Multiple sequence alignment - TraesCS3B01G115300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G115300 chr3B 100.000 2896 0 0 1 2896 82039232 82042127 0.000000e+00 5349
1 TraesCS3B01G115300 chr3B 100.000 2033 0 0 3295 5327 82042526 82044558 0.000000e+00 3755
2 TraesCS3B01G115300 chr3B 99.191 989 8 0 1908 2896 748456315 748457303 0.000000e+00 1783
3 TraesCS3B01G115300 chr3B 99.091 990 9 0 1907 2896 78549523 78548534 0.000000e+00 1779
4 TraesCS3B01G115300 chr3A 95.946 1406 46 4 509 1908 64015068 64016468 0.000000e+00 2270
5 TraesCS3B01G115300 chr3A 98.069 1191 22 1 3307 4496 64016455 64017645 0.000000e+00 2071
6 TraesCS3B01G115300 chr3A 98.991 991 8 2 1907 2896 670849940 670850929 0.000000e+00 1773
7 TraesCS3B01G115300 chr3A 93.720 828 17 9 4533 5327 64017952 64018777 0.000000e+00 1208
8 TraesCS3B01G115300 chr3D 96.012 1354 54 0 556 1909 51089773 51091126 0.000000e+00 2202
9 TraesCS3B01G115300 chr3D 97.034 1315 25 7 3307 4608 51091112 51092425 0.000000e+00 2200
10 TraesCS3B01G115300 chr3D 97.500 640 10 5 4693 5327 51092596 51093234 0.000000e+00 1088
11 TraesCS3B01G115300 chr3D 95.495 111 4 1 58 168 51083347 51083456 5.480000e-40 176
12 TraesCS3B01G115300 chr6B 99.495 990 5 0 1907 2896 527576874 527577863 0.000000e+00 1801
13 TraesCS3B01G115300 chr4B 99.394 990 6 0 1907 2896 661203956 661204945 0.000000e+00 1796
14 TraesCS3B01G115300 chr7B 99.190 988 8 0 1909 2896 744908612 744907625 0.000000e+00 1781
15 TraesCS3B01G115300 chrUn 99.090 989 9 0 1908 2896 449434577 449433589 0.000000e+00 1777
16 TraesCS3B01G115300 chr5B 99.089 988 9 0 1909 2896 337156589 337155602 0.000000e+00 1775
17 TraesCS3B01G115300 chr2B 99.089 988 9 0 1909 2896 359626416 359625429 0.000000e+00 1775


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G115300 chr3B 82039232 82044558 5326 False 4552.000000 5349 100.000000 1 5327 2 chr3B.!!$F2 5326
1 TraesCS3B01G115300 chr3B 748456315 748457303 988 False 1783.000000 1783 99.191000 1908 2896 1 chr3B.!!$F1 988
2 TraesCS3B01G115300 chr3B 78548534 78549523 989 True 1779.000000 1779 99.091000 1907 2896 1 chr3B.!!$R1 989
3 TraesCS3B01G115300 chr3A 64015068 64018777 3709 False 1849.666667 2270 95.911667 509 5327 3 chr3A.!!$F2 4818
4 TraesCS3B01G115300 chr3A 670849940 670850929 989 False 1773.000000 1773 98.991000 1907 2896 1 chr3A.!!$F1 989
5 TraesCS3B01G115300 chr3D 51089773 51093234 3461 False 1830.000000 2202 96.848667 556 5327 3 chr3D.!!$F2 4771
6 TraesCS3B01G115300 chr6B 527576874 527577863 989 False 1801.000000 1801 99.495000 1907 2896 1 chr6B.!!$F1 989
7 TraesCS3B01G115300 chr4B 661203956 661204945 989 False 1796.000000 1796 99.394000 1907 2896 1 chr4B.!!$F1 989
8 TraesCS3B01G115300 chr7B 744907625 744908612 987 True 1781.000000 1781 99.190000 1909 2896 1 chr7B.!!$R1 987
9 TraesCS3B01G115300 chrUn 449433589 449434577 988 True 1777.000000 1777 99.090000 1908 2896 1 chrUn.!!$R1 988
10 TraesCS3B01G115300 chr5B 337155602 337156589 987 True 1775.000000 1775 99.089000 1909 2896 1 chr5B.!!$R1 987
11 TraesCS3B01G115300 chr2B 359625429 359626416 987 True 1775.000000 1775 99.089000 1909 2896 1 chr2B.!!$R1 987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.039978 ACGAAGACGAGACAGTGCAG 60.040 55.000 0.00 0.0 42.66 4.41 F
519 520 0.103208 CCGTCATACTCTGCCAGACC 59.897 60.000 0.00 0.0 0.00 3.85 F
1156 1163 0.034670 GAGCCTCTCAGCCACCAAAT 60.035 55.000 0.00 0.0 0.00 2.32 F
1161 1168 0.038166 TCTCAGCCACCAAATCACCC 59.962 55.000 0.00 0.0 0.00 4.61 F
1599 1606 0.173255 TGCAGACGATGAATCTCGCA 59.827 50.000 0.00 0.0 42.35 5.10 F
1626 1633 1.953138 CTGGATGGTCGAGATGCGC 60.953 63.158 0.00 0.0 40.61 6.09 F
2049 2057 3.219645 AAATGCCAACAACGCCGGG 62.220 57.895 2.18 0.0 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1139 1146 0.322816 TGATTTGGTGGCTGAGAGGC 60.323 55.000 0.00 0.00 41.77 4.70 R
1558 1565 1.152312 ACTGGTCCTCGAGGTTGGT 60.152 57.895 30.17 20.32 36.34 3.67 R
2049 2057 1.443194 TGCCGTAGCTTTCGTCGAC 60.443 57.895 5.18 5.18 40.80 4.20 R
3334 3343 4.566907 GGGGTGCTTAGAAGTGGTTAATGA 60.567 45.833 0.00 0.00 0.00 2.57 R
3613 3623 8.522830 TGAGGAAATTCGAAATTTGCTTTCTAT 58.477 29.630 19.70 10.67 40.99 1.98 R
4002 4012 2.264480 CTCCCGTTCATGCCGTCA 59.736 61.111 4.32 0.00 0.00 4.35 R
4362 4372 1.069973 CATGCACACACACCACTAACG 60.070 52.381 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.153913 GCACAGCAAGTACTCCACG 58.846 57.895 0.00 0.00 0.00 4.94
19 20 1.291877 GCACAGCAAGTACTCCACGG 61.292 60.000 0.00 0.00 0.00 4.94
20 21 1.004918 ACAGCAAGTACTCCACGGC 60.005 57.895 0.00 0.00 33.92 5.68
21 22 1.005037 CAGCAAGTACTCCACGGCA 60.005 57.895 0.00 0.00 35.53 5.69
22 23 0.602638 CAGCAAGTACTCCACGGCAA 60.603 55.000 0.00 0.00 35.53 4.52
23 24 0.324943 AGCAAGTACTCCACGGCAAT 59.675 50.000 0.00 0.00 35.53 3.56
24 25 1.165270 GCAAGTACTCCACGGCAATT 58.835 50.000 0.00 0.00 33.92 2.32
25 26 2.027561 AGCAAGTACTCCACGGCAATTA 60.028 45.455 0.00 0.00 35.53 1.40
26 27 2.943033 GCAAGTACTCCACGGCAATTAT 59.057 45.455 0.00 0.00 33.92 1.28
27 28 3.377172 GCAAGTACTCCACGGCAATTATT 59.623 43.478 0.00 0.00 33.92 1.40
28 29 4.142469 GCAAGTACTCCACGGCAATTATTT 60.142 41.667 0.00 0.00 33.92 1.40
29 30 5.065474 GCAAGTACTCCACGGCAATTATTTA 59.935 40.000 0.00 0.00 33.92 1.40
30 31 6.483687 CAAGTACTCCACGGCAATTATTTAC 58.516 40.000 0.00 0.00 0.00 2.01
31 32 5.736813 AGTACTCCACGGCAATTATTTACA 58.263 37.500 0.00 0.00 0.00 2.41
32 33 4.957759 ACTCCACGGCAATTATTTACAC 57.042 40.909 0.00 0.00 0.00 2.90
33 34 4.328536 ACTCCACGGCAATTATTTACACA 58.671 39.130 0.00 0.00 0.00 3.72
34 35 4.394920 ACTCCACGGCAATTATTTACACAG 59.605 41.667 0.00 0.00 0.00 3.66
35 36 3.692101 TCCACGGCAATTATTTACACAGG 59.308 43.478 0.00 0.00 0.00 4.00
36 37 3.692101 CCACGGCAATTATTTACACAGGA 59.308 43.478 0.00 0.00 0.00 3.86
37 38 4.201910 CCACGGCAATTATTTACACAGGAG 60.202 45.833 0.00 0.00 0.00 3.69
38 39 4.394920 CACGGCAATTATTTACACAGGAGT 59.605 41.667 0.00 0.00 0.00 3.85
39 40 5.583061 CACGGCAATTATTTACACAGGAGTA 59.417 40.000 0.00 0.00 0.00 2.59
40 41 5.583457 ACGGCAATTATTTACACAGGAGTAC 59.417 40.000 0.00 0.00 0.00 2.73
41 42 5.583061 CGGCAATTATTTACACAGGAGTACA 59.417 40.000 0.00 0.00 0.00 2.90
42 43 6.456449 CGGCAATTATTTACACAGGAGTACAC 60.456 42.308 0.00 0.00 0.00 2.90
43 44 6.183360 GGCAATTATTTACACAGGAGTACACC 60.183 42.308 0.27 0.27 0.00 4.16
44 45 6.598064 GCAATTATTTACACAGGAGTACACCT 59.402 38.462 5.96 5.96 41.43 4.00
45 46 7.767198 GCAATTATTTACACAGGAGTACACCTA 59.233 37.037 11.85 0.00 38.32 3.08
46 47 9.832445 CAATTATTTACACAGGAGTACACCTAT 57.168 33.333 11.85 0.00 38.32 2.57
51 52 9.832445 ATTTACACAGGAGTACACCTATATTTG 57.168 33.333 11.85 6.96 38.32 2.32
52 53 6.869206 ACACAGGAGTACACCTATATTTGT 57.131 37.500 11.85 7.52 38.32 2.83
53 54 7.966339 ACACAGGAGTACACCTATATTTGTA 57.034 36.000 11.85 0.00 38.32 2.41
54 55 8.008513 ACACAGGAGTACACCTATATTTGTAG 57.991 38.462 11.85 0.00 38.32 2.74
55 56 7.837689 ACACAGGAGTACACCTATATTTGTAGA 59.162 37.037 11.85 0.00 38.32 2.59
56 57 8.353684 CACAGGAGTACACCTATATTTGTAGAG 58.646 40.741 11.85 0.00 38.32 2.43
57 58 7.014422 ACAGGAGTACACCTATATTTGTAGAGC 59.986 40.741 11.85 0.00 38.32 4.09
58 59 7.014326 CAGGAGTACACCTATATTTGTAGAGCA 59.986 40.741 11.85 0.00 38.32 4.26
59 60 7.231722 AGGAGTACACCTATATTTGTAGAGCAG 59.768 40.741 10.47 0.00 38.65 4.24
60 61 7.014422 GGAGTACACCTATATTTGTAGAGCAGT 59.986 40.741 1.54 0.00 0.00 4.40
61 62 8.991783 AGTACACCTATATTTGTAGAGCAGTA 57.008 34.615 0.00 0.00 0.00 2.74
62 63 8.848182 AGTACACCTATATTTGTAGAGCAGTAC 58.152 37.037 0.00 0.00 0.00 2.73
63 64 7.899648 ACACCTATATTTGTAGAGCAGTACT 57.100 36.000 0.00 0.00 0.00 2.73
64 65 7.942990 ACACCTATATTTGTAGAGCAGTACTC 58.057 38.462 0.00 0.00 46.66 2.59
79 80 8.245701 GAGCAGTACTCCTATATTATTTGCAC 57.754 38.462 0.00 0.00 39.75 4.57
80 81 7.735917 AGCAGTACTCCTATATTATTTGCACA 58.264 34.615 0.00 0.00 0.00 4.57
81 82 7.875041 AGCAGTACTCCTATATTATTTGCACAG 59.125 37.037 0.00 0.00 0.00 3.66
82 83 7.118390 GCAGTACTCCTATATTATTTGCACAGG 59.882 40.741 0.00 0.00 0.00 4.00
83 84 8.367911 CAGTACTCCTATATTATTTGCACAGGA 58.632 37.037 0.00 0.00 0.00 3.86
89 90 9.866655 TCCTATATTATTTGCACAGGAGAATTT 57.133 29.630 0.00 0.00 0.00 1.82
95 96 4.519540 TTGCACAGGAGAATTTTAAGGC 57.480 40.909 0.00 0.00 0.00 4.35
96 97 3.495331 TGCACAGGAGAATTTTAAGGCA 58.505 40.909 0.00 0.00 0.00 4.75
