Multiple sequence alignment - TraesCS3B01G112900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G112900 chr3B 100.000 5720 0 0 1 5720 79123595 79129314 0.000000e+00 10563.0
1 TraesCS3B01G112900 chr3B 97.638 254 6 0 2065 2318 588910085 588910338 2.450000e-118 436.0
2 TraesCS3B01G112900 chr3B 86.538 312 23 1 293 585 651409335 651409646 5.530000e-85 326.0
3 TraesCS3B01G112900 chr3D 96.494 1626 56 1 2318 3943 49643630 49645254 0.000000e+00 2686.0
4 TraesCS3B01G112900 chr3D 92.352 1569 90 20 757 2318 49642046 49643591 0.000000e+00 2206.0
5 TraesCS3B01G112900 chr3D 90.396 1312 70 26 4390 5670 49645979 49647265 0.000000e+00 1674.0
6 TraesCS3B01G112900 chr3D 95.320 406 15 4 3960 4361 49645378 49645783 4.830000e-180 641.0
7 TraesCS3B01G112900 chr3D 93.836 292 16 2 1 290 49641489 49641780 6.800000e-119 438.0
8 TraesCS3B01G112900 chr3D 87.821 312 19 2 293 585 77397806 77398117 1.180000e-91 348.0
9 TraesCS3B01G112900 chr3A 91.825 1786 90 25 3960 5714 63075118 63076878 0.000000e+00 2438.0
10 TraesCS3B01G112900 chr3A 93.491 1644 68 16 2322 3943 63073368 63074994 0.000000e+00 2407.0
11 TraesCS3B01G112900 chr3A 89.541 1568 111 32 757 2318 63071803 63073323 0.000000e+00 1938.0
12 TraesCS3B01G112900 chr3A 94.186 172 8 2 121 290 63071346 63071517 1.580000e-65 261.0
13 TraesCS3B01G112900 chr1A 85.009 527 63 10 1195 1721 276123679 276123169 6.570000e-144 521.0
14 TraesCS3B01G112900 chr7B 97.244 254 7 0 2065 2318 651561702 651561955 1.140000e-116 431.0
15 TraesCS3B01G112900 chr7B 97.244 254 7 0 2065 2318 651736714 651736967 1.140000e-116 431.0
16 TraesCS3B01G112900 chr6B 96.063 254 10 0 2065 2318 608038625 608038878 1.150000e-111 414.0
17 TraesCS3B01G112900 chr6B 96.226 53 2 0 2318 2370 608038917 608038969 2.840000e-13 87.9
18 TraesCS3B01G112900 chr7A 87.937 315 20 4 289 585 63571236 63571550 7.050000e-94 355.0
19 TraesCS3B01G112900 chr4A 88.179 313 18 2 292 585 507537493 507537181 7.050000e-94 355.0
20 TraesCS3B01G112900 chr4A 87.821 312 17 4 293 584 712114303 712114613 4.240000e-91 346.0
21 TraesCS3B01G112900 chr4A 86.817 311 21 3 293 584 712444410 712444101 4.270000e-86 329.0
22 TraesCS3B01G112900 chrUn 87.342 316 21 6 289 585 101160633 101160948 1.530000e-90 344.0
23 TraesCS3B01G112900 chrUn 83.221 298 35 7 1610 1906 46184763 46184480 5.690000e-65 259.0
24 TraesCS3B01G112900 chrUn 90.833 120 11 0 461 580 298893447 298893328 1.650000e-35 161.0
25 TraesCS3B01G112900 chr5D 87.302 315 20 3 289 585 496943313 496943625 5.490000e-90 342.0
26 TraesCS3B01G112900 chr5D 85.185 297 20 11 289 585 434608259 434608531 3.370000e-72 283.0
27 TraesCS3B01G112900 chr5B 89.668 271 21 2 1451 1721 664217258 664216995 7.100000e-89 339.0
28 TraesCS3B01G112900 chr2D 86.984 315 22 2 290 585 349300081 349300395 2.550000e-88 337.0
29 TraesCS3B01G112900 chr2A 76.993 552 83 29 1769 2318 480338845 480338336 5.650000e-70 276.0
30 TraesCS3B01G112900 chr2A 95.706 163 7 0 2156 2318 500244699 500244861 4.400000e-66 263.0
31 TraesCS3B01G112900 chr4B 81.605 299 40 10 1610 1907 60056911 60057195 3.450000e-57 233.0
32 TraesCS3B01G112900 chr4B 98.113 53 1 0 2318 2370 667298614 667298666 6.100000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G112900 chr3B 79123595 79129314 5719 False 10563 10563 100.00000 1 5720 1 chr3B.!!$F1 5719
1 TraesCS3B01G112900 chr3D 49641489 49647265 5776 False 1529 2686 93.67960 1 5670 5 chr3D.!!$F2 5669
2 TraesCS3B01G112900 chr3A 63071346 63076878 5532 False 1761 2438 92.26075 121 5714 4 chr3A.!!$F1 5593
3 TraesCS3B01G112900 chr1A 276123169 276123679 510 True 521 521 85.00900 1195 1721 1 chr1A.!!$R1 526
4 TraesCS3B01G112900 chr2A 480338336 480338845 509 True 276 276 76.99300 1769 2318 1 chr2A.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 486 0.044161 CGAACAAATCCGCGATCGAC 60.044 55.000 21.57 9.43 38.10 4.20 F
542 546 0.326927 ACACCATAAGGACAACGGGG 59.673 55.000 0.00 0.00 38.69 5.73 F
746 833 0.406361 TAACAAAATGGGCCTCGGGT 59.594 50.000 4.53 0.00 0.00 5.28 F
1924 2110 0.458889 GCGTGCCGGTATGTTACTGA 60.459 55.000 13.63 0.00 37.22 3.41 F
2675 2919 1.218316 GTCTAGTGAAGGTGGGGCG 59.782 63.158 0.00 0.00 0.00 6.13 F
2980 3224 1.805943 TGATTTCATGCGTGACACAGG 59.194 47.619 8.48 0.00 33.11 4.00 F
4254 4627 0.109597 CTGTTTCTGCGGTGAATGCC 60.110 55.000 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2286 1.024271 TTGTTCAGGTGACAAGCAGC 58.976 50.000 0.00 0.0 45.24 5.25 R
2527 2771 3.631144 TCTGAGAAAAAGCAAATGCACG 58.369 40.909 8.28 0.0 45.16 5.34 R
2720 2964 1.677576 CTTGCAAGAACAGGAAGCACA 59.322 47.619 22.31 0.0 34.56 4.57 R
2841 3085 1.294659 GAGCAGCAAGTTCTGGGTCG 61.295 60.000 0.00 0.0 34.74 4.79 R
4233 4606 1.001378 GCATTCACCGCAGAAACAGTT 60.001 47.619 0.00 0.0 0.00 3.16 R
4592 5137 1.029947 CAGCCATCTGCACATCAGCA 61.030 55.000 0.00 0.0 44.83 4.41 R
5375 5947 0.949105 AACTTCGGGTCGTGTGATGC 60.949 55.000 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.640184 CACTGCATGATCTGTGGTGAT 58.360 47.619 0.00 0.00 34.03 3.06
28 29 4.768448 TGCATGATCTGTGGTGATCTTTTT 59.232 37.500 0.00 0.00 42.30 1.94
30 31 6.127925 TGCATGATCTGTGGTGATCTTTTTAC 60.128 38.462 0.00 0.00 42.30 2.01
41 42 7.435192 GTGGTGATCTTTTTACCTTTCAGTTTG 59.565 37.037 0.00 0.00 35.51 2.93
42 43 7.123547 TGGTGATCTTTTTACCTTTCAGTTTGT 59.876 33.333 0.00 0.00 35.51 2.83
43 44 7.435192 GGTGATCTTTTTACCTTTCAGTTTGTG 59.565 37.037 0.00 0.00 0.00 3.33
66 68 8.049117 TGTGGTATAAGATGCATTTTTCTCTCT 58.951 33.333 7.89 0.00 0.00 3.10
75 77 4.202503 TGCATTTTTCTCTCTCTTGGGTCT 60.203 41.667 0.00 0.00 0.00 3.85
91 93 2.104792 GGGTCTCATATGCCAGTTGCTA 59.895 50.000 0.00 0.00 42.00 3.49
114 116 7.172703 GCTAAAGACAAGACTTGTTTAGGCTAA 59.827 37.037 26.46 2.04 43.32 3.09
139 142 3.306917 TGTTGAAGAAATGCATGCCAG 57.693 42.857 16.68 0.00 0.00 4.85
267 270 2.899900 GGATGGTGGGAAGCTTTCTTTT 59.100 45.455 4.35 0.00 31.48 2.27
304 308 9.676195 AAACAAACAAATTCTTTTTGACAAAGG 57.324 25.926 11.37 0.00 34.84 3.11
305 309 7.815641 ACAAACAAATTCTTTTTGACAAAGGG 58.184 30.769 11.37 0.00 34.84 3.95
306 310 7.446931 ACAAACAAATTCTTTTTGACAAAGGGT 59.553 29.630 11.37 0.00 34.84 4.34
307 311 6.983474 ACAAATTCTTTTTGACAAAGGGTG 57.017 33.333 0.10 0.00 33.83 4.61
308 312 5.879777 ACAAATTCTTTTTGACAAAGGGTGG 59.120 36.000 0.10 0.00 33.83 4.61
309 313 5.948742 AATTCTTTTTGACAAAGGGTGGA 57.051 34.783 0.10 0.00 0.00 4.02
310 314 6.499106 AATTCTTTTTGACAAAGGGTGGAT 57.501 33.333 0.10 0.00 0.00 3.41
311 315 5.948742 TTCTTTTTGACAAAGGGTGGATT 57.051 34.783 0.10 0.00 0.00 3.01
312 316 5.948742 TCTTTTTGACAAAGGGTGGATTT 57.051 34.783 0.10 0.00 0.00 2.17
313 317 6.306643 TCTTTTTGACAAAGGGTGGATTTT 57.693 33.333 0.10 0.00 0.00 1.82
314 318 7.425224 TCTTTTTGACAAAGGGTGGATTTTA 57.575 32.000 0.10 0.00 0.00 1.52
315 319 8.028652 TCTTTTTGACAAAGGGTGGATTTTAT 57.971 30.769 0.10 0.00 0.00 1.40
316 320 8.490311 TCTTTTTGACAAAGGGTGGATTTTATT 58.510 29.630 0.10 0.00 0.00 1.40
317 321 8.443953 TTTTTGACAAAGGGTGGATTTTATTG 57.556 30.769 0.10 0.00 0.00 1.90
318 322 6.985653 TTGACAAAGGGTGGATTTTATTGA 57.014 33.333 0.00 0.00 0.00 2.57
319 323 6.339587 TGACAAAGGGTGGATTTTATTGAC 57.660 37.500 0.00 0.00 0.00 3.18
320 324 6.074648 TGACAAAGGGTGGATTTTATTGACT 58.925 36.000 0.00 0.00 0.00 3.41
321 325 6.553100 TGACAAAGGGTGGATTTTATTGACTT 59.447 34.615 0.00 0.00 0.00 3.01
322 326 7.726291 TGACAAAGGGTGGATTTTATTGACTTA 59.274 33.333 0.00 0.00 0.00 2.24
323 327 8.485578 ACAAAGGGTGGATTTTATTGACTTAA 57.514 30.769 0.00 0.00 0.00 1.85
324 328 8.929487 ACAAAGGGTGGATTTTATTGACTTAAA 58.071 29.630 0.00 0.00 0.00 1.52
325 329 9.771534 CAAAGGGTGGATTTTATTGACTTAAAA 57.228 29.630 0.00 0.00 35.98 1.52
327 331 9.942850 AAGGGTGGATTTTATTGACTTAAAATG 57.057 29.630 6.85 0.00 40.25 2.32
328 332 9.320295 AGGGTGGATTTTATTGACTTAAAATGA 57.680 29.630 6.85 0.00 40.25 2.57
329 333 9.936759 GGGTGGATTTTATTGACTTAAAATGAA 57.063 29.630 6.85 0.00 40.25 2.57
340 344 8.578308 TTGACTTAAAATGAAGCATCAAGTTG 57.422 30.769 0.00 0.00 39.49 3.16
341 345 7.939782 TGACTTAAAATGAAGCATCAAGTTGA 58.060 30.769 8.27 8.27 39.49 3.18
342 346 8.579006 TGACTTAAAATGAAGCATCAAGTTGAT 58.421 29.630 12.75 12.75 39.49 2.57
344 348 9.846248 ACTTAAAATGAAGCATCAAGTTGATAC 57.154 29.630 17.86 12.72 39.49 2.24
345 349 9.844790 CTTAAAATGAAGCATCAAGTTGATACA 57.155 29.630 17.86 14.80 39.49 2.29
348 352 8.524870 AAATGAAGCATCAAGTTGATACAAAC 57.475 30.769 17.86 8.60 39.49 2.93
349 353 6.631971 TGAAGCATCAAGTTGATACAAACA 57.368 33.333 17.86 10.76 34.28 2.83
350 354 6.437928 TGAAGCATCAAGTTGATACAAACAC 58.562 36.000 17.86 7.16 34.28 3.32
351 355 5.034554 AGCATCAAGTTGATACAAACACG 57.965 39.130 17.86 4.81 34.28 4.49
352 356 4.754618 AGCATCAAGTTGATACAAACACGA 59.245 37.500 17.86 0.00 34.28 4.35
353 357 5.412594 AGCATCAAGTTGATACAAACACGAT 59.587 36.000 17.86 0.00 34.28 3.73
