Multiple sequence alignment - TraesCS3B01G112300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G112300 chr3B 100.000 3390 0 0 3499 6888 78548336 78544947 0.000000e+00 6261.0
1 TraesCS3B01G112300 chr3B 100.000 3380 0 0 1 3380 78551834 78548455 0.000000e+00 6242.0
2 TraesCS3B01G112300 chr3B 99.345 1068 7 0 2313 3380 748456315 748457382 0.000000e+00 1934.0
3 TraesCS3B01G112300 chr3A 93.974 3402 155 26 3520 6886 61447617 61444231 0.000000e+00 5101.0
4 TraesCS3B01G112300 chr3A 92.718 1744 79 19 597 2316 61449322 61447603 0.000000e+00 2473.0
5 TraesCS3B01G112300 chr3A 88.350 103 11 1 1 103 645627644 645627543 9.380000e-24 122.0
6 TraesCS3B01G112300 chr3D 94.570 1731 70 15 5166 6886 48959636 48957920 0.000000e+00 2654.0
7 TraesCS3B01G112300 chr3D 92.882 1756 75 25 596 2316 48963062 48961322 0.000000e+00 2505.0
8 TraesCS3B01G112300 chr3D 91.726 1680 88 22 3520 5161 48961336 48959670 0.000000e+00 2285.0
9 TraesCS3B01G112300 chr3D 81.388 317 52 5 281 595 233474207 233473896 1.150000e-62 252.0
10 TraesCS3B01G112300 chr7B 99.440 1072 6 0 2309 3380 744908617 744907546 0.000000e+00 1947.0
11 TraesCS3B01G112300 chr4B 99.532 1069 5 0 2312 3380 661203956 661205024 0.000000e+00 1947.0
12 TraesCS3B01G112300 chr4B 96.449 1070 37 1 2312 3380 188174794 188173725 0.000000e+00 1764.0
13 TraesCS3B01G112300 chr6B 99.439 1069 6 0 2312 3380 527576874 527577942 0.000000e+00 1941.0
14 TraesCS3B01G112300 chr6B 82.090 335 48 12 270 596 591185382 591185052 6.810000e-70 276.0
15 TraesCS3B01G112300 chr5B 99.245 1059 8 0 2314 3372 337156589 337155531 0.000000e+00 1912.0
16 TraesCS3B01G112300 chr5B 85.455 110 16 0 1 110 516673291 516673182 1.570000e-21 115.0
17 TraesCS3B01G112300 chr5B 85.455 110 16 0 1 110 516677153 516677044 1.570000e-21 115.0
18 TraesCS3B01G112300 chr5B 85.455 110 16 0 1 110 516680159 516680050 1.570000e-21 115.0
19 TraesCS3B01G112300 chr5B 81.818 110 20 0 1 110 493632650 493632541 7.360000e-15 93.5
20 TraesCS3B01G112300 chr2B 99.245 1059 8 0 2314 3372 359626416 359625358 0.000000e+00 1912.0
21 TraesCS3B01G112300 chr1B 98.475 1049 16 0 2313 3361 328651101 328652149 0.000000e+00 1849.0
22 TraesCS3B01G112300 chrUn 99.203 1004 8 0 2313 3316 449434577 449433574 0.000000e+00 1810.0
23 TraesCS3B01G112300 chr7D 85.437 103 15 0 8 110 27508780 27508882 2.630000e-19 108.0
24 TraesCS3B01G112300 chr7A 88.333 60 7 0 50 109 732731440 732731381 9.580000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G112300 chr3B 78544947 78551834 6887 True 6251.500000 6261 100.000000 1 6888 2 chr3B.!!$R1 6887
1 TraesCS3B01G112300 chr3B 748456315 748457382 1067 False 1934.000000 1934 99.345000 2313 3380 1 chr3B.!!$F1 1067
2 TraesCS3B01G112300 chr3A 61444231 61449322 5091 True 3787.000000 5101 93.346000 597 6886 2 chr3A.!!$R2 6289
3 TraesCS3B01G112300 chr3D 48957920 48963062 5142 True 2481.333333 2654 93.059333 596 6886 3 chr3D.!!$R2 6290
4 TraesCS3B01G112300 chr7B 744907546 744908617 1071 True 1947.000000 1947 99.440000 2309 3380 1 chr7B.!!$R1 1071
5 TraesCS3B01G112300 chr4B 661203956 661205024 1068 False 1947.000000 1947 99.532000 2312 3380 1 chr4B.!!$F1 1068
6 TraesCS3B01G112300 chr4B 188173725 188174794 1069 True 1764.000000 1764 96.449000 2312 3380 1 chr4B.!!$R1 1068
7 TraesCS3B01G112300 chr6B 527576874 527577942 1068 False 1941.000000 1941 99.439000 2312 3380 1 chr6B.!!$F1 1068
8 TraesCS3B01G112300 chr5B 337155531 337156589 1058 True 1912.000000 1912 99.245000 2314 3372 1 chr5B.!!$R1 1058
9 TraesCS3B01G112300 chr2B 359625358 359626416 1058 True 1912.000000 1912 99.245000 2314 3372 1 chr2B.!!$R1 1058
10 TraesCS3B01G112300 chr1B 328651101 328652149 1048 False 1849.000000 1849 98.475000 2313 3361 1 chr1B.!!$F1 1048
11 TraesCS3B01G112300 chrUn 449433574 449434577 1003 True 1810.000000 1810 99.203000 2313 3316 1 chrUn.!!$R1 1003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 466 0.038599 TAGTCAGCGGTCCAGTGGTA 59.961 55.0 9.54 0.0 0.0 3.25 F
568 569 0.106708 AATGACTGTCTGCACCACGT 59.893 50.0 9.51 0.0 0.0 4.49 F
