AutoCloner

Multiple sequence alignment - TraesCS3B01G113700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G113700	chr3B	100.000	3337	0	0	1	3337	79780851	79784187	0.000000e+00	6163.0
1	TraesCS3B01G113700	chr3B	90.487	1766	123	22	723	2476	79560116	79561848	0.000000e+00	2289.0
2	TraesCS3B01G113700	chr3B	82.594	293	42	8	308	595	801299511	801299223	1.990000e-62	250.0
3	TraesCS3B01G113700	chr3B	89.726	146	6	2	697	841	79559861	79559998	9.510000e-41	178.0
4	TraesCS3B01G113700	chr3D	95.267	1986	64	15	594	2567	50381049	50383016	0.000000e+00	3120.0
5	TraesCS3B01G113700	chr3D	90.602	1777	121	21	722	2477	50075552	50077303	0.000000e+00	2314.0
6	TraesCS3B01G113700	chr3D	89.386	782	63	8	2558	3335	945073	945838	0.000000e+00	966.0
7	TraesCS3B01G113700	chr3D	95.849	265	10	1	1	264	50379457	50379721	8.560000e-116	427.0
8	TraesCS3B01G113700	chr3D	89.726	146	6	2	697	841	50074822	50074959	9.510000e-41	178.0
9	TraesCS3B01G113700	chr3D	93.043	115	8	0	594	708	50074686	50074800	5.730000e-38	169.0
10	TraesCS3B01G113700	chr3A	90.789	1368	105	12	976	2337	63389194	63390546	0.000000e+00	1808.0
11	TraesCS3B01G113700	chr3A	88.728	1446	122	21	904	2340	63434165	63435578	0.000000e+00	1729.0
12	TraesCS3B01G113700	chr3A	89.974	379	33	4	1311	1686	63387379	63387755	5.010000e-133	484.0
13	TraesCS3B01G113700	chr3A	85.330	409	45	7	306	708	63426172	63426571	3.100000e-110	409.0
14	TraesCS3B01G113700	chr3A	84.699	183	7	2	697	879	63426593	63426754	2.660000e-36	163.0
15	TraesCS3B01G113700	chr3A	89.916	119	10	2	163	280	63409196	63409313	5.770000e-33	152.0
16	TraesCS3B01G113700	chr3A	88.000	75	7	1	2335	2407	63390579	63390653	1.650000e-13	87.9
17	TraesCS3B01G113700	chr3A	87.671	73	9	0	97	169	63391642	63391714	5.930000e-13	86.1
18	TraesCS3B01G113700	chr6B	89.651	773	64	3	2567	3337	699805593	699806351	0.000000e+00	970.0
19	TraesCS3B01G113700	chr6B	89.392	773	66	3	2567	3337	699885105	699885863	0.000000e+00	959.0
20	TraesCS3B01G113700	chr6B	89.133	773	68	3	2567	3337	699845496	699846254	0.000000e+00	948.0
21	TraesCS3B01G113700	chr6B	88.031	777	78	3	2565	3337	199715863	199715098	0.000000e+00	905.0
22	TraesCS3B01G113700	chr6B	87.964	781	73	7	2564	3335	548639859	548640627	0.000000e+00	902.0
23	TraesCS3B01G113700	chr6B	88.212	755	65	12	2590	3335	347552345	347553084	0.000000e+00	880.0
24	TraesCS3B01G113700	chr6B	86.676	713	55	18	2659	3337	564316615	564317321	0.000000e+00	754.0
25	TraesCS3B01G113700	chr5D	88.205	780	73	10	2562	3337	417621045	417621809	0.000000e+00	913.0