354 358 5.509272 GCATCAAGTTGATACAAACACGATG 59.491 40.000 17.86 4.39 40.43 3.84
355 359 6.620518 GCATCAAGTTGATACAAACACGATGA 60.621 38.462 17.86 5.63 40.18 2.92
356 360 6.466308 TCAAGTTGATACAAACACGATGAG 57.534 37.500 0.08 0.00 32.21 2.90
357 361 6.220201 TCAAGTTGATACAAACACGATGAGA 58.780 36.000 0.08 0.00 32.21 3.27
358 362 6.704050 TCAAGTTGATACAAACACGATGAGAA 59.296 34.615 0.08 0.00 32.21 2.87
359 363 6.467723 AGTTGATACAAACACGATGAGAAC 57.532 37.500 0.00 0.00 32.21 3.01
360 364 5.989168 AGTTGATACAAACACGATGAGAACA 59.011 36.000 0.00 0.00 32.21 3.18
361 365 5.839262 TGATACAAACACGATGAGAACAC 57.161 39.130 0.00 0.00 0.00 3.32
362 366 5.293560 TGATACAAACACGATGAGAACACA 58.706 37.500 0.00 0.00 0.00 3.72
363 367 3.944422 ACAAACACGATGAGAACACAC 57.056 42.857 0.00 0.00 0.00 3.82
364 368 2.612212 ACAAACACGATGAGAACACACC 59.388 45.455 0.00 0.00 0.00 4.16
365 369 1.878953 AACACGATGAGAACACACCC 58.121 50.000 0.00 0.00 0.00 4.61
366 370 0.319555 ACACGATGAGAACACACCCG 60.320 55.000 0.00 0.00 0.00 5.28
367 371 1.014044 CACGATGAGAACACACCCGG 61.014 60.000 0.00 0.00 0.00 5.73
368 372 2.100631 CGATGAGAACACACCCGGC 61.101 63.158 0.00 0.00 0.00 6.13
369 373 1.745489 GATGAGAACACACCCGGCC 60.745 63.158 0.00 0.00 0.00 6.13
370 374 2.185310 GATGAGAACACACCCGGCCT 62.185 60.000 0.00 0.00 0.00 5.19
371 375 2.047179 GAGAACACACCCGGCCTC 60.047 66.667 0.00 0.00 0.00 4.70
372 376 2.526873 AGAACACACCCGGCCTCT 60.527 61.111 0.00 0.00 0.00 3.69
373 377 2.358737 GAACACACCCGGCCTCTG 60.359 66.667 0.00 0.00 0.00 3.35
374 378 4.643387 AACACACCCGGCCTCTGC 62.643 66.667 0.00 0.00 0.00 4.26
376 380 4.415150 CACACCCGGCCTCTGCAT 62.415 66.667 0.00 0.00 40.13 3.96
377 381 2.687200 ACACCCGGCCTCTGCATA 60.687 61.111 0.00 0.00 40.13 3.14
378 382 2.297895 ACACCCGGCCTCTGCATAA 61.298 57.895 0.00 0.00 40.13 1.90
379 383 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
380 384 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
381 385 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
382 386 0.468226 CCCGGCCTCTGCATAACTAA 59.532 55.000 0.00 0.00 40.13 2.24
383 387 1.541233 CCCGGCCTCTGCATAACTAAG 60.541 57.143 0.00 0.00 40.13 2.18
384 388 1.412710 CCGGCCTCTGCATAACTAAGA 59.587 52.381 0.00 0.00 40.13 2.10
385 389 2.037772 CCGGCCTCTGCATAACTAAGAT 59.962 50.000 0.00 0.00 40.13 2.40
386 390 3.062763 CGGCCTCTGCATAACTAAGATG 58.937 50.000 0.00 0.00 40.13 2.90
402 406 2.755724 TGCACATAGGCAGCACCA 59.244 55.556 0.00 0.00 43.14 4.17
403 407 1.074599 TGCACATAGGCAGCACCAA 59.925 52.632 0.00 0.00 43.14 3.67
404 408 1.243342 TGCACATAGGCAGCACCAAC 61.243 55.000 0.00 0.00 43.14 3.77
405 409 1.243342 GCACATAGGCAGCACCAACA 61.243 55.000 0.00 0.00 43.14 3.33
406 410 0.523072 CACATAGGCAGCACCAACAC 59.477 55.000 0.00 0.00 43.14 3.32
407 411 0.110295 ACATAGGCAGCACCAACACA 59.890 50.000 0.00 0.00 43.14 3.72
408 412 0.523072 CATAGGCAGCACCAACACAC 59.477 55.000 0.00 0.00 43.14 3.82
409 413 0.110295 ATAGGCAGCACCAACACACA 59.890 50.000 0.00 0.00 43.14 3.72
410 414 0.817634 TAGGCAGCACCAACACACAC 60.818 55.000 0.00 0.00 43.14 3.82
411 415 2.413963 GGCAGCACCAACACACACA 61.414 57.895 0.00 0.00 38.86 3.72
412 416 1.510383 GCAGCACCAACACACACAA 59.490 52.632 0.00 0.00 0.00 3.33
413 417 0.102844 GCAGCACCAACACACACAAT 59.897 50.000 0.00 0.00 0.00 2.71
414 418 1.336440 GCAGCACCAACACACACAATA 59.664 47.619 0.00 0.00 0.00 1.90
415 419 2.223688 GCAGCACCAACACACACAATAA 60.224 45.455 0.00 0.00 0.00 1.40
416 420 3.371168 CAGCACCAACACACACAATAAC 58.629 45.455 0.00 0.00 0.00 1.89
417 421 2.360801 AGCACCAACACACACAATAACC 59.639 45.455 0.00 0.00 0.00 2.85
418 422 2.544903 GCACCAACACACACAATAACCC 60.545 50.000 0.00 0.00 0.00 4.11
419 423 1.950909 ACCAACACACACAATAACCCG 59.049 47.619 0.00 0.00 0.00 5.28
420 424 1.335506 CCAACACACACAATAACCCGC 60.336 52.381 0.00 0.00 0.00 6.13
421 425 1.606668 CAACACACACAATAACCCGCT 59.393 47.619 0.00 0.00 0.00 5.52
422 426 1.234821 ACACACACAATAACCCGCTG 58.765 50.000 0.00 0.00 0.00 5.18
423 427 0.521291 CACACACAATAACCCGCTGG 59.479 55.000 0.00 0.00 37.80 4.85
424 428 1.241315 ACACACAATAACCCGCTGGC 61.241 55.000 0.00 0.00 33.59 4.85
425 429 1.074072 ACACAATAACCCGCTGGCA 59.926 52.632 0.00 0.00 33.59 4.92
426 430 0.538516 ACACAATAACCCGCTGGCAA 60.539 50.000 0.00 0.00 33.59 4.52
427 431 0.600557 CACAATAACCCGCTGGCAAA 59.399 50.000 0.00 0.00 33.59 3.68
428 432 1.204467 CACAATAACCCGCTGGCAAAT 59.796 47.619 0.00 0.00 33.59 2.32
429 433 2.425312 CACAATAACCCGCTGGCAAATA 59.575 45.455 0.00 0.00 33.59 1.40
430 434 2.687935 ACAATAACCCGCTGGCAAATAG 59.312 45.455 0.00 0.00 33.59 1.73
431 435 1.318576 ATAACCCGCTGGCAAATAGC 58.681 50.000 0.00 0.00 44.65 2.97
448 452 7.930217 GCAAATAGCAAAGTCATATAAGACCA 58.070 34.615 4.52 0.00 44.79 4.02
449 453 8.405531 GCAAATAGCAAAGTCATATAAGACCAA 58.594 33.333 4.52 0.00 44.79 3.67
458 462 8.854614 AAGTCATATAAGACCAAATCTATGCC 57.145 34.615 4.52 0.00 39.34 4.40
459 463 8.212259 AGTCATATAAGACCAAATCTATGCCT 57.788 34.615 4.52 0.00 39.34 4.75
460 464 9.326489 AGTCATATAAGACCAAATCTATGCCTA 57.674 33.333 4.52 0.00 39.34 3.93
461 465 9.944376 GTCATATAAGACCAAATCTATGCCTAA 57.056 33.333 0.00 0.00 36.27 2.69
463 467 8.887717 CATATAAGACCAAATCTATGCCTAAGC 58.112 37.037 0.00 0.00 36.27 3.09
464 468 3.733337 AGACCAAATCTATGCCTAAGCG 58.267 45.455 0.00 0.00 37.67 4.68
465 469 3.388024 AGACCAAATCTATGCCTAAGCGA 59.612 43.478 0.00 0.00 37.67 4.93
466 470 4.127171 GACCAAATCTATGCCTAAGCGAA 58.873 43.478 0.00 0.00 44.31 4.70
467 471 3.877508 ACCAAATCTATGCCTAAGCGAAC 59.122 43.478 0.00 0.00 44.31 3.95
468 472 3.876914 CCAAATCTATGCCTAAGCGAACA 59.123 43.478 0.00 0.00 44.31 3.18
469 473 4.335315 CCAAATCTATGCCTAAGCGAACAA 59.665 41.667 0.00 0.00 44.31 2.83
470 474 5.163663 CCAAATCTATGCCTAAGCGAACAAA 60.164 40.000 0.00 0.00 44.31 2.83
471 475 6.460123 CCAAATCTATGCCTAAGCGAACAAAT 60.460 38.462 0.00 0.00 44.31 2.32
472 476 5.931441 ATCTATGCCTAAGCGAACAAATC 57.069 39.130 0.00 0.00 44.31 2.17
473 477 4.127171 TCTATGCCTAAGCGAACAAATCC 58.873 43.478 0.00 0.00 44.31 3.01
474 478 1.083489 TGCCTAAGCGAACAAATCCG 58.917 50.000 0.00 0.00 44.31 4.18
479 483 4.571257 GCGAACAAATCCGCGATC 57.429 55.556 8.23 0.00 42.02 3.69
480 484 1.366494 GCGAACAAATCCGCGATCG 60.366 57.895 11.69 11.69 42.02 3.69
481 485 1.748647 GCGAACAAATCCGCGATCGA 61.749 55.000 21.57 0.00 42.02 3.59
482 486 0.044161 CGAACAAATCCGCGATCGAC 60.044 55.000 21.57 9.43 38.10 4.20
483 487 0.996462 GAACAAATCCGCGATCGACA 59.004 50.000 21.57 0.77 38.10 4.35
484 488 1.392168 GAACAAATCCGCGATCGACAA 59.608 47.619 21.57 2.39 38.10 3.18
485 489 1.434555 ACAAATCCGCGATCGACAAA 58.565 45.000 21.57 0.35 38.10 2.83
486 490 1.127951 ACAAATCCGCGATCGACAAAC 59.872 47.619 21.57 0.00 38.10 2.93
487 491 1.393539 CAAATCCGCGATCGACAAACT 59.606 47.619 21.57 0.00 38.10 2.66
488 492 2.572191 AATCCGCGATCGACAAACTA 57.428 45.000 21.57 0.00 38.10 2.24
489 493 1.836383 ATCCGCGATCGACAAACTAC 58.164 50.000 21.57 0.00 38.10 2.73
490 494 0.522626 TCCGCGATCGACAAACTACA 59.477 50.000 21.57 0.00 38.10 2.74
491 495 1.068402 TCCGCGATCGACAAACTACAA 60.068 47.619 21.57 0.00 38.10 2.41
492 496 1.058695 CCGCGATCGACAAACTACAAC 59.941 52.381 21.57 0.00 38.10 3.32
493 497 1.717113 CGCGATCGACAAACTACAACA 59.283 47.619 21.57 0.00 38.10 3.33
494 498 2.154198 CGCGATCGACAAACTACAACAA 59.846 45.455 21.57 0.00 38.10 2.83
495 499 3.181534 CGCGATCGACAAACTACAACAAT 60.182 43.478 21.57 0.00 38.10 2.71
496 500 4.081761 GCGATCGACAAACTACAACAATG 58.918 43.478 21.57 0.00 0.00 2.82
497 501 4.637968 CGATCGACAAACTACAACAATGG 58.362 43.478 10.26 0.00 0.00 3.16
498 502 3.889196 TCGACAAACTACAACAATGGC 57.111 42.857 0.00 0.00 0.00 4.40
499 503 3.472652 TCGACAAACTACAACAATGGCT 58.527 40.909 0.00 0.00 0.00 4.75
500 504 4.633175 TCGACAAACTACAACAATGGCTA 58.367 39.130 0.00 0.00 0.00 3.93
501 505 5.242434 TCGACAAACTACAACAATGGCTAT 58.758 37.500 0.00 0.00 0.00 2.97
502 506 6.399743 TCGACAAACTACAACAATGGCTATA 58.600 36.000 0.00 0.00 0.00 1.31
503 507 7.045416 TCGACAAACTACAACAATGGCTATAT 58.955 34.615 0.00 0.00 0.00 0.86
504 508 7.223971 TCGACAAACTACAACAATGGCTATATC 59.776 37.037 0.00 0.00 0.00 1.63
505 509 7.518370 CGACAAACTACAACAATGGCTATATCC 60.518 40.741 0.00 0.00 0.00 2.59
506 510 7.116075 ACAAACTACAACAATGGCTATATCCA 58.884 34.615 0.00 0.00 40.97 3.41
508 512 9.283768 CAAACTACAACAATGGCTATATCCATA 57.716 33.333 8.51 0.00 45.64 2.74
509 513 8.848474 AACTACAACAATGGCTATATCCATAC 57.152 34.615 8.51 0.00 45.64 2.39
510 514 7.394816 ACTACAACAATGGCTATATCCATACC 58.605 38.462 8.51 0.00 45.64 2.73
511 515 6.199557 ACAACAATGGCTATATCCATACCA 57.800 37.500 8.51 0.00 45.64 3.25
512 516 6.609876 ACAACAATGGCTATATCCATACCAA 58.390 36.000 8.51 0.00 45.64 3.67
513 517 6.490040 ACAACAATGGCTATATCCATACCAAC 59.510 38.462 8.51 0.00 45.64 3.77
