Multiple sequence alignment - TraesCS3B01G112800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G112800 chr3B 100.000 4159 0 0 1 4159 79118956 79123114 0.000000e+00 7681.0
1 TraesCS3B01G112800 chr3B 100.000 736 0 0 4424 5159 79123379 79124114 0.000000e+00 1360.0
2 TraesCS3B01G112800 chr3B 93.103 174 12 0 4932 5105 651409335 651409508 6.630000e-64 255.0
3 TraesCS3B01G112800 chr3B 100.000 32 0 0 2678 2709 73587675 73587706 5.580000e-05 60.2
4 TraesCS3B01G112800 chr3A 90.475 3034 190 43 3 2986 63064543 63067527 0.000000e+00 3910.0
5 TraesCS3B01G112800 chr3A 96.522 1179 35 4 2987 4159 63067565 63068743 0.000000e+00 1945.0
6 TraesCS3B01G112800 chr3A 90.571 350 18 4 4437 4771 63068795 63069144 2.830000e-122 449.0
7 TraesCS3B01G112800 chr3A 94.186 172 8 2 4760 4929 63071346 63071517 1.420000e-65 261.0
8 TraesCS3B01G112800 chr3D 92.397 1986 83 21 472 2429 49637447 49639392 0.000000e+00 2769.0
9 TraesCS3B01G112800 chr3D 96.862 1179 31 4 2987 4159 49640046 49641224 0.000000e+00 1967.0
10 TraesCS3B01G112800 chr3D 96.649 567 16 2 2427 2991 49639448 49640013 0.000000e+00 939.0
11 TraesCS3B01G112800 chr3D 91.538 520 23 6 4424 4929 49641268 49641780 0.000000e+00 697.0
12 TraesCS3B01G112800 chr3D 88.836 421 40 6 3 420 49637019 49637435 1.280000e-140 510.0
13 TraesCS3B01G112800 chr3D 93.143 175 11 1 4932 5105 77397806 77397980 6.630000e-64 255.0
14 TraesCS3B01G112800 chr1D 81.432 447 68 10 1775 2218 468031860 468032294 8.220000e-93 351.0
15 TraesCS3B01G112800 chr1D 79.276 304 46 13 2498 2793 109974658 109974364 4.080000e-46 196.0
16 TraesCS3B01G112800 chr1D 86.061 165 17 6 1372 1534 109975939 109975779 6.870000e-39 172.0
17 TraesCS3B01G112800 chrUn 93.296 179 11 1 4928 5105 101160633 101160811 3.960000e-66 263.0
18 TraesCS3B01G112800 chrUn 91.667 60 5 0 5100 5159 298893447 298893388 3.310000e-12 84.2
19 TraesCS3B01G112800 chrUn 100.000 32 0 0 2678 2709 8833377 8833408 5.580000e-05 60.2
20 TraesCS3B01G112800 chr4A 91.534 189 14 2 4931 5117 507537493 507537305 5.120000e-65 259.0
21 TraesCS3B01G112800 chr4A 93.143 175 11 1 4932 5105 712114303 712114477 6.630000e-64 255.0
22 TraesCS3B01G112800 chr4A 92.000 175 12 2 4932 5105 712444410 712444237 1.430000e-60 244.0
23 TraesCS3B01G112800 chr4A 92.857 56 4 0 5104 5159 507537301 507537246 1.190000e-11 82.4
24 TraesCS3B01G112800 chr4A 100.000 32 0 0 2678 2709 735595592 735595623 5.580000e-05 60.2
25 TraesCS3B01G112800 chr7A 92.135 178 14 0 4928 5105 63571236 63571413 8.580000e-63 252.0
26 TraesCS3B01G112800 chr7A 91.667 60 5 0 5100 5159 63571426 63571485 3.310000e-12 84.2
27 TraesCS3B01G112800 chr2D 92.135 178 13 1 4929 5105 349300081 349300258 3.080000e-62 250.0
28 TraesCS3B01G112800 chr2D 91.667 60 5 0 5100 5159 349300271 349300330 3.310000e-12 84.2
29 TraesCS3B01G112800 chr5D 91.573 178 14 1 4928 5105 496943313 496943489 1.430000e-60 244.0
30 TraesCS3B01G112800 chr5D 81.897 232 18 11 4928 5159 434608259 434608466 1.910000e-39 174.0
31 TraesCS3B01G112800 chr5D 93.333 60 3 1 5100 5159 496943502 496943560 2.560000e-13 87.9
32 TraesCS3B01G112800 chr7B 85.514 214 22 1 2005 2218 599101206 599101410 1.130000e-51 215.0
33 TraesCS3B01G112800 chr1A 79.032 310 51 10 2489 2793 113859899 113859599 3.150000e-47 200.0
34 TraesCS3B01G112800 chr1A 88.966 145 12 4 1372 1514 113861155 113861013 5.310000e-40 176.0
35 TraesCS3B01G112800 chr1A 91.667 60 5 0 5100 5159 573037632 573037573 3.310000e-12 84.2
36 TraesCS3B01G112800 chr1A 91.667 60 5 0 5100 5159 573048978 573048919 3.310000e-12 84.2
37 TraesCS3B01G112800 chr1A 100.000 32 0 0 2678 2709 69993920 69993951 5.580000e-05 60.2
38 TraesCS3B01G112800 chr1B 78.914 313 49 13 2489 2793 166593295 166592992 4.080000e-46 196.0
39 TraesCS3B01G112800 chr1B 88.276 145 13 4 1372 1514 166594594 166594452 2.470000e-38 171.0
40 TraesCS3B01G112800 chr4D 100.000 32 0 0 2678 2709 73444234 73444265 5.580000e-05 60.2
41 TraesCS3B01G112800 chr5A 100.000 31 0 0 2678 2708 706493266 706493236 2.010000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G112800 chr3B 79118956 79124114 5158 False 4520.50 7681 100.0000 1 5159 2 chr3B.!!$F3 5158
1 TraesCS3B01G112800 chr3A 63064543 63071517 6974 False 1641.25 3910 92.9385 3 4929 4 chr3A.!!$F1 4926
2 TraesCS3B01G112800 chr3D 49637019 49641780 4761 False 1376.40 2769 93.2564 3 4929 5 chr3D.!!$F2 4926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 491 0.105039 CGCCTTCGCCTCCTCTTATT 59.895 55.000 0.00 0.0 0.00 1.40 F
1180 1216 0.035439 TCCGAGCACCTGGATTTTCC 60.035 55.000 0.00 0.0 36.96 3.13 F
1679 1737 0.322456 TGGAAATCTTGGGCTCGTGG 60.322 55.000 0.00 0.0 0.00 4.94 F
1903 1967 0.750249 GAAGGGAGCTAGACTGAGCC 59.250 60.000 0.00 0.0 43.97 4.70 F
2250 2316 1.064758 TGTTCCTTGCTTCCACTGTGT 60.065 47.619 7.08 0.0 0.00 3.72 F
3991 4164 1.078918 CATGAACGCTGCTCCTCCA 60.079 57.895 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1335 1385 0.321122 AGAGCACGGGAAGCAAGAAG 60.321 55.000 0.00 0.0 0.00 2.85 R
2225 2291 0.383949 TGGAAGCAAGGAACAAACGC 59.616 50.000 0.00 0.0 0.00 4.84 R
3432 3605 0.040067 CGAAGGCAAGAACCAAGCAC 60.040 55.000 0.00 0.0 0.00 4.40 R
3764 3937 1.771255 GGAGAACCACCATCCAGCTAT 59.229 52.381 0.00 0.0 35.97 2.97 R
4121 4294 0.254178 CATTACACTCAGGGCTGGCT 59.746 55.000 0.00 0.0 0.00 4.75 R
5052 7456 0.034960 TGCTATTTGCCAGCGGGTTA 60.035 50.000 4.36 0.0 42.13 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.548668 CCATGCAACAGCAATGATAAACG 59.451 43.478 0.00 0.00 42.37 3.60
38 39 3.057876 ACAGCAATGATAAACGCCGAAAA 60.058 39.130 0.00 0.00 0.00 2.29
89 91 1.268539 CCGTGGTTGCTCTGTTGAAAC 60.269 52.381 0.00 0.00 0.00 2.78
148 153 6.473778 CGATATATTGCTTCTGTATTCCCTCG 59.526 42.308 0.00 0.00 0.00 4.63
158 163 4.407621 TCTGTATTCCCTCGGCAAATAAGA 59.592 41.667 0.00 0.00 0.00 2.10