97 98 4.088634 TGCACAGGAGAATTTTAAGGCAT 58.911 39.130 0.00 0.00 0.00 4.40
98 99 4.158394 TGCACAGGAGAATTTTAAGGCATC 59.842 41.667 0.00 0.00 0.00 3.91
99 100 4.400567 GCACAGGAGAATTTTAAGGCATCT 59.599 41.667 0.00 0.00 0.00 2.90
100 101 5.590259 GCACAGGAGAATTTTAAGGCATCTA 59.410 40.000 0.00 0.00 0.00 1.98
101 102 6.095440 GCACAGGAGAATTTTAAGGCATCTAA 59.905 38.462 0.00 0.00 0.00 2.10
102 103 7.362920 GCACAGGAGAATTTTAAGGCATCTAAA 60.363 37.037 0.00 0.00 0.00 1.85
103 104 8.689972 CACAGGAGAATTTTAAGGCATCTAAAT 58.310 33.333 0.00 0.00 0.00 1.40
104 105 9.920946 ACAGGAGAATTTTAAGGCATCTAAATA 57.079 29.630 0.00 0.00 0.00 1.40
126 127 9.676195 AAATATTTGCCTAAAATGTTTTTGCAC 57.324 25.926 0.00 1.58 43.20 4.57
127 128 6.690194 ATTTGCCTAAAATGTTTTTGCACA 57.310 29.167 11.94 8.29 37.09 4.57
128 129 5.476752 TTGCCTAAAATGTTTTTGCACAC 57.523 34.783 11.94 0.00 36.84 3.82
129 130 4.507710 TGCCTAAAATGTTTTTGCACACA 58.492 34.783 9.58 0.00 34.19 3.72
130 131 4.937620 TGCCTAAAATGTTTTTGCACACAA 59.062 33.333 9.58 0.00 34.19 3.33
131 132 5.064452 TGCCTAAAATGTTTTTGCACACAAG 59.936 36.000 9.58 0.00 37.04 3.16
132 133 5.503846 GCCTAAAATGTTTTTGCACACAAGG 60.504 40.000 0.00 0.00 37.04 3.61
133 134 5.814705 CCTAAAATGTTTTTGCACACAAGGA 59.185 36.000 0.00 0.00 37.04 3.36
134 135 6.314896 CCTAAAATGTTTTTGCACACAAGGAA 59.685 34.615 0.00 0.00 37.04 3.36
135 136 6.566197 AAAATGTTTTTGCACACAAGGAAA 57.434 29.167 0.00 0.00 37.04 3.13
136 137 6.566197 AAATGTTTTTGCACACAAGGAAAA 57.434 29.167 0.00 0.00 37.10 2.29
137 138 4.999751 TGTTTTTGCACACAAGGAAAAC 57.000 36.364 11.81 11.81 38.31 2.43
138 139 3.748568 TGTTTTTGCACACAAGGAAAACC 59.251 39.130 14.72 0.00 38.31 3.27
139 140 3.685139 TTTTGCACACAAGGAAAACCA 57.315 38.095 0.00 0.00 37.04 3.67
140 141 3.685139 TTTGCACACAAGGAAAACCAA 57.315 38.095 0.00 0.00 37.04 3.67
141 142 3.685139 TTGCACACAAGGAAAACCAAA 57.315 38.095 0.00 0.00 0.00 3.28
142 143 3.902881 TGCACACAAGGAAAACCAAAT 57.097 38.095 0.00 0.00 0.00 2.32
143 144 4.213564 TGCACACAAGGAAAACCAAATT 57.786 36.364 0.00 0.00 0.00 1.82
144 145 3.937706 TGCACACAAGGAAAACCAAATTG 59.062 39.130 0.00 0.00 0.00 2.32
145 146 3.938334 GCACACAAGGAAAACCAAATTGT 59.062 39.130 0.00 0.00 34.56 2.71
146 147 5.112686 GCACACAAGGAAAACCAAATTGTA 58.887 37.500 0.00 0.00 33.04 2.41
147 148 5.006261 GCACACAAGGAAAACCAAATTGTAC 59.994 40.000 0.00 0.00 33.04 2.90
148 149 6.102663 CACACAAGGAAAACCAAATTGTACA 58.897 36.000 0.00 0.00 33.04 2.90
149 150 6.035542 CACACAAGGAAAACCAAATTGTACAC 59.964 38.462 0.00 0.00 33.04 2.90
150 151 5.522097 CACAAGGAAAACCAAATTGTACACC 59.478 40.000 0.00 0.00 33.04 4.16
151 152 5.423931 ACAAGGAAAACCAAATTGTACACCT 59.576 36.000 0.00 0.00 32.58 4.00
152 153 6.608002 ACAAGGAAAACCAAATTGTACACCTA 59.392 34.615 0.00 0.00 32.58 3.08
153 154 7.289084 ACAAGGAAAACCAAATTGTACACCTAT 59.711 33.333 0.00 0.00 32.58 2.57
154 155 8.798402 CAAGGAAAACCAAATTGTACACCTATA 58.202 33.333 0.00 0.00 0.00 1.31
155 156 8.344446 AGGAAAACCAAATTGTACACCTATAC 57.656 34.615 0.00 0.00 0.00 1.47
156 157 8.168058 AGGAAAACCAAATTGTACACCTATACT 58.832 33.333 0.00 0.00 0.00 2.12
157 158 8.799367 GGAAAACCAAATTGTACACCTATACTT 58.201 33.333 0.00 0.00 0.00 2.24
158 159 9.836076 GAAAACCAAATTGTACACCTATACTTC 57.164 33.333 0.00 0.00 0.00 3.01
159 160 9.582648 AAAACCAAATTGTACACCTATACTTCT 57.417 29.630 0.00 0.00 0.00 2.85
160 161 8.788325 AACCAAATTGTACACCTATACTTCTC 57.212 34.615 0.00 0.00 0.00 2.87
161 162 7.336396 ACCAAATTGTACACCTATACTTCTCC 58.664 38.462 0.00 0.00 0.00 3.71
162 163 7.037873 ACCAAATTGTACACCTATACTTCTCCA 60.038 37.037 0.00 0.00 0.00 3.86
163 164 7.495934 CCAAATTGTACACCTATACTTCTCCAG 59.504 40.741 0.00 0.00 0.00 3.86
164 165 5.593679 TTGTACACCTATACTTCTCCAGC 57.406 43.478 0.00 0.00 0.00 4.85
165 166 4.606210 TGTACACCTATACTTCTCCAGCA 58.394 43.478 0.00 0.00 0.00 4.41
166 167 4.401519 TGTACACCTATACTTCTCCAGCAC 59.598 45.833 0.00 0.00 0.00 4.40
167 168 3.441101 ACACCTATACTTCTCCAGCACA 58.559 45.455 0.00 0.00 0.00 4.57
168 169 3.838317 ACACCTATACTTCTCCAGCACAA 59.162 43.478 0.00 0.00 0.00 3.33
169 170 4.184629 CACCTATACTTCTCCAGCACAAC 58.815 47.826 0.00 0.00 0.00 3.32
170 171 3.119101 ACCTATACTTCTCCAGCACAACG 60.119 47.826 0.00 0.00 0.00 4.10
171 172 3.130516 CCTATACTTCTCCAGCACAACGA 59.869 47.826 0.00 0.00 0.00 3.85
172 173 2.724977 TACTTCTCCAGCACAACGAG 57.275 50.000 0.00 0.00 0.00 4.18
173 174 0.753262 ACTTCTCCAGCACAACGAGT 59.247 50.000 0.00 0.00 0.00 4.18
174 175 1.961394 ACTTCTCCAGCACAACGAGTA 59.039 47.619 0.00 0.00 0.00 2.59
175 176 2.288273 ACTTCTCCAGCACAACGAGTAC 60.288 50.000 0.00 0.00 0.00 2.73
176 177 1.617322 TCTCCAGCACAACGAGTACT 58.383 50.000 0.00 0.00 0.00 2.73
177 178 1.540267 TCTCCAGCACAACGAGTACTC 59.460 52.381 13.18 13.18 0.00 2.59
178 179 0.601558 TCCAGCACAACGAGTACTCC 59.398 55.000 17.23 1.96 0.00 3.85
179 180 0.317160 CCAGCACAACGAGTACTCCA 59.683 55.000 17.23 0.00 0.00 3.86
180 181 1.270094 CCAGCACAACGAGTACTCCAA 60.270 52.381 17.23 0.00 0.00 3.53
181 182 2.061773 CAGCACAACGAGTACTCCAAG 58.938 52.381 17.23 9.11 0.00 3.61
182 183 1.687123 AGCACAACGAGTACTCCAAGT 59.313 47.619 17.23 9.73 0.00 3.16
183 184 2.059541 GCACAACGAGTACTCCAAGTC 58.940 52.381 17.23 0.00 0.00 3.01
184 185 2.288273 GCACAACGAGTACTCCAAGTCT 60.288 50.000 17.23 0.00 0.00 3.24
185 186 3.799232 GCACAACGAGTACTCCAAGTCTT 60.799 47.826 17.23 0.00 0.00 3.01
186 187 4.558095 GCACAACGAGTACTCCAAGTCTTA 60.558 45.833 17.23 0.00 0.00 2.10
187 188 5.710984 CACAACGAGTACTCCAAGTCTTAT 58.289 41.667 17.23 0.00 0.00 1.73
188 189 6.624423 GCACAACGAGTACTCCAAGTCTTATA 60.624 42.308 17.23 0.00 0.00 0.98
189 190 6.746364 CACAACGAGTACTCCAAGTCTTATAC 59.254 42.308 17.23 0.00 0.00 1.47
190 191 6.658391 ACAACGAGTACTCCAAGTCTTATACT 59.342 38.462 17.23 0.00 41.49 2.12
191 192 6.923928 ACGAGTACTCCAAGTCTTATACTC 57.076 41.667 17.23 11.76 37.50 2.59
192 193 5.821995 ACGAGTACTCCAAGTCTTATACTCC 59.178 44.000 17.23 0.00 37.50 3.85
193 194 5.821470 CGAGTACTCCAAGTCTTATACTCCA 59.179 44.000 17.23 0.00 37.50 3.86
194 195 6.318144 CGAGTACTCCAAGTCTTATACTCCAA 59.682 42.308 17.23 0.00 37.50 3.53
195 196 7.148120 CGAGTACTCCAAGTCTTATACTCCAAA 60.148 40.741 17.23 0.00 37.50 3.28
196 197 8.611051 AGTACTCCAAGTCTTATACTCCAAAT 57.389 34.615 0.00 0.00 37.50 2.32
197 198 8.478877 AGTACTCCAAGTCTTATACTCCAAATG 58.521 37.037 0.00 0.00 37.50 2.32
198 199 6.116126 ACTCCAAGTCTTATACTCCAAATGC 58.884 40.000 0.00 0.00 37.50 3.56
199 200 6.069963 ACTCCAAGTCTTATACTCCAAATGCT 60.070 38.462 0.00 0.00 37.50 3.79
200 201 6.721318 TCCAAGTCTTATACTCCAAATGCTT 58.279 36.000 0.00 0.00 37.50 3.91
201 202 6.823689 TCCAAGTCTTATACTCCAAATGCTTC 59.176 38.462 0.00 0.00 37.50 3.86
202 203 6.238211 CCAAGTCTTATACTCCAAATGCTTCG 60.238 42.308 0.00 0.00 37.50 3.79
203 204 4.811557 AGTCTTATACTCCAAATGCTTCGC 59.188 41.667 0.00 0.00 30.33 4.70
204 205 4.024809 GTCTTATACTCCAAATGCTTCGCC 60.025 45.833 0.00 0.00 0.00 5.54
205 206 2.717639 ATACTCCAAATGCTTCGCCT 57.282 45.000 0.00 0.00 0.00 5.52
206 207 2.489938 TACTCCAAATGCTTCGCCTT 57.510 45.000 0.00 0.00 0.00 4.35
207 208 0.883833 ACTCCAAATGCTTCGCCTTG 59.116 50.000 0.00 0.00 0.00 3.61
208 209 0.883833 CTCCAAATGCTTCGCCTTGT 59.116 50.000 0.00 0.00 0.00 3.16
209 210 1.270550 CTCCAAATGCTTCGCCTTGTT 59.729 47.619 0.00 0.00 0.00 2.83
210 211 1.686052 TCCAAATGCTTCGCCTTGTTT 59.314 42.857 0.00 0.00 0.00 2.83
211 212 2.102252 TCCAAATGCTTCGCCTTGTTTT 59.898 40.909 0.00 0.00 0.00 2.43
212 213 2.871633 CCAAATGCTTCGCCTTGTTTTT 59.128 40.909 0.00 0.00 0.00 1.94
213 214 4.054671 CCAAATGCTTCGCCTTGTTTTTA 58.945 39.130 0.00 0.00 0.00 1.52
214 215 4.150451 CCAAATGCTTCGCCTTGTTTTTAG 59.850 41.667 0.00 0.00 0.00 1.85
215 216 4.584327 AATGCTTCGCCTTGTTTTTAGT 57.416 36.364 0.00 0.00 0.00 2.24
216 217 3.347958 TGCTTCGCCTTGTTTTTAGTG 57.652 42.857 0.00 0.00 0.00 2.74
217 218 2.034053 TGCTTCGCCTTGTTTTTAGTGG 59.966 45.455 0.00 0.00 0.00 4.00
218 219 2.034179 GCTTCGCCTTGTTTTTAGTGGT 59.966 45.455 0.00 0.00 0.00 4.16
219 220 3.852205 GCTTCGCCTTGTTTTTAGTGGTC 60.852 47.826 0.00 0.00 0.00 4.02
220 221 3.202829 TCGCCTTGTTTTTAGTGGTCT 57.797 42.857 0.00 0.00 0.00 3.85
221 222 3.547746 TCGCCTTGTTTTTAGTGGTCTT 58.452 40.909 0.00 0.00 0.00 3.01
222 223 4.706035 TCGCCTTGTTTTTAGTGGTCTTA 58.294 39.130 0.00 0.00 0.00 2.10
223 224 4.753107 TCGCCTTGTTTTTAGTGGTCTTAG 59.247 41.667 0.00 0.00 0.00 2.18