569 570 0.106708 ATGACTGTCTGCACCACGTT 59.893 50.0 9.51 0.0 0.0 3.99 F
571 572 0.249489 GACTGTCTGCACCACGTTCT 60.249 55.0 0.00 0.0 0.0 3.01 F
849 859 0.252375 AATCCAGCAGCCCAACCAAT 60.252 50.0 0.00 0.0 0.0 3.16 F
1897 1938 0.621609 CGGGGTAGGGGAATTTGACA 59.378 55.0 0.00 0.0 0.0 3.58 F
2045 2086 0.736053 GTGGTGCTTTGTCGTTTGGA 59.264 50.0 0.00 0.0 0.0 3.53 F
3631 3689 0.721718 CAGGAAAGAATGGCGTCGTC 59.278 55.0 0.00 0.0 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1412 1444 0.175989 GCCGAGGAAGGAGTAGTTGG 59.824 60.000 0.00 0.00 0.00 3.77 R
2021 2062 0.249911 ACGACAAAGCACCACCTCTC 60.250 55.000 0.00 0.00 0.00 3.20 R
2441 2498 3.115892 TCGATCCGGCGTTGTTGC 61.116 61.111 6.01 0.00 0.00 4.17 R
2589 2646 1.964933 CGGGAGAAATCCTAGGACTCC 59.035 57.143 27.82 27.82 44.21 3.85 R
3498 3556 5.627499 TGAAGATTCAGAACGGGAAATTG 57.373 39.130 0.00 0.00 32.50 2.32 R
3611 3669 0.034896 ACGACGCCATTCTTTCCTGT 59.965 50.000 0.00 0.00 0.00 4.00 R
4474 4568 0.553819 AGAGCGAGATGGAGTAGGGT 59.446 55.000 0.00 0.00 0.00 4.34 R
6184 6330 0.320374 CTTCTGGTTGACCCTGCGTA 59.680 55.000 0.00 0.00 34.29 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.574516 AACTTGTGTCCTATATTCAAGAACTTT 57.425 29.630 9.63 0.00 38.82 2.66
85 86 9.304335 AGCCATGATTGAATATTCATATGAACA 57.696 29.630 20.19 9.81 37.00 3.18
118 119 9.846248 AATTTTAATTATGAATATGAGAGCGCC 57.154 29.630 2.29 0.00 0.00 6.53
119 120 6.647212 TTAATTATGAATATGAGAGCGCCG 57.353 37.500 2.29 0.00 0.00 6.46
120 121 3.660501 TTATGAATATGAGAGCGCCGT 57.339 42.857 2.29 0.00 0.00 5.68
121 122 2.071688 ATGAATATGAGAGCGCCGTC 57.928 50.000 2.29 0.67 0.00 4.79
122 123 0.317854 TGAATATGAGAGCGCCGTCG 60.318 55.000 2.29 0.00 39.07 5.12
123 124 0.317938 GAATATGAGAGCGCCGTCGT 60.318 55.000 2.29 5.02 38.14 4.34
124 125 0.102481 AATATGAGAGCGCCGTCGTT 59.898 50.000 2.29 0.00 38.14 3.85
125 126 0.949397 ATATGAGAGCGCCGTCGTTA 59.051 50.000 2.29 0.00 38.14 3.18
126 127 0.734309 TATGAGAGCGCCGTCGTTAA 59.266 50.000 2.29 0.00 38.14 2.01
127 128 0.108992 ATGAGAGCGCCGTCGTTAAA 60.109 50.000 2.29 0.00 38.14 1.52
128 129 1.005294 TGAGAGCGCCGTCGTTAAAC 61.005 55.000 2.29 0.00 38.14 2.01
129 130 0.731855 GAGAGCGCCGTCGTTAAACT 60.732 55.000 2.29 0.00 38.14 2.66
130 131 0.523072 AGAGCGCCGTCGTTAAACTA 59.477 50.000 2.29 0.00 38.14 2.24
131 132 0.912528 GAGCGCCGTCGTTAAACTAG 59.087 55.000 2.29 0.00 38.14 2.57
132 133 0.523072 AGCGCCGTCGTTAAACTAGA 59.477 50.000 2.29 0.00 38.14 2.43
133 134 1.133790 AGCGCCGTCGTTAAACTAGAT 59.866 47.619 2.29 0.00 38.14 1.98
134 135 1.922545 GCGCCGTCGTTAAACTAGATT 59.077 47.619 0.00 0.00 38.14 2.40
135 136 3.108144 GCGCCGTCGTTAAACTAGATTA 58.892 45.455 0.00 0.00 38.14 1.75
136 137 3.179206 GCGCCGTCGTTAAACTAGATTAG 59.821 47.826 0.00 0.00 38.14 1.73
137 138 4.346129 CGCCGTCGTTAAACTAGATTAGT 58.654 43.478 0.00 0.00 41.73 2.24
138 139 6.680666 GCGCCGTCGTTAAACTAGATTAGTT 61.681 44.000 0.00 0.00 43.33 2.24
139 140 8.076377 GCGCCGTCGTTAAACTAGATTAGTTT 62.076 42.308 15.93 15.93 46.91 2.66
140 141 9.443775 GCGCCGTCGTTAAACTAGATTAGTTTT 62.444 40.741 16.63 4.89 45.22 2.43
164 165 4.614555 TTTAGCATCACTACATTTGGCG 57.385 40.909 0.00 0.00 0.00 5.69
165 166 2.401583 AGCATCACTACATTTGGCGA 57.598 45.000 0.00 0.00 0.00 5.54
166 167 2.710377 AGCATCACTACATTTGGCGAA 58.290 42.857 0.00 0.00 0.00 4.70
167 168 2.679837 AGCATCACTACATTTGGCGAAG 59.320 45.455 0.00 0.00 0.00 3.79
168 169 2.420022 GCATCACTACATTTGGCGAAGT 59.580 45.455 0.00 0.00 0.00 3.01
169 170 3.119849 GCATCACTACATTTGGCGAAGTT 60.120 43.478 0.00 0.00 0.00 2.66
170 171 4.094294 GCATCACTACATTTGGCGAAGTTA 59.906 41.667 0.00 0.00 0.00 2.24
171 172 5.220854 GCATCACTACATTTGGCGAAGTTAT 60.221 40.000 0.00 0.00 0.00 1.89
172 173 6.422223 CATCACTACATTTGGCGAAGTTATC 58.578 40.000 0.00 0.00 0.00 1.75
173 174 4.873827 TCACTACATTTGGCGAAGTTATCC 59.126 41.667 0.00 0.00 0.00 2.59
174 175 4.634004 CACTACATTTGGCGAAGTTATCCA 59.366 41.667 0.00 0.00 0.00 3.41
175 176 5.123186 CACTACATTTGGCGAAGTTATCCAA 59.877 40.000 4.64 4.64 38.03 3.53
176 177 4.701956 ACATTTGGCGAAGTTATCCAAG 57.298 40.909 7.96 2.48 40.52 3.61