194 199 7.055667 TGCAAAAAGGACACCAACATTATAA 57.944 32.000 0.00 0.00 0.00 0.98
195 200 7.675062 TGCAAAAAGGACACCAACATTATAAT 58.325 30.769 0.00 0.00 0.00 1.28
222 227 0.883833 TTCTCCGTTGGTACCGTCTC 59.116 55.000 7.57 0.00 0.00 3.36
251 256 4.659172 CGCTTTGTGCCTCCCCCA 62.659 66.667 0.00 0.00 38.78 4.96
277 288 1.703411 CAACACCCACCTCCACAATT 58.297 50.000 0.00 0.00 0.00 2.32
318 329 1.064758 TGTCTGGCCTCTCTCTCTCTC 60.065 57.143 3.32 0.00 0.00 3.20
320 331 1.922447 TCTGGCCTCTCTCTCTCTCTT 59.078 52.381 3.32 0.00 0.00 2.85
354 365 3.494924 CCCTACTTTGATCGATGCCATGA 60.495 47.826 0.54 0.00 0.00 3.07
402 414 3.256704 ACCAACCTATCTTCAAGTCCCA 58.743 45.455 0.00 0.00 0.00 4.37
435 447 1.461897 CCCACCGTTGTAAATGTCGTC 59.538 52.381 0.00 0.00 0.00 4.20
449 461 1.949133 TCGTCGTTGCTGCTGTGTC 60.949 57.895 0.00 0.00 0.00 3.67
460 472 0.950555 TGCTGTGTCGCAACCTCATC 60.951 55.000 0.00 0.00 36.89 2.92
466 478 1.447838 TCGCAACCTCATCGCCTTC 60.448 57.895 0.00 0.00 0.00 3.46
479 491 0.105039 CGCCTTCGCCTCCTCTTATT 59.895 55.000 0.00 0.00 0.00 1.40
507 525 0.541392 CCCCAGTCATCGTCATCCAA 59.459 55.000 0.00 0.00 0.00 3.53
513 531 1.134098 GTCATCGTCATCCAACCCCAT 60.134 52.381 0.00 0.00 0.00 4.00
514 532 2.104111 GTCATCGTCATCCAACCCCATA 59.896 50.000 0.00 0.00 0.00 2.74
524 542 1.064314 CCAACCCCATAAATCCGACCA 60.064 52.381 0.00 0.00 0.00 4.02
535 553 2.471084 ATCCGACCACCTTCCCCTCA 62.471 60.000 0.00 0.00 0.00 3.86
572 590 2.023414 TATGTCGCACCCTAAGCCCG 62.023 60.000 0.00 0.00 0.00 6.13
597 615 4.735662 TTTACACATTCACACGTTAGGC 57.264 40.909 0.00 0.00 0.00 3.93
607 625 7.551262 ACATTCACACGTTAGGCTATTCATTTA 59.449 33.333 0.00 0.00 0.00 1.40
610 628 5.293324 CACACGTTAGGCTATTCATTTAGCA 59.707 40.000 0.00 0.00 45.21 3.49
757 777 3.490439 TCAATGAGTTGAGTCCAGCAA 57.510 42.857 0.00 0.00 39.36 3.91
848 868 3.376546 GCACCTACTGCGTACTACTACTT 59.623 47.826 0.00 0.00 35.72 2.24
849 869 4.730035 GCACCTACTGCGTACTACTACTTG 60.730 50.000 0.00 0.00 35.72 3.16
881 904 2.749839 CCCGGAGCAAATCGCCAA 60.750 61.111 0.73 0.00 44.04 4.52
882 905 2.764314 CCCGGAGCAAATCGCCAAG 61.764 63.158 0.73 0.00 44.04 3.61
889 912 1.978617 CAAATCGCCAAGCACCCCT 60.979 57.895 0.00 0.00 0.00 4.79
1170 1206 2.107953 GATCCAGCTCCGAGCACC 59.892 66.667 22.29 2.91 45.56 5.01
1180 1216 0.035439 TCCGAGCACCTGGATTTTCC 60.035 55.000 0.00 0.00 36.96 3.13
1271 1321 3.423536 CGATCGGAATGTGATCTTCTTCG 59.576 47.826 7.38 0.00 40.05 3.79
1540 1590 0.682532 TCTCGCTCTCCAGATGTGCT 60.683 55.000 0.00 0.00 0.00 4.40
1640 1691 1.202222 GCGAGGTCGAGATTCGGTTAA 60.202 52.381 2.94 0.00 40.88 2.01
1654 1712 0.672711 GGTTAAGGTCGTGGGCAGTC 60.673 60.000 0.00 0.00 0.00 3.51
1679 1737 0.322456 TGGAAATCTTGGGCTCGTGG 60.322 55.000 0.00 0.00 0.00 4.94
1862 1926 7.147549 ACAGCTATTAATGCTTAGGGTGACTTA 60.148 37.037 8.96 0.00 38.92 2.24
1897 1961 1.314730 CGAGGAGAAGGGAGCTAGAC 58.685 60.000 0.00 0.00 0.00 2.59
1903 1967 0.750249 GAAGGGAGCTAGACTGAGCC 59.250 60.000 0.00 0.00 43.97 4.70
1925 1989 4.152402 CCTACATAGTGCCAAACGATATGC 59.848 45.833 0.00 0.00 0.00 3.14
1967 2032 9.959721 AGTGGTTCATCTAAACATATTTGTAGT 57.040 29.630 0.00 0.00 37.07 2.73
2058 2124 2.081955 AAGCTGGCATCTCCTGGTT 58.918 52.632 0.00 0.46 45.70 3.67
2151 2217 1.299976 GGGGTTCGGAGTGCTCAAT 59.700 57.895 1.41 0.00 0.00 2.57
2160 2226 1.407851 GGAGTGCTCAATGGCATCTCA 60.408 52.381 0.00 0.00 44.34 3.27
2193 2259 5.013495 TCTCAATCTGAGTCTGGGTTTCAAT 59.987 40.000 3.71 0.00 44.58 2.57
2219 2285 4.020928 TGTTGGTTTCTATCAGGTAAGCGA 60.021 41.667 0.00 0.00 0.00 4.93
2220 2286 4.119442 TGGTTTCTATCAGGTAAGCGAC 57.881 45.455 0.00 0.00 0.00 5.19
2221 2287 3.767673 TGGTTTCTATCAGGTAAGCGACT 59.232 43.478 0.00 0.00 0.00 4.18
2222 2288 4.222145 TGGTTTCTATCAGGTAAGCGACTT 59.778 41.667 0.00 0.00 0.00 3.01
2223 2289 5.419788 TGGTTTCTATCAGGTAAGCGACTTA 59.580 40.000 0.00 0.00 0.00 2.24
2224 2290 6.071221 TGGTTTCTATCAGGTAAGCGACTTAA 60.071 38.462 0.00 0.00 0.00 1.85
2225 2291 6.476053 GGTTTCTATCAGGTAAGCGACTTAAG 59.524 42.308 0.00 0.00 0.00 1.85
2226 2292 5.184340 TCTATCAGGTAAGCGACTTAAGC 57.816 43.478 1.29 0.00 0.00 3.09
2227 2293 2.273370 TCAGGTAAGCGACTTAAGCG 57.727 50.000 1.29 8.55 40.04 4.68
2228 2294 1.542915 TCAGGTAAGCGACTTAAGCGT 59.457 47.619 16.75 1.09 40.04 5.07
2250 2316 1.064758 TGTTCCTTGCTTCCACTGTGT 60.065 47.619 7.08 0.00 0.00 3.72
2251 2317 2.024414 GTTCCTTGCTTCCACTGTGTT 58.976 47.619 7.08 0.00 0.00 3.32
2301 2367 6.814954 TTCAGTTCCTTATCTAGAATGGCT 57.185 37.500 0.00 0.00 0.00 4.75
2436 2560 7.892778 TTCAGTTAAGTTATTACATGTCGCA 57.107 32.000 0.00 0.00 0.00 5.10
2609 2737 6.712095 CCATGTCCACTATGCTGTGTAATAAT 59.288 38.462 0.00 0.00 36.30 1.28
2766 2894 1.210155 GGCAATCGTCACAACCTGC 59.790 57.895 0.00 0.00 0.00 4.85
2850 2978 2.201732 GCTTGCCAAATCATCTGCATG 58.798 47.619 0.00 0.00 33.08 4.06
2853 2981 4.678574 GCTTGCCAAATCATCTGCATGTAA 60.679 41.667 0.00 0.00 33.08 2.41
2948 3078 4.015084 GACTCCCTACAGCTACTGTGTTA 58.985 47.826 10.42 0.00 45.01 2.41
2958 3088 7.228314 ACAGCTACTGTGTTATCTTAACAGA 57.772 36.000 8.90 0.00 43.63 3.41
3003 3176 7.103641 TGTTGAACATATACCTCTTGGTTCTC 58.896 38.462 0.00 0.00 46.05 2.87
3015 3188 5.300286 CCTCTTGGTTCTCAAACAACTTCAT 59.700 40.000 0.00 0.00 37.10 2.57
3177 3350 3.573538 TGTTCATTGTTGGTCCATTCCTG 59.426 43.478 0.00 0.00 0.00 3.86
3252 3425 7.793948 AGTTCTGGTAAGTATTGAACTAGGT 57.206 36.000 0.00 0.00 43.45 3.08
3281 3454 8.307483 TGAAAACTTACCTTGATTTTTGACACA 58.693 29.630 0.00 0.00 0.00 3.72
3432 3605 2.093447 AGTCCTTGGCCATCTAAAGACG 60.093 50.000 6.09 0.00 0.00 4.18
3526 3699 1.307647 GCAGTGGTTGGGATGGGAT 59.692 57.895 0.00 0.00 0.00 3.85
3587 3760 1.980765 TGAAGCCTCTCCACAAGTCAT 59.019 47.619 0.00 0.00 0.00 3.06
3631 3804 6.579666 TTATCATTGTGCTTTGAGCTCTTT 57.420 33.333 16.19 0.00 42.97 2.52
