTCGTGAAGCC 59.413 55.000 0.00 0.00 0.00 4.35
76 77 0.586802 GGTGACCTGTTTCGTGAAGC 59.413 55.000 0.00 0.00 0.00 3.86
77 78 1.948104 TGGTGACCTGTTTCGTGAAG 58.052 50.000 2.11 0.00 0.00 3.02
78 79 2.011222 GTTGGTGACCTGTTTCGTGAA 58.989 47.619 2.11 0.00 0.00 3.18
79 80 1.208535 AGTTGGTGACCTGTTTCGTGA 59.791 47.619 2.11 0.00 0.00 4.35
80 81 1.663695 AGTTGGTGACCTGTTTCGTG 58.336 50.000 2.11 0.00 0.00 4.35
81 82 2.285977 GAAGTTGGTGACCTGTTTCGT 58.714 47.619 2.11 0.00 0.00 3.85
82 83 2.285083 TGAAGTTGGTGACCTGTTTCG 58.715 47.619 2.11 0.00 0.00 3.46
83 84 3.004734 CCATGAAGTTGGTGACCTGTTTC 59.995 47.826 2.11 4.53 31.74 2.78
84 85 2.958355 CCATGAAGTTGGTGACCTGTTT 59.042 45.455 2.11 0.00 31.74 2.83
85 86 2.586425 CCATGAAGTTGGTGACCTGTT 58.414 47.619 2.11 0.00 31.74 3.16
86 87 2.276732 CCATGAAGTTGGTGACCTGT 57.723 50.000 2.11 0.00 31.74 4.00
94 95 1.946768 ACGAACACACCATGAAGTTGG 59.053 47.619 0.00 0.00 42.82 3.77
95 96 2.286950 CCACGAACACACCATGAAGTTG 60.287 50.000 0.00 0.00 0.00 3.16
96 97 1.946768 CCACGAACACACCATGAAGTT 59.053 47.619 0.00 0.00 0.00 2.66
97 98 1.593196 CCACGAACACACCATGAAGT 58.407 50.000 0.00 0.00 0.00 3.01
98 99 0.238289 GCCACGAACACACCATGAAG 59.762 55.000 0.00 0.00 0.00 3.02
99 100 0.179032 AGCCACGAACACACCATGAA 60.179 50.000 0.00 0.00 0.00 2.57
100 101 0.179032 AAGCCACGAACACACCATGA 60.179 50.000 0.00 0.00 0.00 3.07
101 102 0.667993 AAAGCCACGAACACACCATG 59.332 50.000 0.00 0.00 0.00 3.66
102 103 1.336755 GAAAAGCCACGAACACACCAT 59.663 47.619 0.00 0.00 0.00 3.55
103 104 0.736053 GAAAAGCCACGAACACACCA 59.264 50.000 0.00 0.00 0.00 4.17
104 105 1.021968 AGAAAAGCCACGAACACACC 58.978 50.000 0.00 0.00 0.00 4.16
105 106 2.223377 CCTAGAAAAGCCACGAACACAC 59.777 50.000 0.00 0.00 0.00 3.82
106 107 2.103432 TCCTAGAAAAGCCACGAACACA 59.897 45.455 0.00 0.00 0.00 3.72
107 108 2.762745 TCCTAGAAAAGCCACGAACAC 58.237 47.619 0.00 0.00 0.00 3.32
108 109 3.135994 GTTCCTAGAAAAGCCACGAACA 58.864 45.455 0.00 0.00 0.00 3.18
109 110 3.135994 TGTTCCTAGAAAAGCCACGAAC 58.864 45.455 0.00 0.00 0.00 3.95
110 111 3.478857 TGTTCCTAGAAAAGCCACGAA 57.521 42.857 0.00 0.00 0.00 3.85
111 112 3.596214 GATGTTCCTAGAAAAGCCACGA 58.404 45.455 0.00 0.00 0.00 4.35
112 113 2.678336 GGATGTTCCTAGAAAAGCCACG 59.322 50.000 0.00 0.00 32.53 4.94
113 114 3.686016 TGGATGTTCCTAGAAAAGCCAC 58.314 45.455 0.32 0.00 37.46 5.01
114 115 4.591321 ATGGATGTTCCTAGAAAAGCCA 57.409 40.909 6.94 6.94 37.46 4.75
115 116 7.588497 AAATATGGATGTTCCTAGAAAAGCC 57.412 36.000 0.00 0.00 37.46 4.35
116 117 9.952188 GTAAAATATGGATGTTCCTAGAAAAGC 57.048 33.333 0.00 0.00 37.46 3.51
125 126 9.899226 GCTTAATCAGTAAAATATGGATGTTCC 57.101 33.333 0.00 0.00 36.96 3.62
148 149 9.023962 TGGAGATTTTATATGACTTTGTTGCTT 57.976 29.630 0.00 0.00 0.00 3.91
149 150 8.579850 TGGAGATTTTATATGACTTTGTTGCT 57.420 30.769 0.00 0.00 0.00 3.91
164 165 9.547753 GCTCTGAAGTGTATTATGGAGATTTTA 57.452 33.333 0.00 0.00 0.00 1.52
165 166 8.049117 TGCTCTGAAGTGTATTATGGAGATTTT 58.951 33.333 0.00 0.00 0.00 1.82
166 167 7.568349 TGCTCTGAAGTGTATTATGGAGATTT 58.432 34.615 0.00 0.00 0.00 2.17
167 168 7.129457 TGCTCTGAAGTGTATTATGGAGATT 57.871 36.000 0.00 0.00 0.00 2.40
168 169 6.737720 TGCTCTGAAGTGTATTATGGAGAT 57.262 37.500 0.00 0.00 0.00 2.75
169 170 6.737720 ATGCTCTGAAGTGTATTATGGAGA 57.262 37.500 0.00 0.00 0.00 3.71