177 178 4.079253 ACATTTGGCGAAGTTATCCAAGT 58.921 39.130 7.96 3.94 40.52 3.16
178 179 5.250200 ACATTTGGCGAAGTTATCCAAGTA 58.750 37.500 7.96 0.00 40.52 2.24
179 180 5.123344 ACATTTGGCGAAGTTATCCAAGTAC 59.877 40.000 7.96 0.00 40.52 2.73
180 181 3.965379 TGGCGAAGTTATCCAAGTACA 57.035 42.857 0.00 0.00 0.00 2.90
181 182 4.274602 TGGCGAAGTTATCCAAGTACAA 57.725 40.909 0.00 0.00 0.00 2.41
182 183 3.998341 TGGCGAAGTTATCCAAGTACAAC 59.002 43.478 0.00 0.00 0.00 3.32
183 184 3.998341 GGCGAAGTTATCCAAGTACAACA 59.002 43.478 0.00 0.00 0.00 3.33
184 185 4.634443 GGCGAAGTTATCCAAGTACAACAT 59.366 41.667 0.00 0.00 0.00 2.71
185 186 5.447279 GGCGAAGTTATCCAAGTACAACATG 60.447 44.000 0.00 0.00 0.00 3.21
186 187 5.350365 GCGAAGTTATCCAAGTACAACATGA 59.650 40.000 0.00 0.00 0.00 3.07
187 188 6.128391 GCGAAGTTATCCAAGTACAACATGAA 60.128 38.462 0.00 0.00 0.00 2.57
188 189 7.572353 GCGAAGTTATCCAAGTACAACATGAAA 60.572 37.037 0.00 0.00 0.00 2.69
189 190 7.957484 CGAAGTTATCCAAGTACAACATGAAAG 59.043 37.037 0.00 0.00 0.00 2.62
190 191 7.145932 AGTTATCCAAGTACAACATGAAAGC 57.854 36.000 0.00 0.00 0.00 3.51
191 192 4.685169 ATCCAAGTACAACATGAAAGCG 57.315 40.909 0.00 0.00 0.00 4.68
192 193 3.472652 TCCAAGTACAACATGAAAGCGT 58.527 40.909 0.00 0.00 0.00 5.07
193 194 3.880490 TCCAAGTACAACATGAAAGCGTT 59.120 39.130 0.00 0.00 0.00 4.84
194 195 5.057819 TCCAAGTACAACATGAAAGCGTTA 58.942 37.500 0.00 0.00 0.00 3.18
195 196 5.049954 TCCAAGTACAACATGAAAGCGTTAC 60.050 40.000 0.00 0.00 0.00 2.50
196 197 4.640805 AGTACAACATGAAAGCGTTACG 57.359 40.909 0.00 0.00 0.00 3.18
197 198 2.961522 ACAACATGAAAGCGTTACGG 57.038 45.000 6.94 0.00 0.00 4.02
198 199 1.533731 ACAACATGAAAGCGTTACGGG 59.466 47.619 6.94 0.00 0.00 5.28
199 200 1.533731 CAACATGAAAGCGTTACGGGT 59.466 47.619 6.94 0.00 0.00 5.28
200 201 1.153353 ACATGAAAGCGTTACGGGTG 58.847 50.000 6.94 0.00 0.00 4.61
201 202 1.270412 ACATGAAAGCGTTACGGGTGA 60.270 47.619 6.94 0.00 0.00 4.02
202 203 1.801771 CATGAAAGCGTTACGGGTGAA 59.198 47.619 6.94 0.00 0.00 3.18
203 204 1.504359 TGAAAGCGTTACGGGTGAAG 58.496 50.000 6.94 0.00 0.00 3.02
204 205 1.202557 TGAAAGCGTTACGGGTGAAGT 60.203 47.619 6.94 0.00 0.00 3.01
205 206 1.193874 GAAAGCGTTACGGGTGAAGTG 59.806 52.381 6.94 0.00 0.00 3.16
206 207 0.601841 AAGCGTTACGGGTGAAGTGG 60.602 55.000 6.94 0.00 0.00 4.00
207 208 1.005867 GCGTTACGGGTGAAGTGGA 60.006 57.895 6.94 0.00 0.00 4.02
208 209 0.390735 GCGTTACGGGTGAAGTGGAT 60.391 55.000 6.94 0.00 0.00 3.41
209 210 1.135024 GCGTTACGGGTGAAGTGGATA 60.135 52.381 6.94 0.00 0.00 2.59
210 211 2.805845 CGTTACGGGTGAAGTGGATAG 58.194 52.381 0.00 0.00 0.00 2.08
211 212 2.165030 CGTTACGGGTGAAGTGGATAGT 59.835 50.000 0.00 0.00 0.00 2.12
212 213 3.378112 CGTTACGGGTGAAGTGGATAGTA 59.622 47.826 0.00 0.00 0.00 1.82
213 214 4.497006 CGTTACGGGTGAAGTGGATAGTAG 60.497 50.000 0.00 0.00 0.00 2.57
214 215 1.755380 ACGGGTGAAGTGGATAGTAGC 59.245 52.381 0.00 0.00 0.00 3.58
215 216 1.754803 CGGGTGAAGTGGATAGTAGCA 59.245 52.381 0.00 0.00 0.00 3.49
216 217 2.481449 CGGGTGAAGTGGATAGTAGCAC 60.481 54.545 0.00 0.00 0.00 4.40
217 218 2.500098 GGGTGAAGTGGATAGTAGCACA 59.500 50.000 0.00 0.00 0.00 4.57
218 219 3.134804 GGGTGAAGTGGATAGTAGCACAT 59.865 47.826 0.00 0.00 0.00 3.21
219 220 4.384208 GGGTGAAGTGGATAGTAGCACATT 60.384 45.833 0.00 0.00 0.00 2.71
220 221 5.163343 GGGTGAAGTGGATAGTAGCACATTA 60.163 44.000 0.00 0.00 0.00 1.90
221 222 5.753921 GGTGAAGTGGATAGTAGCACATTAC 59.246 44.000 0.00 0.00 0.00 1.89
222 223 5.459107 GTGAAGTGGATAGTAGCACATTACG 59.541 44.000 0.00 0.00 0.00 3.18
223 224 5.126545 TGAAGTGGATAGTAGCACATTACGT 59.873 40.000 0.00 0.00 0.00 3.57
235 236 2.923655 CACATTACGTGCTAGTCACAGG 59.076 50.000 14.77 3.38 45.92 4.00
236 237 2.561419 ACATTACGTGCTAGTCACAGGT 59.439 45.455 14.77 8.22 45.92 4.00
237 238 3.179830 CATTACGTGCTAGTCACAGGTC 58.820 50.000 14.77 0.00 45.92 3.85
238 239 0.800631 TACGTGCTAGTCACAGGTCG 59.199 55.000 14.77 5.70 45.92 4.79
239 240 1.801913 CGTGCTAGTCACAGGTCGC 60.802 63.158 14.77 0.00 45.92 5.19
240 241 1.587054 GTGCTAGTCACAGGTCGCT 59.413 57.895 11.05 0.00 44.98 4.93