514 518 5.570320 ACAATGGCTATATCCATACCAACC 58.430 41.667 8.51 0.00 45.64 3.77
515 519 5.074377 ACAATGGCTATATCCATACCAACCA 59.926 40.000 8.51 0.00 45.64 3.67
516 520 6.189859 CAATGGCTATATCCATACCAACCAT 58.810 40.000 8.51 0.00 45.64 3.55
517 521 5.435686 TGGCTATATCCATACCAACCATC 57.564 43.478 0.00 0.00 0.00 3.51
518 522 5.100811 TGGCTATATCCATACCAACCATCT 58.899 41.667 0.00 0.00 0.00 2.90
519 523 5.189736 TGGCTATATCCATACCAACCATCTC 59.810 44.000 0.00 0.00 0.00 2.75
520 524 5.189736 GGCTATATCCATACCAACCATCTCA 59.810 44.000 0.00 0.00 0.00 3.27
521 525 6.126652 GGCTATATCCATACCAACCATCTCAT 60.127 42.308 0.00 0.00 0.00 2.90
522 526 6.765036 GCTATATCCATACCAACCATCTCATG 59.235 42.308 0.00 0.00 0.00 3.07
523 527 6.957853 ATATCCATACCAACCATCTCATGA 57.042 37.500 0.00 0.00 0.00 3.07
524 528 4.422073 TCCATACCAACCATCTCATGAC 57.578 45.455 0.00 0.00 0.00 3.06
525 529 3.779738 TCCATACCAACCATCTCATGACA 59.220 43.478 0.00 0.00 0.00 3.58
526 530 3.879295 CCATACCAACCATCTCATGACAC 59.121 47.826 0.00 0.00 0.00 3.67
527 531 2.496899 ACCAACCATCTCATGACACC 57.503 50.000 0.00 0.00 0.00 4.16
528 532 1.704628 ACCAACCATCTCATGACACCA 59.295 47.619 0.00 0.00 0.00 4.17
529 533 2.309755 ACCAACCATCTCATGACACCAT 59.690 45.455 0.00 0.00 0.00 3.55
530 534 3.523157 ACCAACCATCTCATGACACCATA 59.477 43.478 0.00 0.00 0.00 2.74
531 535 4.018506 ACCAACCATCTCATGACACCATAA 60.019 41.667 0.00 0.00 0.00 1.90
532 536 4.577693 CCAACCATCTCATGACACCATAAG 59.422 45.833 0.00 0.00 0.00 1.73
533 537 4.428294 ACCATCTCATGACACCATAAGG 57.572 45.455 0.00 0.00 42.21 2.69
534 538 4.040047 ACCATCTCATGACACCATAAGGA 58.960 43.478 0.00 0.00 38.69 3.36
535 539 4.141620 ACCATCTCATGACACCATAAGGAC 60.142 45.833 0.00 0.00 38.69 3.85
536 540 4.141642 CCATCTCATGACACCATAAGGACA 60.142 45.833 0.00 0.00 38.69 4.02
537 541 5.430886 CATCTCATGACACCATAAGGACAA 58.569 41.667 0.00 0.00 38.69 3.18
538 542 4.832248 TCTCATGACACCATAAGGACAAC 58.168 43.478 0.00 0.00 38.69 3.32
539 543 3.595173 TCATGACACCATAAGGACAACG 58.405 45.455 0.00 0.00 38.69 4.10
540 544 2.465860 TGACACCATAAGGACAACGG 57.534 50.000 0.00 0.00 38.69 4.44
541 545 1.002659 TGACACCATAAGGACAACGGG 59.997 52.381 0.00 0.00 38.69 5.28
542 546 0.326927 ACACCATAAGGACAACGGGG 59.673 55.000 0.00 0.00 38.69 5.73
543 547 0.326927 CACCATAAGGACAACGGGGT 59.673 55.000 0.00 0.00 38.69 4.95
544 548 1.069775 ACCATAAGGACAACGGGGTT 58.930 50.000 0.00 0.00 38.69 4.11
545 549 1.003928 ACCATAAGGACAACGGGGTTC 59.996 52.381 0.00 0.00 38.69 3.62
546 550 1.280998 CCATAAGGACAACGGGGTTCT 59.719 52.381 0.00 0.00 36.89 3.01
547 551 2.290705 CCATAAGGACAACGGGGTTCTT 60.291 50.000 7.34 7.34 39.84 2.52
548 552 2.845363 TAAGGACAACGGGGTTCTTC 57.155 50.000 5.63 0.00 37.73 2.87
549 553 0.841289 AAGGACAACGGGGTTCTTCA 59.159 50.000 0.00 0.00 30.67 3.02
550 554 0.841289 AGGACAACGGGGTTCTTCAA 59.159 50.000 0.00 0.00 0.00 2.69
551 555 0.949397 GGACAACGGGGTTCTTCAAC 59.051 55.000 0.00 0.00 0.00 3.18
552 556 1.670791 GACAACGGGGTTCTTCAACA 58.329 50.000 0.00 0.00 33.70 3.33
553 557 2.018515 GACAACGGGGTTCTTCAACAA 58.981 47.619 0.00 0.00 33.70 2.83
554 558 1.746787 ACAACGGGGTTCTTCAACAAC 59.253 47.619 0.00 0.00 33.70 3.32
555 559 1.746220 CAACGGGGTTCTTCAACAACA 59.254 47.619 0.00 0.00 33.70 3.33
556 560 2.131776 ACGGGGTTCTTCAACAACAA 57.868 45.000 0.00 0.00 33.70 2.83
557 561 1.746787 ACGGGGTTCTTCAACAACAAC 59.253 47.619 0.00 0.00 33.70 3.32
558 562 1.268335 CGGGGTTCTTCAACAACAACG 60.268 52.381 0.00 0.00 33.70 4.10
559 563 1.535226 GGGGTTCTTCAACAACAACGC 60.535 52.381 0.00 0.00 33.70 4.84
560 564 1.535226 GGGTTCTTCAACAACAACGCC 60.535 52.381 0.00 0.00 33.70 5.68
561 565 1.404035 GGTTCTTCAACAACAACGCCT 59.596 47.619 0.00 0.00 33.70 5.52
562 566 2.159296 GGTTCTTCAACAACAACGCCTT 60.159 45.455 0.00 0.00 33.70 4.35
563 567 3.105937 GTTCTTCAACAACAACGCCTTC 58.894 45.455 0.00 0.00 32.14 3.46
564 568 2.360844 TCTTCAACAACAACGCCTTCA 58.639 42.857 0.00 0.00 0.00 3.02
565 569 2.948979 TCTTCAACAACAACGCCTTCAT 59.051 40.909 0.00 0.00 0.00 2.57
566 570 2.772568 TCAACAACAACGCCTTCATG 57.227 45.000 0.00 0.00 0.00 3.07
567 571 2.293170 TCAACAACAACGCCTTCATGA 58.707 42.857 0.00 0.00 0.00 3.07
568 572 2.685388 TCAACAACAACGCCTTCATGAA 59.315 40.909 8.12 8.12 0.00 2.57
569 573 3.044986 CAACAACAACGCCTTCATGAAG 58.955 45.455 25.75 25.75 38.14 3.02
579 583 0.942962 CTTCATGAAGGGAGCGATGC 59.057 55.000 25.14 0.00 34.87 3.91
580 584 0.543277 TTCATGAAGGGAGCGATGCT 59.457 50.000 3.38 0.00 43.88 3.79
589 593 3.863681 GAGCGATGCTCGAGAGAAT 57.136 52.632 18.75 5.97 45.85 2.40
590 594 1.685302 GAGCGATGCTCGAGAGAATC 58.315 55.000 18.75 14.00 45.85 2.52
591 595 1.317613 AGCGATGCTCGAGAGAATCT 58.682 50.000 18.75 3.83 42.55 2.40
592 596 2.482336 GAGCGATGCTCGAGAGAATCTA 59.518 50.000 18.75 0.00 46.46 1.98
593 597 2.881513 AGCGATGCTCGAGAGAATCTAA 59.118 45.455 18.75 0.00 39.94 2.10
594 598 3.316588 AGCGATGCTCGAGAGAATCTAAA 59.683 43.478 18.75 0.00 39.94 1.85
595 599 4.202060 AGCGATGCTCGAGAGAATCTAAAA 60.202 41.667 18.75 0.00 39.94 1.52
596 600 6.240569 AGCGATGCTCGAGAGAATCTAAAAC 61.241 44.000 18.75 0.00 39.94 2.43
597 601 8.553681 AGCGATGCTCGAGAGAATCTAAAACA 62.554 42.308 18.75 0.00 39.94 2.83
598 602 9.910480 AGCGATGCTCGAGAGAATCTAAAACAA 62.910 40.741 18.75 0.00 39.94 2.83
743 830 3.866883 ACATTAACAAAATGGGCCTCG 57.133 42.857 4.53 0.00 32.14 4.63
746 833 0.406361 TAACAAAATGGGCCTCGGGT 59.594 50.000 4.53 0.00 0.00 5.28
754 841 3.407967 GGCCTCGGGTCCCATCAA 61.408 66.667 9.12 0.00 0.00 2.57
755 842 2.757124 GGCCTCGGGTCCCATCAAT 61.757 63.158 9.12 0.00 0.00 2.57
929 1094 4.809496 CCGCCATTGCTCCTGCCT 62.809 66.667 0.00 0.00 38.71 4.75
930 1095 3.207669 CGCCATTGCTCCTGCCTC 61.208 66.667 0.00 0.00 38.71 4.70
932 1097 3.004951 CCATTGCTCCTGCCTCCT 58.995 61.111 0.00 0.00 38.71 3.69
933 1098 1.453379 CCATTGCTCCTGCCTCCTG 60.453 63.158 0.00 0.00 38.71 3.86
934 1099 1.453379 CATTGCTCCTGCCTCCTGG 60.453 63.158 0.00 0.00 38.71 4.45
935 1100 1.927527 ATTGCTCCTGCCTCCTGGT 60.928 57.895 0.00 0.00 38.71 4.00
936 1101 1.919600 ATTGCTCCTGCCTCCTGGTC 61.920 60.000 0.00 0.00 38.71 4.02
937 1102 2.686835 GCTCCTGCCTCCTGGTCT 60.687 66.667 0.00 0.00 35.27 3.85
938 1103 2.730524 GCTCCTGCCTCCTGGTCTC 61.731 68.421 0.00 0.00 35.27 3.36
939 1104 2.039624 TCCTGCCTCCTGGTCTCC 59.960 66.667 0.00 0.00 35.27 3.71
940 1105 2.040278 CCTGCCTCCTGGTCTCCT 59.960 66.667 0.00 0.00 35.27 3.69
979 1144 2.092429 AGAAGAGAGAGCGAGATCCACT 60.092 50.000 0.00 0.00 0.00 4.00
1209 1374 1.347817 CTCGCCGTCTCTGTTCTTGC 61.348 60.000 0.00 0.00 0.00 4.01
1222 1387 5.010282 TCTGTTCTTGCCTTTATTTCCCTC 58.990 41.667 0.00 0.00 0.00 4.30
1227 1392 1.280710 TGCCTTTATTTCCCTCTCGCA 59.719 47.619 0.00 0.00 0.00 5.10
1239 1404 3.264897 CTCGCATGCCAGTACGCC 61.265 66.667 13.15 0.00 0.00 5.68
1272 1437 0.968901 TTATCCACTCGCGGTCTGGT 60.969 55.000 6.13 2.65 0.00 4.00
1293 1458 2.668550 GCGTCTGCCGGTTTCCTT 60.669 61.111 1.90 0.00 36.94 3.36
1302 1467 1.164041 CCGGTTTCCTTTGCGTCAGT 61.164 55.000 0.00 0.00 0.00 3.41
1333 1502 7.239763 TGTTATAGATTAATCGGCCTCATCA 57.760 36.000 9.78 1.79 0.00 3.07
1414 1583 6.208797 ACTGTAAAAGGGGAAAAGTGATTAGC 59.791 38.462 0.00 0.00 0.00 3.09
1416 1585 6.551601 TGTAAAAGGGGAAAAGTGATTAGCAA 59.448 34.615 0.00 0.00 0.00 3.91
1447 1622 9.842775 ATGAATAGAATGTAGAAGAATGCTTGA 57.157 29.630 0.00 0.00 33.61 3.02
1448 1623 9.322773 TGAATAGAATGTAGAAGAATGCTTGAG 57.677 33.333 0.00 0.00 33.61 3.02
1449 1624 9.539825 GAATAGAATGTAGAAGAATGCTTGAGA 57.460 33.333 0.00 0.00 33.61 3.27
1488 1664 1.342672 ACGGATTTATGGCGGGGAGT 61.343 55.000 0.00 0.00 0.00 3.85
1563 1745 7.255590 GGAGATTTCAAATTGTCTTTCACCAGA 60.256 37.037 0.00 0.00 0.00 3.86
1590 1774 6.920569 AACGAGATTTCTTACACTGTGTTT 57.079 33.333 19.73 0.00 0.00 2.83
1721 1905 0.906775 CCGGGGCTTTCAAGGTACTA 59.093 55.000 0.00 0.00 38.49 1.82
1722 1906 1.406477 CCGGGGCTTTCAAGGTACTAC 60.406 57.143 0.00 0.00 38.49 2.73
1723 1907 1.553704 CGGGGCTTTCAAGGTACTACT 59.446 52.381 0.00 0.00 38.49 2.57
1724 1908 2.677037 CGGGGCTTTCAAGGTACTACTG 60.677 54.545 0.00 0.00 38.49 2.74
1745 1929 3.065655 GACATGACTCTGCTGATATGCC 58.934 50.000 0.00 0.46 0.00 4.40
1788 1973 5.237344 GTGCCTTCTTATGCTTACCTGTATG 59.763 44.000 0.00 0.00 0.00 2.39
1799 1985 5.825679 TGCTTACCTGTATGAACACTGTTTT 59.174 36.000 0.00 0.00 0.00 2.43
1852 2038 4.074970 AGTTCACAGATTTCTCGCCATTT 58.925 39.130 0.00 0.00 0.00 2.32
1879 2065 3.036084 CACCCGTGTGACTCGCAC 61.036 66.667 12.04 12.04 45.76 5.34
1923 2109 0.738063 TGCGTGCCGGTATGTTACTG 60.738 55.000 13.63 0.00 34.81 2.74
1924 2110 0.458889 GCGTGCCGGTATGTTACTGA 60.459 55.000 13.63 0.00 37.22 3.41
1928 2114 3.737047 CGTGCCGGTATGTTACTGAATCT 60.737 47.826 1.90 0.00 37.22 2.40
1967 2159 7.689299 TCCCATTTTCTGATCAGTTCTAGAAA 58.311 34.615 21.92 11.39 37.37 2.52