3986 4159 3.869272 CGGGCATGAACGCTGCTC 61.869 66.667 0.00 0.00 39.60 4.26
3991 4164 1.078918 CATGAACGCTGCTCCTCCA 60.079 57.895 0.00 0.00 0.00 3.86
4103 4276 9.988815 ATTATTCAGTTTAGTAGGCAGATAGTG 57.011 33.333 0.00 0.00 0.00 2.74
4518 4701 8.977505 GTTGAAGCTAAGATACAAAATTGCAAA 58.022 29.630 1.71 0.00 0.00 3.68
4520 4703 9.709495 TGAAGCTAAGATACAAAATTGCAAATT 57.291 25.926 1.71 0.00 0.00 1.82
4563 4749 6.966632 TGTATTATTTTTCGCATGTTCAGCTC 59.033 34.615 0.00 0.00 0.00 4.09
4565 4751 0.881118 TTTTCGCATGTTCAGCTCCC 59.119 50.000 0.00 0.00 0.00 4.30
4667 4854 4.768448 TGCATGATCTGTGGTGATCTTTTT 59.232 37.500 0.00 0.00 42.30 1.94
4669 4856 6.127925 TGCATGATCTGTGGTGATCTTTTTAC 60.128 38.462 0.00 0.00 42.30 2.01
4683 4871 7.435192 GTGATCTTTTTACCTTTCAGTTTGTGG 59.565 37.037 0.00 0.00 0.00 4.17
4714 4904 4.202503 TGCATTTTTCTCTCTCTTGGGTCT 60.203 41.667 0.00 0.00 0.00 3.85
4730 4920 2.104792 GGGTCTCATATGCCAGTTGCTA 59.895 50.000 0.00 0.00 42.00 3.49
4753 4943 7.172703 GCTAAAGACAAGACTTGTTTAGGCTAA 59.827 37.037 26.46 2.04 43.32 3.09
4778 7182 3.306917 TGTTGAAGAAATGCATGCCAG 57.693 42.857 16.68 0.00 0.00 4.85
4906 7310 2.899900 GGATGGTGGGAAGCTTTCTTTT 59.100 45.455 4.35 0.00 31.48 2.27
4943 7347 9.676195 AAACAAACAAATTCTTTTTGACAAAGG 57.324 25.926 11.37 0.00 34.84 3.11
4944 7348 7.815641 ACAAACAAATTCTTTTTGACAAAGGG 58.184 30.769 11.37 0.00 34.84 3.95
4945 7349 7.446931 ACAAACAAATTCTTTTTGACAAAGGGT 59.553 29.630 11.37 0.00 34.84 4.34
4946 7350 6.983474 ACAAATTCTTTTTGACAAAGGGTG 57.017 33.333 0.10 0.00 33.83 4.61
4947 7351 5.879777 ACAAATTCTTTTTGACAAAGGGTGG 59.120 36.000 0.10 0.00 33.83 4.61
4948 7352 5.948742 AATTCTTTTTGACAAAGGGTGGA 57.051 34.783 0.10 0.00 0.00 4.02
4949 7353 6.499106 AATTCTTTTTGACAAAGGGTGGAT 57.501 33.333 0.10 0.00 0.00 3.41
4950 7354 5.948742 TTCTTTTTGACAAAGGGTGGATT 57.051 34.783 0.10 0.00 0.00 3.01
4951 7355 5.948742 TCTTTTTGACAAAGGGTGGATTT 57.051 34.783 0.10 0.00 0.00 2.17
4952 7356 6.306643 TCTTTTTGACAAAGGGTGGATTTT 57.693 33.333 0.10 0.00 0.00 1.82
4953 7357 7.425224 TCTTTTTGACAAAGGGTGGATTTTA 57.575 32.000 0.10 0.00 0.00 1.52
4954 7358 8.028652 TCTTTTTGACAAAGGGTGGATTTTAT 57.971 30.769 0.10 0.00 0.00 1.40
4955 7359 8.490311 TCTTTTTGACAAAGGGTGGATTTTATT 58.510 29.630 0.10 0.00 0.00 1.40
4956 7360 8.443953 TTTTTGACAAAGGGTGGATTTTATTG 57.556 30.769 0.10 0.00 0.00 1.90
4957 7361 6.985653 TTGACAAAGGGTGGATTTTATTGA 57.014 33.333 0.00 0.00 0.00 2.57
4958 7362 6.339587 TGACAAAGGGTGGATTTTATTGAC 57.660 37.500 0.00 0.00 0.00 3.18
4959 7363 6.074648 TGACAAAGGGTGGATTTTATTGACT 58.925 36.000 0.00 0.00 0.00 3.41
4960 7364 6.553100 TGACAAAGGGTGGATTTTATTGACTT 59.447 34.615 0.00 0.00 0.00 3.01
4961 7365 7.726291 TGACAAAGGGTGGATTTTATTGACTTA 59.274 33.333 0.00 0.00 0.00 2.24
4962 7366 8.485578 ACAAAGGGTGGATTTTATTGACTTAA 57.514 30.769 0.00 0.00 0.00 1.85
4963 7367 8.929487 ACAAAGGGTGGATTTTATTGACTTAAA 58.071 29.630 0.00 0.00 0.00 1.52
4964 7368 9.771534 CAAAGGGTGGATTTTATTGACTTAAAA 57.228 29.630 0.00 0.00 35.98 1.52
4966 7370 9.942850 AAGGGTGGATTTTATTGACTTAAAATG 57.057 29.630 6.85 0.00 40.25 2.32
4967 7371 9.320295 AGGGTGGATTTTATTGACTTAAAATGA 57.680 29.630 6.85 0.00 40.25 2.57
4968 7372 9.936759 GGGTGGATTTTATTGACTTAAAATGAA 57.063 29.630 6.85 0.00 40.25 2.57
4979 7383 8.578308 TTGACTTAAAATGAAGCATCAAGTTG 57.422 30.769 0.00 0.00 39.49 3.16
4980 7384 7.939782 TGACTTAAAATGAAGCATCAAGTTGA 58.060 30.769 8.27 8.27 39.49 3.18
4981 7385 8.579006 TGACTTAAAATGAAGCATCAAGTTGAT 58.421 29.630 12.75 12.75 39.49 2.57
4983 7387 9.846248 ACTTAAAATGAAGCATCAAGTTGATAC 57.154 29.630 17.86 12.72 39.49 2.24
4984 7388 9.844790 CTTAAAATGAAGCATCAAGTTGATACA 57.155 29.630 17.86 14.80 39.49 2.29
4987 7391 8.524870 AAATGAAGCATCAAGTTGATACAAAC 57.475 30.769 17.86 8.60 39.49 2.93
4988 7392 6.631971 TGAAGCATCAAGTTGATACAAACA 57.368 33.333 17.86 10.76 34.28 2.83
4989 7393 6.437928 TGAAGCATCAAGTTGATACAAACAC 58.562 36.000 17.86 7.16 34.28 3.32
4990 7394 5.034554 AGCATCAAGTTGATACAAACACG 57.965 39.130 17.86 4.81 34.28 4.49
4991 7395 4.754618 AGCATCAAGTTGATACAAACACGA 59.245 37.500 17.86 0.00 34.28 4.35
4992 7396 5.412594 AGCATCAAGTTGATACAAACACGAT 59.587 36.000 17.86 0.00 34.28 3.73
4993 7397 5.509272 GCATCAAGTTGATACAAACACGATG 59.491 40.000 17.86 4.39 40.43 3.84
4994 7398 6.620518 GCATCAAGTTGATACAAACACGATGA 60.621 38.462 17.86 5.63 40.18 2.92
4995 7399 6.466308 TCAAGTTGATACAAACACGATGAG 57.534 37.500 0.08 0.00 32.21 2.90
4996 7400 6.220201 TCAAGTTGATACAAACACGATGAGA 58.780 36.000 0.08 0.00 32.21 3.27
4997 7401 6.704050 TCAAGTTGATACAAACACGATGAGAA 59.296 34.615 0.08 0.00 32.21 2.87
4998 7402 6.467723 AGTTGATACAAACACGATGAGAAC 57.532 37.500 0.00 0.00 32.21 3.01
4999 7403 5.989168 AGTTGATACAAACACGATGAGAACA 59.011 36.000 0.00 0.00 32.21 3.18
5000 7404 5.839262 TGATACAAACACGATGAGAACAC 57.161 39.130 0.00 0.00 0.00 3.32
5001 7405 5.293560 TGATACAAACACGATGAGAACACA 58.706 37.500 0.00 0.00 0.00 3.72
5002 7406 3.944422 ACAAACACGATGAGAACACAC 57.056 42.857 0.00 0.00 0.00 3.82
5003 7407 2.612212 ACAAACACGATGAGAACACACC 59.388 45.455 0.00 0.00 0.00 4.16
5004 7408 1.878953 AACACGATGAGAACACACCC 58.121 50.000 0.00 0.00 0.00 4.61
5005 7409 0.319555 ACACGATGAGAACACACCCG 60.320 55.000 0.00 0.00 0.00 5.28
5006 7410 1.014044 CACGATGAGAACACACCCGG 61.014 60.000 0.00 0.00 0.00 5.73
5007 7411 2.100631 CGATGAGAACACACCCGGC 61.101 63.158 0.00 0.00 0.00 6.13
5008 7412 1.745489 GATGAGAACACACCCGGCC 60.745 63.158 0.00 0.00 0.00 6.13
5009 7413 2.185310 GATGAGAACACACCCGGCCT 62.185 60.000 0.00 0.00 0.00 5.19
5010 7414 2.047179 GAGAACACACCCGGCCTC 60.047 66.667 0.00 0.00 0.00 4.70
5011 7415 2.526873 AGAACACACCCGGCCTCT 60.527 61.111 0.00 0.00 0.00 3.69
5012 7416 2.358737 GAACACACCCGGCCTCTG 60.359 66.667 0.00 0.00 0.00 3.35
5013 7417 4.643387 AACACACCCGGCCTCTGC 62.643 66.667 0.00 0.00 0.00 4.26