241 242 0.734253 GTGCTAGTCACAGGTCGCTG 60.734 60.000 11.05 0.00 44.98 5.18
242 243 1.153745 GCTAGTCACAGGTCGCTGG 60.154 63.158 0.00 0.00 0.00 4.85
243 244 1.878656 GCTAGTCACAGGTCGCTGGT 61.879 60.000 0.00 0.00 0.00 4.00
244 245 0.171455 CTAGTCACAGGTCGCTGGTC 59.829 60.000 0.00 0.00 0.00 4.02
245 246 0.538746 TAGTCACAGGTCGCTGGTCA 60.539 55.000 0.00 0.00 0.00 4.02
246 247 1.664965 GTCACAGGTCGCTGGTCAC 60.665 63.158 0.00 0.00 0.00 3.67
247 248 2.131067 TCACAGGTCGCTGGTCACA 61.131 57.895 0.00 0.00 0.00 3.58
261 262 4.206477 TGGTCACAGAGGACATTATGTG 57.794 45.455 1.24 0.00 43.44 3.21
262 263 3.582647 TGGTCACAGAGGACATTATGTGT 59.417 43.478 1.24 0.00 45.83 3.72
263 264 4.041567 TGGTCACAGAGGACATTATGTGTT 59.958 41.667 1.24 0.00 42.36 3.32
264 265 5.247337 TGGTCACAGAGGACATTATGTGTTA 59.753 40.000 1.24 0.00 42.36 2.41
265 266 5.812642 GGTCACAGAGGACATTATGTGTTAG 59.187 44.000 1.24 0.00 42.36 2.34
266 267 6.398918 GTCACAGAGGACATTATGTGTTAGT 58.601 40.000 1.24 0.00 42.36 2.24
267 268 6.531948 GTCACAGAGGACATTATGTGTTAGTC 59.468 42.308 1.24 0.00 42.36 2.59
268 269 6.210584 TCACAGAGGACATTATGTGTTAGTCA 59.789 38.462 1.24 0.00 42.36 3.41
269 270 6.311445 CACAGAGGACATTATGTGTTAGTCAC 59.689 42.308 1.24 0.00 42.36 3.67
281 282 5.424121 GTGTTAGTCACAGAGCACATTTT 57.576 39.130 0.00 0.00 45.51 1.82
282 283 5.821204 GTGTTAGTCACAGAGCACATTTTT 58.179 37.500 0.00 0.00 45.51 1.94
283 284 6.954944 GTGTTAGTCACAGAGCACATTTTTA 58.045 36.000 0.00 0.00 45.51 1.52
284 285 7.072030 GTGTTAGTCACAGAGCACATTTTTAG 58.928 38.462 0.00 0.00 45.51 1.85
285 286 6.765989 TGTTAGTCACAGAGCACATTTTTAGT 59.234 34.615 0.00 0.00 0.00 2.24
286 287 7.929245 TGTTAGTCACAGAGCACATTTTTAGTA 59.071 33.333 0.00 0.00 0.00 1.82
287 288 8.936864 GTTAGTCACAGAGCACATTTTTAGTAT 58.063 33.333 0.00 0.00 0.00 2.12
288 289 7.986085 AGTCACAGAGCACATTTTTAGTATT 57.014 32.000 0.00 0.00 0.00 1.89
290 291 9.672673 AGTCACAGAGCACATTTTTAGTATTAT 57.327 29.630 0.00 0.00 0.00 1.28
316 317 7.481275 TTTTCAGAAAAATTGAAGATGCCAC 57.519 32.000 5.81 0.00 36.07 5.01
317 318 5.138125 TCAGAAAAATTGAAGATGCCACC 57.862 39.130 0.00 0.00 0.00 4.61
318 319 4.834496 TCAGAAAAATTGAAGATGCCACCT 59.166 37.500 0.00 0.00 0.00 4.00
319 320 5.047802 TCAGAAAAATTGAAGATGCCACCTC 60.048 40.000 0.00 0.00 0.00 3.85
320 321 4.834496 AGAAAAATTGAAGATGCCACCTCA 59.166 37.500 0.00 0.00 0.00 3.86
321 322 4.525912 AAAATTGAAGATGCCACCTCAC 57.474 40.909 0.00 0.00 0.00 3.51
322 323 2.134789 ATTGAAGATGCCACCTCACC 57.865 50.000 0.00 0.00 0.00 4.02
323 324 0.770499 TTGAAGATGCCACCTCACCA 59.230 50.000 0.00 0.00 0.00 4.17
324 325 0.770499 TGAAGATGCCACCTCACCAA 59.230 50.000 0.00 0.00 0.00 3.67
325 326 1.355381 TGAAGATGCCACCTCACCAAT 59.645 47.619 0.00 0.00 0.00 3.16
326 327 2.575735 TGAAGATGCCACCTCACCAATA 59.424 45.455 0.00 0.00 0.00 1.90
327 328 3.010027 TGAAGATGCCACCTCACCAATAA 59.990 43.478 0.00 0.00 0.00 1.40
328 329 3.004752 AGATGCCACCTCACCAATAAC 57.995 47.619 0.00 0.00 0.00 1.89
329 330 2.308570 AGATGCCACCTCACCAATAACA 59.691 45.455 0.00 0.00 0.00 2.41
330 331 2.666272 TGCCACCTCACCAATAACAA 57.334 45.000 0.00 0.00 0.00 2.83
331 332 2.235016 TGCCACCTCACCAATAACAAC 58.765 47.619 0.00 0.00 0.00 3.32
332 333 2.235016 GCCACCTCACCAATAACAACA 58.765 47.619 0.00 0.00 0.00 3.33
333 334 2.228822 GCCACCTCACCAATAACAACAG 59.771 50.000 0.00 0.00 0.00 3.16
334 335 2.819608 CCACCTCACCAATAACAACAGG 59.180 50.000 0.00 0.00 0.00 4.00
335 336 2.819608 CACCTCACCAATAACAACAGGG 59.180 50.000 0.00 0.00 0.00 4.45
336 337 2.445525 ACCTCACCAATAACAACAGGGT 59.554 45.455 0.00 0.00 0.00 4.34
337 338 3.117284 ACCTCACCAATAACAACAGGGTT 60.117 43.478 0.00 0.00 34.81 4.11
338 339 3.895041 CCTCACCAATAACAACAGGGTTT 59.105 43.478 0.00 0.00 32.29 3.27
339 340 4.343814 CCTCACCAATAACAACAGGGTTTT 59.656 41.667 0.00 0.00 32.29 2.43
340 341 5.163353 CCTCACCAATAACAACAGGGTTTTT 60.163 40.000 0.00 0.00 32.29 1.94
376 377 8.628630 AAAAATTGAGGTGGTTTTCAGAAAAA 57.371 26.923 10.00 0.00 31.13 1.94
393 394 3.184736 AAAAACTGGCCACACTCGT 57.815 47.368 0.00 0.00 0.00 4.18