170 171 8.933807 CATTATGCTCTGAAGTGTATTATGGAG 58.066 37.037 0.00 0.00 0.00 3.86
171 172 8.650490 TCATTATGCTCTGAAGTGTATTATGGA 58.350 33.333 8.52 0.00 28.88 3.41
172 173 8.837788 TCATTATGCTCTGAAGTGTATTATGG 57.162 34.615 8.52 0.00 28.88 2.74
176 177 9.236006 ACTTTTCATTATGCTCTGAAGTGTATT 57.764 29.630 0.00 0.00 33.25 1.89
177 178 8.798859 ACTTTTCATTATGCTCTGAAGTGTAT 57.201 30.769 0.00 0.00 33.25 2.29
178 179 9.151471 GTACTTTTCATTATGCTCTGAAGTGTA 57.849 33.333 0.00 0.00 33.25 2.90
179 180 7.661437 TGTACTTTTCATTATGCTCTGAAGTGT 59.339 33.333 0.00 0.00 33.25 3.55
180 181 8.032952 TGTACTTTTCATTATGCTCTGAAGTG 57.967 34.615 0.00 0.00 33.25 3.16
181 182 8.671921 CATGTACTTTTCATTATGCTCTGAAGT 58.328 33.333 0.00 0.00 33.25 3.01
182 183 8.886719 TCATGTACTTTTCATTATGCTCTGAAG 58.113 33.333 0.00 0.00 33.25 3.02
183 184 8.791327 TCATGTACTTTTCATTATGCTCTGAA 57.209 30.769 0.00 0.00 0.00 3.02
184 185 8.969260 ATCATGTACTTTTCATTATGCTCTGA 57.031 30.769 0.00 0.00 0.00 3.27
185 186 9.447040 CAATCATGTACTTTTCATTATGCTCTG 57.553 33.333 0.00 0.00 0.00 3.35
186 187 9.399797 TCAATCATGTACTTTTCATTATGCTCT 57.600 29.630 0.00 0.00 0.00 4.09
187 188 9.443283 GTCAATCATGTACTTTTCATTATGCTC 57.557 33.333 0.00 0.00 0.00 4.26
188 189 9.182214 AGTCAATCATGTACTTTTCATTATGCT 57.818 29.630 0.00 0.00 0.00 3.79
189 190 9.229784 CAGTCAATCATGTACTTTTCATTATGC 57.770 33.333 0.00 0.00 0.00 3.14
193 194 8.849168 TGTTCAGTCAATCATGTACTTTTCATT 58.151 29.630 0.00 0.00 0.00 2.57
194 195 8.292448 GTGTTCAGTCAATCATGTACTTTTCAT 58.708 33.333 0.00 0.00 0.00 2.57
195 196 7.255104 GGTGTTCAGTCAATCATGTACTTTTCA 60.255 37.037 0.00 0.00 0.00 2.69
196 197 7.041098 AGGTGTTCAGTCAATCATGTACTTTTC 60.041 37.037 0.00 0.00 0.00 2.29
197 198 6.772716 AGGTGTTCAGTCAATCATGTACTTTT 59.227 34.615 0.00 0.00 0.00 2.27
198 199 6.299141 AGGTGTTCAGTCAATCATGTACTTT 58.701 36.000 0.00 0.00 0.00 2.66
199 200 5.869579 AGGTGTTCAGTCAATCATGTACTT 58.130 37.500 0.00 0.00 0.00 2.24
200 201 5.489792 AGGTGTTCAGTCAATCATGTACT 57.510 39.130 0.00 0.00 0.00 2.73
201 202 6.163476 TGTAGGTGTTCAGTCAATCATGTAC 58.837 40.000 0.00 0.00 0.00 2.90
202 203 6.353404 TGTAGGTGTTCAGTCAATCATGTA 57.647 37.500 0.00 0.00 0.00 2.29
203 204 5.227569 TGTAGGTGTTCAGTCAATCATGT 57.772 39.130 0.00 0.00 0.00 3.21
204 205 4.633126 CCTGTAGGTGTTCAGTCAATCATG 59.367 45.833 0.00 0.00 0.00 3.07
205 206 4.532126 TCCTGTAGGTGTTCAGTCAATCAT 59.468 41.667 0.00 0.00 36.34 2.45
206 207 3.901222 TCCTGTAGGTGTTCAGTCAATCA 59.099 43.478 0.00 0.00 36.34 2.57
207 208 4.021016 AGTCCTGTAGGTGTTCAGTCAATC 60.021 45.833 0.00 0.00 36.34 2.67
208 209 3.904339 AGTCCTGTAGGTGTTCAGTCAAT 59.096 43.478 0.00 0.00 36.34 2.57
209 210 3.305720 AGTCCTGTAGGTGTTCAGTCAA 58.694 45.455 0.00 0.00 36.34 3.18
210 211 2.958818 AGTCCTGTAGGTGTTCAGTCA 58.041 47.619 0.00 0.00 36.34 3.41
211 212 3.555168 CCAAGTCCTGTAGGTGTTCAGTC 60.555 52.174 0.00 0.00 36.34 3.51
212 213 2.368875 CCAAGTCCTGTAGGTGTTCAGT 59.631 50.000 0.00 0.00 36.34 3.41
213 214 2.872038 GCCAAGTCCTGTAGGTGTTCAG 60.872 54.545 0.00 0.00 36.34 3.02
214 215 1.071699 GCCAAGTCCTGTAGGTGTTCA 59.928 52.381 0.00 0.00 36.34 3.18
215 216 1.348036 AGCCAAGTCCTGTAGGTGTTC 59.652 52.381 0.00 0.00 36.34 3.18
216 217 1.435256 AGCCAAGTCCTGTAGGTGTT 58.565 50.000 0.00 0.00 36.34 3.32