5015 7419 4.415150 CACACCCGGCCTCTGCAT 62.415 66.667 0.00 0.00 40.13 3.96
5016 7420 2.687200 ACACCCGGCCTCTGCATA 60.687 61.111 0.00 0.00 40.13 3.14
5017 7421 2.297895 ACACCCGGCCTCTGCATAA 61.298 57.895 0.00 0.00 40.13 1.90
5018 7422 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
5019 7423 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
5020 7424 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
5021 7425 0.468226 CCCGGCCTCTGCATAACTAA 59.532 55.000 0.00 0.00 40.13 2.24
5022 7426 1.541233 CCCGGCCTCTGCATAACTAAG 60.541 57.143 0.00 0.00 40.13 2.18
5023 7427 1.412710 CCGGCCTCTGCATAACTAAGA 59.587 52.381 0.00 0.00 40.13 2.10
5024 7428 2.037772 CCGGCCTCTGCATAACTAAGAT 59.962 50.000 0.00 0.00 40.13 2.40
5025 7429 3.062763 CGGCCTCTGCATAACTAAGATG 58.937 50.000 0.00 0.00 40.13 2.90
5041 7445 2.755724 TGCACATAGGCAGCACCA 59.244 55.556 0.00 0.00 43.14 4.17
5042 7446 1.074599 TGCACATAGGCAGCACCAA 59.925 52.632 0.00 0.00 43.14 3.67
5043 7447 1.243342 TGCACATAGGCAGCACCAAC 61.243 55.000 0.00 0.00 43.14 3.77
5044 7448 1.243342 GCACATAGGCAGCACCAACA 61.243 55.000 0.00 0.00 43.14 3.33
5045 7449 0.523072 CACATAGGCAGCACCAACAC 59.477 55.000 0.00 0.00 43.14 3.32
5046 7450 0.110295 ACATAGGCAGCACCAACACA 59.890 50.000 0.00 0.00 43.14 3.72
5047 7451 0.523072 CATAGGCAGCACCAACACAC 59.477 55.000 0.00 0.00 43.14 3.82
5048 7452 0.110295 ATAGGCAGCACCAACACACA 59.890 50.000 0.00 0.00 43.14 3.72
5049 7453 0.817634 TAGGCAGCACCAACACACAC 60.818 55.000 0.00 0.00 43.14 3.82
5050 7454 2.413963 GGCAGCACCAACACACACA 61.414 57.895 0.00 0.00 38.86 3.72
5051 7455 1.510383 GCAGCACCAACACACACAA 59.490 52.632 0.00 0.00 0.00 3.33
5052 7456 0.102844 GCAGCACCAACACACACAAT 59.897 50.000 0.00 0.00 0.00 2.71
5053 7457 1.336440 GCAGCACCAACACACACAATA 59.664 47.619 0.00 0.00 0.00 1.90
5054 7458 2.223688 GCAGCACCAACACACACAATAA 60.224 45.455 0.00 0.00 0.00 1.40
5055 7459 3.371168 CAGCACCAACACACACAATAAC 58.629 45.455 0.00 0.00 0.00 1.89
5056 7460 2.360801 AGCACCAACACACACAATAACC 59.639 45.455 0.00 0.00 0.00 2.85
5057 7461 2.544903 GCACCAACACACACAATAACCC 60.545 50.000 0.00 0.00 0.00 4.11
5058 7462 1.950909 ACCAACACACACAATAACCCG 59.049 47.619 0.00 0.00 0.00 5.28
5059 7463 1.335506 CCAACACACACAATAACCCGC 60.336 52.381 0.00 0.00 0.00 6.13
5060 7464 1.606668 CAACACACACAATAACCCGCT 59.393 47.619 0.00 0.00 0.00 5.52
5061 7465 1.234821 ACACACACAATAACCCGCTG 58.765 50.000 0.00 0.00 0.00 5.18
5062 7466 0.521291 CACACACAATAACCCGCTGG 59.479 55.000 0.00 0.00 37.80 4.85
5063 7467 1.241315 ACACACAATAACCCGCTGGC 61.241 55.000 0.00 0.00 33.59 4.85
5064 7468 1.074072 ACACAATAACCCGCTGGCA 59.926 52.632 0.00 0.00 33.59 4.92
5065 7469 0.538516 ACACAATAACCCGCTGGCAA 60.539 50.000 0.00 0.00 33.59 4.52
5066 7470 0.600557 CACAATAACCCGCTGGCAAA 59.399 50.000 0.00 0.00 33.59 3.68
5067 7471 1.204467 CACAATAACCCGCTGGCAAAT 59.796 47.619 0.00 0.00 33.59 2.32
5068 7472 2.425312 CACAATAACCCGCTGGCAAATA 59.575 45.455 0.00 0.00 33.59 1.40
5069 7473 2.687935 ACAATAACCCGCTGGCAAATAG 59.312 45.455 0.00 0.00 33.59 1.73
5070 7474 1.318576 ATAACCCGCTGGCAAATAGC 58.681 50.000 0.00 0.00 44.65 2.97
5087 7491 7.930217 GCAAATAGCAAAGTCATATAAGACCA 58.070 34.615 4.52 0.00 44.79 4.02
5088 7492 8.405531 GCAAATAGCAAAGTCATATAAGACCAA 58.594 33.333 4.52 0.00 44.79 3.67
5097 7501 8.854614 AAGTCATATAAGACCAAATCTATGCC 57.145 34.615 4.52 0.00 39.34 4.40
5098 7502 8.212259 AGTCATATAAGACCAAATCTATGCCT 57.788 34.615 4.52 0.00 39.34 4.75
5099 7503 9.326489 AGTCATATAAGACCAAATCTATGCCTA 57.674 33.333 4.52 0.00 39.34 3.93
5100 7504 9.944376 GTCATATAAGACCAAATCTATGCCTAA 57.056 33.333 0.00 0.00 36.27 2.69
5102 7506 8.887717 CATATAAGACCAAATCTATGCCTAAGC 58.112 37.037 0.00 0.00 36.27 3.09
5103 7507 3.733337 AGACCAAATCTATGCCTAAGCG 58.267 45.455 0.00 0.00 37.67 4.68
5104 7508 3.388024 AGACCAAATCTATGCCTAAGCGA 59.612 43.478 0.00 0.00 37.67 4.93
5105 7509 4.127171 GACCAAATCTATGCCTAAGCGAA 58.873 43.478 0.00 0.00 44.31 4.70
5106 7510 3.877508 ACCAAATCTATGCCTAAGCGAAC 59.122 43.478 0.00 0.00 44.31 3.95
5107 7511 3.876914 CCAAATCTATGCCTAAGCGAACA 59.123 43.478 0.00 0.00 44.31 3.18
5108 7512 4.335315 CCAAATCTATGCCTAAGCGAACAA 59.665 41.667 0.00 0.00 44.31 2.83
5109 7513 5.163663 CCAAATCTATGCCTAAGCGAACAAA 60.164 40.000 0.00 0.00 44.31 2.83
5110 7514 6.460123 CCAAATCTATGCCTAAGCGAACAAAT 60.460 38.462 0.00 0.00 44.31 2.32
5111 7515 5.931441 ATCTATGCCTAAGCGAACAAATC 57.069 39.130 0.00 0.00 44.31 2.17
5112 7516 4.127171 TCTATGCCTAAGCGAACAAATCC 58.873 43.478 0.00 0.00 44.31 3.01
5113 7517 1.083489 TGCCTAAGCGAACAAATCCG 58.917 50.000 0.00 0.00 44.31 4.18
5118 7522 4.571257 GCGAACAAATCCGCGATC 57.429 55.556 8.23 0.00 42.02 3.69
5119 7523 1.366494 GCGAACAAATCCGCGATCG 60.366 57.895 11.69 11.69 42.02 3.69
5120 7524 1.748647 GCGAACAAATCCGCGATCGA 61.749 55.000 21.57 0.00 42.02 3.59
5121 7525 0.044161 CGAACAAATCCGCGATCGAC 60.044 55.000 21.57 9.43 38.10 4.20
5122 7526 0.996462 GAACAAATCCGCGATCGACA 59.004 50.000 21.57 0.77 38.10 4.35
5123 7527 1.392168 GAACAAATCCGCGATCGACAA 59.608 47.619 21.57 2.39 38.10 3.18
5124 7528 1.434555 ACAAATCCGCGATCGACAAA 58.565 45.000 21.57 0.35 38.10 2.83
5125 7529 1.127951 ACAAATCCGCGATCGACAAAC 59.872 47.619 21.57 0.00 38.10 2.93
5126 7530 1.393539 CAAATCCGCGATCGACAAACT 59.606 47.619 21.57 0.00 38.10 2.66
5127 7531 2.572191 AATCCGCGATCGACAAACTA 57.428 45.000 21.57 0.00 38.10 2.24
5128 7532 1.836383 ATCCGCGATCGACAAACTAC 58.164 50.000 21.57 0.00 38.10 2.73
5129 7533 0.522626 TCCGCGATCGACAAACTACA 59.477 50.000 21.57 0.00 38.10 2.74
5130 7534 1.068402 TCCGCGATCGACAAACTACAA 60.068 47.619 21.57 0.00 38.10 2.41
5131 7535 1.058695 CCGCGATCGACAAACTACAAC 59.941 52.381 21.57 0.00 38.10 3.32
5132 7536 1.717113 CGCGATCGACAAACTACAACA 59.283 47.619 21.57 0.00 38.10 3.33