224 225 4.083484 CGCCTTGTTTTTAGTGGTCTTAGG 60.083 45.833 0.00 0.00 0.00 2.69
225 226 4.217767 GCCTTGTTTTTAGTGGTCTTAGGG 59.782 45.833 0.00 0.00 0.00 3.53
226 227 4.217767 CCTTGTTTTTAGTGGTCTTAGGGC 59.782 45.833 0.00 0.00 0.00 5.19
227 228 3.758425 TGTTTTTAGTGGTCTTAGGGCC 58.242 45.455 0.00 0.00 0.00 5.80
228 229 3.138653 TGTTTTTAGTGGTCTTAGGGCCA 59.861 43.478 6.18 0.00 0.00 5.36
229 230 3.713826 TTTTAGTGGTCTTAGGGCCAG 57.286 47.619 6.18 0.00 35.14 4.85
230 231 2.634639 TTAGTGGTCTTAGGGCCAGA 57.365 50.000 6.18 0.00 35.14 3.86
231 232 2.868964 TAGTGGTCTTAGGGCCAGAT 57.131 50.000 6.18 0.00 35.14 2.90
232 233 1.207791 AGTGGTCTTAGGGCCAGATG 58.792 55.000 6.18 0.00 35.14 2.90
233 234 0.181350 GTGGTCTTAGGGCCAGATGG 59.819 60.000 6.18 0.00 35.14 3.51
234 235 0.253160 TGGTCTTAGGGCCAGATGGT 60.253 55.000 6.18 0.00 37.57 3.55
235 236 0.181350 GGTCTTAGGGCCAGATGGTG 59.819 60.000 6.18 0.00 37.57 4.17
243 244 3.129502 CCAGATGGTGGTGCAGCG 61.130 66.667 11.91 0.00 42.17 5.18
244 245 2.046988 CAGATGGTGGTGCAGCGA 60.047 61.111 11.91 0.00 34.27 4.93
245 246 1.672030 CAGATGGTGGTGCAGCGAA 60.672 57.895 11.91 0.00 34.27 4.70
246 247 1.028330 CAGATGGTGGTGCAGCGAAT 61.028 55.000 11.91 4.44 34.27 3.34
247 248 0.745845 AGATGGTGGTGCAGCGAATC 60.746 55.000 11.91 13.25 34.27 2.52
248 249 1.718757 GATGGTGGTGCAGCGAATCC 61.719 60.000 11.91 11.18 34.27 3.01
249 250 2.045926 GGTGGTGCAGCGAATCCT 60.046 61.111 11.91 0.00 0.00 3.24
250 251 1.220749 GGTGGTGCAGCGAATCCTA 59.779 57.895 11.91 0.00 0.00 2.94
251 252 0.811616 GGTGGTGCAGCGAATCCTAG 60.812 60.000 11.91 0.00 0.00 3.02
252 253 1.153369 TGGTGCAGCGAATCCTAGC 60.153 57.895 11.91 0.00 0.00 3.42
253 254 1.889573 GGTGCAGCGAATCCTAGCC 60.890 63.158 0.00 0.00 0.00 3.93
254 255 1.144936 GTGCAGCGAATCCTAGCCT 59.855 57.895 0.00 0.00 0.00 4.58
255 256 0.462759 GTGCAGCGAATCCTAGCCTT 60.463 55.000 0.00 0.00 0.00 4.35
256 257 0.253044 TGCAGCGAATCCTAGCCTTT 59.747 50.000 0.00 0.00 0.00 3.11
257 258 0.659957 GCAGCGAATCCTAGCCTTTG 59.340 55.000 0.00 0.00 0.00 2.77
258 259 0.659957 CAGCGAATCCTAGCCTTTGC 59.340 55.000 6.62 6.62 37.95 3.68
259 260 0.464554 AGCGAATCCTAGCCTTTGCC 60.465 55.000 9.82 0.00 38.69 4.52
260 261 1.448119 GCGAATCCTAGCCTTTGCCC 61.448 60.000 0.00 0.00 38.69 5.36
261 262 1.160329 CGAATCCTAGCCTTTGCCCG 61.160 60.000 0.00 0.00 38.69 6.13
262 263 0.107165 GAATCCTAGCCTTTGCCCGT 60.107 55.000 0.00 0.00 38.69 5.28
263 264 0.394352 AATCCTAGCCTTTGCCCGTG 60.394 55.000 0.00 0.00 38.69 4.94
264 265 2.270874 ATCCTAGCCTTTGCCCGTGG 62.271 60.000 0.00 0.00 38.69 4.94
265 266 2.438434 CTAGCCTTTGCCCGTGGG 60.438 66.667 0.00 0.00 38.69 4.61
266 267 2.931105 TAGCCTTTGCCCGTGGGA 60.931 61.111 9.72 0.00 38.69 4.37
267 268 2.876368 CTAGCCTTTGCCCGTGGGAG 62.876 65.000 9.72 0.00 38.69 4.30
283 284 1.735386 GGAGGCCTCCGTTTTTAGAC 58.265 55.000 35.77 9.35 40.36 2.59
284 285 1.278413 GGAGGCCTCCGTTTTTAGACT 59.722 52.381 35.77 0.00 40.36 3.24
285 286 2.347731 GAGGCCTCCGTTTTTAGACTG 58.652 52.381 23.19 0.00 0.00 3.51
286 287 0.803117 GGCCTCCGTTTTTAGACTGC 59.197 55.000 0.00 0.00 0.00 4.40
287 288 1.610886 GGCCTCCGTTTTTAGACTGCT 60.611 52.381 0.00 0.00 0.00 4.24
288 289 1.732809 GCCTCCGTTTTTAGACTGCTC 59.267 52.381 0.00 0.00 0.00 4.26
289 290 2.870435 GCCTCCGTTTTTAGACTGCTCA 60.870 50.000 0.00 0.00 0.00 4.26
290 291 2.737252 CCTCCGTTTTTAGACTGCTCAC 59.263 50.000 0.00 0.00 0.00 3.51
291 292 2.400399 TCCGTTTTTAGACTGCTCACG 58.600 47.619 0.00 0.00 0.00 4.35
292 293 2.034939 TCCGTTTTTAGACTGCTCACGA 59.965 45.455 0.00 0.00 0.00 4.35
293 294 2.798283 CCGTTTTTAGACTGCTCACGAA 59.202 45.455 0.00 0.00 0.00 3.85
294 295 3.120991 CCGTTTTTAGACTGCTCACGAAG 60.121 47.826 0.00 0.00 0.00 3.79
295 296 3.734231 CGTTTTTAGACTGCTCACGAAGA 59.266 43.478 0.00 0.00 0.00 2.87
296 297 4.375105 CGTTTTTAGACTGCTCACGAAGAC 60.375 45.833 0.00 0.00 0.00 3.01
297 298 2.613730 TTAGACTGCTCACGAAGACG 57.386 50.000 0.00 0.00 45.75 4.18
298 299 1.804601 TAGACTGCTCACGAAGACGA 58.195 50.000 0.00 0.00 42.66 4.20
299 300 0.519519 AGACTGCTCACGAAGACGAG 59.480 55.000 0.00 0.00 42.66 4.18
300 301 0.517755 GACTGCTCACGAAGACGAGA 59.482 55.000 0.00 0.00 42.66 4.04
301 302 0.238817 ACTGCTCACGAAGACGAGAC 59.761 55.000 0.00 0.00 42.66 3.36
302 303 0.238553 CTGCTCACGAAGACGAGACA 59.761 55.000 0.00 0.00 42.66 3.41
303 304 0.238553 TGCTCACGAAGACGAGACAG 59.761 55.000 0.00 0.00 42.66 3.51
304 305 0.238817 GCTCACGAAGACGAGACAGT 59.761 55.000 0.00 0.00 42.66 3.55
305 306 1.957089 CTCACGAAGACGAGACAGTG 58.043 55.000 0.00 0.00 42.66 3.66
306 307 0.040336 TCACGAAGACGAGACAGTGC 60.040 55.000 0.00 0.00 42.66 4.40
307 308 0.317854 CACGAAGACGAGACAGTGCA 60.318 55.000 0.00 0.00 42.66 4.57
308 309 0.039978 ACGAAGACGAGACAGTGCAG 60.040 55.000 0.00 0.00 42.66 4.41
309 310 1.340657 CGAAGACGAGACAGTGCAGC 61.341 60.000 0.00 0.00 42.66 5.25
310 311 1.340657 GAAGACGAGACAGTGCAGCG 61.341 60.000 0.00 0.00 0.00 5.18
311 312 2.049985 GACGAGACAGTGCAGCGT 60.050 61.111 4.70 4.70 37.97 5.07
312 313 1.661821 GACGAGACAGTGCAGCGTT 60.662 57.895 6.27 0.00 35.09 4.84
313 314 1.215655 GACGAGACAGTGCAGCGTTT 61.216 55.000 6.27 0.00 35.09 3.60
314 315 1.202568 CGAGACAGTGCAGCGTTTG 59.797 57.895 0.00 0.00 0.00 2.93
315 316 1.490693 CGAGACAGTGCAGCGTTTGT 61.491 55.000 0.00 0.00 0.00 2.83
316 317 1.497991 GAGACAGTGCAGCGTTTGTA 58.502 50.000 0.00 0.00 0.00 2.41
317 318 1.457303 GAGACAGTGCAGCGTTTGTAG 59.543 52.381 0.00 0.00 0.00 2.74
318 319 1.202533 AGACAGTGCAGCGTTTGTAGT 60.203 47.619 0.00 0.00 0.00 2.73
319 320 1.192534 GACAGTGCAGCGTTTGTAGTC 59.807 52.381 0.00 0.00 0.00 2.59
320 321 1.217001 CAGTGCAGCGTTTGTAGTCA 58.783 50.000 0.00 0.00 0.00 3.41
321 322 1.800586 CAGTGCAGCGTTTGTAGTCAT 59.199 47.619 0.00 0.00 0.00 3.06
322 323 2.224079 CAGTGCAGCGTTTGTAGTCATT 59.776 45.455 0.00 0.00 0.00 2.57
323 324 2.224079 AGTGCAGCGTTTGTAGTCATTG 59.776 45.455 0.00 0.00 0.00 2.82
324 325 2.032030 GTGCAGCGTTTGTAGTCATTGT 60.032 45.455 0.00 0.00 0.00 2.71
325 326 2.616376 TGCAGCGTTTGTAGTCATTGTT 59.384 40.909 0.00 0.00 0.00 2.83
326 327 3.226347 GCAGCGTTTGTAGTCATTGTTC 58.774 45.455 0.00 0.00 0.00 3.18
327 328 3.469629 CAGCGTTTGTAGTCATTGTTCG 58.530 45.455 0.00 0.00 0.00 3.95
328 329 3.059868 CAGCGTTTGTAGTCATTGTTCGT 60.060 43.478 0.00 0.00 0.00 3.85
329 330 3.558418 AGCGTTTGTAGTCATTGTTCGTT 59.442 39.130 0.00 0.00 0.00 3.85
330 331 3.657625 GCGTTTGTAGTCATTGTTCGTTG 59.342 43.478 0.00 0.00 0.00 4.10
331 332 4.784079 GCGTTTGTAGTCATTGTTCGTTGT 60.784 41.667 0.00 0.00 0.00 3.32
332 333 5.556758 GCGTTTGTAGTCATTGTTCGTTGTA 60.557 40.000 0.00 0.00 0.00 2.41
333 334 6.586751 CGTTTGTAGTCATTGTTCGTTGTAT 58.413 36.000 0.00 0.00 0.00 2.29
334 335 7.067116 CGTTTGTAGTCATTGTTCGTTGTATT 58.933 34.615 0.00 0.00 0.00 1.89
335 336 7.057903 CGTTTGTAGTCATTGTTCGTTGTATTG 59.942 37.037 0.00 0.00 0.00 1.90
336 337 5.922546 TGTAGTCATTGTTCGTTGTATTGC 58.077 37.500 0.00 0.00 0.00 3.56
337 338 4.419522 AGTCATTGTTCGTTGTATTGCC 57.580 40.909 0.00 0.00 0.00 4.52
338 339 3.120338 AGTCATTGTTCGTTGTATTGCCG 60.120 43.478 0.00 0.00 0.00 5.69
339 340 2.809119 TCATTGTTCGTTGTATTGCCGT 59.191 40.909 0.00 0.00 0.00 5.68
340 341 2.672188 TTGTTCGTTGTATTGCCGTG 57.328 45.000 0.00 0.00 0.00 4.94
341 342 1.867166 TGTTCGTTGTATTGCCGTGA 58.133 45.000 0.00 0.00 0.00 4.35
342 343 2.418692 TGTTCGTTGTATTGCCGTGAT 58.581 42.857 0.00 0.00 0.00 3.06
343 344 2.809119 TGTTCGTTGTATTGCCGTGATT 59.191 40.909 0.00 0.00 0.00 2.57
344 345 3.160545 GTTCGTTGTATTGCCGTGATTG 58.839 45.455 0.00 0.00 0.00 2.67
345 346 1.735018 TCGTTGTATTGCCGTGATTGG 59.265 47.619 0.00 0.00 0.00 3.16
346 347 1.202132 CGTTGTATTGCCGTGATTGGG 60.202 52.381 0.00 0.00 0.00 4.12
353 354 2.438434 CCGTGATTGGGCAGGGAC 60.438 66.667 0.00 0.00 44.47 4.46
354 355 2.819595 CGTGATTGGGCAGGGACG 60.820 66.667 0.00 0.00 0.00 4.79
355 356 2.438434 GTGATTGGGCAGGGACGG 60.438 66.667 0.00 0.00 0.00 4.79
356 357 2.933287 TGATTGGGCAGGGACGGT 60.933 61.111 0.00 0.00 0.00 4.83
357 358 2.438434 GATTGGGCAGGGACGGTG 60.438 66.667 0.00 0.00 0.00 4.94
358 359 3.995506 GATTGGGCAGGGACGGTGG 62.996 68.421 0.00 0.00 0.00 4.61
364 365 2.606519 CAGGGACGGTGGGGAGAA 60.607 66.667 0.00 0.00 0.00 2.87
365 366 2.206036 AGGGACGGTGGGGAGAAA 59.794 61.111 0.00 0.00 0.00 2.52
366 367 1.229853 AGGGACGGTGGGGAGAAAT 60.230 57.895 0.00 0.00 0.00 2.17
367 368 1.077716 GGGACGGTGGGGAGAAATG 60.078 63.158 0.00 0.00 0.00 2.32