217 218 2.320681 TAGCCAAGTCCTGTAGGTGT 57.679 50.000 0.00 0.00 36.34 4.16
218 219 3.695830 TTTAGCCAAGTCCTGTAGGTG 57.304 47.619 0.00 0.00 36.34 4.00
219 220 3.651423 AGTTTTAGCCAAGTCCTGTAGGT 59.349 43.478 0.00 0.00 36.34 3.08
220 221 4.287766 AGTTTTAGCCAAGTCCTGTAGG 57.712 45.455 0.00 0.00 0.00 3.18
221 222 5.351740 GCTAAGTTTTAGCCAAGTCCTGTAG 59.648 44.000 9.17 0.00 34.65 2.74
222 223 5.243207 GCTAAGTTTTAGCCAAGTCCTGTA 58.757 41.667 9.17 0.00 34.65 2.74
223 224 4.072839 GCTAAGTTTTAGCCAAGTCCTGT 58.927 43.478 9.17 0.00 34.65 4.00
224 225 4.686839 GCTAAGTTTTAGCCAAGTCCTG 57.313 45.455 9.17 0.00 34.65 3.86
233 234 1.925185 CGTCGAGGGCTAAGTTTTAGC 59.075 52.381 11.40 11.40 39.70 3.09
234 235 2.094338 ACCGTCGAGGGCTAAGTTTTAG 60.094 50.000 23.64 0.00 46.96 1.85
235 236 1.895131 ACCGTCGAGGGCTAAGTTTTA 59.105 47.619 23.64 0.00 46.96 1.52
236 237 0.683412 ACCGTCGAGGGCTAAGTTTT 59.317 50.000 23.64 0.00 46.96 2.43
237 238 2.359088 ACCGTCGAGGGCTAAGTTT 58.641 52.632 23.64 0.00 46.96 2.66
238 239 4.108673 ACCGTCGAGGGCTAAGTT 57.891 55.556 23.64 0.11 46.96 2.66
245 246 1.443872 CGAAACAGACCGTCGAGGG 60.444 63.158 22.23 22.23 46.96 4.30
246 247 0.728466 GTCGAAACAGACCGTCGAGG 60.728 60.000 0.00 0.00 43.85 4.63
247 248 0.237761 AGTCGAAACAGACCGTCGAG 59.762 55.000 0.00 0.00 43.85 4.04
248 249 0.236711 GAGTCGAAACAGACCGTCGA 59.763 55.000 0.00 0.00 41.83 4.20
249 250 0.040692 TGAGTCGAAACAGACCGTCG 60.041 55.000 0.00 0.00 41.83 5.12
250 251 1.687628 CTGAGTCGAAACAGACCGTC 58.312 55.000 12.81 0.00 41.83 4.79
251 252 0.318784 GCTGAGTCGAAACAGACCGT 60.319 55.000 19.67 0.00 41.83 4.83
252 253 0.039074 AGCTGAGTCGAAACAGACCG 60.039 55.000 19.67 0.00 41.83 4.79
253 254 2.156343 AAGCTGAGTCGAAACAGACC 57.844 50.000 19.67 6.86 41.83 3.85
254 255 4.383351 GTCTTAAGCTGAGTCGAAACAGAC 59.617 45.833 19.67 12.52 41.23 3.51
255 256 4.547532 GTCTTAAGCTGAGTCGAAACAGA 58.452 43.478 19.67 1.46 36.38 3.41
256 257 3.675698 GGTCTTAAGCTGAGTCGAAACAG 59.324 47.826 13.52 13.52 37.22 3.16
257 258 3.650139 GGTCTTAAGCTGAGTCGAAACA 58.350 45.455 0.00 0.00 0.00 2.83
258 259 2.662156 CGGTCTTAAGCTGAGTCGAAAC 59.338 50.000 0.00 0.00 0.00 2.78
259 260 2.352421 CCGGTCTTAAGCTGAGTCGAAA 60.352 50.000 0.00 0.00 0.00 3.46
260 261 1.201647 CCGGTCTTAAGCTGAGTCGAA 59.798 52.381 0.00 0.00 0.00 3.71
261 262 0.809385 CCGGTCTTAAGCTGAGTCGA 59.191 55.000 0.00 0.00 0.00 4.20
262 263 0.809385 TCCGGTCTTAAGCTGAGTCG 59.191 55.000 0.00 0.00 0.00 4.18
263 264 1.544691 TGTCCGGTCTTAAGCTGAGTC 59.455 52.381 0.00 0.00 0.00 3.36
264 265 1.629043 TGTCCGGTCTTAAGCTGAGT 58.371 50.000 0.00 0.00 0.00 3.41
265 266 2.093973 ACATGTCCGGTCTTAAGCTGAG 60.094 50.000 0.00 0.00 0.00 3.35
266 267 1.899814 ACATGTCCGGTCTTAAGCTGA 59.100 47.619 0.00 0.00 0.00 4.26
267 268 2.002586 CACATGTCCGGTCTTAAGCTG 58.997 52.381 0.00 0.00 0.00 4.24
268 269 1.623811 ACACATGTCCGGTCTTAAGCT 59.376 47.619 0.00 0.00 0.00 3.74
269 270 2.000447 GACACATGTCCGGTCTTAAGC 59.000 52.381 0.00 0.00 39.07 3.09
270 271 3.594603 AGACACATGTCCGGTCTTAAG 57.405 47.619 10.66 0.00 45.85 1.85
274 275 0.243907 CGAAGACACATGTCCGGTCT 59.756 55.000 10.66 10.66 45.85 3.85
275 276 0.038526 ACGAAGACACATGTCCGGTC 60.039 55.000 8.41 0.34 45.85 4.79
276 277 0.391597 AACGAAGACACATGTCCGGT 59.608 50.000 8.41 2.14 45.85 5.28