5133 7537 2.154198 CGCGATCGACAAACTACAACAA 59.846 45.455 21.57 0.00 38.10 2.83
5134 7538 3.181534 CGCGATCGACAAACTACAACAAT 60.182 43.478 21.57 0.00 38.10 2.71
5135 7539 4.081761 GCGATCGACAAACTACAACAATG 58.918 43.478 21.57 0.00 0.00 2.82
5136 7540 4.637968 CGATCGACAAACTACAACAATGG 58.362 43.478 10.26 0.00 0.00 3.16
5137 7541 3.889196 TCGACAAACTACAACAATGGC 57.111 42.857 0.00 0.00 0.00 4.40
5138 7542 3.472652 TCGACAAACTACAACAATGGCT 58.527 40.909 0.00 0.00 0.00 4.75
5139 7543 4.633175 TCGACAAACTACAACAATGGCTA 58.367 39.130 0.00 0.00 0.00 3.93
5140 7544 5.242434 TCGACAAACTACAACAATGGCTAT 58.758 37.500 0.00 0.00 0.00 2.97
5141 7545 6.399743 TCGACAAACTACAACAATGGCTATA 58.600 36.000 0.00 0.00 0.00 1.31
5142 7546 7.045416 TCGACAAACTACAACAATGGCTATAT 58.955 34.615 0.00 0.00 0.00 0.86
5143 7547 7.223971 TCGACAAACTACAACAATGGCTATATC 59.776 37.037 0.00 0.00 0.00 1.63
5144 7548 7.518370 CGACAAACTACAACAATGGCTATATCC 60.518 40.741 0.00 0.00 0.00 2.59
5145 7549 7.116075 ACAAACTACAACAATGGCTATATCCA 58.884 34.615 0.00 0.00 40.97 3.41
5147 7551 9.283768 CAAACTACAACAATGGCTATATCCATA 57.716 33.333 8.51 0.00 45.64 2.74
5148 7552 8.848474 AACTACAACAATGGCTATATCCATAC 57.152 34.615 8.51 0.00 45.64 2.39
5149 7553 7.394816 ACTACAACAATGGCTATATCCATACC 58.605 38.462 8.51 0.00 45.64 2.73
5150 7554 6.199557 ACAACAATGGCTATATCCATACCA 57.800 37.500 8.51 0.00 45.64 3.25
5151 7555 6.609876 ACAACAATGGCTATATCCATACCAA 58.390 36.000 8.51 0.00 45.64 3.67
5152 7556 6.490040 ACAACAATGGCTATATCCATACCAAC 59.510 38.462 8.51 0.00 45.64 3.77
5153 7557 5.570320 ACAATGGCTATATCCATACCAACC 58.430 41.667 8.51 0.00 45.64 3.77
5154 7558 5.074377 ACAATGGCTATATCCATACCAACCA 59.926 40.000 8.51 0.00 45.64 3.67
5155 7559 6.189859 CAATGGCTATATCCATACCAACCAT 58.810 40.000 8.51 0.00 45.64 3.55
5156 7560 5.435686 TGGCTATATCCATACCAACCATC 57.564 43.478 0.00 0.00 0.00 3.51
5157 7561 5.100811 TGGCTATATCCATACCAACCATCT 58.899 41.667 0.00 0.00 0.00 2.90
5158 7562 5.189736 TGGCTATATCCATACCAACCATCTC 59.810 44.000 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.093021 TGCTGTTGCATGGCATAGTCTA 60.093 45.455 0.00 0.00 45.31 2.59
1 2 1.340308 TGCTGTTGCATGGCATAGTCT 60.340 47.619 0.00 0.00 45.31 3.24
16 17 1.732941 TCGGCGTTTATCATTGCTGT 58.267 45.000 6.85 0.00 35.27 4.40
89 91 4.616802 ACAAAAATAGAAGCAAATGACGCG 59.383 37.500 3.53 3.53 0.00 6.01
148 153 7.035004 TGCAAAGTTACATGATCTTATTTGCC 58.965 34.615 22.27 12.66 46.52 4.52
158 163 6.701400 GTGTCCTTTTTGCAAAGTTACATGAT 59.299 34.615 12.41 0.00 38.22 2.45
194 199 5.583457 CGGTACCAACGGAGAAAGAATTTAT 59.417 40.000 13.54 0.00 39.27 1.40
195 200 4.931002 CGGTACCAACGGAGAAAGAATTTA 59.069 41.667 13.54 0.00 39.27 1.40
251 256 4.887190 GGTGGGTGTTGGCGTGGT 62.887 66.667 0.00 0.00 0.00 4.16
262 267 1.715785 CCAAAATTGTGGAGGTGGGT 58.284 50.000 9.27 0.00 41.65 4.51
297 308 1.102978 GAGAGAGAGAGGCCAGACAC 58.897 60.000 5.01 0.00 0.00 3.67
300 311 1.595311 AGAGAGAGAGAGAGGCCAGA 58.405 55.000 5.01 0.00 0.00 3.86
303 314 2.456577 ACAAAGAGAGAGAGAGAGGCC 58.543 52.381 0.00 0.00 0.00 5.19
305 316 4.082245 GGACAACAAAGAGAGAGAGAGAGG 60.082 50.000 0.00 0.00 0.00 3.69
307 318 3.829601 GGGACAACAAAGAGAGAGAGAGA 59.170 47.826 0.00 0.00 0.00 3.10
308 319 3.576118 TGGGACAACAAAGAGAGAGAGAG 59.424 47.826 0.00 0.00 31.92 3.20
309 320 3.322254 GTGGGACAACAAAGAGAGAGAGA 59.678 47.826 0.00 0.00 44.16 3.10
310 321 3.658709 GTGGGACAACAAAGAGAGAGAG 58.341 50.000 0.00 0.00 44.16 3.20
369 380 1.745489 GGTTGGTCGAGATGTGGGC 60.745 63.158 0.00 0.00 0.00 5.36
421 433 3.215244 CAGCAACGACGACATTTACAAC 58.785 45.455 0.00 0.00 0.00 3.32
422 434 2.349060 GCAGCAACGACGACATTTACAA 60.349 45.455 0.00 0.00 0.00 2.41
435 447 3.639008 TGCGACACAGCAGCAACG 61.639 61.111 0.00 0.00 42.92 4.10
449 461 2.802667 CGAAGGCGATGAGGTTGCG 61.803 63.158 0.00 0.00 40.82 4.85
466 478 2.029838 AGCAACAATAAGAGGAGGCG 57.970 50.000 0.00 0.00 0.00 5.52
479 491 1.338674 CGATGACTGGGGTTAGCAACA 60.339 52.381 0.00 0.00 0.00 3.33
507 525 0.549469 GGTGGTCGGATTTATGGGGT 59.451 55.000 0.00 0.00 0.00 4.95
513 531 0.913924 GGGGAAGGTGGTCGGATTTA 59.086 55.000 0.00 0.00 0.00 1.40
514 532 0.845102 AGGGGAAGGTGGTCGGATTT 60.845 55.000 0.00 0.00 0.00 2.17
524 542 1.081174 TGAAGGAGATGAGGGGAAGGT 59.919 52.381 0.00 0.00 0.00 3.50
535 553 1.568504 TAAGCACGGGTGAAGGAGAT 58.431 50.000 2.38 0.00 0.00 2.75
572 590 6.304126 CCTAACGTGTGAATGTGTAAATGAC 58.696 40.000 0.00 0.00 0.00 3.06
642 660 6.349243 TCCAATTCATTCAACTTTGAGCAT 57.651 33.333 0.00 0.00 38.61 3.79
724 744 5.984926 TCAACTCATTGAAATTGCTTTGGTC 59.015 36.000 5.74 0.00 41.99 4.02
757 777 1.477558 GGTCGATCATCATTTGCCCCT 60.478 52.381 0.00 0.00 0.00 4.79
848 868 2.306219 TCCGGGGACATGTTTGATTACA 59.694 45.455 0.00 0.00 0.00 2.41
849 869 2.943033 CTCCGGGGACATGTTTGATTAC 59.057 50.000 0.00 0.00 0.00 1.89
882 905 6.856895 GATTATTAATCATAGCAAGGGGTGC 58.143 40.000 10.84 0.00 44.49 5.01
897 920 6.465321 CCAGGGACCTAACCGTGATTATTAAT 60.465 42.308 0.00 0.00 45.20 1.40
900 923 3.135895 CCAGGGACCTAACCGTGATTATT 59.864 47.826 0.00 0.00 45.20 1.40
910 933 2.187163 GCTCGCCAGGGACCTAAC 59.813 66.667 0.00 0.00 0.00 2.34
1123 1159 3.219928 GCGCGGGGAGATCTGAGA 61.220 66.667 8.83 0.00 0.00 3.27
1180 1216 1.799258 GCAGCACCACCAACCTCTTG 61.799 60.000 0.00 0.00 0.00 3.02
1334 1384 1.916697 GAGCACGGGAAGCAAGAAGC 61.917 60.000 0.00 0.00 46.19 3.86
1335 1385 0.321122 AGAGCACGGGAAGCAAGAAG 60.321 55.000 0.00 0.00 0.00 2.85
1336 1386 0.603707 CAGAGCACGGGAAGCAAGAA 60.604 55.000 0.00 0.00 0.00 2.52
1436 1486 0.461961 CAATGGAGACCGAGGAGACC 59.538 60.000 0.00 0.00 0.00 3.85
1487 1537 3.031013 TCTCATACCGAAGATGAAGCCA 58.969 45.455 0.00 0.00 0.00 4.75
1540 1590 2.217038 AGCAAGGACAAGGAGCGGA 61.217 57.895 0.00 0.00 0.00 5.54
1654 1712 1.017387 GCCCAAGATTTCCACTAGCG 58.983 55.000 0.00 0.00 0.00 4.26
1679 1737 6.039616 TGCAGTTCACAGTAAACAAAATTCC 58.960 36.000 0.00 0.00 0.00 3.01