368 369 1.559065 GGGACGGTGGGGAGAAATGA 61.559 60.000 0.00 0.00 0.00 2.57
369 370 0.107654 GGACGGTGGGGAGAAATGAG 60.108 60.000 0.00 0.00 0.00 2.90
370 371 0.107654 GACGGTGGGGAGAAATGAGG 60.108 60.000 0.00 0.00 0.00 3.86
371 372 1.224592 CGGTGGGGAGAAATGAGGG 59.775 63.158 0.00 0.00 0.00 4.30
372 373 1.076705 GGTGGGGAGAAATGAGGGC 60.077 63.158 0.00 0.00 0.00 5.19
373 374 1.575447 GGTGGGGAGAAATGAGGGCT 61.575 60.000 0.00 0.00 0.00 5.19
374 375 1.213296 GTGGGGAGAAATGAGGGCTA 58.787 55.000 0.00 0.00 0.00 3.93
375 376 1.134068 GTGGGGAGAAATGAGGGCTAC 60.134 57.143 0.00 0.00 0.00 3.58
376 377 0.106894 GGGGAGAAATGAGGGCTACG 59.893 60.000 0.00 0.00 0.00 3.51
377 378 1.120530 GGGAGAAATGAGGGCTACGA 58.879 55.000 0.00 0.00 0.00 3.43
378 379 1.069358 GGGAGAAATGAGGGCTACGAG 59.931 57.143 0.00 0.00 0.00 4.18
379 380 1.069358 GGAGAAATGAGGGCTACGAGG 59.931 57.143 0.00 0.00 0.00 4.63
380 381 1.069358 GAGAAATGAGGGCTACGAGGG 59.931 57.143 0.00 0.00 0.00 4.30
381 382 0.106894 GAAATGAGGGCTACGAGGGG 59.893 60.000 0.00 0.00 0.00 4.79
382 383 0.326238 AAATGAGGGCTACGAGGGGA 60.326 55.000 0.00 0.00 0.00 4.81
383 384 0.326238 AATGAGGGCTACGAGGGGAA 60.326 55.000 0.00 0.00 0.00 3.97
384 385 0.760945 ATGAGGGCTACGAGGGGAAG 60.761 60.000 0.00 0.00 0.00 3.46
385 386 2.041819 AGGGCTACGAGGGGAAGG 60.042 66.667 0.00 0.00 0.00 3.46
386 387 3.162154 GGGCTACGAGGGGAAGGG 61.162 72.222 0.00 0.00 0.00 3.95
387 388 3.162154 GGCTACGAGGGGAAGGGG 61.162 72.222 0.00 0.00 0.00 4.79
388 389 2.042230 GCTACGAGGGGAAGGGGA 60.042 66.667 0.00 0.00 0.00 4.81
389 390 2.433146 GCTACGAGGGGAAGGGGAC 61.433 68.421 0.00 0.00 0.00 4.46
390 391 2.043652 TACGAGGGGAAGGGGACG 60.044 66.667 0.00 0.00 0.00 4.79
391 392 3.667217 TACGAGGGGAAGGGGACGG 62.667 68.421 0.00 0.00 0.00 4.79
396 397 4.735599 GGGAAGGGGACGGGGAGT 62.736 72.222 0.00 0.00 0.00 3.85
397 398 3.400054 GGAAGGGGACGGGGAGTG 61.400 72.222 0.00 0.00 0.00 3.51
398 399 3.400054 GAAGGGGACGGGGAGTGG 61.400 72.222 0.00 0.00 0.00 4.00
406 407 4.733725 CGGGGAGTGGGAGGGGAA 62.734 72.222 0.00 0.00 0.00 3.97
407 408 2.204244 GGGGAGTGGGAGGGGAAA 60.204 66.667 0.00 0.00 0.00 3.13
408 409 1.855451 GGGGAGTGGGAGGGGAAAA 60.855 63.158 0.00 0.00 0.00 2.29
409 410 1.440362 GGGGAGTGGGAGGGGAAAAA 61.440 60.000 0.00 0.00 0.00 1.94
433 434 7.751768 AAAAGAGGAAGGAAAAGTGTGATAG 57.248 36.000 0.00 0.00 0.00 2.08
434 435 5.428184 AGAGGAAGGAAAAGTGTGATAGG 57.572 43.478 0.00 0.00 0.00 2.57
435 436 4.226168 AGAGGAAGGAAAAGTGTGATAGGG 59.774 45.833 0.00 0.00 0.00 3.53
436 437 3.267031 AGGAAGGAAAAGTGTGATAGGGG 59.733 47.826 0.00 0.00 0.00 4.79
437 438 3.010250 GGAAGGAAAAGTGTGATAGGGGT 59.990 47.826 0.00 0.00 0.00 4.95
438 439 4.508584 GGAAGGAAAAGTGTGATAGGGGTT 60.509 45.833 0.00 0.00 0.00 4.11
439 440 4.741928 AGGAAAAGTGTGATAGGGGTTT 57.258 40.909 0.00 0.00 0.00 3.27
440 441 5.074746 AGGAAAAGTGTGATAGGGGTTTT 57.925 39.130 0.00 0.00 0.00 2.43
441 442 5.077564 AGGAAAAGTGTGATAGGGGTTTTC 58.922 41.667 0.00 0.00 34.56 2.29
442 443 4.830600 GGAAAAGTGTGATAGGGGTTTTCA 59.169 41.667 0.00 0.00 36.20 2.69
443 444 5.480422 GGAAAAGTGTGATAGGGGTTTTCAT 59.520 40.000 0.00 0.00 36.20 2.57
444 445 6.014584 GGAAAAGTGTGATAGGGGTTTTCATT 60.015 38.462 0.00 0.00 36.20 2.57
445 446 7.177744 GGAAAAGTGTGATAGGGGTTTTCATTA 59.822 37.037 0.00 0.00 36.20 1.90
446 447 8.485578 AAAAGTGTGATAGGGGTTTTCATTAA 57.514 30.769 0.00 0.00 0.00 1.40
447 448 8.485578 AAAGTGTGATAGGGGTTTTCATTAAA 57.514 30.769 0.00 0.00 0.00 1.52
448 449 8.485578 AAGTGTGATAGGGGTTTTCATTAAAA 57.514 30.769 0.00 0.00 32.15 1.52
449 450 8.485578 AGTGTGATAGGGGTTTTCATTAAAAA 57.514 30.769 0.00 0.00 36.37 1.94
472 473 4.472701 TCCGGTTGGGAGTAGCAT 57.527 55.556 0.00 0.00 40.94 3.79
473 474 2.691663 TCCGGTTGGGAGTAGCATT 58.308 52.632 0.00 0.00 40.94 3.56
474 475 0.988832 TCCGGTTGGGAGTAGCATTT 59.011 50.000 0.00 0.00 40.94 2.32
475 476 1.065709 TCCGGTTGGGAGTAGCATTTC 60.066 52.381 0.00 0.00 40.94 2.17
476 477 1.065418 CCGGTTGGGAGTAGCATTTCT 60.065 52.381 0.00 0.00 38.47 2.52
477 478 2.280628 CGGTTGGGAGTAGCATTTCTC 58.719 52.381 0.00 0.00 0.00 2.87
478 479 2.093447 CGGTTGGGAGTAGCATTTCTCT 60.093 50.000 0.00 0.00 0.00 3.10
479 480 3.619979 CGGTTGGGAGTAGCATTTCTCTT 60.620 47.826 0.00 0.00 0.00 2.85
480 481 4.382685 CGGTTGGGAGTAGCATTTCTCTTA 60.383 45.833 0.00 0.00 0.00 2.10
481 482 5.497474 GGTTGGGAGTAGCATTTCTCTTAA 58.503 41.667 0.00 0.00 0.00 1.85
482 483 5.354513 GGTTGGGAGTAGCATTTCTCTTAAC 59.645 44.000 0.00 0.00 0.00 2.01
483 484 5.099042 TGGGAGTAGCATTTCTCTTAACC 57.901 43.478 0.00 0.00 0.00 2.85
484 485 4.534500 TGGGAGTAGCATTTCTCTTAACCA 59.466 41.667 0.00 0.00 0.00 3.67
485 486 5.013704 TGGGAGTAGCATTTCTCTTAACCAA 59.986 40.000 0.00 0.00 0.00 3.67
486 487 5.944007 GGGAGTAGCATTTCTCTTAACCAAA 59.056 40.000 0.00 0.00 0.00 3.28
487 488 6.603599 GGGAGTAGCATTTCTCTTAACCAAAT 59.396 38.462 0.00 0.00 0.00 2.32
488 489 7.415653 GGGAGTAGCATTTCTCTTAACCAAATG 60.416 40.741 0.00 0.00 39.52 2.32
489 490 7.336931 GGAGTAGCATTTCTCTTAACCAAATGA 59.663 37.037 7.61 0.00 39.06 2.57
490 491 8.273780 AGTAGCATTTCTCTTAACCAAATGAG 57.726 34.615 7.61 0.00 39.06 2.90
491 492 5.958955 AGCATTTCTCTTAACCAAATGAGC 58.041 37.500 7.61 0.00 39.06 4.26
492 493 5.477984 AGCATTTCTCTTAACCAAATGAGCA 59.522 36.000 7.61 0.00 39.06 4.26
493 494 6.154021 AGCATTTCTCTTAACCAAATGAGCAT 59.846 34.615 7.61 0.00 39.06 3.79
494 495 6.255020 GCATTTCTCTTAACCAAATGAGCATG 59.745 38.462 7.61 0.00 39.06 4.06
495 496 7.541162 CATTTCTCTTAACCAAATGAGCATGA 58.459 34.615 0.00 0.00 39.06 3.07
496 497 6.500684 TTCTCTTAACCAAATGAGCATGAC 57.499 37.500 0.00 0.00 0.00 3.06
497 498 5.809001 TCTCTTAACCAAATGAGCATGACT 58.191 37.500 0.00 0.00 0.00 3.41
498 499 6.240894 TCTCTTAACCAAATGAGCATGACTT 58.759 36.000 0.00 0.00 0.00 3.01
499 500 6.149973 TCTCTTAACCAAATGAGCATGACTTG 59.850 38.462 0.00 0.00 0.00 3.16
519 520 0.103208 CCGTCATACTCTGCCAGACC 59.897 60.000 0.00 0.00 0.00 3.85
533 534 5.190528 TCTGCCAGACCAAGAGAAGATTATT 59.809 40.000 0.00 0.00 0.00 1.40
534 535 6.384015 TCTGCCAGACCAAGAGAAGATTATTA 59.616 38.462 0.00 0.00 0.00 0.98
535 536 7.071698 TCTGCCAGACCAAGAGAAGATTATTAT 59.928 37.037 0.00 0.00 0.00 1.28
538 539 7.936301 GCCAGACCAAGAGAAGATTATTATTCT 59.064 37.037 0.00 0.00 38.46 2.40
719 720 2.174639 TGTCATCAGGGTCACCAACTTT 59.825 45.455 0.00 0.00 40.13 2.66
757 758 6.089551 GTGCTATATATAACAGCAGTTCACGG 59.910 42.308 18.02 0.00 45.41 4.94
936 943 1.226888 GAAGTTCTATCCGCCGCGT 60.227 57.895 12.58 0.00 0.00 6.01
1098 1105 3.079478 TCCCTCTGCATCTGCGCT 61.079 61.111 9.73 0.00 45.83 5.92
1102 1109 1.226802 CTCTGCATCTGCGCTACGT 60.227 57.895 9.73 0.00 45.83 3.57
1108 1115 0.917259 CATCTGCGCTACGTCTTCAC 59.083 55.000 9.73 0.00 0.00 3.18
1139 1146 0.745486 TCACAGCCGGCATCAATGAG 60.745 55.000 31.54 16.27 0.00 2.90
1148 1155 0.945813 GCATCAATGAGCCTCTCAGC 59.054 55.000 2.85 0.00 44.08 4.26
1149 1156 1.595466 CATCAATGAGCCTCTCAGCC 58.405 55.000 2.85 0.00 44.08 4.85
1150 1157 1.134189 CATCAATGAGCCTCTCAGCCA 60.134 52.381 2.85 0.00 44.08 4.75
1156 1163 0.034670 GAGCCTCTCAGCCACCAAAT 60.035 55.000 0.00 0.00 0.00 2.32
1161 1168 0.038166 TCTCAGCCACCAAATCACCC 59.962 55.000 0.00 0.00 0.00 4.61
1198 1205 1.079490 ACCTCACCTTCTCCATCTCCA 59.921 52.381 0.00 0.00 0.00 3.86
1200 1207 2.182827 CTCACCTTCTCCATCTCCACA 58.817 52.381 0.00 0.00 0.00 4.17
1218 1225 1.226888 AAACTACCGCGAGCCGATC 60.227 57.895 8.23 0.00 40.02 3.69
1402 1409 4.728110 ATGGCGGCAGCTTCAGCA 62.728 61.111 19.29 0.00 45.16 4.41
1500 1507 0.902516 GCCTGGACTCACTGAGGACT 60.903 60.000 10.86 0.00 33.35 3.85
1558 1565 1.298157 CCTCGTCAAAATGCTCGGCA 61.298 55.000 1.01 1.01 44.86 5.69
1599 1606 0.173255 TGCAGACGATGAATCTCGCA 59.827 50.000 0.00 0.00 42.35 5.10
1626 1633 1.953138 CTGGATGGTCGAGATGCGC 60.953 63.158 0.00 0.00 40.61 6.09
1887 1894 5.615925 AGGTGGATAACATAAGGTCAGTC 57.384 43.478 0.00 0.00 0.00 3.51
1894 1901 7.068962 TGGATAACATAAGGTCAGTCGTATTCA 59.931 37.037 0.00 0.00 0.00 2.57
1895 1902 7.381678 GGATAACATAAGGTCAGTCGTATTCAC 59.618 40.741 0.00 0.00 0.00 3.18
1896 1903 5.654603 ACATAAGGTCAGTCGTATTCACA 57.345 39.130 0.00 0.00 0.00 3.58
1897 1904 6.222038 ACATAAGGTCAGTCGTATTCACAT 57.778 37.500 0.00 0.00 0.00 3.21
1898 1905 7.342769 ACATAAGGTCAGTCGTATTCACATA 57.657 36.000 0.00 0.00 0.00 2.29
1899 1906 7.952671 ACATAAGGTCAGTCGTATTCACATAT 58.047 34.615 0.00 0.00 0.00 1.78