26	TraesCS3B01G113700	chr1B	87.690	788	69	11	2567	3336	256200484	256199707	0.000000e+00	893.0
27	TraesCS3B01G113700	chr1B	87.564	780	75	10	2567	3335	115447974	115448742	0.000000e+00	883.0
28	TraesCS3B01G113700	chr1B	79.034	849	164	13	1459	2300	101527996	101527155	1.340000e-158	569.0
29	TraesCS3B01G113700	chr1B	81.728	301	37	10	1074	1365	101528289	101527998	5.570000e-58	235.0
30	TraesCS3B01G113700	chr1B	88.393	112	12	1	1	111	98391555	98391444	2.090000e-27	134.0
31	TraesCS3B01G113700	chr1B	88.393	112	12	1	1	111	98438910	98438799	2.090000e-27	134.0
32	TraesCS3B01G113700	chr1B	86.087	115	14	2	1	113	353765194	353765080	4.520000e-24	122.0
33	TraesCS3B01G113700	chr1B	85.849	106	13	2	1	104	301365195	301365300	9.790000e-21	111.0
34	TraesCS3B01G113700	chr2B	91.008	645	46	7	2697	3337	21533811	21533175	0.000000e+00	859.0
35	TraesCS3B01G113700	chr2B	90.590	627	50	6	2711	3337	689311552	689312169	0.000000e+00	822.0
36	TraesCS3B01G113700	chr2B	91.209	91	7	1	18	107	51953221	51953131	4.520000e-24	122.0
37	TraesCS3B01G113700	chr2B	85.321	109	14	2	1	107	701746193	701746085	9.790000e-21	111.0
38	TraesCS3B01G113700	chr4A	86.805	773	70	17	2567	3335	668440667	668439923	0.000000e+00	833.0
39	TraesCS3B01G113700	chr6D	94.595	518	27	1	2821	3337	28266660	28267177	0.000000e+00	800.0
40	TraesCS3B01G113700	chr1D	78.563	849	168	12	1459	2300	63429260	63428419	6.290000e-152	547.0
41	TraesCS3B01G113700	chr1D	80.672	357	58	8	223	569	463343606	463343251	1.970000e-67	267.0
42	TraesCS3B01G113700	chr1D	79.481	385	52	18	221	595	33606859	33607226	7.150000e-62	248.0
43	TraesCS3B01G113700	chr1D	79.135	393	49	22	221	595	22338563	22338940	1.200000e-59	241.0
44	TraesCS3B01G113700	chr1D	78.068	383	47	19	221	595	340546645	340546998	1.210000e-49	207.0
45	TraesCS3B01G113700	chr1A	75.870	891	193	19	1459	2338	62009654	62010533	5.110000e-118	435.0
46	TraesCS3B01G113700	chr1A	82.803	314	42	8	306	610	23437472	23437162	1.530000e-68	270.0
47	TraesCS3B01G113700	chr1A	79.379	354	56	12	223	569	555536213	555535870	2.000000e-57	233.0
48	TraesCS3B01G113700	chr1A	79.330	358	53	15	223	569	555535716	555535369	7.200000e-57	231.0
49	TraesCS3B01G113700	chr7D	80.902	377	48	12	229	595	34003971	34003609	3.280000e-70	276.0
50	TraesCS3B01G113700	chr2D	81.050	343	53	10	220	553	186756384	186756723	2.550000e-66	263.0
51	TraesCS3B01G113700	chr2D	80.982	163	27	1	2565	2723	493171378	493171540	3.500000e-25	126.0
52	TraesCS3B01G113700	chr4B	82.587	201	30	2	2565	2761	15598260	15598459	4.430000e-39	172.0