1772 1836 1.678635 ATGATGTGCCAACCCACGG 60.679 57.895 0.00 0.00 38.55 4.94
1845 1909 3.844211 TCCAGTAAGTCACCCTAAGCATT 59.156 43.478 0.00 0.00 0.00 3.56
1862 1926 2.705658 TCCTCGGCATATTCATTCCAGT 59.294 45.455 0.00 0.00 0.00 4.00
1897 1961 2.939103 GTTTGGCACTATGTAGGCTCAG 59.061 50.000 0.00 0.00 0.00 3.35
1903 1967 4.991056 AGCATATCGTTTGGCACTATGTAG 59.009 41.667 0.00 0.00 0.00 2.74
1925 1989 6.516718 TGAACCACTACTCTTTTCTTCTCAG 58.483 40.000 0.00 0.00 0.00 3.35
1962 2027 8.564574 CAATCTACCTGCTTTTGTTTTACTACA 58.435 33.333 0.00 0.00 0.00 2.74
1966 2031 5.633601 GGCAATCTACCTGCTTTTGTTTTAC 59.366 40.000 0.00 0.00 39.82 2.01
1967 2032 5.279256 GGGCAATCTACCTGCTTTTGTTTTA 60.279 40.000 0.00 0.00 39.82 1.52
1968 2033 4.503123 GGGCAATCTACCTGCTTTTGTTTT 60.503 41.667 0.00 0.00 39.82 2.43
2115 2181 2.126071 ATGACGGTCCTTGCGTCG 60.126 61.111 5.55 0.00 35.65 5.12
2151 2217 1.006281 AGAAGCCCAATTGAGATGCCA 59.994 47.619 7.12 0.00 0.00 4.92
2193 2259 5.938125 GCTTACCTGATAGAAACCAACAGAA 59.062 40.000 0.00 0.00 0.00 3.02
2219 2285 2.949644 AGCAAGGAACAAACGCTTAAGT 59.050 40.909 4.02 0.00 0.00 2.24
2220 2286 3.626028 AGCAAGGAACAAACGCTTAAG 57.374 42.857 0.00 0.00 0.00 1.85
2221 2287 3.243267 GGAAGCAAGGAACAAACGCTTAA 60.243 43.478 0.00 0.00 42.69 1.85
2222 2288 2.292292 GGAAGCAAGGAACAAACGCTTA 59.708 45.455 0.00 0.00 42.69 3.09
2223 2289 1.067060 GGAAGCAAGGAACAAACGCTT 59.933 47.619 0.00 0.00 45.17 4.68
2224 2290 0.668535 GGAAGCAAGGAACAAACGCT 59.331 50.000 0.00 0.00 33.45 5.07
2225 2291 0.383949 TGGAAGCAAGGAACAAACGC 59.616 50.000 0.00 0.00 0.00 4.84
2226 2292 1.676006 AGTGGAAGCAAGGAACAAACG 59.324 47.619 0.00 0.00 0.00 3.60
2227 2293 2.427095 ACAGTGGAAGCAAGGAACAAAC 59.573 45.455 0.00 0.00 0.00 2.93
2228 2294 2.426738 CACAGTGGAAGCAAGGAACAAA 59.573 45.455 0.00 0.00 0.00 2.83
2301 2367 3.199071 ACGTCCCATCCAAAGCAACTATA 59.801 43.478 0.00 0.00 0.00 1.31
2436 2560 1.374252 GGTCGGACAACGCACTCAT 60.374 57.895 10.76 0.00 43.86 2.90
2853 2981 8.612619 GTGTAGCTAGTTACATGCAACATTTAT 58.387 33.333 20.53 0.00 36.08 1.40
2907 3035 7.750655 GGGAGTCCCTTCTAATCATTATTTCT 58.249 38.462 22.04 0.00 41.34 2.52
2925 3055 1.751924 CACAGTAGCTGTAGGGAGTCC 59.248 57.143 0.00 0.00 43.43 3.85
2958 3088 8.974060 TCAACAGGAAAGTAGAAATAAAGTGT 57.026 30.769 0.00 0.00 0.00 3.55
3029 3202 4.454728 AATCGCACACCATAAAGCAAAT 57.545 36.364 0.00 0.00 0.00 2.32
3108 3281 1.625315 TGGTACAGCAGCTGAGTTGAT 59.375 47.619 29.70 7.83 35.18 2.57
3177 3350 8.306761 ACATTTTTGTTAGTCAGAAATCCATCC 58.693 33.333 0.00 0.00 38.31 3.51
3252 3425 9.145865 GTCAAAAATCAAGGTAAGTTTTCACAA 57.854 29.630 0.00 0.00 0.00 3.33
3281 3454 7.392673 AGAACAAACTATGAATCACATGAAGCT 59.607 33.333 0.00 0.00 39.77 3.74
3432 3605 0.040067 CGAAGGCAAGAACCAAGCAC 60.040 55.000 0.00 0.00 0.00 4.40
3526 3699 5.989168 CACGGGTGCAGAAGTATGAATATAA 59.011 40.000 0.00 0.00 0.00 0.98
3610 3783 6.770746 ATAAAGAGCTCAAAGCACAATGAT 57.229 33.333 17.77 0.00 45.56 2.45
3764 3937 1.771255 GGAGAACCACCATCCAGCTAT 59.229 52.381 0.00 0.00 35.97 2.97
3790 3963 2.235402 TGTAGCAGTAACCCAGGTAAGC 59.765 50.000 0.00 0.00 0.00 3.09
4121 4294 0.254178 CATTACACTCAGGGCTGGCT 59.746 55.000 0.00 0.00 0.00 4.75
4514 4697 0.688749 ATCCCCTGCCCAGAATTTGC 60.689 55.000 0.00 0.00 0.00 3.68
4518 4701 0.029267 AGAGATCCCCTGCCCAGAAT 60.029 55.000 0.00 0.00 0.00 2.40
4520 4703 0.984961 CAAGAGATCCCCTGCCCAGA 60.985 60.000 0.00 0.00 0.00 3.86
4565 4751 1.073177 AAAGTTACAACCGCGGATCG 58.927 50.000 35.90 21.36 38.08 3.69
4667 4854 7.335924 GCATCTTATACCACAAACTGAAAGGTA 59.664 37.037 0.00 0.00 39.30 3.08
4669 4856 6.150976 TGCATCTTATACCACAAACTGAAAGG 59.849 38.462 0.00 0.00 39.30 3.11
4730 4920 7.719633 TGATTAGCCTAAACAAGTCTTGTCTTT 59.280 33.333 18.42 12.37 44.59 2.52
4753 4943 4.873827 GGCATGCATTTCTTCAACAATGAT 59.126 37.500 21.36 0.00 34.96 2.45
4885 7289 2.222227 AAGAAAGCTTCCCACCATCC 57.778 50.000 0.00 0.00 0.00 3.51
4930 7334 8.558700 CAATAAAATCCACCCTTTGTCAAAAAG 58.441 33.333 0.00 0.00 0.00 2.27
4931 7335 8.267894 TCAATAAAATCCACCCTTTGTCAAAAA 58.732 29.630 0.00 0.00 0.00 1.94
4932 7336 7.713073 GTCAATAAAATCCACCCTTTGTCAAAA 59.287 33.333 0.00 0.00 0.00 2.44
4933 7337 7.070571 AGTCAATAAAATCCACCCTTTGTCAAA 59.929 33.333 0.00 0.00 0.00 2.69
4934 7338 6.553100 AGTCAATAAAATCCACCCTTTGTCAA 59.447 34.615 0.00 0.00 0.00 3.18
4935 7339 6.074648 AGTCAATAAAATCCACCCTTTGTCA 58.925 36.000 0.00 0.00 0.00 3.58
4936 7340 6.590234 AGTCAATAAAATCCACCCTTTGTC 57.410 37.500 0.00 0.00 0.00 3.18
4937 7341 6.994421 AAGTCAATAAAATCCACCCTTTGT 57.006 33.333 0.00 0.00 0.00 2.83
4938 7342 9.771534 TTTTAAGTCAATAAAATCCACCCTTTG 57.228 29.630 0.00 0.00 31.59 2.77
4940 7344 9.942850 CATTTTAAGTCAATAAAATCCACCCTT 57.057 29.630 2.86 0.00 41.30 3.95
4941 7345 9.320295 TCATTTTAAGTCAATAAAATCCACCCT 57.680 29.630 2.86 0.00 41.30 4.34
4942 7346 9.936759 TTCATTTTAAGTCAATAAAATCCACCC 57.063 29.630 2.86 0.00 41.30 4.61
4953 7357 9.199982 CAACTTGATGCTTCATTTTAAGTCAAT 57.800 29.630 2.75 0.00 29.56 2.57
4954 7358 8.412456 TCAACTTGATGCTTCATTTTAAGTCAA 58.588 29.630 2.75 0.00 29.56 3.18
4955 7359 7.939782 TCAACTTGATGCTTCATTTTAAGTCA 58.060 30.769 2.75 0.00 29.56 3.41
4956 7360 8.976986 ATCAACTTGATGCTTCATTTTAAGTC 57.023 30.769 3.32 0.00 35.43 3.01
4957 7361 9.846248 GTATCAACTTGATGCTTCATTTTAAGT 57.154 29.630 13.66 0.90 37.70 2.24
4958 7362 9.844790 TGTATCAACTTGATGCTTCATTTTAAG 57.155 29.630 17.57 0.28 39.71 1.85
4961 7365 8.981647 GTTTGTATCAACTTGATGCTTCATTTT 58.018 29.630 17.57 0.00 39.71 1.82
4962 7366 8.143193 TGTTTGTATCAACTTGATGCTTCATTT 58.857 29.630 17.57 0.00 39.71 2.32
4963 7367 7.596248 GTGTTTGTATCAACTTGATGCTTCATT 59.404 33.333 17.57 0.00 39.71 2.57
4964 7368 7.086376 GTGTTTGTATCAACTTGATGCTTCAT 58.914 34.615 17.57 0.00 39.71 2.57