1900 1907 9.074576 ACATAAGGTCAGTCGTATTCACATATA 57.925 33.333 0.00 0.00 0.00 0.86
1901 1908 9.343103 CATAAGGTCAGTCGTATTCACATATAC 57.657 37.037 0.00 0.00 0.00 1.47
1902 1909 6.954487 AGGTCAGTCGTATTCACATATACA 57.046 37.500 0.00 0.00 31.80 2.29
1903 1910 6.971602 AGGTCAGTCGTATTCACATATACAG 58.028 40.000 0.00 0.00 31.80 2.74
1904 1911 6.771267 AGGTCAGTCGTATTCACATATACAGA 59.229 38.462 0.00 0.00 31.80 3.41
1905 1912 7.448777 AGGTCAGTCGTATTCACATATACAGAT 59.551 37.037 0.00 0.00 31.80 2.90
2049 2057 3.219645 AAATGCCAACAACGCCGGG 62.220 57.895 2.18 0.00 0.00 5.73
2881 2890 4.680537 AGGACCGCTCACCCGAGT 62.681 66.667 0.00 0.00 41.71 4.18
3613 3623 4.901197 TCAGTTAAGATACTGCCAACCA 57.099 40.909 0.00 0.00 44.10 3.67
4002 4012 2.949447 ACCTTGAACTGGTTTCTGCAT 58.051 42.857 0.00 0.00 33.34 3.96
4140 4150 0.108851 GCGGAATCATTTTTGCCCGT 60.109 50.000 0.00 0.00 39.18 5.28
4218 4228 2.044793 TGGACTGGGAAATCAGAGGT 57.955 50.000 0.00 0.00 38.11 3.85
4290 4300 2.229784 GACAAGGTGGCTTGAATTCAGG 59.770 50.000 12.97 12.97 37.72 3.86
4320 4330 3.634910 TGCAACTTCCCCTTACAAAGTTC 59.365 43.478 0.00 0.00 40.32 3.01
4362 4372 8.562892 AGTATTTCAAATGATGTGTATAGCAGC 58.437 33.333 0.00 0.00 0.00 5.25
4515 4525 4.919677 CGCAAGTCCTTTTTGTTTTTGT 57.080 36.364 0.00 0.00 0.00 2.83
4517 4527 5.684850 CGCAAGTCCTTTTTGTTTTTGTTT 58.315 33.333 0.00 0.00 0.00 2.83
4519 4529 6.634837 CGCAAGTCCTTTTTGTTTTTGTTTTT 59.365 30.769 0.00 0.00 0.00 1.94
4644 4939 8.311109 ACTTGAGTTCAACCAAACAAATAAAGT 58.689 29.630 0.00 0.00 0.00 2.66
4652 4947 7.928706 TCAACCAAACAAATAAAGTAACATGGG 59.071 33.333 0.00 0.00 0.00 4.00
4676 4971 7.416777 GGGCAGCAAAGTAAGCTCTTTAAATAT 60.417 37.037 0.43 0.00 41.14 1.28
4677 4972 7.433425 GGCAGCAAAGTAAGCTCTTTAAATATG 59.567 37.037 0.43 0.00 41.14 1.78
4791 5211 7.296628 TGAAAACCATAAATGCCTACAAAGT 57.703 32.000 0.00 0.00 0.00 2.66
5144 5593 3.614616 CCTAGACTTGTCGATGCAAAGTC 59.385 47.826 16.91 16.91 32.23 3.01
5174 5623 2.116772 ACTTGGCCATGTGCTGCT 59.883 55.556 22.61 0.00 40.92 4.24
5230 5681 1.395045 CCCTGTAGCGGAGATGCTGA 61.395 60.000 0.00 0.00 46.70 4.26
5241 5692 6.058183 AGCGGAGATGCTGAAATATAAACTT 58.942 36.000 0.00 0.00 45.28 2.66
5281 5732 8.097038 GCAAAGATCACCAGGTATGATAGATTA 58.903 37.037 0.00 0.00 36.92 1.75
5321 5773 2.627699 TCCTGGTGAATGAAACAAAGCC 59.372 45.455 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.291877 CCGTGGAGTACTTGCTGTGC 61.292 60.000 0.00 0.00 0.00 4.57
1 2 1.291877 GCCGTGGAGTACTTGCTGTG 61.292 60.000 0.00 0.00 0.00 3.66
2 3 1.004918 GCCGTGGAGTACTTGCTGT 60.005 57.895 0.00 0.00 0.00 4.40
3 4 0.602638 TTGCCGTGGAGTACTTGCTG 60.603 55.000 0.00 0.00 0.00 4.41
4 5 0.324943 ATTGCCGTGGAGTACTTGCT 59.675 50.000 0.00 0.00 0.00 3.91
5 6 1.165270 AATTGCCGTGGAGTACTTGC 58.835 50.000 0.00 0.00 0.00 4.01
6 7 5.560966 AAATAATTGCCGTGGAGTACTTG 57.439 39.130 0.00 0.00 0.00 3.16
7 8 6.093082 GTGTAAATAATTGCCGTGGAGTACTT 59.907 38.462 0.00 0.00 0.00 2.24
8 9 5.583457 GTGTAAATAATTGCCGTGGAGTACT 59.417 40.000 0.00 0.00 0.00 2.73
9 10 5.352016 TGTGTAAATAATTGCCGTGGAGTAC 59.648 40.000 0.00 0.00 0.00 2.73
10 11 5.489249 TGTGTAAATAATTGCCGTGGAGTA 58.511 37.500 0.00 0.00 0.00 2.59
11 12 4.328536 TGTGTAAATAATTGCCGTGGAGT 58.671 39.130 0.00 0.00 0.00 3.85
12 13 4.201910 CCTGTGTAAATAATTGCCGTGGAG 60.202 45.833 0.00 0.00 0.00 3.86
13 14 3.692101 CCTGTGTAAATAATTGCCGTGGA 59.308 43.478 0.00 0.00 0.00 4.02
14 15 3.692101 TCCTGTGTAAATAATTGCCGTGG 59.308 43.478 0.00 0.00 0.00 4.94
15 16 4.394920 ACTCCTGTGTAAATAATTGCCGTG 59.605 41.667 0.00 0.00 0.00 4.94
16 17 4.585879 ACTCCTGTGTAAATAATTGCCGT 58.414 39.130 0.00 0.00 0.00 5.68
17 18 5.583061 TGTACTCCTGTGTAAATAATTGCCG 59.417 40.000 0.00 0.00 0.00 5.69
18 19 6.183360 GGTGTACTCCTGTGTAAATAATTGCC 60.183 42.308 6.72 0.00 0.00 4.52
19 20 6.598064 AGGTGTACTCCTGTGTAAATAATTGC 59.402 38.462 15.63 0.00 36.35 3.56
20 21 9.832445 ATAGGTGTACTCCTGTGTAAATAATTG 57.168 33.333 23.73 0.00 38.41 2.32
25 26 9.832445 CAAATATAGGTGTACTCCTGTGTAAAT 57.168 33.333 23.73 12.01 38.41 1.40
26 27 8.818860 ACAAATATAGGTGTACTCCTGTGTAAA 58.181 33.333 23.73 5.63 38.41 2.01
27 28 8.370266 ACAAATATAGGTGTACTCCTGTGTAA 57.630 34.615 23.73 6.32 38.41 2.41
28 29 7.966339 ACAAATATAGGTGTACTCCTGTGTA 57.034 36.000 23.73 14.62 38.41 2.90
29 30 6.869206 ACAAATATAGGTGTACTCCTGTGT 57.131 37.500 23.73 14.19 38.41 3.72
30 31 8.234136 TCTACAAATATAGGTGTACTCCTGTG 57.766 38.462 23.73 15.56 38.41 3.66
31 32 7.014422 GCTCTACAAATATAGGTGTACTCCTGT 59.986 40.741 23.73 19.87 38.41 4.00
32 33 7.014326 TGCTCTACAAATATAGGTGTACTCCTG 59.986 40.741 23.73 11.01 38.41 3.86
33 34 7.067421 TGCTCTACAAATATAGGTGTACTCCT 58.933 38.462 19.80 19.80 41.20 3.69
34 35 7.014422 ACTGCTCTACAAATATAGGTGTACTCC 59.986 40.741 5.81 5.81 0.00 3.85
35 36 7.942990 ACTGCTCTACAAATATAGGTGTACTC 58.057 38.462 0.00 0.00 0.00 2.59
36 37 7.899648 ACTGCTCTACAAATATAGGTGTACT 57.100 36.000 0.00 0.00 0.00 2.73
37 38 8.848182 AGTACTGCTCTACAAATATAGGTGTAC 58.152 37.037 0.00 0.00 0.00 2.90
38 39 8.991783 AGTACTGCTCTACAAATATAGGTGTA 57.008 34.615 0.00 0.00 0.00 2.90
39 40 7.014422 GGAGTACTGCTCTACAAATATAGGTGT 59.986 40.741 7.20 0.00 43.62 4.16
40 41 7.231722 AGGAGTACTGCTCTACAAATATAGGTG 59.768 40.741 11.67 0.00 43.62 4.00
41 42 7.299134 AGGAGTACTGCTCTACAAATATAGGT 58.701 38.462 11.67 0.00 43.62 3.08
42 43 7.768807 AGGAGTACTGCTCTACAAATATAGG 57.231 40.000 11.67 0.00 43.62 2.57
51 52 9.575783 GCAAATAATATAGGAGTACTGCTCTAC 57.424 37.037 21.25 0.00 43.62 2.59
52 53 9.309224 TGCAAATAATATAGGAGTACTGCTCTA 57.691 33.333 21.25 15.56 43.62 2.43
53 54 8.091449 GTGCAAATAATATAGGAGTACTGCTCT 58.909 37.037 21.25 13.73 43.62 4.09
54 55 7.872993 TGTGCAAATAATATAGGAGTACTGCTC 59.127 37.037 21.25 2.91 43.39 4.26
55 56 7.735917 TGTGCAAATAATATAGGAGTACTGCT 58.264 34.615 21.35 21.35 34.87 4.24
56 57 7.118390 CCTGTGCAAATAATATAGGAGTACTGC 59.882 40.741 6.22 6.22 0.00 4.40
57 58 8.367911 TCCTGTGCAAATAATATAGGAGTACTG 58.632 37.037 0.00 0.00 29.76 2.74
58 59 8.492415 TCCTGTGCAAATAATATAGGAGTACT 57.508 34.615 0.00 0.00 29.76 2.73
59 60 8.585881 TCTCCTGTGCAAATAATATAGGAGTAC 58.414 37.037 14.85 0.00 45.03 2.73
60 61 8.721133 TCTCCTGTGCAAATAATATAGGAGTA 57.279 34.615 14.85 2.62 45.03 2.59
61 62 7.618019 TCTCCTGTGCAAATAATATAGGAGT 57.382 36.000 14.85 0.00 45.03 3.85
62 63 9.512588 AATTCTCCTGTGCAAATAATATAGGAG 57.487 33.333 10.36 10.36 45.70 3.69
63 64 9.866655 AAATTCTCCTGTGCAAATAATATAGGA 57.133 29.630 0.00 0.00 31.94 2.94
69 70 7.765819 GCCTTAAAATTCTCCTGTGCAAATAAT 59.234 33.333 0.00 0.00 0.00 1.28
70 71 7.096551 GCCTTAAAATTCTCCTGTGCAAATAA 58.903 34.615 0.00 0.00 0.00 1.40
71 72 6.210385 TGCCTTAAAATTCTCCTGTGCAAATA 59.790 34.615 0.00 0.00 0.00 1.40
72 73 5.011943 TGCCTTAAAATTCTCCTGTGCAAAT 59.988 36.000 0.00 0.00 0.00 2.32
73 74 4.343526 TGCCTTAAAATTCTCCTGTGCAAA 59.656 37.500 0.00 0.00 0.00 3.68
74 75 3.894427 TGCCTTAAAATTCTCCTGTGCAA 59.106 39.130 0.00 0.00 0.00 4.08
75 76 3.495331 TGCCTTAAAATTCTCCTGTGCA 58.505 40.909 0.00 0.00 0.00 4.57
76 77 4.400567 AGATGCCTTAAAATTCTCCTGTGC 59.599 41.667 0.00 0.00 0.00 4.57
77 78 7.630242 TTAGATGCCTTAAAATTCTCCTGTG 57.370 36.000 0.00 0.00 0.00 3.66
78 79 8.829373 ATTTAGATGCCTTAAAATTCTCCTGT 57.171 30.769 0.00 0.00 0.00 4.00
100 101 9.676195 GTGCAAAAACATTTTAGGCAAATATTT 57.324 25.926 14.32 0.00 40.12 1.40
101 102 8.844244 TGTGCAAAAACATTTTAGGCAAATATT 58.156 25.926 14.32 0.00 40.12 1.28
102 103 8.288913 GTGTGCAAAAACATTTTAGGCAAATAT 58.711 29.630 14.32 0.00 40.12 1.28
103 104 7.280876 TGTGTGCAAAAACATTTTAGGCAAATA 59.719 29.630 14.32 7.93 40.12 1.40
104 105 6.094603 TGTGTGCAAAAACATTTTAGGCAAAT 59.905 30.769 14.32 0.00 40.12 2.32
105 106 5.412594 TGTGTGCAAAAACATTTTAGGCAAA 59.587 32.000 14.32 9.11 40.12 3.68
106 107 4.937620 TGTGTGCAAAAACATTTTAGGCAA 59.062 33.333 14.32 6.34 40.12 4.52
107 108 4.507710 TGTGTGCAAAAACATTTTAGGCA 58.492 34.783 10.56 10.56 37.87 4.75
108 109 5.476752 TTGTGTGCAAAAACATTTTAGGC 57.523 34.783 0.00 6.68 33.69 3.93
109 110 5.814705 TCCTTGTGTGCAAAAACATTTTAGG 59.185 36.000 0.00 0.00 33.73 2.69
110 111 6.900568 TCCTTGTGTGCAAAAACATTTTAG 57.099 33.333 0.00 0.00 33.73 1.85
111 112 7.672983 TTTCCTTGTGTGCAAAAACATTTTA 57.327 28.000 0.00 0.00 33.73 1.52
112 113 6.566197 TTTCCTTGTGTGCAAAAACATTTT 57.434 29.167 0.00 0.00 33.73 1.82
113 114 6.377780 GTTTTCCTTGTGTGCAAAAACATTT 58.622 32.000 13.21 0.00 33.73 2.32