277 278 2.357327 TAACGAAGACACATGTCCGG 57.643 50.000 8.41 0.00 45.85 5.14
278 279 3.507786 TCATAACGAAGACACATGTCCG 58.492 45.455 8.41 8.47 45.85 4.79
279 280 5.856126 TTTCATAACGAAGACACATGTCC 57.144 39.130 8.41 0.00 45.85 4.02
304 305 9.833917 AGTAGTTCTTGTTTTAGCTAAGTCTTT 57.166 29.630 6.24 0.00 0.00 2.52
305 306 9.833917 AAGTAGTTCTTGTTTTAGCTAAGTCTT 57.166 29.630 6.24 0.00 34.77 3.01
306 307 9.478768 GAAGTAGTTCTTGTTTTAGCTAAGTCT 57.521 33.333 6.24 3.36 36.40 3.24
307 308 8.710551 GGAAGTAGTTCTTGTTTTAGCTAAGTC 58.289 37.037 6.24 4.85 36.40 3.01
308 309 8.430431 AGGAAGTAGTTCTTGTTTTAGCTAAGT 58.570 33.333 6.24 0.00 36.40 2.24
309 310 8.834749 AGGAAGTAGTTCTTGTTTTAGCTAAG 57.165 34.615 6.24 0.00 36.40 2.18
310 311 7.876582 GGAGGAAGTAGTTCTTGTTTTAGCTAA 59.123 37.037 10.10 0.86 36.40 3.09
311 312 7.384477 GGAGGAAGTAGTTCTTGTTTTAGCTA 58.616 38.462 10.10 0.00 36.40 3.32
312 313 6.231951 GGAGGAAGTAGTTCTTGTTTTAGCT 58.768 40.000 10.10 0.00 36.40 3.32
313 314 5.120363 CGGAGGAAGTAGTTCTTGTTTTAGC 59.880 44.000 10.10 0.00 36.40 3.09
314 315 6.221659 ACGGAGGAAGTAGTTCTTGTTTTAG 58.778 40.000 10.10 0.00 36.40 1.85
315 316 6.165700 ACGGAGGAAGTAGTTCTTGTTTTA 57.834 37.500 10.10 0.00 36.40 1.52
316 317 5.032327 ACGGAGGAAGTAGTTCTTGTTTT 57.968 39.130 10.10 0.00 36.40 2.43
317 318 4.502777 GGACGGAGGAAGTAGTTCTTGTTT 60.503 45.833 10.10 0.00 36.40 2.83
318 319 3.006644 GGACGGAGGAAGTAGTTCTTGTT 59.993 47.826 10.10 0.00 36.40 2.83
319 320 2.561858 GGACGGAGGAAGTAGTTCTTGT 59.438 50.000 10.10 4.11 36.40 3.16
320 321 2.415625 CGGACGGAGGAAGTAGTTCTTG 60.416 54.545 10.10 1.22 36.40 3.02
321 322 1.817447 CGGACGGAGGAAGTAGTTCTT 59.183 52.381 10.10 2.20 39.32 2.52
322 323 1.461559 CGGACGGAGGAAGTAGTTCT 58.538 55.000 10.10 0.00 32.72 3.01
323 324 0.455005 CCGGACGGAGGAAGTAGTTC 59.545 60.000 4.40 1.31 37.50 3.01
324 325 0.038744 TCCGGACGGAGGAAGTAGTT 59.961 55.000 9.76 0.00 39.76 2.24
325 326 0.038744 TTCCGGACGGAGGAAGTAGT 59.961 55.000 13.64 0.00 46.06 2.73
326 327 2.877975 TTCCGGACGGAGGAAGTAG 58.122 57.895 13.64 0.00 46.06 2.57
330 331 0.616679 AGGATTTCCGGACGGAGGAA 60.617 55.000 13.64 6.93 46.06 3.36
331 332 0.616679 AAGGATTTCCGGACGGAGGA 60.617 55.000 13.64 7.39 46.06 3.71
332 333 0.462047 CAAGGATTTCCGGACGGAGG 60.462 60.000 13.64 0.00 46.06 4.30
333 334 0.249398 ACAAGGATTTCCGGACGGAG 59.751 55.000 13.64 3.15 46.06 4.63
334 335 0.248289 GACAAGGATTTCCGGACGGA 59.752 55.000 1.83 9.76 43.52 4.69
335 336 0.036765 TGACAAGGATTTCCGGACGG 60.037 55.000 1.83 3.96 42.08 4.79
336 337 1.933853 GATGACAAGGATTTCCGGACG 59.066 52.381 1.83 0.00 42.08 4.79
337 338 2.985896 TGATGACAAGGATTTCCGGAC 58.014 47.619 1.83 0.00 42.08 4.79
338 339 3.712016 TTGATGACAAGGATTTCCGGA 57.288 42.857 0.00 0.00 42.08 5.14
339 340 4.782019 TTTTGATGACAAGGATTTCCGG 57.218 40.909 0.00 0.00 42.08 5.14
340 341 5.953183 TCATTTTGATGACAAGGATTTCCG 58.047 37.500 0.00 0.00 42.08 4.30
341 342 9.874205 TTATTCATTTTGATGACAAGGATTTCC 57.126 29.630 0.00 0.00 37.32 3.13
351 352 9.962759 GCATCACTTTTTATTCATTTTGATGAC 57.037 29.630 11.44 1.22 40.95 3.06
352 353 9.708092 TGCATCACTTTTTATTCATTTTGATGA 57.292 25.926 11.44 0.00 40.95 2.92
355 356 9.932207 AGATGCATCACTTTTTATTCATTTTGA 57.068 25.926 27.81 0.00 0.00 2.69
361 362 9.399797 ACATCTAGATGCATCACTTTTTATTCA 57.600 29.630 28.86 0.00 42.39 2.57