1969 2161 8.964772 CCCATTTTCTGATCAGTTCTAGAAATT 58.035 33.333 21.92 8.17 38.50 1.82
1995 2187 2.375014 ACAAAGGGTTGGTTAGTGGG 57.625 50.000 0.00 0.00 39.22 4.61
2071 2264 1.229658 CTGGAGTCTTCCCCTGGGT 60.230 63.158 12.71 0.00 43.33 4.51
2077 2270 1.229529 TCTTCCCCTGGGTCTGACC 60.230 63.158 18.65 18.65 37.60 4.02
2188 2381 7.865875 TGTCATGTTTGTTACAATAATGCAC 57.134 32.000 12.72 11.98 40.89 4.57
2195 2388 8.075574 TGTTTGTTACAATAATGCACTCTCTTG 58.924 33.333 0.00 0.00 32.64 3.02
2350 2594 7.506114 TCTAGTGTGTATCTGTTTCTGGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
2378 2622 7.877097 AGTTCATCTAGCATTTGATAGCCTAAG 59.123 37.037 0.00 0.00 34.27 2.18
2527 2771 6.657541 TGAAGGGTTTGGTTATCTGACATAAC 59.342 38.462 0.00 0.00 34.63 1.89
2605 2849 2.531522 AATGCCAGCAAGTGAAAACC 57.468 45.000 0.00 0.00 0.00 3.27
2675 2919 1.218316 GTCTAGTGAAGGTGGGGCG 59.782 63.158 0.00 0.00 0.00 6.13
2835 3079 5.606749 TGTTGCTGAGTTCATAGGGGTATAT 59.393 40.000 0.00 0.00 0.00 0.86
2841 3085 7.982354 GCTGAGTTCATAGGGGTATATACATTC 59.018 40.741 14.70 3.84 0.00 2.67
2898 3142 9.948964 TCGGATGATATAATGTTTGATCTCATT 57.051 29.630 12.91 12.91 37.85 2.57
2980 3224 1.805943 TGATTTCATGCGTGACACAGG 59.194 47.619 8.48 0.00 33.11 4.00
3002 3246 9.851686 ACAGGAACTTGAATTTCTATGCATATA 57.148 29.630 6.92 0.00 34.60 0.86
3143 3387 5.711976 AGGTGAATTTATGACCTTGAACTGG 59.288 40.000 0.00 0.00 36.68 4.00
3148 3392 8.700051 TGAATTTATGACCTTGAACTGGAAAAA 58.300 29.630 0.00 0.00 0.00 1.94
3149 3393 8.887036 AATTTATGACCTTGAACTGGAAAAAC 57.113 30.769 0.00 0.00 0.00 2.43
3201 3445 7.786046 TTTCCTCCTAGTAACATACAGAACA 57.214 36.000 0.00 0.00 0.00 3.18
3310 3570 2.270434 TAGGGAAAGATGACCTGGCT 57.730 50.000 0.00 0.00 35.84 4.75
3359 3619 9.647918 TTCTATCCAGAGTATGTCTTATCACTT 57.352 33.333 0.00 0.00 30.64 3.16
3361 3621 6.378710 TCCAGAGTATGTCTTATCACTTCG 57.621 41.667 0.00 0.00 30.64 3.79
3388 3648 3.306973 GCTTTCTTTTCGTGCTTTTTGCT 59.693 39.130 0.00 0.00 43.37 3.91
3392 3652 4.844267 TCTTTTCGTGCTTTTTGCTAGAC 58.156 39.130 0.00 0.00 43.37 2.59
3411 3671 8.293867 TGCTAGACATTTTGTATGTTGGTTTAC 58.706 33.333 0.00 0.00 31.52 2.01
3649 3909 6.893020 AAGGATAACAAGTCAGGAAGGTAT 57.107 37.500 0.00 0.00 0.00 2.73
3671 3931 4.743493 TGTCCTGTTCAGTTTCTTTTTGC 58.257 39.130 0.00 0.00 0.00 3.68
3724 3988 3.117888 TCCTTGCCTTTATTGGGAGCTAG 60.118 47.826 0.00 0.00 0.00 3.42
3761 4025 6.036470 GCTCTTCATAAAATTTGGTGTAGGC 58.964 40.000 0.00 0.86 0.00 3.93
3905 4169 7.716560 TGATGGAGTCACAGATGGTAATAATTG 59.283 37.037 0.00 0.00 0.00 2.32
3951 4215 9.935241 GACATGATACATATAAGATCCAACAGT 57.065 33.333 0.00 0.00 0.00 3.55
3952 4216 9.716531 ACATGATACATATAAGATCCAACAGTG 57.283 33.333 0.00 0.00 0.00 3.66
3953 4217 9.933723 CATGATACATATAAGATCCAACAGTGA 57.066 33.333 0.00 0.00 0.00 3.41
4027 4399 5.411361 ACTGCGCACATCTAAAGTGAATTAA 59.589 36.000 5.66 0.00 39.30 1.40
4197 4570 7.288621 ACTCTTTCTGAGGGAAAATCAAACATT 59.711 33.333 0.00 0.00 46.72 2.71
4233 4606 2.614481 GGTAGTGCCTTTTCGTCCATCA 60.614 50.000 0.00 0.00 0.00 3.07
4254 4627 0.109597 CTGTTTCTGCGGTGAATGCC 60.110 55.000 0.00 0.00 0.00 4.40
4260 4633 2.244436 CTGCGGTGAATGCCACTTCG 62.244 60.000 0.00 0.00 45.03 3.79
4347 4720 5.556915 CCTGAGATTTACCAGGTAACAACA 58.443 41.667 11.97 8.97 43.71 3.33
4349 4722 6.659242 CCTGAGATTTACCAGGTAACAACAAT 59.341 38.462 11.97 2.36 43.71 2.71
4350 4723 7.148239 CCTGAGATTTACCAGGTAACAACAATC 60.148 40.741 11.97 11.43 43.71 2.67
4351 4724 6.657541 TGAGATTTACCAGGTAACAACAATCC 59.342 38.462 11.97 6.92 41.41 3.01
4353 4726 5.327737 TTTACCAGGTAACAACAATCCCT 57.672 39.130 11.97 0.00 41.41 4.20
4354 4727 3.895704 ACCAGGTAACAACAATCCCTT 57.104 42.857 0.00 0.00 41.41 3.95
4355 4728 3.496331 ACCAGGTAACAACAATCCCTTG 58.504 45.455 0.00 0.00 41.41 3.61
4379 4914 6.040278 TGTTCCACTATCTAGCAGATTCAGAG 59.960 42.308 4.35 0.07 36.20 3.35
4380 4915 4.522405 TCCACTATCTAGCAGATTCAGAGC 59.478 45.833 4.35 0.00 36.20 4.09
4381 4916 4.523943 CCACTATCTAGCAGATTCAGAGCT 59.476 45.833 4.35 0.00 42.14 4.09
4389 4924 4.193090 AGCAGATTCAGAGCTTTCAGATG 58.807 43.478 0.00 0.00 34.37 2.90
4390 4925 3.940221 GCAGATTCAGAGCTTTCAGATGT 59.060 43.478 0.00 0.00 0.00 3.06
4392 4927 5.106237 GCAGATTCAGAGCTTTCAGATGTTT 60.106 40.000 0.00 0.00 0.00 2.83
4393 4928 6.315551 CAGATTCAGAGCTTTCAGATGTTTG 58.684 40.000 0.00 0.00 0.00 2.93
4394 4929 4.494350 TTCAGAGCTTTCAGATGTTTGC 57.506 40.909 0.00 0.00 0.00 3.68
4396 4931 2.225019 CAGAGCTTTCAGATGTTTGCGT 59.775 45.455 0.00 0.00 0.00 5.24
4397 4932 2.225019 AGAGCTTTCAGATGTTTGCGTG 59.775 45.455 0.00 0.00 0.00 5.34
4398 4933 1.055338 GCTTTCAGATGTTTGCGTGC 58.945 50.000 0.00 0.00 0.00 5.34
4399 4934 1.600164 GCTTTCAGATGTTTGCGTGCA 60.600 47.619 0.00 0.00 0.00 4.57
4400 4935 2.923605 GCTTTCAGATGTTTGCGTGCAT 60.924 45.455 0.00 0.00 0.00 3.96
4401 4936 2.334971 TTCAGATGTTTGCGTGCATG 57.665 45.000 0.09 0.09 0.00 4.06
4402 4937 0.522626 TCAGATGTTTGCGTGCATGG 59.477 50.000 8.27 0.00 0.00 3.66
4404 4939 0.961019 AGATGTTTGCGTGCATGGTT 59.039 45.000 8.27 0.00 0.00 3.67
4405 4940 1.340889 AGATGTTTGCGTGCATGGTTT 59.659 42.857 8.27 0.00 0.00 3.27
4406 4941 2.556189 AGATGTTTGCGTGCATGGTTTA 59.444 40.909 8.27 0.00 0.00 2.01
4407 4942 2.126914 TGTTTGCGTGCATGGTTTAC 57.873 45.000 8.27 0.00 0.00 2.01
4409 4944 1.784283 GTTTGCGTGCATGGTTTACAC 59.216 47.619 8.27 0.00 0.00 2.90
4410 4945 1.313772 TTGCGTGCATGGTTTACACT 58.686 45.000 8.27 0.00 32.07 3.55
4411 4946 0.590682 TGCGTGCATGGTTTACACTG 59.409 50.000 8.27 0.00 32.07 3.66
4413 4948 1.801771 GCGTGCATGGTTTACACTGTA 59.198 47.619 8.27 0.00 32.07 2.74
4414 4949 2.412325 GCGTGCATGGTTTACACTGTAC 60.412 50.000 8.27 0.00 32.07 2.90
4415 4950 3.064207 CGTGCATGGTTTACACTGTACT 58.936 45.455 0.00 0.00 32.07 2.73
4416 4951 3.120683 CGTGCATGGTTTACACTGTACTG 60.121 47.826 0.00 0.00 32.07 2.74
4417 4952 4.062293 GTGCATGGTTTACACTGTACTGA 58.938 43.478 6.77 0.00 0.00 3.41
4418 4953 4.152402 GTGCATGGTTTACACTGTACTGAG 59.848 45.833 6.77 0.99 0.00 3.35
4449 4994 7.443879 TCAATGTTTGCATCTTAACTGTAGACA 59.556 33.333 0.00 0.00 33.50 3.41
4470 5015 4.159135 ACAATCCAAGATGAAATGGTCAGC 59.841 41.667 0.00 0.00 43.33 4.26
4540 5085 2.151202 CTTGGGCGTCTAACATGTTGT 58.849 47.619 21.42 0.00 0.00 3.32
4555 5100 5.527951 ACATGTTGTGTTTGCGATAACATT 58.472 33.333 0.00 0.00 39.25 2.71
4557 5102 5.175090 TGTTGTGTTTGCGATAACATTGA 57.825 34.783 6.13 0.00 39.93 2.57
4577 5122 4.855340 TGAAGTTTATGAACCTCCATCCC 58.145 43.478 0.00 0.00 36.39 3.85
4587 5132 1.209747 ACCTCCATCCCGCTAACTTTC 59.790 52.381 0.00 0.00 0.00 2.62
4592 5137 3.081804 CCATCCCGCTAACTTTCTTTGT 58.918 45.455 0.00 0.00 0.00 2.83
4727 5272 2.499289 AGAGGATGCAATGAGAAGACGT 59.501 45.455 0.00 0.00 0.00 4.34
4816 5365 7.592736 TCCTTCTACTAGGGTCTAAATCATCA 58.407 38.462 0.00 0.00 35.90 3.07
4835 5384 1.466167 CAAAGACTTGGATCTGCACCG 59.534 52.381 0.00 0.00 0.00 4.94
4893 5442 8.045176 ACAACTCAATTATCAAGTTAAGCCTC 57.955 34.615 0.00 0.00 32.20 4.70
4919 5468 5.843673 TTTTGTGAAATGTGCTCTGGTAA 57.156 34.783 0.00 0.00 0.00 2.85
4923 5472 5.804639 TGTGAAATGTGCTCTGGTAACTAT 58.195 37.500 0.00 0.00 37.61 2.12
4936 5485 6.136857 TCTGGTAACTATATTCTGTCTGGCT 58.863 40.000 0.00 0.00 37.61 4.75
4958 5507 7.121168 TGGCTTTGAATGGACAACTAAATCTAG 59.879 37.037 0.00 0.00 0.00 2.43
4987 5544 6.888632 TCGTAGTTACTCTGGAGAATTAAGGT 59.111 38.462 4.49 0.00 0.00 3.50
5004 5561 7.618019 ATTAAGGTCATCTGGTGCTATTCTA 57.382 36.000 0.00 0.00 0.00 2.10
5015 5572 4.473196 TGGTGCTATTCTACCCTTGAATGA 59.527 41.667 0.00 0.00 36.10 2.57
5016 5573 4.816925 GGTGCTATTCTACCCTTGAATGAC 59.183 45.833 0.00 0.00 35.90 3.06
5034 5592 8.932945 TGAATGACTACTAAATCTAGCACTTG 57.067 34.615 0.00 0.00 0.00 3.16
5035 5593 8.531982 TGAATGACTACTAAATCTAGCACTTGT 58.468 33.333 0.00 0.00 0.00 3.16
5060 5618 9.962783 GTAGTTTCTTCAGTTCACTTCTAACTA 57.037 33.333 0.00 0.00 35.44 2.24
5119 5677 6.717289 TGGTACCAAGAAGTATGTTAGCAAT 58.283 36.000 13.60 0.00 0.00 3.56
5123 5681 5.882557 ACCAAGAAGTATGTTAGCAATCCAG 59.117 40.000 0.00 0.00 0.00 3.86
5155 5713 9.590451 TCAATCTTTTCATATCAAAATTCAGGC 57.410 29.630 0.00 0.00 0.00 4.85
5175 5733 5.276461 GGCTTACCTTCCCCATAAAAATG 57.724 43.478 0.00 0.00 0.00 2.32
5265 5824 8.206867 ACATAGCAGTAGATACAATGTGATGTT 58.793 33.333 0.00 0.00 34.75 2.71
5268 5827 8.425577 AGCAGTAGATACAATGTGATGTTAAC 57.574 34.615 0.00 0.00 34.75 2.01
5292 5864 6.146837 ACTTTCACAATTCTCTGAGACGATTG 59.853 38.462 21.87 21.87 31.84 2.67
5295 5867 3.681897 ACAATTCTCTGAGACGATTGTGC 59.318 43.478 25.67 0.00 35.50 4.57
5325 5897 6.543465 AGCAAATTTATGATAGTACAGCTGCA 59.457 34.615 15.27 0.00 0.00 4.41
5349 5921 3.427233 GCTTGCTGCATAAACTTCAGAGG 60.427 47.826 1.84 0.00 42.31 3.69
5384 5956 2.799978 TGTACAGACAAAGCATCACACG 59.200 45.455 0.00 0.00 30.68 4.49
5388 5960 0.517316 GACAAAGCATCACACGACCC 59.483 55.000 0.00 0.00 0.00 4.46