114 115 5.106357 GGTTTTCCTTGTGTGCAAAAACATT 60.106 36.000 17.67 0.00 36.94 2.71
115 116 4.394610 GGTTTTCCTTGTGTGCAAAAACAT 59.605 37.500 17.67 0.00 36.94 2.71
116 117 3.748568 GGTTTTCCTTGTGTGCAAAAACA 59.251 39.130 17.67 8.13 36.94 2.83
117 118 3.748568 TGGTTTTCCTTGTGTGCAAAAAC 59.251 39.130 10.71 10.71 41.38 2.43
118 119 4.008074 TGGTTTTCCTTGTGTGCAAAAA 57.992 36.364 0.00 0.00 41.38 1.94
119 120 3.685139 TGGTTTTCCTTGTGTGCAAAA 57.315 38.095 0.00 0.00 41.38 2.44
120 121 3.685139 TTGGTTTTCCTTGTGTGCAAA 57.315 38.095 0.00 0.00 41.38 3.68
121 122 3.685139 TTTGGTTTTCCTTGTGTGCAA 57.315 38.095 0.00 0.00 41.38 4.08
122 123 3.902881 ATTTGGTTTTCCTTGTGTGCA 57.097 38.095 0.00 0.00 41.38 4.57
123 124 3.938334 ACAATTTGGTTTTCCTTGTGTGC 59.062 39.130 0.78 0.00 41.38 4.57
124 125 6.035542 GTGTACAATTTGGTTTTCCTTGTGTG 59.964 38.462 0.00 0.00 36.80 3.82
125 126 6.103330 GTGTACAATTTGGTTTTCCTTGTGT 58.897 36.000 0.00 0.00 36.80 3.72
126 127 5.522097 GGTGTACAATTTGGTTTTCCTTGTG 59.478 40.000 0.00 0.00 36.80 3.33
127 128 5.423931 AGGTGTACAATTTGGTTTTCCTTGT 59.576 36.000 0.00 0.00 38.69 3.16
128 129 5.912892 AGGTGTACAATTTGGTTTTCCTTG 58.087 37.500 0.00 0.00 41.38 3.61
129 130 7.849322 ATAGGTGTACAATTTGGTTTTCCTT 57.151 32.000 0.00 0.00 41.38 3.36
130 131 8.168058 AGTATAGGTGTACAATTTGGTTTTCCT 58.832 33.333 0.00 0.00 41.38 3.36
131 132 8.344446 AGTATAGGTGTACAATTTGGTTTTCC 57.656 34.615 0.00 0.00 41.14 3.13
132 133 9.836076 GAAGTATAGGTGTACAATTTGGTTTTC 57.164 33.333 0.00 0.00 0.00 2.29
133 134 9.582648 AGAAGTATAGGTGTACAATTTGGTTTT 57.417 29.630 0.00 0.00 0.00 2.43
134 135 9.227777 GAGAAGTATAGGTGTACAATTTGGTTT 57.772 33.333 0.00 0.00 0.00 3.27
135 136 7.827729 GGAGAAGTATAGGTGTACAATTTGGTT 59.172 37.037 0.00 0.00 0.00 3.67
136 137 7.037873 TGGAGAAGTATAGGTGTACAATTTGGT 60.038 37.037 0.00 0.00 0.00 3.67
137 138 7.335627 TGGAGAAGTATAGGTGTACAATTTGG 58.664 38.462 0.00 0.00 0.00 3.28
138 139 7.011482 GCTGGAGAAGTATAGGTGTACAATTTG 59.989 40.741 0.00 0.00 0.00 2.32
139 140 7.048512 GCTGGAGAAGTATAGGTGTACAATTT 58.951 38.462 0.00 0.00 0.00 1.82
140 141 6.156256 TGCTGGAGAAGTATAGGTGTACAATT 59.844 38.462 0.00 0.00 0.00 2.32
141 142 5.661312 TGCTGGAGAAGTATAGGTGTACAAT 59.339 40.000 0.00 0.00 0.00 2.71
142 143 5.020795 TGCTGGAGAAGTATAGGTGTACAA 58.979 41.667 0.00 0.00 0.00 2.41
143 144 4.401519 GTGCTGGAGAAGTATAGGTGTACA 59.598 45.833 0.00 0.00 0.00 2.90
144 145 4.401519 TGTGCTGGAGAAGTATAGGTGTAC 59.598 45.833 0.00 0.00 0.00 2.90
145 146 4.606210 TGTGCTGGAGAAGTATAGGTGTA 58.394 43.478 0.00 0.00 0.00 2.90
146 147 3.441101 TGTGCTGGAGAAGTATAGGTGT 58.559 45.455 0.00 0.00 0.00 4.16
147 148 4.184629 GTTGTGCTGGAGAAGTATAGGTG 58.815 47.826 0.00 0.00 0.00 4.00
148 149 3.119101 CGTTGTGCTGGAGAAGTATAGGT 60.119 47.826 0.00 0.00 0.00 3.08
149 150 3.130516 TCGTTGTGCTGGAGAAGTATAGG 59.869 47.826 0.00 0.00 0.00 2.57
150 151 4.142359 ACTCGTTGTGCTGGAGAAGTATAG 60.142 45.833 0.00 0.00 0.00 1.31
151 152 3.762288 ACTCGTTGTGCTGGAGAAGTATA 59.238 43.478 0.00 0.00 0.00 1.47
152 153 2.563179 ACTCGTTGTGCTGGAGAAGTAT 59.437 45.455 0.00 0.00 0.00 2.12
153 154 1.961394 ACTCGTTGTGCTGGAGAAGTA 59.039 47.619 0.00 0.00 0.00 2.24
154 155 0.753262 ACTCGTTGTGCTGGAGAAGT 59.247 50.000 0.00 0.00 0.00 3.01
155 156 2.029828 AGTACTCGTTGTGCTGGAGAAG 60.030 50.000 0.00 0.00 40.11 2.85
156 157 1.961394 AGTACTCGTTGTGCTGGAGAA 59.039 47.619 0.00 0.00 40.11 2.87
157 158 1.540267 GAGTACTCGTTGTGCTGGAGA 59.460 52.381 7.22 0.00 41.66 3.71
158 159 1.402984 GGAGTACTCGTTGTGCTGGAG 60.403 57.143 16.56 0.00 41.66 3.86
159 160 0.601558 GGAGTACTCGTTGTGCTGGA 59.398 55.000 16.56 0.00 41.66 3.86
160 161 0.317160 TGGAGTACTCGTTGTGCTGG 59.683 55.000 16.56 0.00 41.66 4.85
161 162 2.061773 CTTGGAGTACTCGTTGTGCTG 58.938 52.381 16.56 0.00 41.66 4.41
162 163 1.687123 ACTTGGAGTACTCGTTGTGCT 59.313 47.619 16.56 2.38 44.25 4.40
163 164 2.059541 GACTTGGAGTACTCGTTGTGC 58.940 52.381 16.56 2.38 0.00 4.57
164 165 3.644884 AGACTTGGAGTACTCGTTGTG 57.355 47.619 16.56 7.45 0.00 3.33
165 166 5.979288 ATAAGACTTGGAGTACTCGTTGT 57.021 39.130 16.56 13.60 0.00 3.32
166 167 7.086230 AGTATAAGACTTGGAGTACTCGTTG 57.914 40.000 16.56 10.70 33.13 4.10
167 168 6.318396 GGAGTATAAGACTTGGAGTACTCGTT 59.682 42.308 16.56 5.80 39.06 3.85
168 169 5.821995 GGAGTATAAGACTTGGAGTACTCGT 59.178 44.000 16.56 9.07 39.06 4.18
169 170 5.821470 TGGAGTATAAGACTTGGAGTACTCG 59.179 44.000 16.56 5.80 39.06 4.18
170 171 7.642082 TTGGAGTATAAGACTTGGAGTACTC 57.358 40.000 14.87 14.87 39.06 2.59
171 172 8.478877 CATTTGGAGTATAAGACTTGGAGTACT 58.521 37.037 0.00 0.00 39.06 2.73
172 173 7.224949 GCATTTGGAGTATAAGACTTGGAGTAC 59.775 40.741 0.00 0.00 39.06 2.73
173 174 7.125811 AGCATTTGGAGTATAAGACTTGGAGTA 59.874 37.037 0.00 0.00 39.06 2.59
174 175 6.069963 AGCATTTGGAGTATAAGACTTGGAGT 60.070 38.462 0.00 0.00 39.06 3.85
175 176 6.352516 AGCATTTGGAGTATAAGACTTGGAG 58.647 40.000 0.00 0.00 39.06 3.86
176 177 6.313519 AGCATTTGGAGTATAAGACTTGGA 57.686 37.500 0.00 0.00 39.06 3.53
177 178 6.238211 CGAAGCATTTGGAGTATAAGACTTGG 60.238 42.308 0.00 0.00 39.06 3.61
178 179 6.709643 CGAAGCATTTGGAGTATAAGACTTG 58.290 40.000 0.00 0.00 39.06 3.16
179 180 6.910536 CGAAGCATTTGGAGTATAAGACTT 57.089 37.500 0.00 0.00 39.06 3.01
198 199 3.564225 AGACCACTAAAAACAAGGCGAAG 59.436 43.478 0.00 0.00 0.00 3.79
199 200 3.547746 AGACCACTAAAAACAAGGCGAA 58.452 40.909 0.00 0.00 0.00 4.70
200 201 3.202829 AGACCACTAAAAACAAGGCGA 57.797 42.857 0.00 0.00 0.00 5.54
201 202 3.982576 AAGACCACTAAAAACAAGGCG 57.017 42.857 0.00 0.00 0.00 5.52
202 203 4.217767 CCCTAAGACCACTAAAAACAAGGC 59.782 45.833 0.00 0.00 0.00 4.35
203 204 4.217767 GCCCTAAGACCACTAAAAACAAGG 59.782 45.833 0.00 0.00 0.00 3.61
204 205 4.217767 GGCCCTAAGACCACTAAAAACAAG 59.782 45.833 0.00 0.00 0.00 3.16
205 206 4.146564 GGCCCTAAGACCACTAAAAACAA 58.853 43.478 0.00 0.00 0.00 2.83
206 207 3.138653 TGGCCCTAAGACCACTAAAAACA 59.861 43.478 0.00 0.00 0.00 2.83
207 208 3.756963 CTGGCCCTAAGACCACTAAAAAC 59.243 47.826 0.00 0.00 0.00 2.43
208 209 3.653836 TCTGGCCCTAAGACCACTAAAAA 59.346 43.478 0.00 0.00 0.00 1.94
209 210 3.253220 TCTGGCCCTAAGACCACTAAAA 58.747 45.455 0.00 0.00 0.00 1.52
210 211 2.910544 TCTGGCCCTAAGACCACTAAA 58.089 47.619 0.00 0.00 0.00 1.85
211 212 2.634639 TCTGGCCCTAAGACCACTAA 57.365 50.000 0.00 0.00 0.00 2.24
212 213 2.398588 CATCTGGCCCTAAGACCACTA 58.601 52.381 0.00 0.00 0.00 2.74
213 214 1.207791 CATCTGGCCCTAAGACCACT 58.792 55.000 0.00 0.00 0.00 4.00
214 215 0.181350 CCATCTGGCCCTAAGACCAC 59.819 60.000 0.00 0.00 0.00 4.16
215 216 0.253160 ACCATCTGGCCCTAAGACCA 60.253 55.000 0.00 0.00 39.32 4.02
216 217 0.181350 CACCATCTGGCCCTAAGACC 59.819 60.000 0.00 0.00 39.32 3.85
217 218 0.181350 CCACCATCTGGCCCTAAGAC 59.819 60.000 0.00 0.00 39.32 3.01
218 219 0.253160 ACCACCATCTGGCCCTAAGA 60.253 55.000 0.00 0.00 45.32 2.10
219 220 0.107017 CACCACCATCTGGCCCTAAG 60.107 60.000 0.00 0.00 45.32 2.18
220 221 1.998530 CACCACCATCTGGCCCTAA 59.001 57.895 0.00 0.00 45.32 2.69
221 222 2.679342 GCACCACCATCTGGCCCTA 61.679 63.158 0.00 0.00 45.32 3.53
222 223 4.052518 GCACCACCATCTGGCCCT 62.053 66.667 0.00 0.00 45.32 5.19
223 224 4.365111 TGCACCACCATCTGGCCC 62.365 66.667 0.00 0.00 45.32 5.80
224 225 2.753043 CTGCACCACCATCTGGCC 60.753 66.667 0.00 0.00 45.32 5.36
225 226 3.446570 GCTGCACCACCATCTGGC 61.447 66.667 0.00 0.00 45.32 4.85
227 228 1.028330 ATTCGCTGCACCACCATCTG 61.028 55.000 0.00 0.00 0.00 2.90
228 229 0.745845 GATTCGCTGCACCACCATCT 60.746 55.000 0.00 0.00 0.00 2.90
229 230 1.718757 GGATTCGCTGCACCACCATC 61.719 60.000 0.00 0.00 0.00 3.51
230 231 1.750399 GGATTCGCTGCACCACCAT 60.750 57.895 0.00 0.00 0.00 3.55
231 232 1.549243 TAGGATTCGCTGCACCACCA 61.549 55.000 0.00 0.00 0.00 4.17
232 233 0.811616 CTAGGATTCGCTGCACCACC 60.812 60.000 0.00 0.00 0.00 4.61
233 234 1.432270 GCTAGGATTCGCTGCACCAC 61.432 60.000 0.00 0.00 0.00 4.16
234 235 1.153369 GCTAGGATTCGCTGCACCA 60.153 57.895 0.00 0.00 0.00 4.17
235 236 1.889573 GGCTAGGATTCGCTGCACC 60.890 63.158 0.00 0.00 0.00 5.01
236 237 0.462759 AAGGCTAGGATTCGCTGCAC 60.463 55.000 0.00 0.00 0.00 4.57
237 238 0.253044 AAAGGCTAGGATTCGCTGCA 59.747 50.000 0.00 0.00 0.00 4.41
238 239 0.659957 CAAAGGCTAGGATTCGCTGC 59.340 55.000 0.00 0.00 0.00 5.25
239 240 0.659957 GCAAAGGCTAGGATTCGCTG 59.340 55.000 0.00 0.00 36.96 5.18
240 241 0.464554 GGCAAAGGCTAGGATTCGCT 60.465 55.000 0.00 0.00 40.87 4.93