407 408 9.381033 ACTTGTCATCAAAATGAACAAAAATGA 57.619 25.926 0.87 0.00 43.42 2.57
408 409 9.991388 AACTTGTCATCAAAATGAACAAAAATG 57.009 25.926 0.87 0.00 43.42 2.32
434 435 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
435 436 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
436 437 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
437 438 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
438 439 0.179000 GTAGTACTCCCTCCGTCCGA 59.821 60.000 0.00 0.00 0.00 4.55
439 440 0.107508 TGTAGTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
440 441 2.361643 ATGTAGTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
441 442 4.277921 CCTTAATGTAGTACTCCCTCCGTC 59.722 50.000 0.00 0.00 0.00 4.79
442 443 4.213513 CCTTAATGTAGTACTCCCTCCGT 58.786 47.826 0.00 0.00 0.00 4.69
443 444 4.213513 ACCTTAATGTAGTACTCCCTCCG 58.786 47.826 0.00 0.00 0.00 4.63
444 445 5.456779 AGACCTTAATGTAGTACTCCCTCC 58.543 45.833 0.00 0.00 0.00 4.30
445 446 6.606395 TCAAGACCTTAATGTAGTACTCCCTC 59.394 42.308 0.00 0.00 0.00 4.30
446 447 6.500336 TCAAGACCTTAATGTAGTACTCCCT 58.500 40.000 0.00 0.00 0.00 4.20
447 448 6.786967 TCAAGACCTTAATGTAGTACTCCC 57.213 41.667 0.00 0.00 0.00 4.30
448 449 8.008513 TCATCAAGACCTTAATGTAGTACTCC 57.991 38.462 0.00 0.00 0.00 3.85
449 450 7.650104 GCTCATCAAGACCTTAATGTAGTACTC 59.350 40.741 0.00 0.00 0.00 2.59
450 451 7.493367 GCTCATCAAGACCTTAATGTAGTACT 58.507 38.462 0.00 0.00 0.00 2.73
451 452 6.418226 CGCTCATCAAGACCTTAATGTAGTAC 59.582 42.308 0.00 0.00 0.00 2.73
452 453 6.096423 ACGCTCATCAAGACCTTAATGTAGTA 59.904 38.462 0.00 0.00 0.00 1.82
453 454 5.105310 ACGCTCATCAAGACCTTAATGTAGT 60.105 40.000 0.00 0.00 0.00 2.73
454 455 5.233050 CACGCTCATCAAGACCTTAATGTAG 59.767 44.000 0.00 0.00 0.00 2.74
455 456 5.109210 CACGCTCATCAAGACCTTAATGTA 58.891 41.667 0.00 0.00 0.00 2.29
456 457 3.935203 CACGCTCATCAAGACCTTAATGT 59.065 43.478 0.00 0.00 0.00 2.71
457 458 3.242543 GCACGCTCATCAAGACCTTAATG 60.243 47.826 0.00 0.00 0.00 1.90
458 459 2.939103 GCACGCTCATCAAGACCTTAAT 59.061 45.455 0.00 0.00 0.00 1.40
459 460 2.028112 AGCACGCTCATCAAGACCTTAA 60.028 45.455 0.00 0.00 0.00 1.85
460 461 1.550524 AGCACGCTCATCAAGACCTTA 59.449 47.619 0.00 0.00 0.00 2.69
461 462 0.322975 AGCACGCTCATCAAGACCTT 59.677 50.000 0.00 0.00 0.00 3.50
462 463 0.322975 AAGCACGCTCATCAAGACCT 59.677 50.000 0.00 0.00 0.00 3.85
463 464 0.445436 CAAGCACGCTCATCAAGACC 59.555 55.000 0.00 0.00 0.00 3.85
464 465 0.445436 CCAAGCACGCTCATCAAGAC 59.555 55.000 0.00 0.00 0.00 3.01
465 466 0.321346 TCCAAGCACGCTCATCAAGA 59.679 50.000 0.00 0.00 0.00 3.02
466 467 1.129998 CTTCCAAGCACGCTCATCAAG 59.870 52.381 0.00 0.00 0.00 3.02
467 468 1.159285 CTTCCAAGCACGCTCATCAA 58.841 50.000 0.00 0.00 0.00 2.57
468 469 0.321346 TCTTCCAAGCACGCTCATCA 59.679 50.000 0.00 0.00 0.00 3.07
469 470 1.442769 TTCTTCCAAGCACGCTCATC 58.557 50.000 0.00 0.00 0.00 2.92
470 471 1.896220 TTTCTTCCAAGCACGCTCAT 58.104 45.000 0.00 0.00 0.00 2.90
471 472 1.806542 GATTTCTTCCAAGCACGCTCA 59.193 47.619 0.00 0.00 0.00 4.26
472 473 2.079925 AGATTTCTTCCAAGCACGCTC 58.920 47.619 0.00 0.00 0.00 5.03
473 474 2.191128 AGATTTCTTCCAAGCACGCT 57.809 45.000 0.00 0.00 0.00 5.07
474 475 3.188460 TGTTAGATTTCTTCCAAGCACGC 59.812 43.478 0.00 0.00 0.00 5.34