5389 5961 1.227999 ACAAAGCATCACACGACCCG 61.228 55.000 0.00 0.00 0.00 5.28
5406 5978 2.039879 ACCCGAAGTTTCATAGCTTGGT 59.960 45.455 0.00 0.00 0.00 3.67
5418 5990 0.689623 AGCTTGGTAGTGCTTGAGCT 59.310 50.000 4.44 0.00 42.66 4.09
5422 5994 3.120165 GCTTGGTAGTGCTTGAGCTAAAC 60.120 47.826 4.44 0.00 42.66 2.01
5424 5996 4.286297 TGGTAGTGCTTGAGCTAAACAT 57.714 40.909 4.44 0.00 42.66 2.71
5429 6001 5.165961 AGTGCTTGAGCTAAACATAGGAA 57.834 39.130 4.44 0.00 42.66 3.36
5469 6042 1.137513 GCCGCGTATGATTCCTACAC 58.862 55.000 4.92 0.00 0.00 2.90
5494 6067 0.605319 TTCTTCACAAAGCGGCGGAT 60.605 50.000 9.78 0.00 32.18 4.18
5548 6121 0.587768 CATGTGTCGCAAAGCAGACA 59.412 50.000 10.82 10.82 38.74 3.41
5566 6139 1.202582 ACATCCGTCGTCTCAAGGAAG 59.797 52.381 0.00 0.00 36.25 3.46
5568 6141 1.325355 TCCGTCGTCTCAAGGAAGTT 58.675 50.000 0.00 0.00 0.00 2.66
5671 6245 5.064071 GTGAGCAGAACAAAACTAGATAGCC 59.936 44.000 0.00 0.00 0.00 3.93
5716 6291 4.106288 CTTGCAAAGCGTCAAAAACATC 57.894 40.909 0.00 0.00 36.98 3.06
5717 6292 3.156511 TGCAAAGCGTCAAAAACATCA 57.843 38.095 0.00 0.00 0.00 3.07
5718 6293 3.515630 TGCAAAGCGTCAAAAACATCAA 58.484 36.364 0.00 0.00 0.00 2.57
5719 6294 3.928992 TGCAAAGCGTCAAAAACATCAAA 59.071 34.783 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.126863 AGGTAAAAAGATCACCACAGATCA 57.873 37.500 6.70 0.00 45.39 2.92
22 23 6.844097 ACCACAAACTGAAAGGTAAAAAGA 57.156 33.333 0.00 0.00 39.30 2.52
28 29 7.335924 GCATCTTATACCACAAACTGAAAGGTA 59.664 37.037 0.00 0.00 39.30 3.08
30 31 6.150976 TGCATCTTATACCACAAACTGAAAGG 59.849 38.462 0.00 0.00 39.30 3.11
41 42 8.443953 AGAGAGAAAAATGCATCTTATACCAC 57.556 34.615 0.00 0.00 0.00 4.16
42 43 8.489489 AGAGAGAGAAAAATGCATCTTATACCA 58.511 33.333 0.00 0.00 0.00 3.25
43 44 8.900983 AGAGAGAGAAAAATGCATCTTATACC 57.099 34.615 0.00 0.00 0.00 2.73
66 68 2.481441 ACTGGCATATGAGACCCAAGA 58.519 47.619 6.97 0.00 0.00 3.02
91 93 7.719633 TGATTAGCCTAAACAAGTCTTGTCTTT 59.280 33.333 18.42 12.37 44.59 2.52
114 116 4.873827 GGCATGCATTTCTTCAACAATGAT 59.126 37.500 21.36 0.00 34.96 2.45
246 249 2.222227 AAGAAAGCTTCCCACCATCC 57.778 50.000 0.00 0.00 0.00 3.51
288 292 6.499106 AATCCACCCTTTGTCAAAAAGAAT 57.501 33.333 0.00 0.00 0.00 2.40
289 293 5.948742 AATCCACCCTTTGTCAAAAAGAA 57.051 34.783 0.00 0.00 0.00 2.52
290 294 5.948742 AAATCCACCCTTTGTCAAAAAGA 57.051 34.783 0.00 0.00 0.00 2.52
291 295 8.558700 CAATAAAATCCACCCTTTGTCAAAAAG 58.441 33.333 0.00 0.00 0.00 2.27
292 296 8.267894 TCAATAAAATCCACCCTTTGTCAAAAA 58.732 29.630 0.00 0.00 0.00 1.94
293 297 7.713073 GTCAATAAAATCCACCCTTTGTCAAAA 59.287 33.333 0.00 0.00 0.00 2.44
294 298 7.070571 AGTCAATAAAATCCACCCTTTGTCAAA 59.929 33.333 0.00 0.00 0.00 2.69
295 299 6.553100 AGTCAATAAAATCCACCCTTTGTCAA 59.447 34.615 0.00 0.00 0.00 3.18
296 300 6.074648 AGTCAATAAAATCCACCCTTTGTCA 58.925 36.000 0.00 0.00 0.00 3.58
297 301 6.590234 AGTCAATAAAATCCACCCTTTGTC 57.410 37.500 0.00 0.00 0.00 3.18
298 302 6.994421 AAGTCAATAAAATCCACCCTTTGT 57.006 33.333 0.00 0.00 0.00 2.83
299 303 9.771534 TTTTAAGTCAATAAAATCCACCCTTTG 57.228 29.630 0.00 0.00 31.59 2.77
301 305 9.942850 CATTTTAAGTCAATAAAATCCACCCTT 57.057 29.630 2.86 0.00 41.30 3.95
302 306 9.320295 TCATTTTAAGTCAATAAAATCCACCCT 57.680 29.630 2.86 0.00 41.30 4.34
303 307 9.936759 TTCATTTTAAGTCAATAAAATCCACCC 57.063 29.630 2.86 0.00 41.30 4.61
314 318 9.199982 CAACTTGATGCTTCATTTTAAGTCAAT 57.800 29.630 2.75 0.00 29.56 2.57
315 319 8.412456 TCAACTTGATGCTTCATTTTAAGTCAA 58.588 29.630 2.75 0.00 29.56 3.18
316 320 7.939782 TCAACTTGATGCTTCATTTTAAGTCA 58.060 30.769 2.75 0.00 29.56 3.41
317 321 8.976986 ATCAACTTGATGCTTCATTTTAAGTC 57.023 30.769 3.32 0.00 35.43 3.01
318 322 9.846248 GTATCAACTTGATGCTTCATTTTAAGT 57.154 29.630 13.66 0.90 37.70 2.24
319 323 9.844790 TGTATCAACTTGATGCTTCATTTTAAG 57.155 29.630 17.57 0.28 39.71 1.85
322 326 8.981647 GTTTGTATCAACTTGATGCTTCATTTT 58.018 29.630 17.57 0.00 39.71 1.82
323 327 8.143193 TGTTTGTATCAACTTGATGCTTCATTT 58.857 29.630 17.57 0.00 39.71 2.32
324 328 7.596248 GTGTTTGTATCAACTTGATGCTTCATT 59.404 33.333 17.57 0.00 39.71 2.57
325 329 7.086376 GTGTTTGTATCAACTTGATGCTTCAT 58.914 34.615 17.57 0.00 39.71 2.57
326 330 6.437928 GTGTTTGTATCAACTTGATGCTTCA 58.562 36.000 17.57 11.96 39.71 3.02
327 331 5.565259 CGTGTTTGTATCAACTTGATGCTTC 59.435 40.000 17.57 10.17 39.71 3.86
328 332 5.238432 TCGTGTTTGTATCAACTTGATGCTT 59.762 36.000 17.57 0.00 39.71 3.91
329 333 4.754618 TCGTGTTTGTATCAACTTGATGCT 59.245 37.500 17.57 0.00 39.71 3.79
330 334 5.029650 TCGTGTTTGTATCAACTTGATGC 57.970 39.130 13.66 12.67 37.70 3.91
331 335 6.830736 TCATCGTGTTTGTATCAACTTGATG 58.169 36.000 13.66 10.07 37.70 3.07
332 336 6.873605 TCTCATCGTGTTTGTATCAACTTGAT 59.126 34.615 9.26 9.26 40.72 2.57
333 337 6.220201 TCTCATCGTGTTTGTATCAACTTGA 58.780 36.000 0.00 0.00 0.00 3.02
334 338 6.466308 TCTCATCGTGTTTGTATCAACTTG 57.534 37.500 0.00 0.00 0.00 3.16
335 339 6.481976 TGTTCTCATCGTGTTTGTATCAACTT 59.518 34.615 0.00 0.00 0.00 2.66
336 340 5.989168 TGTTCTCATCGTGTTTGTATCAACT 59.011 36.000 0.00 0.00 0.00 3.16
337 341 6.071463 GTGTTCTCATCGTGTTTGTATCAAC 58.929 40.000 0.00 0.00 0.00 3.18
338 342 5.755861 TGTGTTCTCATCGTGTTTGTATCAA 59.244 36.000 0.00 0.00 0.00 2.57
339 343 5.176774 GTGTGTTCTCATCGTGTTTGTATCA 59.823 40.000 0.00 0.00 0.00 2.15
340 344 5.389516 GGTGTGTTCTCATCGTGTTTGTATC 60.390 44.000 0.00 0.00 0.00 2.24
341 345 4.451096 GGTGTGTTCTCATCGTGTTTGTAT 59.549 41.667 0.00 0.00 0.00 2.29
342 346 3.805422 GGTGTGTTCTCATCGTGTTTGTA 59.195 43.478 0.00 0.00 0.00 2.41
343 347 2.612212 GGTGTGTTCTCATCGTGTTTGT 59.388 45.455 0.00 0.00 0.00 2.83
344 348 2.032030 GGGTGTGTTCTCATCGTGTTTG 60.032 50.000 0.00 0.00 0.00 2.93
345 349 2.218603 GGGTGTGTTCTCATCGTGTTT 58.781 47.619 0.00 0.00 0.00 2.83
346 350 1.872237 CGGGTGTGTTCTCATCGTGTT 60.872 52.381 0.00 0.00 0.00 3.32
347 351 0.319555 CGGGTGTGTTCTCATCGTGT 60.320 55.000 0.00 0.00 0.00 4.49
348 352 1.014044 CCGGGTGTGTTCTCATCGTG 61.014 60.000 0.00 0.00 0.00 4.35
349 353 1.292223 CCGGGTGTGTTCTCATCGT 59.708 57.895 0.00 0.00 0.00 3.73
350 354 2.100631 GCCGGGTGTGTTCTCATCG 61.101 63.158 2.18 0.00 0.00 3.84
351 355 1.745489 GGCCGGGTGTGTTCTCATC 60.745 63.158 2.18 0.00 0.00 2.92
352 356 2.185310 GAGGCCGGGTGTGTTCTCAT 62.185 60.000 2.18 0.00 0.00 2.90
353 357 2.847234 AGGCCGGGTGTGTTCTCA 60.847 61.111 2.18 0.00 0.00 3.27
354 358 2.047179 GAGGCCGGGTGTGTTCTC 60.047 66.667 2.18 0.00 0.00 2.87
355 359 2.526873 AGAGGCCGGGTGTGTTCT 60.527 61.111 2.18 0.00 0.00 3.01
356 360 2.358737 CAGAGGCCGGGTGTGTTC 60.359 66.667 2.18 0.00 0.00 3.18
357 361 4.643387 GCAGAGGCCGGGTGTGTT 62.643 66.667 2.18 0.00 0.00 3.32
359 363 2.535485 TTATGCAGAGGCCGGGTGTG 62.535 60.000 2.18 0.00 40.13 3.82
360 364 2.297895 TTATGCAGAGGCCGGGTGT 61.298 57.895 2.18 0.00 40.13 4.16
361 365 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
362 366 0.689745 TAGTTATGCAGAGGCCGGGT 60.690 55.000 2.18 0.00 40.13 5.28
363 367 0.468226 TTAGTTATGCAGAGGCCGGG 59.532 55.000 2.18 0.00 40.13 5.73
364 368 1.412710 TCTTAGTTATGCAGAGGCCGG 59.587 52.381 0.00 0.00 40.13 6.13
365 369 2.890808 TCTTAGTTATGCAGAGGCCG 57.109 50.000 0.00 0.00 40.13 6.13
374 378 5.106791 GCTGCCTATGTGCATCTTAGTTATG 60.107 44.000 0.00 0.00 41.16 1.90
375 379 4.999950 GCTGCCTATGTGCATCTTAGTTAT 59.000 41.667 0.00 0.00 41.16 1.89
376 380 4.141733 TGCTGCCTATGTGCATCTTAGTTA 60.142 41.667 0.00 0.00 41.16 2.24
377 381 3.209410 GCTGCCTATGTGCATCTTAGTT 58.791 45.455 0.00 0.00 41.16 2.24
378 382 2.171237 TGCTGCCTATGTGCATCTTAGT 59.829 45.455 0.00 0.00 41.16 2.24
379 383 2.547211 GTGCTGCCTATGTGCATCTTAG 59.453 50.000 0.00 0.00 41.16 2.18
380 384 2.564771 GTGCTGCCTATGTGCATCTTA 58.435 47.619 0.00 0.00 41.16 2.10
381 385 1.386533 GTGCTGCCTATGTGCATCTT 58.613 50.000 0.00 0.00 41.16 2.40
382 386 0.465097 GGTGCTGCCTATGTGCATCT 60.465 55.000 0.00 0.00 41.16 2.90
383 387 0.749091 TGGTGCTGCCTATGTGCATC 60.749 55.000 0.00 0.00 41.16 3.91
384 388 0.323633 TTGGTGCTGCCTATGTGCAT 60.324 50.000 0.00 0.00 41.16 3.96
385 389 1.074599 TTGGTGCTGCCTATGTGCA 59.925 52.632 0.00 0.00 39.37 4.57
386 390 1.243342 TGTTGGTGCTGCCTATGTGC 61.243 55.000 0.00 0.00 38.35 4.57
387 391 0.523072 GTGTTGGTGCTGCCTATGTG 59.477 55.000 0.00 0.00 38.35 3.21
388 392 0.110295 TGTGTTGGTGCTGCCTATGT 59.890 50.000 0.00 0.00 38.35 2.29
389 393 0.523072 GTGTGTTGGTGCTGCCTATG 59.477 55.000 0.00 0.00 38.35 2.23
390 394 0.110295 TGTGTGTTGGTGCTGCCTAT 59.890 50.000 0.00 0.00 38.35 2.57
391 395 0.817634 GTGTGTGTTGGTGCTGCCTA 60.818 55.000 0.00 0.00 38.35 3.93
392 396 2.120909 GTGTGTGTTGGTGCTGCCT 61.121 57.895 0.00 0.00 38.35 4.75
393 397 1.943116 TTGTGTGTGTTGGTGCTGCC 61.943 55.000 0.00 0.00 37.90 4.85
394 398 0.102844 ATTGTGTGTGTTGGTGCTGC 59.897 50.000 0.00 0.00 0.00 5.25