241 242 1.448119 GGGCAAAGGCTAGGATTCGC 61.448 60.000 0.00 0.00 40.87 4.70
242 243 1.160329 CGGGCAAAGGCTAGGATTCG 61.160 60.000 0.00 0.00 40.87 3.34
243 244 0.107165 ACGGGCAAAGGCTAGGATTC 60.107 55.000 0.00 0.00 40.87 2.52
244 245 0.394352 CACGGGCAAAGGCTAGGATT 60.394 55.000 0.00 0.00 40.87 3.01
245 246 1.224592 CACGGGCAAAGGCTAGGAT 59.775 57.895 0.00 0.00 40.87 3.24
246 247 2.668632 CACGGGCAAAGGCTAGGA 59.331 61.111 0.00 0.00 40.87 2.94
247 248 2.438434 CCACGGGCAAAGGCTAGG 60.438 66.667 0.00 0.00 40.87 3.02
248 249 2.438434 CCCACGGGCAAAGGCTAG 60.438 66.667 0.00 0.00 40.87 3.42
249 250 2.931105 TCCCACGGGCAAAGGCTA 60.931 61.111 0.00 0.00 40.87 3.93
250 251 4.351054 CTCCCACGGGCAAAGGCT 62.351 66.667 0.00 0.00 40.87 4.58
260 261 3.546714 AAAACGGAGGCCTCCCACG 62.547 63.158 40.37 31.35 46.96 4.94
261 262 0.037160 TAAAAACGGAGGCCTCCCAC 59.963 55.000 40.37 20.44 46.96 4.61
262 263 0.326927 CTAAAAACGGAGGCCTCCCA 59.673 55.000 40.37 20.09 46.96 4.37
263 264 0.616891 TCTAAAAACGGAGGCCTCCC 59.383 55.000 40.37 25.07 46.96 4.30
264 265 1.278413 AGTCTAAAAACGGAGGCCTCC 59.722 52.381 38.24 38.24 46.18 4.30
265 266 2.347731 CAGTCTAAAAACGGAGGCCTC 58.652 52.381 25.59 25.59 0.00 4.70
266 267 1.610886 GCAGTCTAAAAACGGAGGCCT 60.611 52.381 3.86 3.86 0.00 5.19
267 268 0.803117 GCAGTCTAAAAACGGAGGCC 59.197 55.000 0.00 0.00 0.00 5.19
268 269 1.732809 GAGCAGTCTAAAAACGGAGGC 59.267 52.381 0.00 0.00 0.00 4.70
269 270 2.737252 GTGAGCAGTCTAAAAACGGAGG 59.263 50.000 0.00 0.00 0.00 4.30
270 271 2.408704 CGTGAGCAGTCTAAAAACGGAG 59.591 50.000 0.00 0.00 0.00 4.63
271 272 2.034939 TCGTGAGCAGTCTAAAAACGGA 59.965 45.455 0.00 0.00 0.00 4.69
272 273 2.400399 TCGTGAGCAGTCTAAAAACGG 58.600 47.619 0.00 0.00 0.00 4.44
273 274 3.734231 TCTTCGTGAGCAGTCTAAAAACG 59.266 43.478 0.00 0.00 0.00 3.60
274 275 4.375105 CGTCTTCGTGAGCAGTCTAAAAAC 60.375 45.833 0.00 0.00 0.00 2.43
275 276 3.734231 CGTCTTCGTGAGCAGTCTAAAAA 59.266 43.478 0.00 0.00 0.00 1.94
276 277 3.004002 TCGTCTTCGTGAGCAGTCTAAAA 59.996 43.478 0.00 0.00 38.33 1.52
277 278 2.551032 TCGTCTTCGTGAGCAGTCTAAA 59.449 45.455 0.00 0.00 38.33 1.85
278 279 2.148768 TCGTCTTCGTGAGCAGTCTAA 58.851 47.619 0.00 0.00 38.33 2.10
279 280 1.732809 CTCGTCTTCGTGAGCAGTCTA 59.267 52.381 0.00 0.00 38.33 2.59
280 281 0.519519 CTCGTCTTCGTGAGCAGTCT 59.480 55.000 0.00 0.00 38.33 3.24
281 282 0.517755 TCTCGTCTTCGTGAGCAGTC 59.482 55.000 0.00 0.00 35.22 3.51
282 283 0.238817 GTCTCGTCTTCGTGAGCAGT 59.761 55.000 0.00 0.00 39.60 4.40
283 284 0.238553 TGTCTCGTCTTCGTGAGCAG 59.761 55.000 0.00 0.00 39.60 4.24
284 285 0.238553 CTGTCTCGTCTTCGTGAGCA 59.761 55.000 0.00 0.00 39.60 4.26
285 286 0.238817 ACTGTCTCGTCTTCGTGAGC 59.761 55.000 0.00 0.00 39.60 4.26
286 287 1.957089 CACTGTCTCGTCTTCGTGAG 58.043 55.000 0.00 0.00 39.60 3.51
287 288 0.040336 GCACTGTCTCGTCTTCGTGA 60.040 55.000 0.00 0.00 37.26 4.35
288 289 0.317854 TGCACTGTCTCGTCTTCGTG 60.318 55.000 0.00 0.00 38.33 4.35
289 290 0.039978 CTGCACTGTCTCGTCTTCGT 60.040 55.000 0.00 0.00 38.33 3.85
290 291 1.340657 GCTGCACTGTCTCGTCTTCG 61.341 60.000 0.00 0.00 38.55 3.79
291 292 1.340657 CGCTGCACTGTCTCGTCTTC 61.341 60.000 0.00 0.00 0.00 2.87
292 293 1.372251 CGCTGCACTGTCTCGTCTT 60.372 57.895 0.00 0.00 0.00 3.01
293 294 2.076622 AACGCTGCACTGTCTCGTCT 62.077 55.000 0.00 0.00 32.53 4.18
294 295 1.215655 AAACGCTGCACTGTCTCGTC 61.216 55.000 0.00 0.00 32.53 4.20
295 296 1.227263 AAACGCTGCACTGTCTCGT 60.227 52.632 0.00 0.00 34.63 4.18
296 297 1.202568 CAAACGCTGCACTGTCTCG 59.797 57.895 0.00 0.00 0.00 4.04
297 298 1.457303 CTACAAACGCTGCACTGTCTC 59.543 52.381 0.00 0.00 0.00 3.36
298 299 1.202533 ACTACAAACGCTGCACTGTCT 60.203 47.619 0.00 0.00 0.00 3.41
299 300 1.192534 GACTACAAACGCTGCACTGTC 59.807 52.381 0.00 0.00 0.00 3.51
300 301 1.217882 GACTACAAACGCTGCACTGT 58.782 50.000 0.00 1.98 0.00 3.55
301 302 1.217001 TGACTACAAACGCTGCACTG 58.783 50.000 0.00 0.00 0.00 3.66
302 303 2.169832 ATGACTACAAACGCTGCACT 57.830 45.000 0.00 0.00 0.00 4.40
303 304 2.032030 ACAATGACTACAAACGCTGCAC 60.032 45.455 0.00 0.00 0.00 4.57
304 305 2.217750 ACAATGACTACAAACGCTGCA 58.782 42.857 0.00 0.00 0.00 4.41
305 306 2.969443 ACAATGACTACAAACGCTGC 57.031 45.000 0.00 0.00 0.00 5.25
306 307 3.059868 ACGAACAATGACTACAAACGCTG 60.060 43.478 0.00 0.00 0.00 5.18
307 308 3.128349 ACGAACAATGACTACAAACGCT 58.872 40.909 0.00 0.00 0.00 5.07
308 309 3.515071 ACGAACAATGACTACAAACGC 57.485 42.857 0.00 0.00 0.00 4.84
309 310 4.828704 ACAACGAACAATGACTACAAACG 58.171 39.130 0.00 0.00 0.00 3.60
310 311 7.149192 GCAATACAACGAACAATGACTACAAAC 60.149 37.037 0.00 0.00 0.00 2.93
311 312 6.853872 GCAATACAACGAACAATGACTACAAA 59.146 34.615 0.00 0.00 0.00 2.83
312 313 6.367421 GCAATACAACGAACAATGACTACAA 58.633 36.000 0.00 0.00 0.00 2.41
313 314 5.106869 GGCAATACAACGAACAATGACTACA 60.107 40.000 0.00 0.00 0.00 2.74
314 315 5.321516 GGCAATACAACGAACAATGACTAC 58.678 41.667 0.00 0.00 0.00 2.73
315 316 4.092237 CGGCAATACAACGAACAATGACTA 59.908 41.667 0.00 0.00 0.00 2.59
316 317 3.120338 CGGCAATACAACGAACAATGACT 60.120 43.478 0.00 0.00 0.00 3.41
317 318 3.160545 CGGCAATACAACGAACAATGAC 58.839 45.455 0.00 0.00 0.00 3.06
318 319 2.809119 ACGGCAATACAACGAACAATGA 59.191 40.909 0.00 0.00 0.00 2.57
319 320 2.908009 CACGGCAATACAACGAACAATG 59.092 45.455 0.00 0.00 0.00 2.82
320 321 2.809119 TCACGGCAATACAACGAACAAT 59.191 40.909 0.00 0.00 0.00 2.71
321 322 2.210961 TCACGGCAATACAACGAACAA 58.789 42.857 0.00 0.00 0.00 2.83
322 323 1.867166 TCACGGCAATACAACGAACA 58.133 45.000 0.00 0.00 0.00 3.18
323 324 3.160545 CAATCACGGCAATACAACGAAC 58.839 45.455 0.00 0.00 0.00 3.95
324 325 2.160615 CCAATCACGGCAATACAACGAA 59.839 45.455 0.00 0.00 0.00 3.85
325 326 1.735018 CCAATCACGGCAATACAACGA 59.265 47.619 0.00 0.00 0.00 3.85
326 327 1.202132 CCCAATCACGGCAATACAACG 60.202 52.381 0.00 0.00 0.00 4.10
327 328 1.469079 GCCCAATCACGGCAATACAAC 60.469 52.381 0.00 0.00 46.27 3.32
328 329 0.814457 GCCCAATCACGGCAATACAA 59.186 50.000 0.00 0.00 46.27 2.41
329 330 2.487918 GCCCAATCACGGCAATACA 58.512 52.632 0.00 0.00 46.27 2.29
336 337 2.438434 GTCCCTGCCCAATCACGG 60.438 66.667 0.00 0.00 0.00 4.94
337 338 2.819595 CGTCCCTGCCCAATCACG 60.820 66.667 0.00 0.00 0.00 4.35
338 339 2.438434 CCGTCCCTGCCCAATCAC 60.438 66.667 0.00 0.00 0.00 3.06
339 340 2.933287 ACCGTCCCTGCCCAATCA 60.933 61.111 0.00 0.00 0.00 2.57
340 341 2.438434 CACCGTCCCTGCCCAATC 60.438 66.667 0.00 0.00 0.00 2.67
341 342 4.047125 CCACCGTCCCTGCCCAAT 62.047 66.667 0.00 0.00 0.00 3.16
347 348 1.562672 ATTTCTCCCCACCGTCCCTG 61.563 60.000 0.00 0.00 0.00 4.45
348 349 1.229853 ATTTCTCCCCACCGTCCCT 60.230 57.895 0.00 0.00 0.00 4.20
349 350 1.077716 CATTTCTCCCCACCGTCCC 60.078 63.158 0.00 0.00 0.00 4.46
350 351 0.107654 CTCATTTCTCCCCACCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
351 352 0.107654 CCTCATTTCTCCCCACCGTC 60.108 60.000 0.00 0.00 0.00 4.79
352 353 1.562672 CCCTCATTTCTCCCCACCGT 61.563 60.000 0.00 0.00 0.00 4.83
353 354 1.224592 CCCTCATTTCTCCCCACCG 59.775 63.158 0.00 0.00 0.00 4.94
354 355 1.076705 GCCCTCATTTCTCCCCACC 60.077 63.158 0.00 0.00 0.00 4.61
355 356 1.134068 GTAGCCCTCATTTCTCCCCAC 60.134 57.143 0.00 0.00 0.00 4.61
356 357 1.213296 GTAGCCCTCATTTCTCCCCA 58.787 55.000 0.00 0.00 0.00 4.96
357 358 0.106894 CGTAGCCCTCATTTCTCCCC 59.893 60.000 0.00 0.00 0.00 4.81
358 359 1.069358 CTCGTAGCCCTCATTTCTCCC 59.931 57.143 0.00 0.00 0.00 4.30
359 360 1.069358 CCTCGTAGCCCTCATTTCTCC 59.931 57.143 0.00 0.00 0.00 3.71
360 361 1.069358 CCCTCGTAGCCCTCATTTCTC 59.931 57.143 0.00 0.00 0.00 2.87
361 362 1.123928 CCCTCGTAGCCCTCATTTCT 58.876 55.000 0.00 0.00 0.00 2.52
362 363 0.106894 CCCCTCGTAGCCCTCATTTC 59.893 60.000 0.00 0.00 0.00 2.17
363 364 0.326238 TCCCCTCGTAGCCCTCATTT 60.326 55.000 0.00 0.00 0.00 2.32
364 365 0.326238 TTCCCCTCGTAGCCCTCATT 60.326 55.000 0.00 0.00 0.00 2.57
365 366 0.760945 CTTCCCCTCGTAGCCCTCAT 60.761 60.000 0.00 0.00 0.00 2.90
366 367 1.381327 CTTCCCCTCGTAGCCCTCA 60.381 63.158 0.00 0.00 0.00 3.86
367 368 2.134933 CCTTCCCCTCGTAGCCCTC 61.135 68.421 0.00 0.00 0.00 4.30
368 369 2.041819 CCTTCCCCTCGTAGCCCT 60.042 66.667 0.00 0.00 0.00 5.19
369 370 3.162154 CCCTTCCCCTCGTAGCCC 61.162 72.222 0.00 0.00 0.00 5.19
370 371 3.162154 CCCCTTCCCCTCGTAGCC 61.162 72.222 0.00 0.00 0.00 3.93
371 372 2.042230 TCCCCTTCCCCTCGTAGC 60.042 66.667 0.00 0.00 0.00 3.58