475 476 5.352569 AGATGTTAGATTTCTTCCAAGCACG 59.647 40.000 0.00 0.00 0.00 5.34
476 477 6.749923 AGATGTTAGATTTCTTCCAAGCAC 57.250 37.500 0.00 0.00 0.00 4.40
477 478 7.882791 TGTTAGATGTTAGATTTCTTCCAAGCA 59.117 33.333 0.00 0.00 0.00 3.91
478 479 8.268850 TGTTAGATGTTAGATTTCTTCCAAGC 57.731 34.615 0.00 0.00 0.00 4.01
493 494 9.905713 TTCTTGAGGCTTTATATGTTAGATGTT 57.094 29.630 0.00 0.00 0.00 2.71
494 495 9.553064 CTTCTTGAGGCTTTATATGTTAGATGT 57.447 33.333 0.00 0.00 0.00 3.06
495 496 9.553064 ACTTCTTGAGGCTTTATATGTTAGATG 57.447 33.333 0.00 0.00 0.00 2.90
496 497 9.553064 CACTTCTTGAGGCTTTATATGTTAGAT 57.447 33.333 0.00 0.00 0.00 1.98
497 498 7.495934 GCACTTCTTGAGGCTTTATATGTTAGA 59.504 37.037 0.00 0.00 0.00 2.10
498 499 7.497249 AGCACTTCTTGAGGCTTTATATGTTAG 59.503 37.037 0.00 0.00 30.68 2.34
499 500 7.338710 AGCACTTCTTGAGGCTTTATATGTTA 58.661 34.615 0.00 0.00 30.68 2.41
500 501 6.183347 AGCACTTCTTGAGGCTTTATATGTT 58.817 36.000 0.00 0.00 30.68 2.71
501 502 5.749462 AGCACTTCTTGAGGCTTTATATGT 58.251 37.500 0.00 0.00 30.68 2.29
502 503 6.426328 CCTAGCACTTCTTGAGGCTTTATATG 59.574 42.308 0.00 0.00 34.84 1.78
503 504 6.529220 CCTAGCACTTCTTGAGGCTTTATAT 58.471 40.000 0.00 0.00 34.84 0.86
504 505 5.918608 CCTAGCACTTCTTGAGGCTTTATA 58.081 41.667 0.00 0.00 34.84 0.98
505 506 4.775236 CCTAGCACTTCTTGAGGCTTTAT 58.225 43.478 0.00 0.00 34.84 1.40
506 507 4.207891 CCTAGCACTTCTTGAGGCTTTA 57.792 45.455 0.00 0.00 34.84 1.85
507 508 3.064900 CCTAGCACTTCTTGAGGCTTT 57.935 47.619 0.00 0.00 34.84 3.51
508 509 2.777832 CCTAGCACTTCTTGAGGCTT 57.222 50.000 0.00 0.00 34.84 4.35
510 511 2.774044 GCCTAGCACTTCTTGAGGC 58.226 57.895 0.00 0.00 45.48 4.70
521 522 0.539207 TGCATTGGTTGTGCCTAGCA 60.539 50.000 0.00 0.00 41.83 3.49
522 523 0.819582 ATGCATTGGTTGTGCCTAGC 59.180 50.000 0.00 0.00 41.83 3.42
523 524 1.064505 CGATGCATTGGTTGTGCCTAG 59.935 52.381 5.98 0.00 41.83 3.02
524 525 1.093972 CGATGCATTGGTTGTGCCTA 58.906 50.000 5.98 0.00 41.83 3.93
525 526 0.608856 TCGATGCATTGGTTGTGCCT 60.609 50.000 14.12 0.00 41.83 4.75
526 527 0.179156 CTCGATGCATTGGTTGTGCC 60.179 55.000 14.12 0.00 41.83 5.01
527 528 0.799534 GCTCGATGCATTGGTTGTGC 60.800 55.000 14.12 7.39 42.31 4.57
528 529 0.521867 CGCTCGATGCATTGGTTGTG 60.522 55.000 14.12 7.66 43.06 3.33
529 530 1.796151 CGCTCGATGCATTGGTTGT 59.204 52.632 14.12 0.00 43.06 3.32
530 531 1.584483 GCGCTCGATGCATTGGTTG 60.584 57.895 14.12 6.19 43.06 3.77
531 532 2.039974 TGCGCTCGATGCATTGGTT 61.040 52.632 14.12 0.00 43.06 3.67
532 533 2.436469 TGCGCTCGATGCATTGGT 60.436 55.556 14.12 0.00 43.06 3.67
533 534 2.023741 GTGCGCTCGATGCATTGG 59.976 61.111 14.12 6.12 45.34 3.16
534 535 2.350425 CGTGCGCTCGATGCATTG 60.350 61.111 26.26 7.70 45.34 2.82
535 536 2.899345 TACCGTGCGCTCGATGCATT 62.899 55.000 31.12 11.28 45.34 3.56
536 537 2.699576 ATACCGTGCGCTCGATGCAT 62.700 55.000 31.12 15.43 45.34 3.96
537 538 3.424639 ATACCGTGCGCTCGATGCA 62.425 57.895 31.12 13.94 43.06 3.96
538 539 2.649257 GATACCGTGCGCTCGATGC 61.649 63.158 31.12 14.29 38.57 3.91
539 540 1.299089 TGATACCGTGCGCTCGATG 60.299 57.895 31.12 18.37 0.00 3.84
540 541 1.299165 GTGATACCGTGCGCTCGAT 60.299 57.895 31.12 19.19 0.00 3.59
541 542 2.101575 GTGATACCGTGCGCTCGA 59.898 61.111 31.12 14.27 0.00 4.04