394 395 1.021968 AAAAACTGGCCACACTCGTC 58.978 50.000 0.00 0.00 0.00 4.20
395 396 0.818040 AAAACTGGCCACACTCGTCC 60.818 55.000 0.00 0.00 0.00 4.79
396 397 1.696097 AAACTGGCCACACTCGTCCT 61.696 55.000 0.00 0.00 0.00 3.85
397 398 2.100879 AACTGGCCACACTCGTCCTC 62.101 60.000 0.00 0.00 0.00 3.71
398 399 2.203640 TGGCCACACTCGTCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
399 400 2.219325 CTGGCCACACTCGTCCTCTC 62.219 65.000 0.00 0.00 0.00 3.20
400 401 1.979693 GGCCACACTCGTCCTCTCT 60.980 63.158 0.00 0.00 0.00 3.10
401 402 1.536943 GGCCACACTCGTCCTCTCTT 61.537 60.000 0.00 0.00 0.00 2.85
402 403 0.109039 GCCACACTCGTCCTCTCTTC 60.109 60.000 0.00 0.00 0.00 2.87
403 404 0.528470 CCACACTCGTCCTCTCTTCC 59.472 60.000 0.00 0.00 0.00 3.46
404 405 0.528470 CACACTCGTCCTCTCTTCCC 59.472 60.000 0.00 0.00 0.00 3.97
405 406 0.406361 ACACTCGTCCTCTCTTCCCT 59.594 55.000 0.00 0.00 0.00 4.20
406 407 1.099689 CACTCGTCCTCTCTTCCCTC 58.900 60.000 0.00 0.00 0.00 4.30
407 408 0.393267 ACTCGTCCTCTCTTCCCTCG 60.393 60.000 0.00 0.00 0.00 4.63
408 409 0.393267 CTCGTCCTCTCTTCCCTCGT 60.393 60.000 0.00 0.00 0.00 4.18
409 410 0.677098 TCGTCCTCTCTTCCCTCGTG 60.677 60.000 0.00 0.00 0.00 4.35
410 411 0.961358 CGTCCTCTCTTCCCTCGTGT 60.961 60.000 0.00 0.00 0.00 4.49
411 412 0.812549 GTCCTCTCTTCCCTCGTGTC 59.187 60.000 0.00 0.00 0.00 3.67
412 413 0.404426 TCCTCTCTTCCCTCGTGTCA 59.596 55.000 0.00 0.00 0.00 3.58
413 414 0.528470 CCTCTCTTCCCTCGTGTCAC 59.472 60.000 0.00 0.00 0.00 3.67
414 415 1.540267 CTCTCTTCCCTCGTGTCACT 58.460 55.000 0.65 0.00 0.00 3.41
415 416 1.201181 CTCTCTTCCCTCGTGTCACTG 59.799 57.143 0.65 0.00 0.00 3.66
416 417 1.202891 TCTCTTCCCTCGTGTCACTGA 60.203 52.381 0.65 0.00 0.00 3.41
417 418 1.821753 CTCTTCCCTCGTGTCACTGAT 59.178 52.381 0.65 0.00 0.00 2.90
418 419 3.017442 CTCTTCCCTCGTGTCACTGATA 58.983 50.000 0.65 0.00 0.00 2.15
419 420 3.017442 TCTTCCCTCGTGTCACTGATAG 58.983 50.000 0.65 0.00 0.00 2.08
420 421 1.763968 TCCCTCGTGTCACTGATAGG 58.236 55.000 0.65 2.97 0.00 2.57
421 422 0.747255 CCCTCGTGTCACTGATAGGG 59.253 60.000 12.48 12.48 37.90 3.53
422 423 0.103208 CCTCGTGTCACTGATAGGGC 59.897 60.000 0.65 0.00 0.00 5.19
423 424 0.248661 CTCGTGTCACTGATAGGGCG 60.249 60.000 0.65 0.00 0.00 6.13
424 425 1.878522 CGTGTCACTGATAGGGCGC 60.879 63.158 0.00 0.00 0.00 6.53
425 426 1.521681 GTGTCACTGATAGGGCGCC 60.522 63.158 21.18 21.18 0.00 6.53
426 427 2.109181 GTCACTGATAGGGCGCCC 59.891 66.667 39.29 39.29 0.00 6.13
427 428 3.161450 TCACTGATAGGGCGCCCC 61.161 66.667 41.72 26.88 45.90 5.80
448 449 2.898840 CCACGCTGGCATGCCTAG 60.899 66.667 35.53 28.86 36.94 3.02
449 450 2.124983 CACGCTGGCATGCCTAGT 60.125 61.111 35.53 27.39 36.94 2.57
450 451 2.176273 CACGCTGGCATGCCTAGTC 61.176 63.158 35.53 22.55 36.94 2.59
451 452 2.187685 CGCTGGCATGCCTAGTCA 59.812 61.111 35.53 15.74 36.94 3.41
452 453 1.886313 CGCTGGCATGCCTAGTCAG 60.886 63.158 35.53 24.86 36.94 3.51
453 454 2.185494 GCTGGCATGCCTAGTCAGC 61.185 63.158 35.53 29.85 42.89 4.26
454 455 1.886313 CTGGCATGCCTAGTCAGCG 60.886 63.158 35.53 11.04 36.94 5.18
455 456 2.590007 GGCATGCCTAGTCAGCGG 60.590 66.667 29.98 0.00 0.00 5.52
456 457 2.187946 GCATGCCTAGTCAGCGGT 59.812 61.111 6.36 0.00 0.00 5.68
457 458 1.884926 GCATGCCTAGTCAGCGGTC 60.885 63.158 6.36 0.00 0.00 4.79
458 459 1.227380 CATGCCTAGTCAGCGGTCC 60.227 63.158 0.00 0.00 0.00 4.46
459 460 1.685765 ATGCCTAGTCAGCGGTCCA 60.686 57.895 0.00 0.00 0.00 4.02
460 461 1.680522 ATGCCTAGTCAGCGGTCCAG 61.681 60.000 0.00 0.00 0.00 3.86
461 462 2.352032 GCCTAGTCAGCGGTCCAGT 61.352 63.158 0.00 0.00 0.00 4.00
462 463 1.513158 CCTAGTCAGCGGTCCAGTG 59.487 63.158 0.00 0.00 0.00 3.66
463 464 1.513158 CTAGTCAGCGGTCCAGTGG 59.487 63.158 1.40 1.40 0.00 4.00
464 465 1.228769 TAGTCAGCGGTCCAGTGGT 60.229 57.895 9.54 0.00 0.00 4.16
465 466 0.038599 TAGTCAGCGGTCCAGTGGTA 59.961 55.000 9.54 0.00 0.00 3.25
466 467 0.614979 AGTCAGCGGTCCAGTGGTAT 60.615 55.000 9.54 0.00 0.00 2.73
467 468 1.108776 GTCAGCGGTCCAGTGGTATA 58.891 55.000 9.54 0.00 0.00 1.47
468 469 1.479323 GTCAGCGGTCCAGTGGTATAA 59.521 52.381 9.54 0.00 0.00 0.98