53	TraesCS3B01G113700	chr5B	86.713	143	9	4	2345	2477	77588120	77588262	2.070000e-32	150.0
54	TraesCS3B01G113700	chr7B	90.000	100	8	2	8	106	34238039	34238137	9.720000e-26	128.0
55	TraesCS3B01G113700	chr7B	86.239	109	11	4	1	106	140166017	140166124	7.570000e-22	115.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G113700	chr3B	79780851	79784187	3336	False	6163.0	6163	100.000000	1	3337	1	chr3B.!!$F1	3336
1	TraesCS3B01G113700	chr3B	79559861	79561848	1987	False	1233.5	2289	90.106500	697	2476	2	chr3B.!!$F2	1779
2	TraesCS3B01G113700	chr3D	50379457	50383016	3559	False	1773.5	3120	95.558000	1	2567	2	chr3D.!!$F3	2566
3	TraesCS3B01G113700	chr3D	945073	945838	765	False	966.0	966	89.386000	2558	3335	1	chr3D.!!$F1	777
4	TraesCS3B01G113700	chr3D	50074686	50077303	2617	False	887.0	2314	91.123667	594	2477	3	chr3D.!!$F2	1883
5	TraesCS3B01G113700	chr3A	63434165	63435578	1413	False	1729.0	1729	88.728000	904	2340	1	chr3A.!!$F2	1436
6	TraesCS3B01G113700	chr3A	63387379	63391714	4335	False	616.5	1808	89.108500	97	2407	4	chr3A.!!$F3	2310
7	TraesCS3B01G113700	chr3A	63426172	63426754	582	False	286.0	409	85.014500	306	879	2	chr3A.!!$F4	573
8	TraesCS3B01G113700	chr6B	699805593	699806351	758	False	970.0	970	89.651000	2567	3337	1	chr6B.!!$F4	770
9	TraesCS3B01G113700	chr6B	699885105	699885863	758	False	959.0	959	89.392000	2567	3337	1	chr6B.!!$F6	770
10	TraesCS3B01G113700	chr6B	699845496	699846254	758	False	948.0	948	89.133000	2567	3337	1	chr6B.!!$F5	770
11	TraesCS3B01G113700	chr6B	199715098	199715863	765	True	905.0	905	88.031000	2565	3337	1	chr6B.!!$R1	772
12	TraesCS3B01G113700	chr6B	548639859	548640627	768	False	902.0	902	87.964000	2564	3335	1	chr6B.!!$F2	771
13	TraesCS3B01G113700	chr6B	347552345	347553084	739	False	880.0	880	88.212000	2590	3335	1	chr6B.!!$F1	745
14	TraesCS3B01G113700	chr6B	564316615	564317321	706	False	754.0	754	86.676000	2659	3337	1	chr6B.!!$F3	678
15	TraesCS3B01G113700	chr5D	417621045	417621809	764	False	913.0	913	88.205000	2562	3337	1	chr5D.!!$F1	775
16	TraesCS3B01G113700	chr1B	256199707	256200484	777	True	893.0	893	87.690000	2567	3336	1	chr1B.!!$R3	769
17	TraesCS3B01G113700	chr1B	115447974	115448742	768	False	883.0	883	87.564000	2567	3335	1	chr1B.!!$F1	768
18	TraesCS3B01G113700	chr1B	101527155	101528289	1134	True	402.0	569	80.381000	1074	2300	2	chr1B.!!$R5	1226
19	TraesCS3B01G113700	chr2B	21533175	21533811	636	True	859.0	859	91.008000	2697	3337	1	chr2B.!!$R1	640