395 399 3.371168 GTTATTGTGTGTGTTGGTGCTG 58.629 45.455 0.00 0.00 0.00 4.41
396 400 2.360801 GGTTATTGTGTGTGTTGGTGCT 59.639 45.455 0.00 0.00 0.00 4.40
397 401 2.544903 GGGTTATTGTGTGTGTTGGTGC 60.545 50.000 0.00 0.00 0.00 5.01
398 402 2.287308 CGGGTTATTGTGTGTGTTGGTG 60.287 50.000 0.00 0.00 0.00 4.17
399 403 1.950909 CGGGTTATTGTGTGTGTTGGT 59.049 47.619 0.00 0.00 0.00 3.67
400 404 1.335506 GCGGGTTATTGTGTGTGTTGG 60.336 52.381 0.00 0.00 0.00 3.77
401 405 1.606668 AGCGGGTTATTGTGTGTGTTG 59.393 47.619 0.00 0.00 0.00 3.33
402 406 1.606668 CAGCGGGTTATTGTGTGTGTT 59.393 47.619 0.00 0.00 0.00 3.32
403 407 1.234821 CAGCGGGTTATTGTGTGTGT 58.765 50.000 0.00 0.00 0.00 3.72
404 408 0.521291 CCAGCGGGTTATTGTGTGTG 59.479 55.000 0.00 0.00 0.00 3.82
405 409 1.241315 GCCAGCGGGTTATTGTGTGT 61.241 55.000 4.36 0.00 36.17 3.72
406 410 1.240641 TGCCAGCGGGTTATTGTGTG 61.241 55.000 4.36 0.00 36.17 3.82
407 411 0.538516 TTGCCAGCGGGTTATTGTGT 60.539 50.000 4.36 0.00 36.17 3.72
408 412 0.600557 TTTGCCAGCGGGTTATTGTG 59.399 50.000 4.36 0.00 36.17 3.33
409 413 1.555967 ATTTGCCAGCGGGTTATTGT 58.444 45.000 4.36 0.00 36.17 2.71
410 414 2.543653 GCTATTTGCCAGCGGGTTATTG 60.544 50.000 4.36 0.00 36.17 1.90
411 415 1.681264 GCTATTTGCCAGCGGGTTATT 59.319 47.619 4.36 0.00 36.17 1.40
412 416 1.318576 GCTATTTGCCAGCGGGTTAT 58.681 50.000 4.36 0.00 36.17 1.89
413 417 0.034960 TGCTATTTGCCAGCGGGTTA 60.035 50.000 4.36 0.00 42.13 2.85
414 418 0.897863 TTGCTATTTGCCAGCGGGTT 60.898 50.000 4.36 0.00 42.13 4.11
415 419 0.897863 TTTGCTATTTGCCAGCGGGT 60.898 50.000 4.36 0.00 42.13 5.28
416 420 0.179129 CTTTGCTATTTGCCAGCGGG 60.179 55.000 0.00 0.00 42.13 6.13
417 421 0.527565 ACTTTGCTATTTGCCAGCGG 59.472 50.000 0.00 0.00 42.13 5.52
418 422 1.199789 TGACTTTGCTATTTGCCAGCG 59.800 47.619 0.00 0.00 42.13 5.18
419 423 3.515330 ATGACTTTGCTATTTGCCAGC 57.485 42.857 0.00 0.00 42.00 4.85
420 424 8.072567 GTCTTATATGACTTTGCTATTTGCCAG 58.927 37.037 10.70 0.00 36.08 4.85
421 425 7.013274 GGTCTTATATGACTTTGCTATTTGCCA 59.987 37.037 15.98 0.00 37.72 4.92
422 426 7.013274 TGGTCTTATATGACTTTGCTATTTGCC 59.987 37.037 15.98 0.00 37.72 4.52
423 427 7.930217 TGGTCTTATATGACTTTGCTATTTGC 58.070 34.615 15.98 0.00 38.36 3.68
432 436 9.289782 GGCATAGATTTGGTCTTATATGACTTT 57.710 33.333 15.98 2.31 38.42 2.66
433 437 8.664079 AGGCATAGATTTGGTCTTATATGACTT 58.336 33.333 15.98 2.59 35.99 3.01
434 438 8.212259 AGGCATAGATTTGGTCTTATATGACT 57.788 34.615 15.98 0.00 35.06 3.41
435 439 9.944376 TTAGGCATAGATTTGGTCTTATATGAC 57.056 33.333 9.70 9.70 38.42 3.06
437 441 8.887717 GCTTAGGCATAGATTTGGTCTTATATG 58.112 37.037 0.00 0.00 37.09 1.78
438 442 7.766278 CGCTTAGGCATAGATTTGGTCTTATAT 59.234 37.037 0.00 0.00 37.01 0.86
439 443 7.039293 TCGCTTAGGCATAGATTTGGTCTTATA 60.039 37.037 0.00 0.00 37.01 0.98
440 444 5.934625 CGCTTAGGCATAGATTTGGTCTTAT 59.065 40.000 0.00 0.00 37.01 1.73
441 445 5.069914 TCGCTTAGGCATAGATTTGGTCTTA 59.930 40.000 0.00 0.00 37.01 2.10
442 446 4.130118 CGCTTAGGCATAGATTTGGTCTT 58.870 43.478 0.00 0.00 37.01 3.01
443 447 3.388024 TCGCTTAGGCATAGATTTGGTCT 59.612 43.478 0.00 0.00 38.50 3.85
444 448 3.728845 TCGCTTAGGCATAGATTTGGTC 58.271 45.455 0.00 0.00 38.60 4.02
445 449 3.838244 TCGCTTAGGCATAGATTTGGT 57.162 42.857 0.00 0.00 38.60 3.67
446 450 3.876914 TGTTCGCTTAGGCATAGATTTGG 59.123 43.478 0.00 0.00 38.60 3.28
447 451 5.484173 TTGTTCGCTTAGGCATAGATTTG 57.516 39.130 0.00 0.00 38.60 2.32
448 452 6.238759 GGATTTGTTCGCTTAGGCATAGATTT 60.239 38.462 0.00 0.00 38.60 2.17
449 453 5.239525 GGATTTGTTCGCTTAGGCATAGATT 59.760 40.000 0.00 0.00 38.60 2.40
450 454 4.757149 GGATTTGTTCGCTTAGGCATAGAT 59.243 41.667 0.00 0.00 38.60 1.98
451 455 4.127171 GGATTTGTTCGCTTAGGCATAGA 58.873 43.478 0.00 0.00 38.60 1.98
452 456 3.059597 CGGATTTGTTCGCTTAGGCATAG 60.060 47.826 0.00 0.00 38.60 2.23
453 457 2.869801 CGGATTTGTTCGCTTAGGCATA 59.130 45.455 0.00 0.00 38.60 3.14
454 458 1.670811 CGGATTTGTTCGCTTAGGCAT 59.329 47.619 0.00 0.00 38.60 4.40
455 459 1.083489 CGGATTTGTTCGCTTAGGCA 58.917 50.000 0.00 0.00 38.60 4.75
456 460 3.897819 CGGATTTGTTCGCTTAGGC 57.102 52.632 0.00 0.00 0.00 3.93
463 467 0.044161 GTCGATCGCGGATTTGTTCG 60.044 55.000 11.09 4.44 38.28 3.95
464 468 0.996462 TGTCGATCGCGGATTTGTTC 59.004 50.000 11.09 0.00 38.28 3.18
465 469 1.434555 TTGTCGATCGCGGATTTGTT 58.565 45.000 11.09 0.00 38.28 2.83
466 470 1.127951 GTTTGTCGATCGCGGATTTGT 59.872 47.619 11.09 0.00 38.28 2.83
467 471 1.393539 AGTTTGTCGATCGCGGATTTG 59.606 47.619 11.09 0.00 38.28 2.32
468 472 1.722011 AGTTTGTCGATCGCGGATTT 58.278 45.000 11.09 0.00 38.28 2.17
469 473 2.190981 GTAGTTTGTCGATCGCGGATT 58.809 47.619 11.09 0.00 38.28 3.01
470 474 1.133598 TGTAGTTTGTCGATCGCGGAT 59.866 47.619 11.09 0.00 38.28 4.18
471 475 0.522626 TGTAGTTTGTCGATCGCGGA 59.477 50.000 11.09 0.00 38.28 5.54
472 476 1.058695 GTTGTAGTTTGTCGATCGCGG 59.941 52.381 11.09 0.00 38.28 6.46
473 477 1.717113 TGTTGTAGTTTGTCGATCGCG 59.283 47.619 11.09 0.00 39.35 5.87
474 478 3.781341 TTGTTGTAGTTTGTCGATCGC 57.219 42.857 11.09 6.41 0.00 4.58
475 479 4.637968 CCATTGTTGTAGTTTGTCGATCG 58.362 43.478 9.36 9.36 0.00 3.69
476 480 4.154195 AGCCATTGTTGTAGTTTGTCGATC 59.846 41.667 0.00 0.00 0.00 3.69
477 481 4.072131 AGCCATTGTTGTAGTTTGTCGAT 58.928 39.130 0.00 0.00 0.00 3.59
478 482 3.472652 AGCCATTGTTGTAGTTTGTCGA 58.527 40.909 0.00 0.00 0.00 4.20
479 483 3.896648 AGCCATTGTTGTAGTTTGTCG 57.103 42.857 0.00 0.00 0.00 4.35
480 484 7.282224 TGGATATAGCCATTGTTGTAGTTTGTC 59.718 37.037 5.37 0.00 31.66 3.18
481 485 7.116075 TGGATATAGCCATTGTTGTAGTTTGT 58.884 34.615 5.37 0.00 31.66 2.83
482 486 7.566760 TGGATATAGCCATTGTTGTAGTTTG 57.433 36.000 5.37 0.00 31.66 2.93
483 487 9.284968 GTATGGATATAGCCATTGTTGTAGTTT 57.715 33.333 26.63 2.29 46.29 2.66
484 488 7.883311 GGTATGGATATAGCCATTGTTGTAGTT 59.117 37.037 26.63 2.82 46.29 2.24
485 489 7.017155 TGGTATGGATATAGCCATTGTTGTAGT 59.983 37.037 26.63 3.57 46.29 2.73
486 490 7.394016 TGGTATGGATATAGCCATTGTTGTAG 58.606 38.462 26.63 0.00 46.29 2.74
487 491 7.323052 TGGTATGGATATAGCCATTGTTGTA 57.677 36.000 26.63 5.83 46.29 2.41
488 492 6.199557 TGGTATGGATATAGCCATTGTTGT 57.800 37.500 26.63 5.81 46.29 3.32
489 493 6.071952 GGTTGGTATGGATATAGCCATTGTTG 60.072 42.308 26.63 0.00 46.29 3.33
490 494 6.010219 GGTTGGTATGGATATAGCCATTGTT 58.990 40.000 26.63 6.96 46.29 2.83
491 495 5.074377 TGGTTGGTATGGATATAGCCATTGT 59.926 40.000 26.63 7.34 46.29 2.71
492 496 5.569355 TGGTTGGTATGGATATAGCCATTG 58.431 41.667 26.63 0.00 46.29 2.82
493 497 5.858876 TGGTTGGTATGGATATAGCCATT 57.141 39.130 26.63 11.70 46.29 3.16
495 499 5.100811 AGATGGTTGGTATGGATATAGCCA 58.899 41.667 13.05 13.05 43.23 4.75
496 500 5.189736 TGAGATGGTTGGTATGGATATAGCC 59.810 44.000 0.00 0.00 36.64 3.93
497 501 6.299805 TGAGATGGTTGGTATGGATATAGC 57.700 41.667 0.00 0.00 37.69 2.97
498 502 7.984050 GTCATGAGATGGTTGGTATGGATATAG 59.016 40.741 0.00 0.00 0.00 1.31
499 503 7.457535 TGTCATGAGATGGTTGGTATGGATATA 59.542 37.037 0.00 0.00 0.00 0.86
500 504 6.273026 TGTCATGAGATGGTTGGTATGGATAT 59.727 38.462 0.00 0.00 0.00 1.63
501 505 5.606329 TGTCATGAGATGGTTGGTATGGATA 59.394 40.000 0.00 0.00 0.00 2.59
502 506 4.413189 TGTCATGAGATGGTTGGTATGGAT 59.587 41.667 0.00 0.00 0.00 3.41
503 507 3.779738 TGTCATGAGATGGTTGGTATGGA 59.220 43.478 0.00 0.00 0.00 3.41
504 508 3.879295 GTGTCATGAGATGGTTGGTATGG 59.121 47.826 0.00 0.00 0.00 2.74
505 509 3.879295 GGTGTCATGAGATGGTTGGTATG 59.121 47.826 0.00 0.00 0.00 2.39
506 510 3.523157 TGGTGTCATGAGATGGTTGGTAT 59.477 43.478 0.00 0.00 0.00 2.73
507 511 2.909662 TGGTGTCATGAGATGGTTGGTA 59.090 45.455 0.00 0.00 0.00 3.25
508 512 1.704628 TGGTGTCATGAGATGGTTGGT 59.295 47.619 0.00 0.00 0.00 3.67
509 513 2.495155 TGGTGTCATGAGATGGTTGG 57.505 50.000 0.00 0.00 0.00 3.77
510 514 4.577693 CCTTATGGTGTCATGAGATGGTTG 59.422 45.833 0.00 0.00 38.75 3.77
511 515 4.474651 TCCTTATGGTGTCATGAGATGGTT 59.525 41.667 0.00 0.00 38.75 3.67
512 516 4.040047 TCCTTATGGTGTCATGAGATGGT 58.960 43.478 0.00 0.00 38.75 3.55
513 517 4.141642 TGTCCTTATGGTGTCATGAGATGG 60.142 45.833 0.00 0.00 38.75 3.51
514 518 5.027293 TGTCCTTATGGTGTCATGAGATG 57.973 43.478 0.00 0.00 38.75 2.90
515 519 5.431765 GTTGTCCTTATGGTGTCATGAGAT 58.568 41.667 0.00 0.00 38.75 2.75
516 520 4.620567 CGTTGTCCTTATGGTGTCATGAGA 60.621 45.833 0.00 0.00 38.75 3.27
517 521 3.618594 CGTTGTCCTTATGGTGTCATGAG 59.381 47.826 0.00 0.00 36.92 2.90
518 522 3.595173 CGTTGTCCTTATGGTGTCATGA 58.405 45.455 0.00 0.00 34.96 3.07
519 523 2.677836 CCGTTGTCCTTATGGTGTCATG 59.322 50.000 0.00 0.00 34.96 3.07
520 524 2.355716 CCCGTTGTCCTTATGGTGTCAT 60.356 50.000 0.00 0.00 37.40 3.06
521 525 1.002659 CCCGTTGTCCTTATGGTGTCA 59.997 52.381 0.00 0.00 34.23 3.58
522 526 1.677820 CCCCGTTGTCCTTATGGTGTC 60.678 57.143 0.00 0.00 34.23 3.67