542 543 3.312504 CGTGATACCGTGCGCTCG 61.313 66.667 23.83 23.83 0.00 5.03
543 544 2.954868 CCGTGATACCGTGCGCTC 60.955 66.667 9.73 3.51 0.00 5.03
544 545 4.508128 CCCGTGATACCGTGCGCT 62.508 66.667 9.73 0.00 0.00 5.92
545 546 4.501714 TCCCGTGATACCGTGCGC 62.502 66.667 0.00 0.00 0.00 6.09
546 547 2.278596 CTCCCGTGATACCGTGCG 60.279 66.667 0.00 0.00 0.00 5.34
547 548 2.106332 CCTCCCGTGATACCGTGC 59.894 66.667 0.00 0.00 0.00 5.34
548 549 1.735376 CTCCCTCCCGTGATACCGTG 61.735 65.000 0.00 0.00 0.00 4.94
549 550 1.455217 CTCCCTCCCGTGATACCGT 60.455 63.158 0.00 0.00 0.00 4.83
550 551 0.754217 TTCTCCCTCCCGTGATACCG 60.754 60.000 0.00 0.00 0.00 4.02
551 552 1.492764 TTTCTCCCTCCCGTGATACC 58.507 55.000 0.00 0.00 0.00 2.73
552 553 2.764572 TCTTTTCTCCCTCCCGTGATAC 59.235 50.000 0.00 0.00 0.00 2.24
553 554 2.764572 GTCTTTTCTCCCTCCCGTGATA 59.235 50.000 0.00 0.00 0.00 2.15
554 555 1.555533 GTCTTTTCTCCCTCCCGTGAT 59.444 52.381 0.00 0.00 0.00 3.06
555 556 0.974383 GTCTTTTCTCCCTCCCGTGA 59.026 55.000 0.00 0.00 0.00 4.35
556 557 0.036294 GGTCTTTTCTCCCTCCCGTG 60.036 60.000 0.00 0.00 0.00 4.94
557 558 0.473117 TGGTCTTTTCTCCCTCCCGT 60.473 55.000 0.00 0.00 0.00 5.28
558 559 0.036294 GTGGTCTTTTCTCCCTCCCG 60.036 60.000 0.00 0.00 0.00 5.14
559 560 0.328592 GGTGGTCTTTTCTCCCTCCC 59.671 60.000 0.00 0.00 0.00 4.30
560 561 1.064825 TGGTGGTCTTTTCTCCCTCC 58.935 55.000 0.00 0.00 33.46 4.30
561 562 1.420138 TGTGGTGGTCTTTTCTCCCTC 59.580 52.381 0.00 0.00 0.00 4.30
562 563 1.143073 GTGTGGTGGTCTTTTCTCCCT 59.857 52.381 0.00 0.00 0.00 4.20
563 564 1.605753 GTGTGGTGGTCTTTTCTCCC 58.394 55.000 0.00 0.00 0.00 4.30
564 565 1.605753 GGTGTGGTGGTCTTTTCTCC 58.394 55.000 0.00 0.00 0.00 3.71
565 566 1.226746 CGGTGTGGTGGTCTTTTCTC 58.773 55.000 0.00 0.00 0.00 2.87
566 567 0.818040 GCGGTGTGGTGGTCTTTTCT 60.818 55.000 0.00 0.00 0.00 2.52
567 568 1.652563 GCGGTGTGGTGGTCTTTTC 59.347 57.895 0.00 0.00 0.00 2.29
568 569 2.184167 CGCGGTGTGGTGGTCTTTT 61.184 57.895 0.00 0.00 0.00 2.27
569 570 2.590575 CGCGGTGTGGTGGTCTTT 60.591 61.111 0.00 0.00 0.00 2.52
593 594 2.674563 TATATGCGCTGCACCCCCAC 62.675 60.000 9.73 0.00 43.04 4.61
594 595 1.988982 TTATATGCGCTGCACCCCCA 61.989 55.000 9.73 0.00 43.04 4.96
595 596 0.821711 TTTATATGCGCTGCACCCCC 60.822 55.000 9.73 0.00 43.04 5.40
596 597 0.593128 CTTTATATGCGCTGCACCCC 59.407 55.000 9.73 0.00 43.04 4.95
597 598 0.040067 GCTTTATATGCGCTGCACCC 60.040 55.000 9.73 0.00 43.04 4.61
598 599 0.040067 GGCTTTATATGCGCTGCACC 60.040 55.000 9.73 0.00 43.04 5.01
599 600 0.947244 AGGCTTTATATGCGCTGCAC 59.053 50.000 9.73 0.00 43.04 4.57
600 601 1.229428 GAGGCTTTATATGCGCTGCA 58.771 50.000 9.73 5.73 44.86 4.41
601 602 1.229428 TGAGGCTTTATATGCGCTGC 58.771 50.000 9.73 1.43 0.00 5.25
602 603 3.133691 TCTTGAGGCTTTATATGCGCTG 58.866 45.455 9.73 0.00 0.00 5.18
603 604 3.475566 TCTTGAGGCTTTATATGCGCT 57.524 42.857 9.73 0.00 0.00 5.92
604 605 3.561725 ACTTCTTGAGGCTTTATATGCGC 59.438 43.478 0.00 0.00 0.00 6.09
605 606 4.553547 GCACTTCTTGAGGCTTTATATGCG 60.554 45.833 0.00 0.00 0.00 4.73
606 607 4.578105 AGCACTTCTTGAGGCTTTATATGC 59.422 41.667 0.00 0.00 30.68 3.14
672 673 1.652563 GCGGTGTGGTGGTCTTTTC 59.347 57.895 0.00 0.00 0.00 2.29
1152 1230 2.281070 CAGGAGCTGCGTGGTGTT 60.281 61.111 0.00 0.00 0.00 3.32