20	TraesCS3B01G113700	chr2B	689311552	689312169	617	False	822.0	822	90.590000	2711	3337	1	chr2B.!!$F1	626
21	TraesCS3B01G113700	chr4A	668439923	668440667	744	True	833.0	833	86.805000	2567	3335	1	chr4A.!!$R1	768
22	TraesCS3B01G113700	chr6D	28266660	28267177	517	False	800.0	800	94.595000	2821	3337	1	chr6D.!!$F1	516
23	TraesCS3B01G113700	chr1D	63428419	63429260	841	True	547.0	547	78.563000	1459	2300	1	chr1D.!!$R1	841
24	TraesCS3B01G113700	chr1A	62009654	62010533	879	False	435.0	435	75.870000	1459	2338	1	chr1A.!!$F1	879
25	TraesCS3B01G113700	chr1A	555535369	555536213	844	True	232.0	233	79.354500	223	569	2	chr1A.!!$R2	346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
507	860	0.387239	GCGTGCACTCCAAACATTCC	60.387	55.0	16.19	0.0	0.0	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2343	5182	0.393537	GGCTGTCCAGGTGAATGAGG	60.394	60.0	0.0	0.0	0.0	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	4.815040	TTTTCCGCGAACTGTAAATGAA	57.185	36.364	8.23	0.00	0.00	2.57
68	69	4.201485	CCGCGAACTGTAAATGAATTTTGC	60.201	41.667	8.23	0.00	0.00	3.68
74	75	1.923864	GTAAATGAATTTTGCGGGCCG	59.076	47.619	24.35	24.35	0.00	6.13
252	254	1.386533	AATCCCGAGCTCAAATGCTG	58.613	50.000	15.40	0.00	44.17	4.41
264	266	2.096335	TCAAATGCTGCTGCTATGAACG	59.904	45.455	17.00	0.00	40.48	3.95
270	272	2.614057	GCTGCTGCTATGAACGGTAAAT	59.386	45.455	8.53	0.00	36.03	1.40
272	274	4.786609	GCTGCTGCTATGAACGGTAAATTC	60.787	45.833	8.53	0.00	36.03	2.17
274	276	3.303132	GCTGCTATGAACGGTAAATTCGG	60.303	47.826	0.00	0.00	0.00	4.30
276	278	4.505808	TGCTATGAACGGTAAATTCGGAA	58.494	39.130	0.00	0.00	0.00	4.30
277	279	4.936411	TGCTATGAACGGTAAATTCGGAAA	59.064	37.500	0.00	0.00	0.00	3.13
278	280	5.411977	TGCTATGAACGGTAAATTCGGAAAA	59.588	36.000	0.00	0.00	0.00	2.29
279	281	6.072618	TGCTATGAACGGTAAATTCGGAAAAA	60.073	34.615	0.00	0.00	0.00	1.94
347	490	5.570344	TGTTTGAAGTGCATGCAAATTTTG	58.430	33.333	24.58	4.72	34.47	2.44
368	511	8.771920	TTTTGATCACGAGATAACATTGTAGT	57.228	30.769	0.00	0.00	33.72	2.73
377	520	6.075519	CGAGATAACATTGTAGTAAGTCGTGC	60.076	42.308	0.00	0.00	0.00	5.34
407	737	4.211794	ACAAATTCAAAGCTCCAAAATGCG	59.788	37.500	0.00	0.00	0.00	4.73
429	759	8.136057	TGCGTTTGAAAACAACATTTTCATAT	57.864	26.923	13.85	0.00	44.72	1.78
432	762	9.782028	CGTTTGAAAACAACATTTTCATATCAG	57.218	29.630	13.85	4.47	44.72	2.90
507	860	0.387239	GCGTGCACTCCAAACATTCC	60.387	55.000	16.19	0.00	0.00	3.01
584	1832	3.943381	TGTTCATAGCAGGAGCATTTGAG	59.057	43.478	0.00	0.00	45.49	3.02