523 527 0.326927 CCCCGTTGTCCTTATGGTGT 59.673 55.000 0.00 0.00 34.23 4.16
524 528 0.326927 ACCCCGTTGTCCTTATGGTG 59.673 55.000 0.00 0.00 34.23 4.17
525 529 1.003928 GAACCCCGTTGTCCTTATGGT 59.996 52.381 0.00 0.00 34.23 3.55
526 530 1.280998 AGAACCCCGTTGTCCTTATGG 59.719 52.381 0.00 0.00 0.00 2.74
527 531 2.781681 AGAACCCCGTTGTCCTTATG 57.218 50.000 0.00 0.00 0.00 1.90
528 532 2.640826 TGAAGAACCCCGTTGTCCTTAT 59.359 45.455 0.00 0.00 0.00 1.73
529 533 2.048601 TGAAGAACCCCGTTGTCCTTA 58.951 47.619 0.00 0.00 0.00 2.69
530 534 0.841289 TGAAGAACCCCGTTGTCCTT 59.159 50.000 0.00 0.00 0.00 3.36
531 535 0.841289 TTGAAGAACCCCGTTGTCCT 59.159 50.000 0.00 0.00 0.00 3.85
532 536 0.949397 GTTGAAGAACCCCGTTGTCC 59.051 55.000 0.00 0.00 0.00 4.02
533 537 1.670791 TGTTGAAGAACCCCGTTGTC 58.329 50.000 0.00 0.00 0.00 3.18
534 538 1.746787 GTTGTTGAAGAACCCCGTTGT 59.253 47.619 0.00 0.00 0.00 3.32
535 539 1.746220 TGTTGTTGAAGAACCCCGTTG 59.254 47.619 2.62 0.00 0.00 4.10
536 540 2.131776 TGTTGTTGAAGAACCCCGTT 57.868 45.000 2.62 0.00 0.00 4.44
537 541 1.746787 GTTGTTGTTGAAGAACCCCGT 59.253 47.619 2.62 0.00 30.75 5.28
538 542 1.268335 CGTTGTTGTTGAAGAACCCCG 60.268 52.381 2.62 1.56 32.86 5.73
539 543 1.535226 GCGTTGTTGTTGAAGAACCCC 60.535 52.381 2.62 0.00 32.86 4.95
540 544 1.535226 GGCGTTGTTGTTGAAGAACCC 60.535 52.381 2.62 0.00 32.86 4.11
541 545 1.404035 AGGCGTTGTTGTTGAAGAACC 59.596 47.619 2.62 0.00 32.86 3.62
542 546 2.844122 AGGCGTTGTTGTTGAAGAAC 57.156 45.000 0.00 0.00 33.08 3.01
543 547 2.750166 TGAAGGCGTTGTTGTTGAAGAA 59.250 40.909 0.00 0.00 0.00 2.52
544 548 2.360844 TGAAGGCGTTGTTGTTGAAGA 58.639 42.857 0.00 0.00 0.00 2.87
545 549 2.842208 TGAAGGCGTTGTTGTTGAAG 57.158 45.000 0.00 0.00 0.00 3.02
546 550 2.685388 TCATGAAGGCGTTGTTGTTGAA 59.315 40.909 0.00 0.00 0.00 2.69
547 551 2.293170 TCATGAAGGCGTTGTTGTTGA 58.707 42.857 0.00 0.00 0.00 3.18
548 552 2.772568 TCATGAAGGCGTTGTTGTTG 57.227 45.000 0.00 0.00 0.00 3.33
549 553 3.354089 CTTCATGAAGGCGTTGTTGTT 57.646 42.857 25.14 0.00 34.87 2.83
560 564 0.942962 GCATCGCTCCCTTCATGAAG 59.057 55.000 25.75 25.75 38.14 3.02
561 565 0.543277 AGCATCGCTCCCTTCATGAA 59.457 50.000 8.12 8.12 30.62 2.57
562 566 2.215191 AGCATCGCTCCCTTCATGA 58.785 52.632 0.00 0.00 30.62 3.07
563 567 4.872357 AGCATCGCTCCCTTCATG 57.128 55.556 0.00 0.00 30.62 3.07
575 579 6.893958 TTGTTTTAGATTCTCTCGAGCATC 57.106 37.500 7.81 9.07 32.39 3.91
576 580 6.650807 TGTTTGTTTTAGATTCTCTCGAGCAT 59.349 34.615 7.81 0.00 0.00 3.79
577 581 5.989168 TGTTTGTTTTAGATTCTCTCGAGCA 59.011 36.000 7.81 0.00 0.00 4.26
578 582 6.467723 TGTTTGTTTTAGATTCTCTCGAGC 57.532 37.500 7.81 0.00 0.00 5.03
635 639 8.909708 TTTGTGAGACAAGAAACAATAAACAG 57.090 30.769 0.00 0.00 39.53 3.16
640 644 6.316640 TCGGTTTTGTGAGACAAGAAACAATA 59.683 34.615 0.00 0.00 39.53 1.90
642 646 4.456222 TCGGTTTTGTGAGACAAGAAACAA 59.544 37.500 0.00 0.00 39.53 2.83
643 647 4.004314 TCGGTTTTGTGAGACAAGAAACA 58.996 39.130 0.00 0.00 39.53 2.83
644 648 4.609691 TCGGTTTTGTGAGACAAGAAAC 57.390 40.909 0.00 0.00 39.53 2.78
645 649 5.630661 TTTCGGTTTTGTGAGACAAGAAA 57.369 34.783 0.00 0.00 39.53 2.52
647 651 4.638421 ACATTTCGGTTTTGTGAGACAAGA 59.362 37.500 0.00 0.00 39.53 3.02
651 674 6.056428 ACTAACATTTCGGTTTTGTGAGAC 57.944 37.500 0.00 0.00 32.29 3.36
682 705 1.557832 CATTTCGGTTACCCCTCCAGA 59.442 52.381 0.00 0.00 0.00 3.86
683 706 1.280998 ACATTTCGGTTACCCCTCCAG 59.719 52.381 0.00 0.00 0.00 3.86
684 707 1.364269 ACATTTCGGTTACCCCTCCA 58.636 50.000 0.00 0.00 0.00 3.86
685 708 2.502142 AACATTTCGGTTACCCCTCC 57.498 50.000 0.00 0.00 0.00 4.30
686 709 4.186926 GACTAACATTTCGGTTACCCCTC 58.813 47.826 0.00 0.00 32.29 4.30
727 814 0.406361 ACCCGAGGCCCATTTTGTTA 59.594 50.000 0.00 0.00 0.00 2.41
731 818 2.359011 GGACCCGAGGCCCATTTT 59.641 61.111 0.00 0.00 0.00 1.82
802 961 1.256812 CTCCAGTTCCCGCCAATTTT 58.743 50.000 0.00 0.00 0.00 1.82
856 1015 5.195940 GGTTATAAGTGGTTAGGGGTTTCC 58.804 45.833 0.00 0.00 0.00 3.13
864 1023 3.070590 CGGGAGGGGTTATAAGTGGTTAG 59.929 52.174 0.00 0.00 0.00 2.34
865 1024 3.040477 CGGGAGGGGTTATAAGTGGTTA 58.960 50.000 0.00 0.00 0.00 2.85
866 1025 1.841919 CGGGAGGGGTTATAAGTGGTT 59.158 52.381 0.00 0.00 0.00 3.67
869 1028 0.108019 GGCGGGAGGGGTTATAAGTG 59.892 60.000 0.00 0.00 0.00 3.16
927 1092 0.686112 GAGACCAGGAGACCAGGAGG 60.686 65.000 6.24 0.00 42.21 4.30
928 1093 0.686112 GGAGACCAGGAGACCAGGAG 60.686 65.000 6.24 0.00 0.00 3.69
929 1094 1.388531 GGAGACCAGGAGACCAGGA 59.611 63.158 6.24 0.00 0.00 3.86
930 1095 4.042251 GGAGACCAGGAGACCAGG 57.958 66.667 0.00 0.00 0.00 4.45
1140 1305 0.179124 CGAAGAGGAAGGAGCGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
1209 1374 2.291741 GCATGCGAGAGGGAAATAAAGG 59.708 50.000 0.00 0.00 0.00 3.11
1222 1387 3.264897 GGCGTACTGGCATGCGAG 61.265 66.667 26.03 26.03 44.08 5.03
1239 1404 2.538449 GTGGATAACCTAATCACGTGCG 59.462 50.000 11.67 0.00 37.04 5.34
1245 1410 2.035449 CCGCGAGTGGATAACCTAATCA 59.965 50.000 8.23 0.00 37.04 2.57
1285 1450 1.594331 AGACTGACGCAAAGGAAACC 58.406 50.000 0.00 0.00 0.00 3.27
1293 1458 7.272037 TCTATAACATGATAGACTGACGCAA 57.728 36.000 0.00 0.00 34.22 4.85
1302 1467 9.201989 AGGCCGATTAATCTATAACATGATAGA 57.798 33.333 13.45 2.93 41.53 1.98
1431 1604 6.015095 TCTCAAGTCTCAAGCATTCTTCTACA 60.015 38.462 0.00 0.00 0.00 2.74
1443 1618 3.424565 CGCATTTGCTCTCAAGTCTCAAG 60.425 47.826 0.51 0.00 39.32 3.02
1444 1619 2.481568 CGCATTTGCTCTCAAGTCTCAA 59.518 45.455 0.51 0.00 39.32 3.02
1445 1620 2.071540 CGCATTTGCTCTCAAGTCTCA 58.928 47.619 0.51 0.00 39.32 3.27
1446 1621 2.072298 ACGCATTTGCTCTCAAGTCTC 58.928 47.619 0.51 0.00 39.32 3.36
1447 1622 2.175878 ACGCATTTGCTCTCAAGTCT 57.824 45.000 0.51 0.00 39.32 3.24
1448 1623 2.977405 AACGCATTTGCTCTCAAGTC 57.023 45.000 0.51 0.00 39.32 3.01
1449 1624 3.363970 CGTAAACGCATTTGCTCTCAAGT 60.364 43.478 0.51 0.00 39.32 3.16
1514 1695 6.319152 TCCTAACAGTGCAGTAGAATCTACTC 59.681 42.308 19.20 14.21 0.00 2.59
1515 1696 6.188407 TCCTAACAGTGCAGTAGAATCTACT 58.812 40.000 16.62 16.62 0.00 2.57
1516 1697 6.319152 TCTCCTAACAGTGCAGTAGAATCTAC 59.681 42.308 12.26 12.26 0.00 2.59
1522 1703 5.480422 TGAAATCTCCTAACAGTGCAGTAGA 59.520 40.000 0.00 0.00 0.00 2.59
1563 1745 6.706270 ACACAGTGTAAGAAATCTCGTTTCAT 59.294 34.615 3.69 0.00 46.97 2.57
1569 1751 6.287107 ACAAACACAGTGTAAGAAATCTCG 57.713 37.500 6.63 0.00 0.00 4.04
1590 1774 2.176798 ACAATGGAACCTGGAAAGGACA 59.823 45.455 0.00 0.00 0.00 4.02
1721 1905 4.740034 GCATATCAGCAGAGTCATGTCAGT 60.740 45.833 0.00 0.00 0.00 3.41
1722 1906 3.741856 GCATATCAGCAGAGTCATGTCAG 59.258 47.826 0.00 0.00 0.00 3.51
1723 1907 3.493873 GGCATATCAGCAGAGTCATGTCA 60.494 47.826 0.00 0.00 35.83 3.58
1724 1908 3.065655 GGCATATCAGCAGAGTCATGTC 58.934 50.000 0.00 0.00 35.83 3.06
1764 1948 3.610911 ACAGGTAAGCATAAGAAGGCAC 58.389 45.455 0.00 0.00 33.96 5.01
1788 1973 4.099419 ACCCATCCTTCAAAAACAGTGTTC 59.901 41.667 9.40 0.00 0.00 3.18
1799 1985 2.196595 CCAGGTAGACCCATCCTTCAA 58.803 52.381 0.00 0.00 36.42 2.69
1923 2109 4.460382 TGGGAAACAAATGCTCTGAGATTC 59.540 41.667 9.28 1.12 0.00 2.52
1924 2110 4.410099 TGGGAAACAAATGCTCTGAGATT 58.590 39.130 9.28 2.97 0.00 2.40
1928 2114 5.305128 AGAAAATGGGAAACAAATGCTCTGA 59.695 36.000 0.00 0.00 0.00 3.27
1936 2128 6.729690 ACTGATCAGAAAATGGGAAACAAA 57.270 33.333 29.27 0.00 0.00 2.83
1967 2159 8.581578 CACTAACCAACCCTTTGTACAAATAAT 58.418 33.333 20.83 6.97 0.00 1.28
1969 2161 6.490721 CCACTAACCAACCCTTTGTACAAATA 59.509 38.462 20.83 7.52 0.00 1.40
1970 2162 5.303333 CCACTAACCAACCCTTTGTACAAAT 59.697 40.000 20.83 4.31 0.00 2.32
1995 2187 6.096001 AGCCAATCAAACTATTCAGGTGAATC 59.904 38.462 8.49 0.00 43.17 2.52
2071 2264 1.675310 CCATTTGGCGCAGGTCAGA 60.675 57.895 10.83 0.00 0.00 3.27
2093 2286 1.024271 TTGTTCAGGTGACAAGCAGC 58.976 50.000 0.00 0.00 45.24 5.25
2188 2381 5.059161 TGGACACTGAAATTGTCAAGAGAG 58.941 41.667 4.96 0.00 44.47 3.20
2195 2388 4.819630 TGGTTACTGGACACTGAAATTGTC 59.180 41.667 0.00 0.00 42.35 3.18
2350 2594 7.739825 AGGCTATCAAATGCTAGATGAACTTA 58.260 34.615 0.00 0.00 0.00 2.24
2527 2771 3.631144 TCTGAGAAAAAGCAAATGCACG 58.369 40.909 8.28 0.00 45.16 5.34
2605 2849 2.133281 TTCCCATTCATCTGTGGCAG 57.867 50.000 0.00 0.00 34.08 4.85
2720 2964 1.677576 CTTGCAAGAACAGGAAGCACA 59.322 47.619 22.31 0.00 34.56 4.57
2835 3079 2.301870 AGCAAGTTCTGGGTCGAATGTA 59.698 45.455 0.00 0.00 0.00 2.29
2841 3085 1.294659 GAGCAGCAAGTTCTGGGTCG 61.295 60.000 0.00 0.00 34.74 4.79
2898 3142 3.748048 GCAACTGAGCTGTTACATCTTCA 59.252 43.478 0.00 0.00 0.00 3.02
3002 3246 7.018650 AGGCTAGAGGTTAGGGCAAATATTAAT 59.981 37.037 0.00 0.00 0.00 1.40
3143 3387 4.033129 GGTTAAACCAACAAGCCGTTTTTC 59.967 41.667 0.00 0.00 38.42 2.29
3310 3570 2.844946 TGCAGCAGTAAACAGTTAGCA 58.155 42.857 0.00 0.00 0.00 3.49