1428 1506 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1429 1507 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1430 1508 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1431 1509 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1432 1510 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1433 1511 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1434 1512 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1435 1513 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1436 1514 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1437 1515 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1438 1516 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1439 1517 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1440 1518 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1441 1519 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1442 1520 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
1443 1521 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
1444 1522 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
1445 1523 4.614475 ACAGAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1446 1524 4.648762 AGACAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
1447 1525 4.614475 AGACAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1448 1526 4.648762 AGAGACAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
1449 1527 4.614475 AGAGACAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1450 1528 5.221342 GGTAGAGACAGAGAGAGAGAGAGAG 60.221 52.000 0.00 0.00 0.00 3.20
1451 1529 4.649674 GGTAGAGACAGAGAGAGAGAGAGA 59.350 50.000 0.00 0.00 0.00 3.10
1452 1530 4.651503 AGGTAGAGACAGAGAGAGAGAGAG 59.348 50.000 0.00 0.00 0.00 3.20
1453 1531 4.620723 AGGTAGAGACAGAGAGAGAGAGA 58.379 47.826 0.00 0.00 0.00 3.10
1454 1532 6.495181 AGATAGGTAGAGACAGAGAGAGAGAG 59.505 46.154 0.00 0.00 0.00 3.20
1455 1533 6.382087 AGATAGGTAGAGACAGAGAGAGAGA 58.618 44.000 0.00 0.00 0.00 3.10
1466 1566 4.083003 CCGCATGAAGAGATAGGTAGAGAC 60.083 50.000 0.00 0.00 0.00 3.36
1604 1729 5.279910 CCATCCAAATTAGTCCCAAAAGCAA 60.280 40.000 0.00 0.00 0.00 3.91
1609 1734 4.683766 TCCCATCCAAATTAGTCCCAAA 57.316 40.909 0.00 0.00 0.00 3.28
1705 1830 2.174210 AGTGGCAATGCTCCATCATACT 59.826 45.455 4.82 0.00 35.81 2.12
1708 1833 2.154567 AAGTGGCAATGCTCCATCAT 57.845 45.000 4.82 0.00 35.81 2.45
1939 2067 4.216257 GCCTTTTCAAAGCAGTCTATCACA 59.784 41.667 0.00 0.00 34.69 3.58
2151 2279 2.289569 GCTGCCTCCTATTGAGAGATGG 60.290 54.545 0.00 0.00 44.42 3.51
2156 2284 2.165357 TGAGCTGCCTCCTATTGAGA 57.835 50.000 0.00 0.00 44.42 3.27
2216 2344 2.113774 CACCAGCTGCAACCTCCA 59.886 61.111 8.66 0.00 0.00 3.86
2277 2405 1.480137 TGTTGGGGTTGCAAAGAAGTG 59.520 47.619 0.00 0.00 0.00 3.16
2306 2434 7.386025 TCATGCATATATGTAGACAAAGCAGAC 59.614 37.037 14.14 0.00 32.59 3.51
2354 2482 4.177026 CAGTCTGACACATAGTTAGTGCC 58.823 47.826 10.88 0.00 40.59 5.01
2538 2666 5.606348 ACACCACAGATTTTTAGCCAAAA 57.394 34.783 0.00 0.00 38.76 2.44
2840 2971 1.626825 GGGTGGCAAGGTTACTCACTA 59.373 52.381 0.00 0.00 0.00 2.74
2931 3068 7.489757 TGGAATTTCTTTTTAAACGGAACACTG 59.510 33.333 0.00 0.00 0.00 3.66
2959 3096 4.206404 CGATCGTACACATTAAATCTGCGT 59.794 41.667 7.03 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.