586	1834	4.226427	TCATAGCAGGAGCATTTGAGTT	57.774	40.909	0.00	0.00	45.49	3.01
587	1835	4.194640	TCATAGCAGGAGCATTTGAGTTC	58.805	43.478	0.00	0.00	45.49	3.01
588	1836	1.446907	AGCAGGAGCATTTGAGTTCG	58.553	50.000	0.00	0.00	45.49	3.95
589	1837	1.002430	AGCAGGAGCATTTGAGTTCGA	59.998	47.619	0.00	0.00	45.49	3.71
590	1838	1.396301	GCAGGAGCATTTGAGTTCGAG	59.604	52.381	0.00	0.00	41.58	4.04
591	1839	2.932622	GCAGGAGCATTTGAGTTCGAGA	60.933	50.000	0.00	0.00	41.58	4.04
638	1886	1.549203	CAAACCCTGTCCATCTTGGG	58.451	55.000	0.00	0.00	44.89	4.12
695	2336	6.118170	CAGATTGGACAGAGAATATGGTTGT	58.882	40.000	0.00	0.00	0.00	3.32
708	2349	9.553064	GAGAATATGGTTGTCTTTGATCTATGT	57.447	33.333	0.00	0.00	0.00	2.29
883	3563	9.764363	TTAGTATTGTACTCAATCATCCACATC	57.236	33.333	0.00	0.00	42.45	3.06
888	3568	3.790091	ACTCAATCATCCACATCGACTG	58.210	45.455	0.00	0.00	0.00	3.51
896	3580	0.390340	CCACATCGACTGACTGGTGG	60.390	60.000	0.00	0.00	37.62	4.61
947	3681	4.260620	GGATGCTTCGCGTATAAAATGTGT	60.261	41.667	5.77	0.00	0.00	3.72
985	3728	5.275067	AGGAGTACTCAGCTTTGATCATC	57.725	43.478	23.91	2.30	0.00	2.92
2127	4931	1.969208	CGGAAAGGATAGACTACCCCC	59.031	57.143	0.00	0.00	0.00	5.40
2242	5046	1.739667	GCCATGGCGGGGATTTTAC	59.260	57.895	23.48	0.00	34.06	2.01
2337	5141	3.452627	AGAGATTCAACGGGCTGATTAGT	59.547	43.478	0.00	0.00	0.00	2.24
2343	5182	6.913873	TTCAACGGGCTGATTAGTTATTAC	57.086	37.500	0.00	0.00	0.00	1.89
2429	5271	2.290367	CAGTTGCTTGTTTGTCCGATGA	59.710	45.455	0.00	0.00	0.00	2.92
2498	5352	3.181510	GGTTGCCGTCAGCTGTTTTATAG	60.182	47.826	14.67	0.00	44.23	1.31
2503	5357	4.679905	GCCGTCAGCTGTTTTATAGTAGGT	60.680	45.833	14.67	0.00	38.99	3.08
2505	5359	6.567050	CCGTCAGCTGTTTTATAGTAGGTTA	58.433	40.000	14.67	0.00	0.00	2.85
2522	5377	3.056891	AGGTTATCATGTTTGGTTTGGCG	60.057	43.478	0.00	0.00	0.00	5.69
2524	5379	4.381505	GGTTATCATGTTTGGTTTGGCGAT	60.382	41.667	0.00	0.00	0.00	4.58
2525	5380	2.721274	TCATGTTTGGTTTGGCGATG	57.279	45.000	0.00	0.00	0.00	3.84
2526	5381	1.271934	TCATGTTTGGTTTGGCGATGG	59.728	47.619	0.00	0.00	0.00	3.51
2528	5383	1.982660	TGTTTGGTTTGGCGATGGTA	58.017	45.000	0.00	0.00	0.00	3.25
2529	5384	2.520069	TGTTTGGTTTGGCGATGGTAT	58.480	42.857	0.00	0.00	0.00	2.73
2531	5386	3.322254	TGTTTGGTTTGGCGATGGTATTT	59.678	39.130	0.00	0.00	0.00	1.40
2532	5387	3.859411	TTGGTTTGGCGATGGTATTTC	57.141	42.857	0.00	0.00	0.00	2.17
2545	5406	6.088350	GCGATGGTATTTCTTTCGTCTCTATC	59.912	42.308	0.00	0.00	32.65	2.08
2577	5438	6.276091	TGACAGTTCAATAAGATCATCTCCG	58.724	40.000	0.00	0.00	0.00	4.63