469 470 2.093869 GTCAGCGGTCCAGTGGTATAAA 60.094 50.000 9.54 0.00 0.00 1.40
470 471 2.568062 TCAGCGGTCCAGTGGTATAAAA 59.432 45.455 9.54 0.00 0.00 1.52
471 472 3.199071 TCAGCGGTCCAGTGGTATAAAAT 59.801 43.478 9.54 0.00 0.00 1.82
472 473 3.560068 CAGCGGTCCAGTGGTATAAAATC 59.440 47.826 9.54 0.00 0.00 2.17
473 474 3.199071 AGCGGTCCAGTGGTATAAAATCA 59.801 43.478 9.54 0.00 0.00 2.57
474 475 3.942748 GCGGTCCAGTGGTATAAAATCAA 59.057 43.478 9.54 0.00 0.00 2.57
475 476 4.035208 GCGGTCCAGTGGTATAAAATCAAG 59.965 45.833 9.54 0.00 0.00 3.02
476 477 5.424757 CGGTCCAGTGGTATAAAATCAAGA 58.575 41.667 9.54 0.00 0.00 3.02
477 478 6.055588 CGGTCCAGTGGTATAAAATCAAGAT 58.944 40.000 9.54 0.00 0.00 2.40
478 479 6.542370 CGGTCCAGTGGTATAAAATCAAGATT 59.458 38.462 9.54 0.00 0.00 2.40
479 480 7.067008 CGGTCCAGTGGTATAAAATCAAGATTT 59.933 37.037 9.54 2.31 42.35 2.17
480 481 8.190784 GGTCCAGTGGTATAAAATCAAGATTTG 58.809 37.037 9.54 0.00 40.57 2.32
481 482 7.702348 GTCCAGTGGTATAAAATCAAGATTTGC 59.298 37.037 9.54 1.43 40.57 3.68
482 483 7.395772 TCCAGTGGTATAAAATCAAGATTTGCA 59.604 33.333 9.54 1.58 40.57 4.08
483 484 7.489113 CCAGTGGTATAAAATCAAGATTTGCAC 59.511 37.037 8.66 7.16 40.57 4.57
484 485 8.246180 CAGTGGTATAAAATCAAGATTTGCACT 58.754 33.333 8.66 0.00 40.57 4.40
485 486 8.246180 AGTGGTATAAAATCAAGATTTGCACTG 58.754 33.333 8.66 0.00 40.57 3.66
486 487 8.028938 GTGGTATAAAATCAAGATTTGCACTGT 58.971 33.333 8.66 0.00 40.57 3.55
487 488 9.237187 TGGTATAAAATCAAGATTTGCACTGTA 57.763 29.630 8.66 0.00 40.57 2.74
492 493 6.956299 AATCAAGATTTGCACTGTATTTGC 57.044 33.333 0.00 0.00 40.63 3.68
497 498 2.627791 TGCACTGTATTTGCACGCT 58.372 47.368 0.00 0.00 45.06 5.07
498 499 0.950836 TGCACTGTATTTGCACGCTT 59.049 45.000 0.00 0.00 45.06 4.68
499 500 1.330306 GCACTGTATTTGCACGCTTG 58.670 50.000 0.00 0.00 39.93 4.01
500 501 1.334960 GCACTGTATTTGCACGCTTGT 60.335 47.619 0.00 0.00 39.93 3.16
501 502 2.309693 CACTGTATTTGCACGCTTGTG 58.690 47.619 0.00 0.00 46.67 3.33
512 513 3.976468 CACGCTTGTGCCAAATTATTG 57.024 42.857 0.00 0.00 36.68 1.90
513 514 2.092524 CACGCTTGTGCCAAATTATTGC 59.907 45.455 0.00 0.00 36.68 3.56
514 515 2.288702 ACGCTTGTGCCAAATTATTGCA 60.289 40.909 0.00 0.00 35.10 4.08
515 516 2.092524 CGCTTGTGCCAAATTATTGCAC 59.907 45.455 15.96 15.96 40.67 4.57
516 517 2.416202 GCTTGTGCCAAATTATTGCACC 59.584 45.455 18.58 5.61 40.11 5.01
517 518 3.661944 CTTGTGCCAAATTATTGCACCA 58.338 40.909 18.58 10.67 40.11 4.17
518 519 3.316071 TGTGCCAAATTATTGCACCAG 57.684 42.857 18.58 0.00 40.11 4.00
519 520 2.632028 TGTGCCAAATTATTGCACCAGT 59.368 40.909 18.58 0.00 40.11 4.00
520 521 3.070734 TGTGCCAAATTATTGCACCAGTT 59.929 39.130 18.58 0.00 40.11 3.16
521 522 3.679502 GTGCCAAATTATTGCACCAGTTC 59.320 43.478 13.18 0.00 37.48 3.01
522 523 3.323115 TGCCAAATTATTGCACCAGTTCA 59.677 39.130 0.00 0.00 35.10 3.18
523 524 4.202295 TGCCAAATTATTGCACCAGTTCAA 60.202 37.500 0.00 0.00 35.10 2.69
524 525 4.937015 GCCAAATTATTGCACCAGTTCAAT 59.063 37.500 1.47 1.47 36.87 2.57
525 526 6.105333 GCCAAATTATTGCACCAGTTCAATA 58.895 36.000 0.00 0.00 34.95 1.90
526 527 6.762661 GCCAAATTATTGCACCAGTTCAATAT 59.237 34.615 4.15 0.00 35.74 1.28
527 528 7.925483 GCCAAATTATTGCACCAGTTCAATATA 59.075 33.333 4.15 0.00 35.74 0.86
528 529 9.985730 CCAAATTATTGCACCAGTTCAATATAT 57.014 29.630 4.15 0.35 35.74 0.86
532 533 8.744568 TTATTGCACCAGTTCAATATATGTCA 57.255 30.769 4.15 0.00 35.74 3.58
533 534 6.435430 TTGCACCAGTTCAATATATGTCAC 57.565 37.500 0.00 0.00 0.00 3.67
534 535 5.495640 TGCACCAGTTCAATATATGTCACA 58.504 37.500 0.00 0.00 0.00 3.58
535 536 5.942826 TGCACCAGTTCAATATATGTCACAA 59.057 36.000 0.00 0.00 0.00 3.33
536 537 6.128035 TGCACCAGTTCAATATATGTCACAAC 60.128 38.462 0.00 0.00 0.00 3.32
537 538 6.094048 GCACCAGTTCAATATATGTCACAACT 59.906 38.462 0.00 0.00 0.00 3.16
538 539 7.362056 GCACCAGTTCAATATATGTCACAACTT 60.362 37.037 0.00 0.00 0.00 2.66
539 540 8.177663 CACCAGTTCAATATATGTCACAACTTC 58.822 37.037 0.00 0.00 0.00 3.01
540 541 8.103305 ACCAGTTCAATATATGTCACAACTTCT 58.897 33.333 0.00 0.00 0.00 2.85