4965 7369 6.437928 GTGTTTGTATCAACTTGATGCTTCA 58.562 36.000 17.57 11.96 39.71 3.02
4966 7370 5.565259 CGTGTTTGTATCAACTTGATGCTTC 59.435 40.000 17.57 10.17 39.71 3.86
4967 7371 5.238432 TCGTGTTTGTATCAACTTGATGCTT 59.762 36.000 17.57 0.00 39.71 3.91
4968 7372 4.754618 TCGTGTTTGTATCAACTTGATGCT 59.245 37.500 17.57 0.00 39.71 3.79
4969 7373 5.029650 TCGTGTTTGTATCAACTTGATGC 57.970 39.130 13.66 12.67 37.70 3.91
4970 7374 6.830736 TCATCGTGTTTGTATCAACTTGATG 58.169 36.000 13.66 10.07 37.70 3.07
4971 7375 6.873605 TCTCATCGTGTTTGTATCAACTTGAT 59.126 34.615 9.26 9.26 40.72 2.57
4972 7376 6.220201 TCTCATCGTGTTTGTATCAACTTGA 58.780 36.000 0.00 0.00 0.00 3.02
4973 7377 6.466308 TCTCATCGTGTTTGTATCAACTTG 57.534 37.500 0.00 0.00 0.00 3.16
4974 7378 6.481976 TGTTCTCATCGTGTTTGTATCAACTT 59.518 34.615 0.00 0.00 0.00 2.66
4975 7379 5.989168 TGTTCTCATCGTGTTTGTATCAACT 59.011 36.000 0.00 0.00 0.00 3.16
4976 7380 6.071463 GTGTTCTCATCGTGTTTGTATCAAC 58.929 40.000 0.00 0.00 0.00 3.18
4977 7381 5.755861 TGTGTTCTCATCGTGTTTGTATCAA 59.244 36.000 0.00 0.00 0.00 2.57
4978 7382 5.176774 GTGTGTTCTCATCGTGTTTGTATCA 59.823 40.000 0.00 0.00 0.00 2.15
4979 7383 5.389516 GGTGTGTTCTCATCGTGTTTGTATC 60.390 44.000 0.00 0.00 0.00 2.24
4980 7384 4.451096 GGTGTGTTCTCATCGTGTTTGTAT 59.549 41.667 0.00 0.00 0.00 2.29
4981 7385 3.805422 GGTGTGTTCTCATCGTGTTTGTA 59.195 43.478 0.00 0.00 0.00 2.41
4982 7386 2.612212 GGTGTGTTCTCATCGTGTTTGT 59.388 45.455 0.00 0.00 0.00 2.83
4983 7387 2.032030 GGGTGTGTTCTCATCGTGTTTG 60.032 50.000 0.00 0.00 0.00 2.93
4984 7388 2.218603 GGGTGTGTTCTCATCGTGTTT 58.781 47.619 0.00 0.00 0.00 2.83
4985 7389 1.872237 CGGGTGTGTTCTCATCGTGTT 60.872 52.381 0.00 0.00 0.00 3.32
4986 7390 0.319555 CGGGTGTGTTCTCATCGTGT 60.320 55.000 0.00 0.00 0.00 4.49
4987 7391 1.014044 CCGGGTGTGTTCTCATCGTG 61.014 60.000 0.00 0.00 0.00 4.35
4988 7392 1.292223 CCGGGTGTGTTCTCATCGT 59.708 57.895 0.00 0.00 0.00 3.73
4989 7393 2.100631 GCCGGGTGTGTTCTCATCG 61.101 63.158 2.18 0.00 0.00 3.84
4990 7394 1.745489 GGCCGGGTGTGTTCTCATC 60.745 63.158 2.18 0.00 0.00 2.92
4991 7395 2.185310 GAGGCCGGGTGTGTTCTCAT 62.185 60.000 2.18 0.00 0.00 2.90
4992 7396 2.847234 AGGCCGGGTGTGTTCTCA 60.847 61.111 2.18 0.00 0.00 3.27
4993 7397 2.047179 GAGGCCGGGTGTGTTCTC 60.047 66.667 2.18 0.00 0.00 2.87
4994 7398 2.526873 AGAGGCCGGGTGTGTTCT 60.527 61.111 2.18 0.00 0.00 3.01
4995 7399 2.358737 CAGAGGCCGGGTGTGTTC 60.359 66.667 2.18 0.00 0.00 3.18
4996 7400 4.643387 GCAGAGGCCGGGTGTGTT 62.643 66.667 2.18 0.00 0.00 3.32
4998 7402 2.535485 TTATGCAGAGGCCGGGTGTG 62.535 60.000 2.18 0.00 40.13 3.82
4999 7403 2.297895 TTATGCAGAGGCCGGGTGT 61.298 57.895 2.18 0.00 40.13 4.16
5000 7404 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
5001 7405 0.689745 TAGTTATGCAGAGGCCGGGT 60.690 55.000 2.18 0.00 40.13 5.28
5002 7406 0.468226 TTAGTTATGCAGAGGCCGGG 59.532 55.000 2.18 0.00 40.13 5.73
5003 7407 1.412710 TCTTAGTTATGCAGAGGCCGG 59.587 52.381 0.00 0.00 40.13 6.13
5004 7408 2.890808 TCTTAGTTATGCAGAGGCCG 57.109 50.000 0.00 0.00 40.13 6.13
5013 7417 5.106791 GCTGCCTATGTGCATCTTAGTTATG 60.107 44.000 0.00 0.00 41.16 1.90
5014 7418 4.999950 GCTGCCTATGTGCATCTTAGTTAT 59.000 41.667 0.00 0.00 41.16 1.89
5015 7419 4.141733 TGCTGCCTATGTGCATCTTAGTTA 60.142 41.667 0.00 0.00 41.16 2.24
5016 7420 3.209410 GCTGCCTATGTGCATCTTAGTT 58.791 45.455 0.00 0.00 41.16 2.24
5017 7421 2.171237 TGCTGCCTATGTGCATCTTAGT 59.829 45.455 0.00 0.00 41.16 2.24
5018 7422 2.547211 GTGCTGCCTATGTGCATCTTAG 59.453 50.000 0.00 0.00 41.16 2.18
5019 7423 2.564771 GTGCTGCCTATGTGCATCTTA 58.435 47.619 0.00 0.00 41.16 2.10
5020 7424 1.386533 GTGCTGCCTATGTGCATCTT 58.613 50.000 0.00 0.00 41.16 2.40
5021 7425 0.465097 GGTGCTGCCTATGTGCATCT 60.465 55.000 0.00 0.00 41.16 2.90
5022 7426 0.749091 TGGTGCTGCCTATGTGCATC 60.749 55.000 0.00 0.00 41.16 3.91
5023 7427 0.323633 TTGGTGCTGCCTATGTGCAT 60.324 50.000 0.00 0.00 41.16 3.96
5024 7428 1.074599 TTGGTGCTGCCTATGTGCA 59.925 52.632 0.00 0.00 39.37 4.57
5025 7429 1.243342 TGTTGGTGCTGCCTATGTGC 61.243 55.000 0.00 0.00 38.35 4.57
5026 7430 0.523072 GTGTTGGTGCTGCCTATGTG 59.477 55.000 0.00 0.00 38.35 3.21
5027 7431 0.110295 TGTGTTGGTGCTGCCTATGT 59.890 50.000 0.00 0.00 38.35 2.29
5028 7432 0.523072 GTGTGTTGGTGCTGCCTATG 59.477 55.000 0.00 0.00 38.35 2.23
5029 7433 0.110295 TGTGTGTTGGTGCTGCCTAT 59.890 50.000 0.00 0.00 38.35 2.57
5030 7434 0.817634 GTGTGTGTTGGTGCTGCCTA 60.818 55.000 0.00 0.00 38.35 3.93
5031 7435 2.120909 GTGTGTGTTGGTGCTGCCT 61.121 57.895 0.00 0.00 38.35 4.75
5032 7436 1.943116 TTGTGTGTGTTGGTGCTGCC 61.943 55.000 0.00 0.00 37.90 4.85
5033 7437 0.102844 ATTGTGTGTGTTGGTGCTGC 59.897 50.000 0.00 0.00 0.00 5.25
5034 7438 3.371168 GTTATTGTGTGTGTTGGTGCTG 58.629 45.455 0.00 0.00 0.00 4.41
5035 7439 2.360801 GGTTATTGTGTGTGTTGGTGCT 59.639 45.455 0.00 0.00 0.00 4.40
5036 7440 2.544903 GGGTTATTGTGTGTGTTGGTGC 60.545 50.000 0.00 0.00 0.00 5.01
5037 7441 2.287308 CGGGTTATTGTGTGTGTTGGTG 60.287 50.000 0.00 0.00 0.00 4.17
5038 7442 1.950909 CGGGTTATTGTGTGTGTTGGT 59.049 47.619 0.00 0.00 0.00 3.67
5039 7443 1.335506 GCGGGTTATTGTGTGTGTTGG 60.336 52.381 0.00 0.00 0.00 3.77
5040 7444 1.606668 AGCGGGTTATTGTGTGTGTTG 59.393 47.619 0.00 0.00 0.00 3.33
5041 7445 1.606668 CAGCGGGTTATTGTGTGTGTT 59.393 47.619 0.00 0.00 0.00 3.32
5042 7446 1.234821 CAGCGGGTTATTGTGTGTGT 58.765 50.000 0.00 0.00 0.00 3.72
5043 7447 0.521291 CCAGCGGGTTATTGTGTGTG 59.479 55.000 0.00 0.00 0.00 3.82
5044 7448 1.241315 GCCAGCGGGTTATTGTGTGT 61.241 55.000 4.36 0.00 36.17 3.72
5045 7449 1.240641 TGCCAGCGGGTTATTGTGTG 61.241 55.000 4.36 0.00 36.17 3.82
5046 7450 0.538516 TTGCCAGCGGGTTATTGTGT 60.539 50.000 4.36 0.00 36.17 3.72
5047 7451 0.600557 TTTGCCAGCGGGTTATTGTG 59.399 50.000 4.36 0.00 36.17 3.33
5048 7452 1.555967 ATTTGCCAGCGGGTTATTGT 58.444 45.000 4.36 0.00 36.17 2.71