3359 3619 2.649516 CACGAAAAGAAAGCAATGCGA 58.350 42.857 0.00 0.00 0.00 5.10
3361 3621 2.397549 AGCACGAAAAGAAAGCAATGC 58.602 42.857 0.00 0.00 0.00 3.56
3388 3648 9.562408 TCAGTAAACCAACATACAAAATGTCTA 57.438 29.630 0.00 0.00 0.00 2.59
3411 3671 9.245962 GAGATATTGAAAAGGCAATGAAATCAG 57.754 33.333 0.00 0.00 38.80 2.90
3631 3891 5.416271 GGACATACCTTCCTGACTTGTTA 57.584 43.478 0.00 0.00 35.41 2.41
3649 3909 4.462483 AGCAAAAAGAAACTGAACAGGACA 59.538 37.500 6.76 0.00 0.00 4.02
3671 3931 9.740239 CATACTTATGGAATTTGATTGGACAAG 57.260 33.333 0.00 0.00 0.00 3.16
3724 3988 7.553881 TTTATGAAGAGCACAGTTTATAGGC 57.446 36.000 0.00 0.00 0.00 3.93
3761 4025 2.693069 CTGCAGAACTCCTGTAACCAG 58.307 52.381 8.42 0.00 44.71 4.00
3905 4169 8.956426 TCATGTCTTAAATACAAATTCAGGGAC 58.044 33.333 0.00 0.00 0.00 4.46
3943 4207 8.961294 AATTTTCATTTTCATTCACTGTTGGA 57.039 26.923 0.00 0.00 0.00 3.53
3944 4208 9.440784 CAAATTTTCATTTTCATTCACTGTTGG 57.559 29.630 0.00 0.00 29.41 3.77
4090 4463 8.967664 ACCTGTAAGTACAACAGACAAAATTA 57.032 30.769 22.96 0.00 45.89 1.40
4233 4606 1.001378 GCATTCACCGCAGAAACAGTT 60.001 47.619 0.00 0.00 0.00 3.16
4254 4627 2.928731 GCTCTCAAGTTCCTCCGAAGTG 60.929 54.545 0.00 0.00 31.77 3.16
4260 4633 1.206849 CTCCAGCTCTCAAGTTCCTCC 59.793 57.143 0.00 0.00 0.00 4.30
4344 4717 5.520748 AGATAGTGGAACAAGGGATTGTT 57.479 39.130 6.08 6.08 46.73 2.83
4346 4719 5.059833 GCTAGATAGTGGAACAAGGGATTG 58.940 45.833 0.00 0.00 44.16 2.67
4347 4720 4.721776 TGCTAGATAGTGGAACAAGGGATT 59.278 41.667 0.00 0.00 44.16 3.01
4349 4722 3.706594 CTGCTAGATAGTGGAACAAGGGA 59.293 47.826 0.00 0.00 44.16 4.20
4350 4723 3.706594 TCTGCTAGATAGTGGAACAAGGG 59.293 47.826 0.00 0.00 44.16 3.95
4351 4724 5.543507 ATCTGCTAGATAGTGGAACAAGG 57.456 43.478 0.00 0.00 41.43 3.61
4353 4726 6.381133 TCTGAATCTGCTAGATAGTGGAACAA 59.619 38.462 0.00 0.00 34.58 2.83
4354 4727 5.893824 TCTGAATCTGCTAGATAGTGGAACA 59.106 40.000 0.00 0.00 34.12 3.18
4355 4728 6.398234 TCTGAATCTGCTAGATAGTGGAAC 57.602 41.667 0.00 0.00 32.89 3.62
4356 4729 5.010516 GCTCTGAATCTGCTAGATAGTGGAA 59.989 44.000 0.00 0.00 32.89 3.53
4357 4730 4.522405 GCTCTGAATCTGCTAGATAGTGGA 59.478 45.833 0.00 0.00 32.89 4.02
4359 4732 5.710513 AGCTCTGAATCTGCTAGATAGTG 57.289 43.478 0.00 0.00 32.89 2.74
4360 4733 6.323482 TGAAAGCTCTGAATCTGCTAGATAGT 59.677 38.462 0.00 0.00 32.89 2.12
4365 4741 5.008619 TCTGAAAGCTCTGAATCTGCTAG 57.991 43.478 0.00 0.00 35.85 3.42
4379 4914 1.055338 GCACGCAAACATCTGAAAGC 58.945 50.000 0.00 0.00 0.00 3.51
4380 4915 2.404265 TGCACGCAAACATCTGAAAG 57.596 45.000 0.00 0.00 0.00 2.62
4381 4916 2.607526 CCATGCACGCAAACATCTGAAA 60.608 45.455 0.00 0.00 0.00 2.69
4389 4924 1.784283 GTGTAAACCATGCACGCAAAC 59.216 47.619 0.00 0.00 34.88 2.93
4390 4925 2.126914 GTGTAAACCATGCACGCAAA 57.873 45.000 0.00 0.00 34.88 3.68
4396 4931 4.202315 ACTCAGTACAGTGTAAACCATGCA 60.202 41.667 4.11 0.00 0.00 3.96
4397 4932 4.315803 ACTCAGTACAGTGTAAACCATGC 58.684 43.478 4.11 0.00 0.00 4.06
4398 4933 5.334105 GCAACTCAGTACAGTGTAAACCATG 60.334 44.000 4.11 2.22 0.00 3.66
4399 4934 4.755123 GCAACTCAGTACAGTGTAAACCAT 59.245 41.667 4.11 0.00 0.00 3.55
4400 4935 4.124238 GCAACTCAGTACAGTGTAAACCA 58.876 43.478 4.11 0.00 0.00 3.67
4401 4936 4.377897 AGCAACTCAGTACAGTGTAAACC 58.622 43.478 4.11 0.00 0.00 3.27
4402 4937 5.047847 TGAGCAACTCAGTACAGTGTAAAC 58.952 41.667 4.11 0.00 35.39 2.01
4404 4939 4.929819 TGAGCAACTCAGTACAGTGTAA 57.070 40.909 4.11 0.00 35.39 2.41
4405 4940 4.929819 TTGAGCAACTCAGTACAGTGTA 57.070 40.909 0.00 0.00 41.75 2.90
4406 4941 3.819564 TTGAGCAACTCAGTACAGTGT 57.180 42.857 0.00 0.00 41.75 3.55
4407 4942 4.060900 ACATTGAGCAACTCAGTACAGTG 58.939 43.478 0.00 0.00 41.75 3.66
4409 4944 5.446709 CAAACATTGAGCAACTCAGTACAG 58.553 41.667 0.00 0.00 41.75 2.74
4410 4945 4.261155 GCAAACATTGAGCAACTCAGTACA 60.261 41.667 0.00 0.00 41.75 2.90
4411 4946 4.222114 GCAAACATTGAGCAACTCAGTAC 58.778 43.478 0.00 0.00 41.75 2.73
4413 4948 2.689471 TGCAAACATTGAGCAACTCAGT 59.311 40.909 0.00 0.00 41.75 3.41
4414 4949 3.358707 TGCAAACATTGAGCAACTCAG 57.641 42.857 0.00 0.00 41.75 3.35
4415 4950 3.570975 AGATGCAAACATTGAGCAACTCA 59.429 39.130 0.00 0.00 42.15 3.41
4416 4951 4.170292 AGATGCAAACATTGAGCAACTC 57.830 40.909 0.00 0.00 42.15 3.01
4417 4952 4.595762 AAGATGCAAACATTGAGCAACT 57.404 36.364 0.00 7.16 42.15 3.16
4418 4953 5.922544 AGTTAAGATGCAAACATTGAGCAAC 59.077 36.000 0.00 5.41 42.15 4.17
4449 4994 3.379372 CGCTGACCATTTCATCTTGGATT 59.621 43.478 0.00 0.00 36.79 3.01
4540 5085 8.293157 TCATAAACTTCAATGTTATCGCAAACA 58.707 29.630 5.10 5.10 43.16 2.83
4555 5100 4.625324 CGGGATGGAGGTTCATAAACTTCA 60.625 45.833 0.00 0.00 41.86 3.02
4557 5102 3.886123 CGGGATGGAGGTTCATAAACTT 58.114 45.455 0.00 0.00 35.61 2.66
4577 5122 3.878086 TCAGCACAAAGAAAGTTAGCG 57.122 42.857 0.00 0.00 0.00 4.26
4587 5132 2.415491 CCATCTGCACATCAGCACAAAG 60.415 50.000 0.00 0.00 42.56 2.77
4592 5137 1.029947 CAGCCATCTGCACATCAGCA 61.030 55.000 0.00 0.00 44.83 4.41
4727 5272 2.793288 ACATCCATGTGCTGATGACA 57.207 45.000 14.32 0.00 40.64 3.58
4816 5365 1.072331 ACGGTGCAGATCCAAGTCTTT 59.928 47.619 0.00 0.00 0.00 2.52
4835 5384 3.004734 CCACAGGAAGGATCACAAACAAC 59.995 47.826 0.00 0.00 0.00 3.32
4893 5442 4.505191 CCAGAGCACATTTCACAAAAACAG 59.495 41.667 0.00 0.00 0.00 3.16
4919 5468 6.769822 CCATTCAAAGCCAGACAGAATATAGT 59.230 38.462 0.00 0.00 0.00 2.12
4923 5472 4.943705 GTCCATTCAAAGCCAGACAGAATA 59.056 41.667 0.00 0.00 0.00 1.75
4936 5485 7.994425 TGCTAGATTTAGTTGTCCATTCAAA 57.006 32.000 0.00 0.00 0.00 2.69
4958 5507 4.634184 TCTCCAGAGTAACTACGAATGC 57.366 45.455 0.00 0.00 0.00 3.56
4987 5544 3.928754 AGGGTAGAATAGCACCAGATGA 58.071 45.455 0.00 0.00 41.82 2.92
5004 5561 7.125811 TGCTAGATTTAGTAGTCATTCAAGGGT 59.874 37.037 0.00 0.00 0.00 4.34
5015 5572 9.857957 GAAACTACAAGTGCTAGATTTAGTAGT 57.142 33.333 10.20 10.20 41.69 2.73
5028 5586 5.294552 AGTGAACTGAAGAAACTACAAGTGC 59.705 40.000 0.00 0.00 0.00 4.40
5034 5592 8.874744 AGTTAGAAGTGAACTGAAGAAACTAC 57.125 34.615 0.00 0.00 35.80 2.73
5102 5660 6.951971 AGACTGGATTGCTAACATACTTCTT 58.048 36.000 0.00 0.00 0.00 2.52
5103 5661 6.155221 TGAGACTGGATTGCTAACATACTTCT 59.845 38.462 0.00 0.00 0.00 2.85
5104 5662 6.341316 TGAGACTGGATTGCTAACATACTTC 58.659 40.000 0.00 0.00 0.00 3.01
5115 5673 5.831702 AAAGATTGATGAGACTGGATTGC 57.168 39.130 0.00 0.00 0.00 3.56
5119 5677 8.488668 TGATATGAAAAGATTGATGAGACTGGA 58.511 33.333 0.00 0.00 0.00 3.86
5150 5708 2.579624 TATGGGGAAGGTAAGCCTGA 57.420 50.000 0.00 0.00 46.33 3.86
5155 5713 4.962362 AGCCATTTTTATGGGGAAGGTAAG 59.038 41.667 6.33 0.00 41.94 2.34
5166 5724 7.464977 GCATTAGCAAGTGAAGCCATTTTTATG 60.465 37.037 0.00 0.00 41.58 1.90
5175 5733 1.176527 TGGCATTAGCAAGTGAAGCC 58.823 50.000 0.00 0.00 44.61 4.35
5221 5779 7.864770 TGCTATGTATCCAATCATGATGGTAT 58.135 34.615 9.46 0.58 39.09 2.73
5233 5791 8.870116 ACATTGTATCTACTGCTATGTATCCAA 58.130 33.333 0.00 0.00 0.00 3.53
5240 5798 8.599055 AACATCACATTGTATCTACTGCTATG 57.401 34.615 0.00 0.00 0.00 2.23
5265 5824 6.745116 TCGTCTCAGAGAATTGTGAAAGTTA 58.255 36.000 0.20 0.00 0.00 2.24
5267 5826 5.201713 TCGTCTCAGAGAATTGTGAAAGT 57.798 39.130 0.20 0.00 0.00 2.66
5268 5827 6.146837 ACAATCGTCTCAGAGAATTGTGAAAG 59.853 38.462 22.07 8.15 30.71 2.62
5295 5867 7.177498 TGTACTATCATAAATTTGCTCAGCG 57.823 36.000 0.00 0.00 0.00 5.18
5307 5879 3.995199 GCCTGCAGCTGTACTATCATAA 58.005 45.455 16.64 0.00 38.99 1.90
5308 5880 3.667497 GCCTGCAGCTGTACTATCATA 57.333 47.619 16.64 0.00 38.99 2.15
5325 5897 2.490903 CTGAAGTTTATGCAGCAAGCCT 59.509 45.455 0.00 0.00 44.83 4.58
5349 5921 3.126000 GTCTGTACAATTTGAGCTCTGCC 59.874 47.826 16.19 0.11 0.00 4.85
5375 5947 0.949105 AACTTCGGGTCGTGTGATGC 60.949 55.000 0.00 0.00 0.00 3.91
5377 5949 1.069513 TGAAACTTCGGGTCGTGTGAT 59.930 47.619 0.00 0.00 0.00 3.06
5380 5952 2.929592 GCTATGAAACTTCGGGTCGTGT 60.930 50.000 0.00 0.00 0.00 4.49
5384 5956 2.678336 CCAAGCTATGAAACTTCGGGTC 59.322 50.000 0.00 0.00 0.00 4.46
5388 5960 4.201724 GCACTACCAAGCTATGAAACTTCG 60.202 45.833 0.00 0.00 0.00 3.79
5389 5961 4.938226 AGCACTACCAAGCTATGAAACTTC 59.062 41.667 0.00 0.00 39.78 3.01
5406 5978 5.932619 TCCTATGTTTAGCTCAAGCACTA 57.067 39.130 4.59 0.00 45.16 2.74
5418 5990 8.107095 AGCCTGTAAATGTTCTTCCTATGTTTA 58.893 33.333 0.00 0.00 0.00 2.01
5422 5994 6.825721 AGAAGCCTGTAAATGTTCTTCCTATG 59.174 38.462 0.00 0.00 32.62 2.23
5424 5996 6.374417 AGAAGCCTGTAAATGTTCTTCCTA 57.626 37.500 0.00 0.00 32.62 2.94
5429 6001 5.126396 GCAAAGAAGCCTGTAAATGTTCT 57.874 39.130 0.00 0.00 0.00 3.01
5453 6025 5.734855 ACAAATGTGTAGGAATCATACGC 57.265 39.130 11.17 11.17 35.72 4.42
5494 6067 2.877097 TGCAAGCAACCATTCCTCTA 57.123 45.000 0.00 0.00 0.00 2.43
5548 6121 1.546961 ACTTCCTTGAGACGACGGAT 58.453 50.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.