2582	5786	5.459536	TCAATAAGATCATCTCCGACAGG	57.540	43.478	0.00	0.00	39.46	4.00
2583	5787	4.281941	TCAATAAGATCATCTCCGACAGGG	59.718	45.833	0.00	0.00	38.33	4.45
2619	5823	3.606153	CGCGCTAAAAAGTAGTTTGCTGT	60.606	43.478	5.56	0.00	0.00	4.40
2633	5837	1.130613	GCTGTGCGTTCATCGTCAC	59.869	57.895	0.00	0.00	42.32	3.67
2689	5915	3.133814	GCTAAAATACAGCGCGCAG	57.866	52.632	35.10	28.90	0.00	5.18
2815	6245	8.812147	TTTTACATAGTTCATAGCATAGACGG	57.188	34.615	0.00	0.00	0.00	4.79
2937	6395	1.598601	GCTAGAACTACTCCGAGTCCG	59.401	57.143	3.74	0.27	0.00	4.79
2961	6419	2.108952	TCATCATCCTCATCCTCGGAGA	59.891	50.000	6.58	0.00	34.24	3.71
2968	6426	2.169352	CCTCATCCTCGGAGATGTTGTT	59.831	50.000	6.58	0.00	43.46	2.83
3044	6503	0.321564	TCCCACCTGCTTCAACGATG	60.322	55.000	0.00	0.00	0.00	3.84
3235	6697	2.819595	CAGCCGAACATGGTCCGG	60.820	66.667	14.84	14.84	45.51	5.14

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	3.918276	TATATCGCCGGCCCGCAAAAT	62.918	52.381	23.46	7.54	0.00	1.82
68	69	4.789075	CCGTATATCGCCGGCCCG	62.789	72.222	23.46	8.15	37.43	6.13
74	75	1.132643	CTAGCAGACCCGTATATCGCC	59.867	57.143	0.00	0.00	38.35	5.54
160	162	0.118952	AGAATGGGGGCATGGGTTTT	59.881	50.000	0.00	0.00	0.00	2.43
252	254	3.303132	CCGAATTTACCGTTCATAGCAGC	60.303	47.826	0.00	0.00	0.00	5.25
347	490	9.171701	GACTTACTACAATGTTATCTCGTGATC	57.828	37.037	2.72	0.00	34.32	2.92
393	723	3.451141	TTCAAACGCATTTTGGAGCTT	57.549	38.095	7.70	0.00	44.30	3.74
415	745	7.814107	ACAAAATCGCTGATATGAAAATGTTGT	59.186	29.630	9.52	0.00	0.00	3.32
416	746	8.176814	ACAAAATCGCTGATATGAAAATGTTG	57.823	30.769	9.52	0.00	0.00	3.33
461	792	4.604843	TTCATCACGAAATCACATCAGC	57.395	40.909	0.00	0.00	0.00	4.26
463	794	7.148771	GCAAAAATTCATCACGAAATCACATCA	60.149	33.333	0.00	0.00	37.12	3.07
573	1821	6.293135	GGATTAATCTCGAACTCAAATGCTCC	60.293	42.308	14.95	0.00	0.00	4.70
584	1832	3.871594	CCAGTGTGGGATTAATCTCGAAC	59.128	47.826	14.95	12.60	32.67	3.95
586	1834	3.371034	TCCAGTGTGGGATTAATCTCGA	58.629	45.455	14.95	0.20	38.32	4.04
587	1835	3.819564	TCCAGTGTGGGATTAATCTCG	57.180	47.619	14.95	0.00	38.32	4.04
638	1886	3.140814	GGGAGCACCAATTCGGGC	61.141	66.667	1.58	0.00	40.22	6.13
883	3563	1.003355	AATGCCCACCAGTCAGTCG	60.003	57.895	0.00	0.00	0.00	4.18
888	3568	0.323725	ATCCACAATGCCCACCAGTC	60.324	55.000	0.00	0.00	0.00	3.51
947	3681	1.138661	CTCCTTTTGCCCAGTTTGCAA	59.861	47.619	0.00	0.00	46.30	4.08
954	3688	2.704572	CTGAGTACTCCTTTTGCCCAG	58.295	52.381	20.11	4.36	0.00	4.45
985	3728	1.871676	CGCCATGGATGAACTGATCAG	59.128	52.381	21.37	21.37	42.53	2.90