541 542 9.599866 CCAGTTCAATATATGTCACAACTTCTA 57.400 33.333 0.00 0.00 0.00 2.10
543 544 9.319143 AGTTCAATATATGTCACAACTTCTAGC 57.681 33.333 0.00 0.00 0.00 3.42
544 545 9.098355 GTTCAATATATGTCACAACTTCTAGCA 57.902 33.333 0.00 0.00 0.00 3.49
545 546 9.836864 TTCAATATATGTCACAACTTCTAGCAT 57.163 29.630 0.00 0.00 0.00 3.79
546 547 9.836864 TCAATATATGTCACAACTTCTAGCATT 57.163 29.630 0.00 0.00 0.00 3.56
553 554 8.389779 TGTCACAACTTCTAGCATTAAAATGA 57.610 30.769 6.87 0.00 38.70 2.57
554 555 8.289618 TGTCACAACTTCTAGCATTAAAATGAC 58.710 33.333 6.87 0.00 38.70 3.06
555 556 8.507249 GTCACAACTTCTAGCATTAAAATGACT 58.493 33.333 6.87 6.01 38.70 3.41
556 557 8.506437 TCACAACTTCTAGCATTAAAATGACTG 58.494 33.333 6.87 0.00 38.70 3.51
557 558 8.292448 CACAACTTCTAGCATTAAAATGACTGT 58.708 33.333 6.87 0.00 38.70 3.55
558 559 8.507249 ACAACTTCTAGCATTAAAATGACTGTC 58.493 33.333 6.87 0.00 38.70 3.51
559 560 8.725148 CAACTTCTAGCATTAAAATGACTGTCT 58.275 33.333 9.51 0.00 38.70 3.41
560 561 8.261492 ACTTCTAGCATTAAAATGACTGTCTG 57.739 34.615 9.51 0.00 38.70 3.51
561 562 6.668541 TCTAGCATTAAAATGACTGTCTGC 57.331 37.500 9.51 8.42 38.70 4.26
562 563 6.172630 TCTAGCATTAAAATGACTGTCTGCA 58.827 36.000 15.34 0.00 38.70 4.41
563 564 5.051891 AGCATTAAAATGACTGTCTGCAC 57.948 39.130 15.34 0.00 38.70 4.57
564 565 4.082571 AGCATTAAAATGACTGTCTGCACC 60.083 41.667 15.34 0.00 38.70 5.01
565 566 4.321156 GCATTAAAATGACTGTCTGCACCA 60.321 41.667 9.51 0.00 38.70 4.17
566 567 4.829064 TTAAAATGACTGTCTGCACCAC 57.171 40.909 9.51 0.00 0.00 4.16
567 568 1.229428 AAATGACTGTCTGCACCACG 58.771 50.000 9.51 0.00 0.00 4.94
568 569 0.106708 AATGACTGTCTGCACCACGT 59.893 50.000 9.51 0.00 0.00 4.49
569 570 0.106708 ATGACTGTCTGCACCACGTT 59.893 50.000 9.51 0.00 0.00 3.99
570 571 0.529773 TGACTGTCTGCACCACGTTC 60.530 55.000 9.51 0.00 0.00 3.95
571 572 0.249489 GACTGTCTGCACCACGTTCT 60.249 55.000 0.00 0.00 0.00 3.01
572 573 1.000607 GACTGTCTGCACCACGTTCTA 60.001 52.381 0.00 0.00 0.00 2.10
573 574 1.000163 ACTGTCTGCACCACGTTCTAG 60.000 52.381 0.00 0.00 0.00 2.43
574 575 0.319555 TGTCTGCACCACGTTCTAGC 60.320 55.000 0.00 0.00 0.00 3.42
575 576 0.319555 GTCTGCACCACGTTCTAGCA 60.320 55.000 0.00 0.00 0.00 3.49
576 577 0.608130 TCTGCACCACGTTCTAGCAT 59.392 50.000 2.71 0.00 34.35 3.79
577 578 1.002366 CTGCACCACGTTCTAGCATC 58.998 55.000 2.71 0.00 34.35 3.91
578 579 0.320050 TGCACCACGTTCTAGCATCA 59.680 50.000 0.00 0.00 0.00 3.07
579 580 1.066215 TGCACCACGTTCTAGCATCAT 60.066 47.619 0.00 0.00 0.00 2.45
580 581 1.594862 GCACCACGTTCTAGCATCATC 59.405 52.381 0.00 0.00 0.00 2.92
581 582 2.892374 CACCACGTTCTAGCATCATCA 58.108 47.619 0.00 0.00 0.00 3.07
582 583 3.261580 CACCACGTTCTAGCATCATCAA 58.738 45.455 0.00 0.00 0.00 2.57
583 584 3.873361 CACCACGTTCTAGCATCATCAAT 59.127 43.478 0.00 0.00 0.00 2.57
584 585 3.873361 ACCACGTTCTAGCATCATCAATG 59.127 43.478 0.00 0.00 38.50 2.82
585 586 3.873361 CCACGTTCTAGCATCATCAATGT 59.127 43.478 0.00 0.00 37.71 2.71
586 587 5.049828 CCACGTTCTAGCATCATCAATGTA 58.950 41.667 0.00 0.00 37.71 2.29
587 588 5.523552 CCACGTTCTAGCATCATCAATGTAA 59.476 40.000 0.00 0.00 37.71 2.41
588 589 6.203530 CCACGTTCTAGCATCATCAATGTAAT 59.796 38.462 0.00 0.00 37.71 1.89
589 590 7.254898 CCACGTTCTAGCATCATCAATGTAATT 60.255 37.037 0.00 0.00 37.71 1.40
677 678 1.298859 GCTTTCGTTCTGGTCGGCAT 61.299 55.000 0.00 0.00 0.00 4.40
687 688 4.096558 GTCGGCATGGCGCGAAAA 62.097 61.111 34.34 16.15 43.84 2.29
694 695 0.518355 CATGGCGCGAAAACACGTAG 60.518 55.000 12.10 0.00 35.59 3.51
722 723 2.751837 CTTTCTTGCCCGCCTCCC 60.752 66.667 0.00 0.00 0.00 4.30
793 794 2.026014 CACGCCTTGTGTTGCACC 59.974 61.111 0.00 0.00 43.88 5.01
795 796 2.186826 ACGCCTTGTGTTGCACCTC 61.187 57.895 0.00 0.00 32.73 3.85
796 797 2.186160 CGCCTTGTGTTGCACCTCA 61.186 57.895 0.00 0.00 32.73 3.86
799 808 0.466189 CCTTGTGTTGCACCTCACCT 60.466 55.000 11.57 0.00 32.73 4.00
809 818 1.154454 ACCTCACCTACGTGTCCCA 59.846 57.895 0.00 0.00 41.09 4.37
849 859 0.252375 AATCCAGCAGCCCAACCAAT 60.252 50.000 0.00 0.00 0.00 3.16
924 934 5.048852 CCACCTTTTGGGCAAATTTACATTG 60.049 40.000 0.00 0.00 46.08 2.82