372 373 2.125961 CGTCCCCTTCCCCTCGTAG 61.126 68.421 0.00 0.00 0.00 3.51
373 374 2.043652 CGTCCCCTTCCCCTCGTA 60.044 66.667 0.00 0.00 0.00 3.43
379 380 4.735599 ACTCCCCGTCCCCTTCCC 62.736 72.222 0.00 0.00 0.00 3.97
380 381 3.400054 CACTCCCCGTCCCCTTCC 61.400 72.222 0.00 0.00 0.00 3.46
381 382 3.400054 CCACTCCCCGTCCCCTTC 61.400 72.222 0.00 0.00 0.00 3.46
389 390 4.733725 TTCCCCTCCCACTCCCCG 62.734 72.222 0.00 0.00 0.00 5.73
390 391 1.440362 TTTTTCCCCTCCCACTCCCC 61.440 60.000 0.00 0.00 0.00 4.81
391 392 2.170052 TTTTTCCCCTCCCACTCCC 58.830 57.895 0.00 0.00 0.00 4.30
408 409 7.231519 CCTATCACACTTTTCCTTCCTCTTTTT 59.768 37.037 0.00 0.00 0.00 1.94
409 410 6.717084 CCTATCACACTTTTCCTTCCTCTTTT 59.283 38.462 0.00 0.00 0.00 2.27
410 411 6.241645 CCTATCACACTTTTCCTTCCTCTTT 58.758 40.000 0.00 0.00 0.00 2.52
411 412 5.280727 CCCTATCACACTTTTCCTTCCTCTT 60.281 44.000 0.00 0.00 0.00 2.85
412 413 4.226168 CCCTATCACACTTTTCCTTCCTCT 59.774 45.833 0.00 0.00 0.00 3.69
413 414 4.518249 CCCTATCACACTTTTCCTTCCTC 58.482 47.826 0.00 0.00 0.00 3.71
414 415 3.267031 CCCCTATCACACTTTTCCTTCCT 59.733 47.826 0.00 0.00 0.00 3.36
415 416 3.010250 ACCCCTATCACACTTTTCCTTCC 59.990 47.826 0.00 0.00 0.00 3.46
416 417 4.302559 ACCCCTATCACACTTTTCCTTC 57.697 45.455 0.00 0.00 0.00 3.46
417 418 4.741928 AACCCCTATCACACTTTTCCTT 57.258 40.909 0.00 0.00 0.00 3.36
418 419 4.741928 AAACCCCTATCACACTTTTCCT 57.258 40.909 0.00 0.00 0.00 3.36
419 420 4.830600 TGAAAACCCCTATCACACTTTTCC 59.169 41.667 0.00 0.00 30.08 3.13
420 421 6.590234 ATGAAAACCCCTATCACACTTTTC 57.410 37.500 0.00 0.00 0.00 2.29
421 422 6.994421 AATGAAAACCCCTATCACACTTTT 57.006 33.333 0.00 0.00 0.00 2.27
422 423 8.485578 TTTAATGAAAACCCCTATCACACTTT 57.514 30.769 0.00 0.00 0.00 2.66
423 424 8.485578 TTTTAATGAAAACCCCTATCACACTT 57.514 30.769 0.00 0.00 29.38 3.16
424 425 8.485578 TTTTTAATGAAAACCCCTATCACACT 57.514 30.769 0.00 0.00 34.24 3.55
448 449 0.554305 ACTCCCAACCGGACCTTTTT 59.446 50.000 9.46 0.00 34.86 1.94
449 450 1.350019 CTACTCCCAACCGGACCTTTT 59.650 52.381 9.46 0.00 34.86 2.27
450 451 0.981943 CTACTCCCAACCGGACCTTT 59.018 55.000 9.46 0.00 34.86 3.11
451 452 1.551019 GCTACTCCCAACCGGACCTT 61.551 60.000 9.46 0.00 34.86 3.50
452 453 1.988406 GCTACTCCCAACCGGACCT 60.988 63.158 9.46 0.00 34.86 3.85
453 454 1.623542 ATGCTACTCCCAACCGGACC 61.624 60.000 9.46 0.00 34.86 4.46
454 455 0.252197 AATGCTACTCCCAACCGGAC 59.748 55.000 9.46 0.00 34.86 4.79
455 456 0.988832 AAATGCTACTCCCAACCGGA 59.011 50.000 9.46 0.00 38.83 5.14
456 457 1.065418 AGAAATGCTACTCCCAACCGG 60.065 52.381 0.00 0.00 0.00 5.28
457 458 2.093447 AGAGAAATGCTACTCCCAACCG 60.093 50.000 0.00 0.00 34.13 4.44
458 459 3.636153 AGAGAAATGCTACTCCCAACC 57.364 47.619 0.00 0.00 34.13 3.77
459 460 5.354513 GGTTAAGAGAAATGCTACTCCCAAC 59.645 44.000 0.00 0.00 34.13 3.77
460 461 5.013704 TGGTTAAGAGAAATGCTACTCCCAA 59.986 40.000 0.00 0.00 34.13 4.12
461 462 4.534500 TGGTTAAGAGAAATGCTACTCCCA 59.466 41.667 0.00 0.00 34.13 4.37
462 463 5.099042 TGGTTAAGAGAAATGCTACTCCC 57.901 43.478 0.00 0.00 34.13 4.30
463 464 7.336931 TCATTTGGTTAAGAGAAATGCTACTCC 59.663 37.037 0.00 0.00 37.12 3.85
464 465 8.268850 TCATTTGGTTAAGAGAAATGCTACTC 57.731 34.615 0.00 0.00 37.12 2.59
465 466 7.148171 GCTCATTTGGTTAAGAGAAATGCTACT 60.148 37.037 0.00 0.00 37.12 2.57
466 467 6.969473 GCTCATTTGGTTAAGAGAAATGCTAC 59.031 38.462 0.00 0.00 37.12 3.58
467 468 6.658816 TGCTCATTTGGTTAAGAGAAATGCTA 59.341 34.615 0.00 0.00 37.12 3.49
468 469 5.477984 TGCTCATTTGGTTAAGAGAAATGCT 59.522 36.000 0.00 0.00 37.12 3.79
469 470 5.713025 TGCTCATTTGGTTAAGAGAAATGC 58.287 37.500 0.00 0.00 37.12 3.56
470 471 7.487189 GTCATGCTCATTTGGTTAAGAGAAATG 59.513 37.037 0.00 0.00 38.08 2.32
471 472 7.395489 AGTCATGCTCATTTGGTTAAGAGAAAT 59.605 33.333 0.00 0.00 0.00 2.17
472 473 6.716628 AGTCATGCTCATTTGGTTAAGAGAAA 59.283 34.615 0.00 0.00 0.00 2.52
473 474 6.240894 AGTCATGCTCATTTGGTTAAGAGAA 58.759 36.000 0.00 0.00 0.00 2.87
474 475 5.809001 AGTCATGCTCATTTGGTTAAGAGA 58.191 37.500 0.00 0.00 0.00 3.10
475 476 6.320171 CAAGTCATGCTCATTTGGTTAAGAG 58.680 40.000 0.00 0.00 0.00 2.85
476 477 6.258230 CAAGTCATGCTCATTTGGTTAAGA 57.742 37.500 0.00 0.00 0.00 2.10
495 496 0.108138 GGCAGAGTATGACGGCAAGT 60.108 55.000 0.00 0.00 0.00 3.16
496 497 0.108186 TGGCAGAGTATGACGGCAAG 60.108 55.000 0.00 0.00 41.39 4.01
497 498 0.108186 CTGGCAGAGTATGACGGCAA 60.108 55.000 9.42 0.00 41.39 4.52
498 499 0.970427 TCTGGCAGAGTATGACGGCA 60.970 55.000 14.43 0.00 43.86 5.69
499 500 0.528684 GTCTGGCAGAGTATGACGGC 60.529 60.000 19.38 0.00 43.86 5.68
500 501 0.103208 GGTCTGGCAGAGTATGACGG 59.897 60.000 19.38 0.00 45.82 4.79
501 502 0.817654 TGGTCTGGCAGAGTATGACG 59.182 55.000 19.38 0.00 41.39 4.35
502 503 2.497675 TCTTGGTCTGGCAGAGTATGAC 59.502 50.000 19.38 5.54 37.50 3.06
503 504 2.762887 CTCTTGGTCTGGCAGAGTATGA 59.237 50.000 19.38 15.09 31.07 2.15
504 505 2.762887 TCTCTTGGTCTGGCAGAGTATG 59.237 50.000 19.38 11.76 36.27 2.39
505 506 3.107402 TCTCTTGGTCTGGCAGAGTAT 57.893 47.619 19.38 0.00 36.27 2.12
506 507 2.604912 TCTCTTGGTCTGGCAGAGTA 57.395 50.000 19.38 7.01 36.27 2.59
507 508 1.622811 CTTCTCTTGGTCTGGCAGAGT 59.377 52.381 19.38 0.00 36.27 3.24
654 655 4.994471 TGCCGTGGCTGCTGTCAG 62.994 66.667 12.84 0.00 43.16 3.51
719 720 8.693504 GTTATATATAGCACGCGTTTCAAACTA 58.306 33.333 10.22 5.18 0.00 2.24
936 943 1.573108 AGAGGGAAAGAAGGCGATGA 58.427 50.000 0.00 0.00 0.00 2.92
1032 1039 2.516460 GGCAGGCTGCTGATCCAG 60.516 66.667 35.73 0.00 44.28 3.86
1098 1105 2.562912 GCCGACGGTGAAGACGTA 59.437 61.111 16.73 0.00 45.68 3.57
1102 1109 2.537792 GATGACGCCGACGGTGAAGA 62.538 60.000 32.86 16.01 46.04 2.87
1108 1115 2.880879 CTGTGATGACGCCGACGG 60.881 66.667 10.29 10.29 46.04 4.79
1139 1146 0.322816 TGATTTGGTGGCTGAGAGGC 60.323 55.000 0.00 0.00 41.77 4.70
1146 1153 2.445155 GGGGGTGATTTGGTGGCT 59.555 61.111 0.00 0.00 0.00 4.75
1165 1172 4.432741 GAGGTGGGAAGGCTGGGC 62.433 72.222 0.00 0.00 0.00 5.36
1177 1184 1.484240 GGAGATGGAGAAGGTGAGGTG 59.516 57.143 0.00 0.00 0.00 4.00
1198 1205 2.221906 ATCGGCTCGCGGTAGTTTGT 62.222 55.000 6.13 0.00 0.00 2.83
1200 1207 1.226888 GATCGGCTCGCGGTAGTTT 60.227 57.895 6.13 0.00 0.00 2.66
1218 1225 1.137513 GTTTCGACGTCCACAGGAAG 58.862 55.000 10.58 0.00 37.23 3.46
1402 1409 3.650139 AGAAGACTATGTTGAACGCGTT 58.350 40.909 26.97 26.97 0.00 4.84
1558 1565 1.152312 ACTGGTCCTCGAGGTTGGT 60.152 57.895 30.17 20.32 36.34 3.67
1887 1894 9.401873 TCGGTAAAATCTGTATATGTGAATACG 57.598 33.333 0.00 0.00 35.48 3.06
1894 1901 9.216117 GCCTATTTCGGTAAAATCTGTATATGT 57.784 33.333 0.00 0.00 38.53 2.29
1895 1902 9.436957 AGCCTATTTCGGTAAAATCTGTATATG 57.563 33.333 0.00 0.00 38.53 1.78
1898 1905 9.269453 GTAAGCCTATTTCGGTAAAATCTGTAT 57.731 33.333 0.00 0.00 38.53 2.29
1899 1906 7.436080 CGTAAGCCTATTTCGGTAAAATCTGTA 59.564 37.037 0.00 0.00 38.53 2.74
1900 1907 6.257193 CGTAAGCCTATTTCGGTAAAATCTGT 59.743 38.462 0.00 0.00 38.53 3.41
1901 1908 6.646636 CGTAAGCCTATTTCGGTAAAATCTG 58.353 40.000 0.00 0.00 38.53 2.90
1902 1909 6.839820 CGTAAGCCTATTTCGGTAAAATCT 57.160 37.500 0.00 0.00 38.53 2.40
2049 2057 1.443194 TGCCGTAGCTTTCGTCGAC 60.443 57.895 5.18 5.18 40.80 4.20
3334 3343 4.566907 GGGGTGCTTAGAAGTGGTTAATGA 60.567 45.833 0.00 0.00 0.00 2.57
3613 3623 8.522830 TGAGGAAATTCGAAATTTGCTTTCTAT 58.477 29.630 19.70 10.67 40.99 1.98
4002 4012 2.264480 CTCCCGTTCATGCCGTCA 59.736 61.111 4.32 0.00 0.00 4.35
4140 4150 6.437477 AGTTTACACTGTCTCCATACTCATCA 59.563 38.462 0.00 0.00 0.00 3.07
4218 4228 3.876156 GCCAGTAGGTTAGCCAAATCCAA 60.876 47.826 0.00 0.00 37.19 3.53
4290 4300 1.177401 GGGGAAGTTGCAGACATTCC 58.823 55.000 11.00 11.00 40.44 3.01
4362 4372 1.069973 CATGCACACACACCACTAACG 60.070 52.381 0.00 0.00 0.00 3.18
4644 4939 2.491693 GCTTACTTTGCTGCCCATGTTA 59.508 45.455 0.00 0.00 0.00 2.41
4652 4947 7.970614 ACATATTTAAAGAGCTTACTTTGCTGC 59.029 33.333 9.97 0.00 41.30 5.25
4676 4971 8.995220 GTTCATGTGTAGTAAAAACTATCCACA 58.005 33.333 9.87 9.87 35.30 4.17
4677 4972 9.216117 AGTTCATGTGTAGTAAAAACTATCCAC 57.784 33.333 0.00 0.00 0.00 4.02
5144 5593 0.962356 GCCAAGTGGTGACATGGAGG 60.962 60.000 0.00 0.00 42.08 4.30
5174 5623 4.020617 CCTGCCGCTTCACCTCCA 62.021 66.667 0.00 0.00 0.00 3.86
5230 5681 7.250569 CGGAGCAACATCACAAGTTTATATTT 58.749 34.615 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.