5049 7453 2.543653 GCTATTTGCCAGCGGGTTATTG 60.544 50.000 4.36 0.00 36.17 1.90
5050 7454 1.681264 GCTATTTGCCAGCGGGTTATT 59.319 47.619 4.36 0.00 36.17 1.40
5051 7455 1.318576 GCTATTTGCCAGCGGGTTAT 58.681 50.000 4.36 0.00 36.17 1.89
5052 7456 0.034960 TGCTATTTGCCAGCGGGTTA 60.035 50.000 4.36 0.00 42.13 2.85
5053 7457 0.897863 TTGCTATTTGCCAGCGGGTT 60.898 50.000 4.36 0.00 42.13 4.11
5054 7458 0.897863 TTTGCTATTTGCCAGCGGGT 60.898 50.000 4.36 0.00 42.13 5.28
5055 7459 0.179129 CTTTGCTATTTGCCAGCGGG 60.179 55.000 0.00 0.00 42.13 6.13
5056 7460 0.527565 ACTTTGCTATTTGCCAGCGG 59.472 50.000 0.00 0.00 42.13 5.52
5057 7461 1.199789 TGACTTTGCTATTTGCCAGCG 59.800 47.619 0.00 0.00 42.13 5.18
5058 7462 3.515330 ATGACTTTGCTATTTGCCAGC 57.485 42.857 0.00 0.00 42.00 4.85
5059 7463 8.072567 GTCTTATATGACTTTGCTATTTGCCAG 58.927 37.037 10.70 0.00 36.08 4.85
5060 7464 7.013274 GGTCTTATATGACTTTGCTATTTGCCA 59.987 37.037 15.98 0.00 37.72 4.92
5061 7465 7.013274 TGGTCTTATATGACTTTGCTATTTGCC 59.987 37.037 15.98 0.00 37.72 4.52
5062 7466 7.930217 TGGTCTTATATGACTTTGCTATTTGC 58.070 34.615 15.98 0.00 38.36 3.68
5071 7475 9.289782 GGCATAGATTTGGTCTTATATGACTTT 57.710 33.333 15.98 2.31 38.42 2.66
5072 7476 8.664079 AGGCATAGATTTGGTCTTATATGACTT 58.336 33.333 15.98 2.59 35.99 3.01
5073 7477 8.212259 AGGCATAGATTTGGTCTTATATGACT 57.788 34.615 15.98 0.00 35.06 3.41
5074 7478 9.944376 TTAGGCATAGATTTGGTCTTATATGAC 57.056 33.333 9.70 9.70 38.42 3.06
5076 7480 8.887717 GCTTAGGCATAGATTTGGTCTTATATG 58.112 37.037 0.00 0.00 37.09 1.78
5077 7481 7.766278 CGCTTAGGCATAGATTTGGTCTTATAT 59.234 37.037 0.00 0.00 37.01 0.86
5078 7482 7.039293 TCGCTTAGGCATAGATTTGGTCTTATA 60.039 37.037 0.00 0.00 37.01 0.98
5079 7483 5.934625 CGCTTAGGCATAGATTTGGTCTTAT 59.065 40.000 0.00 0.00 37.01 1.73
5080 7484 5.069914 TCGCTTAGGCATAGATTTGGTCTTA 59.930 40.000 0.00 0.00 37.01 2.10
5081 7485 4.130118 CGCTTAGGCATAGATTTGGTCTT 58.870 43.478 0.00 0.00 37.01 3.01
5082 7486 3.388024 TCGCTTAGGCATAGATTTGGTCT 59.612 43.478 0.00 0.00 38.50 3.85
5083 7487 3.728845 TCGCTTAGGCATAGATTTGGTC 58.271 45.455 0.00 0.00 38.60 4.02
5084 7488 3.838244 TCGCTTAGGCATAGATTTGGT 57.162 42.857 0.00 0.00 38.60 3.67
5085 7489 3.876914 TGTTCGCTTAGGCATAGATTTGG 59.123 43.478 0.00 0.00 38.60 3.28
5086 7490 5.484173 TTGTTCGCTTAGGCATAGATTTG 57.516 39.130 0.00 0.00 38.60 2.32
5087 7491 6.238759 GGATTTGTTCGCTTAGGCATAGATTT 60.239 38.462 0.00 0.00 38.60 2.17
5088 7492 5.239525 GGATTTGTTCGCTTAGGCATAGATT 59.760 40.000 0.00 0.00 38.60 2.40
5089 7493 4.757149 GGATTTGTTCGCTTAGGCATAGAT 59.243 41.667 0.00 0.00 38.60 1.98
5090 7494 4.127171 GGATTTGTTCGCTTAGGCATAGA 58.873 43.478 0.00 0.00 38.60 1.98
5091 7495 3.059597 CGGATTTGTTCGCTTAGGCATAG 60.060 47.826 0.00 0.00 38.60 2.23
5092 7496 2.869801 CGGATTTGTTCGCTTAGGCATA 59.130 45.455 0.00 0.00 38.60 3.14
5093 7497 1.670811 CGGATTTGTTCGCTTAGGCAT 59.329 47.619 0.00 0.00 38.60 4.40
5094 7498 1.083489 CGGATTTGTTCGCTTAGGCA 58.917 50.000 0.00 0.00 38.60 4.75
5095 7499 3.897819 CGGATTTGTTCGCTTAGGC 57.102 52.632 0.00 0.00 0.00 3.93
5102 7506 0.044161 GTCGATCGCGGATTTGTTCG 60.044 55.000 11.09 4.44 38.28 3.95
5103 7507 0.996462 TGTCGATCGCGGATTTGTTC 59.004 50.000 11.09 0.00 38.28 3.18
5104 7508 1.434555 TTGTCGATCGCGGATTTGTT 58.565 45.000 11.09 0.00 38.28 2.83
5105 7509 1.127951 GTTTGTCGATCGCGGATTTGT 59.872 47.619 11.09 0.00 38.28 2.83
5106 7510 1.393539 AGTTTGTCGATCGCGGATTTG 59.606 47.619 11.09 0.00 38.28 2.32
5107 7511 1.722011 AGTTTGTCGATCGCGGATTT 58.278 45.000 11.09 0.00 38.28 2.17
5108 7512 2.190981 GTAGTTTGTCGATCGCGGATT 58.809 47.619 11.09 0.00 38.28 3.01
5109 7513 1.133598 TGTAGTTTGTCGATCGCGGAT 59.866 47.619 11.09 0.00 38.28 4.18
5110 7514 0.522626 TGTAGTTTGTCGATCGCGGA 59.477 50.000 11.09 0.00 38.28 5.54
5111 7515 1.058695 GTTGTAGTTTGTCGATCGCGG 59.941 52.381 11.09 0.00 38.28 6.46
5112 7516 1.717113 TGTTGTAGTTTGTCGATCGCG 59.283 47.619 11.09 0.00 39.35 5.87
5113 7517 3.781341 TTGTTGTAGTTTGTCGATCGC 57.219 42.857 11.09 6.41 0.00 4.58
5114 7518 4.637968 CCATTGTTGTAGTTTGTCGATCG 58.362 43.478 9.36 9.36 0.00 3.69
5115 7519 4.154195 AGCCATTGTTGTAGTTTGTCGATC 59.846 41.667 0.00 0.00 0.00 3.69
5116 7520 4.072131 AGCCATTGTTGTAGTTTGTCGAT 58.928 39.130 0.00 0.00 0.00 3.59
5117 7521 3.472652 AGCCATTGTTGTAGTTTGTCGA 58.527 40.909 0.00 0.00 0.00 4.20
5118 7522 3.896648 AGCCATTGTTGTAGTTTGTCG 57.103 42.857 0.00 0.00 0.00 4.35
5119 7523 7.282224 TGGATATAGCCATTGTTGTAGTTTGTC 59.718 37.037 5.37 0.00 31.66 3.18
5120 7524 7.116075 TGGATATAGCCATTGTTGTAGTTTGT 58.884 34.615 5.37 0.00 31.66 2.83
5121 7525 7.566760 TGGATATAGCCATTGTTGTAGTTTG 57.433 36.000 5.37 0.00 31.66 2.93
5122 7526 9.284968 GTATGGATATAGCCATTGTTGTAGTTT 57.715 33.333 26.63 2.29 46.29 2.66
5123 7527 7.883311 GGTATGGATATAGCCATTGTTGTAGTT 59.117 37.037 26.63 2.82 46.29 2.24
5124 7528 7.017155 TGGTATGGATATAGCCATTGTTGTAGT 59.983 37.037 26.63 3.57 46.29 2.73
5125 7529 7.394016 TGGTATGGATATAGCCATTGTTGTAG 58.606 38.462 26.63 0.00 46.29 2.74
5126 7530 7.323052 TGGTATGGATATAGCCATTGTTGTA 57.677 36.000 26.63 5.83 46.29 2.41
5127 7531 6.199557 TGGTATGGATATAGCCATTGTTGT 57.800 37.500 26.63 5.81 46.29 3.32
5128 7532 6.071952 GGTTGGTATGGATATAGCCATTGTTG 60.072 42.308 26.63 0.00 46.29 3.33
5129 7533 6.010219 GGTTGGTATGGATATAGCCATTGTT 58.990 40.000 26.63 6.96 46.29 2.83
5130 7534 5.074377 TGGTTGGTATGGATATAGCCATTGT 59.926 40.000 26.63 7.34 46.29 2.71
5131 7535 5.569355 TGGTTGGTATGGATATAGCCATTG 58.431 41.667 26.63 0.00 46.29 2.82
5132 7536 5.858876 TGGTTGGTATGGATATAGCCATT 57.141 39.130 26.63 11.70 46.29 3.16
5134 7538 5.100811 AGATGGTTGGTATGGATATAGCCA 58.899 41.667 13.05 13.05 43.23 4.75
5135 7539 5.675538 GAGATGGTTGGTATGGATATAGCC 58.324 45.833 0.00 0.00 36.64 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.