1879	4680	1.153086	GGCAGTATCCACAGGCTGG	60.153	63.158	20.34	7.72	42.29	4.85
2127	4931	1.445410	TTGCGTCGAAGTCATCCCG	60.445	57.895	0.00	0.00	0.00	5.14
2242	5046	1.227823	TTGGACACCTTGACCAGCG	60.228	57.895	0.00	0.00	42.61	5.18
2244	5048	1.881973	CATGTTGGACACCTTGACCAG	59.118	52.381	0.00	0.00	42.61	4.00
2303	5107	3.632855	TGAATCTCTCGGACGATGATG	57.367	47.619	9.80	0.00	0.00	3.07
2310	5114	0.806492	GCCCGTTGAATCTCTCGGAC	60.806	60.000	11.25	0.00	44.86	4.79
2337	5141	5.629133	GCTGTCCAGGTGAATGAGGTAATAA	60.629	44.000	0.00	0.00	0.00	1.40
2343	5182	0.393537	GGCTGTCCAGGTGAATGAGG	60.394	60.000	0.00	0.00	0.00	3.86
2429	5271	2.045926	GAGGGCTGCACGGTCAAT	60.046	61.111	0.50	0.00	0.00	2.57
2498	5352	5.407502	GCCAAACCAAACATGATAACCTAC	58.592	41.667	0.00	0.00	0.00	3.18
2503	5357	4.381398	CCATCGCCAAACCAAACATGATAA	60.381	41.667	0.00	0.00	0.00	1.75
2505	5359	2.094078	CCATCGCCAAACCAAACATGAT	60.094	45.455	0.00	0.00	0.00	2.45
2515	5370	4.095610	CGAAAGAAATACCATCGCCAAAC	58.904	43.478	0.00	0.00	0.00	2.93
2522	5377	8.756864	GTTGATAGAGACGAAAGAAATACCATC	58.243	37.037	0.00	0.00	0.00	3.51
2524	5379	7.608153	TGTTGATAGAGACGAAAGAAATACCA	58.392	34.615	0.00	0.00	0.00	3.25
2525	5380	8.649973	ATGTTGATAGAGACGAAAGAAATACC	57.350	34.615	0.00	0.00	0.00	2.73
2529	5384	9.869757	TCATAATGTTGATAGAGACGAAAGAAA	57.130	29.630	0.00	0.00	0.00	2.52
2531	5386	8.466798	TGTCATAATGTTGATAGAGACGAAAGA	58.533	33.333	0.00	0.00	0.00	2.52
2532	5387	8.634475	TGTCATAATGTTGATAGAGACGAAAG	57.366	34.615	0.00	0.00	0.00	2.62
2569	5430	2.038813	TGCCCCTGTCGGAGATGA	59.961	61.111	0.00	0.00	40.67	2.92
2619	5823	0.231024	CAAACGTGACGATGAACGCA	59.769	50.000	13.70	0.00	46.94	5.24
2695	5921	1.801113	TTGCATTTTAGCGCGCTGC	60.801	52.632	41.85	34.63	46.98	5.25
2696	5922	1.723115	CGTTGCATTTTAGCGCGCTG	61.723	55.000	41.85	26.94	37.31	5.18
2697	5923	1.511887	CGTTGCATTTTAGCGCGCT	60.512	52.632	38.01	38.01	37.31	5.92
2698	5924	2.979036	CGTTGCATTTTAGCGCGC	59.021	55.556	26.66	26.66	37.31	6.86
2699	5925	2.979036	GCGTTGCATTTTAGCGCG	59.021	55.556	0.00	0.00	37.96	6.86
2700	5926	2.979036	CGCGTTGCATTTTAGCGC	59.021	55.556	0.00	0.00	44.19	5.92
2889	6347	6.028146	TCGTAGTTTTATCTAGTTGCACCA	57.972	37.500	0.00	0.00	0.00	4.17
2937	6395	2.619147	CGAGGATGAGGATGATGATGC	58.381	52.381	0.00	0.00	0.00	3.91
3112	6571	2.840102	CCTACTGGGCGGAGAGGG	60.840	72.222	0.00	0.00	0.00	4.30
3235	6697	0.105039	GATCACGGACCAGGACCATC	59.895	60.000	8.82	0.26	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.