982 992 3.886550 CTCAGCCCAAACCCACCCC 62.887 68.421 0.00 0.00 0.00 4.95
998 1008 3.865241 CCCCCACCTACCTACCTAG 57.135 63.158 0.00 0.00 0.00 3.02
999 1009 0.939698 CCCCCACCTACCTACCTAGT 59.060 60.000 0.00 0.00 0.00 2.57
1008 1018 5.649831 CACCTACCTACCTAGTCGTAAGTTT 59.350 44.000 0.00 0.00 39.48 2.66
1017 1027 0.788391 GTCGTAAGTTTCCACCGCAG 59.212 55.000 0.00 0.00 39.48 5.18
1019 1029 1.495951 GTAAGTTTCCACCGCAGCG 59.504 57.895 8.18 8.18 0.00 5.18
1242 1274 4.699522 AACGGCTTCGGCACCTCC 62.700 66.667 0.00 0.00 43.96 4.30
1339 1371 2.989253 TCTGCTTCGCCGAGGTCA 60.989 61.111 0.00 0.00 0.00 4.02
1853 1894 9.749490 TTTTACTAATCATTCATTCGTTCGTTC 57.251 29.630 0.00 0.00 0.00 3.95
1854 1895 6.021055 ACTAATCATTCATTCGTTCGTTCG 57.979 37.500 0.00 0.00 0.00 3.95
1855 1896 4.921470 AATCATTCATTCGTTCGTTCGT 57.079 36.364 2.67 0.00 0.00 3.85
1897 1938 0.621609 CGGGGTAGGGGAATTTGACA 59.378 55.000 0.00 0.00 0.00 3.58
1972 2013 9.033481 CACAAAATTTTGACTATTTTCAGCTCA 57.967 29.630 32.20 0.00 40.55 4.26
1979 2020 5.748402 TGACTATTTTCAGCTCATGGTCAT 58.252 37.500 6.75 0.00 34.53 3.06
1980 2021 5.819379 TGACTATTTTCAGCTCATGGTCATC 59.181 40.000 6.75 0.00 34.53 2.92
1981 2022 5.999044 ACTATTTTCAGCTCATGGTCATCT 58.001 37.500 0.00 0.00 0.00 2.90
2021 2062 1.273327 GACTGAAATGCCCAAACCCAG 59.727 52.381 0.00 0.00 0.00 4.45
2045 2086 0.736053 GTGGTGCTTTGTCGTTTGGA 59.264 50.000 0.00 0.00 0.00 3.53
2173 2222 8.424274 AAATAACTTTCACTTGAAGCTTTTGG 57.576 30.769 0.00 0.00 35.21 3.28
2190 2239 4.301072 TTTGGTTAGGTTATGCAGAGCT 57.699 40.909 9.21 9.21 0.00 4.09
2214 2271 7.806487 GCTGGAAATAAAACCTACAGTACAAAC 59.194 37.037 0.00 0.00 0.00 2.93
3520 3578 5.627499 CAATTTCCCGTTCTGAATCTTCA 57.373 39.130 0.00 0.00 35.57 3.02
3521 3579 6.199937 CAATTTCCCGTTCTGAATCTTCAT 57.800 37.500 0.00 0.00 36.46 2.57
3522 3580 6.624423 CAATTTCCCGTTCTGAATCTTCATT 58.376 36.000 0.00 0.00 36.46 2.57
3523 3581 7.761409 CAATTTCCCGTTCTGAATCTTCATTA 58.239 34.615 0.00 0.00 36.46 1.90
3524 3582 8.408601 CAATTTCCCGTTCTGAATCTTCATTAT 58.591 33.333 0.00 0.00 36.46 1.28
3525 3583 7.553881 TTTCCCGTTCTGAATCTTCATTATC 57.446 36.000 0.00 0.00 36.46 1.75
3526 3584 5.289595 TCCCGTTCTGAATCTTCATTATCG 58.710 41.667 0.00 0.00 36.46 2.92
3527 3585 4.084328 CCCGTTCTGAATCTTCATTATCGC 60.084 45.833 0.00 0.00 36.46 4.58
3528 3586 4.507756 CCGTTCTGAATCTTCATTATCGCA 59.492 41.667 0.00 0.00 36.46 5.10
3529 3587 5.178252 CCGTTCTGAATCTTCATTATCGCAT 59.822 40.000 0.00 0.00 36.46 4.73
3558 3616 6.614906 ACAATTCTCTGAATCCTCCTGATACT 59.385 38.462 0.00 0.00 31.83 2.12
3559 3617 6.669125 ATTCTCTGAATCCTCCTGATACTG 57.331 41.667 0.00 0.00 31.83 2.74
3560 3618 5.394562 TCTCTGAATCCTCCTGATACTGA 57.605 43.478 0.00 0.00 31.83 3.41
3561 3619 5.963092 TCTCTGAATCCTCCTGATACTGAT 58.037 41.667 0.00 0.00 31.83 2.90
3562 3620 7.096402 TCTCTGAATCCTCCTGATACTGATA 57.904 40.000 0.00 0.00 31.83 2.15
3563 3621 6.945435 TCTCTGAATCCTCCTGATACTGATAC 59.055 42.308 0.00 0.00 31.83 2.24
3611 3669 7.012044 CACTGATGATCAAATCTCTACAATGCA 59.988 37.037 0.00 0.00 0.00 3.96
3631 3689 0.721718 CAGGAAAGAATGGCGTCGTC 59.278 55.000 0.00 0.00 0.00 4.20
3665 3723 3.255888 GGGTTCCTTTCTAGGTGCTTTTG 59.744 47.826 0.00 0.00 42.60 2.44
3667 3725 4.341235 GGTTCCTTTCTAGGTGCTTTTGTT 59.659 41.667 0.00 0.00 42.60 2.83
3845 3913 9.730705 ATGTTGAAATACAGATATGTATGGAGG 57.269 33.333 13.52 0.00 35.40 4.30
3912 3980 3.067106 TGAAGAGCTAAGGAAAGCAACG 58.933 45.455 0.00 0.00 45.30 4.10
4046 4125 7.505585 TGTGAGAAAGAAAATATGTTGACCCTT 59.494 33.333 0.00 0.00 0.00 3.95
4062 4141 4.284490 TGACCCTTATATGTGATGAGCTCC 59.716 45.833 12.15 0.00 0.00 4.70
4193 4272 4.621991 TCGCCATAAGAATCTAGTGAAGC 58.378 43.478 0.00 0.00 0.00 3.86
4310 4389 3.753797 TGCTTGATGCCACACGTTAAATA 59.246 39.130 0.00 0.00 42.00 1.40
4318 4397 4.155099 TGCCACACGTTAAATATCCACTTG 59.845 41.667 0.00 0.00 0.00 3.16
4395 4487 5.864418 TGGTACATGGGTATAGTTGTCTC 57.136 43.478 0.00 0.00 0.00 3.36
4400 4492 4.957954 ACATGGGTATAGTTGTCTCGGTTA 59.042 41.667 0.00 0.00 0.00 2.85
4406 4498 6.543831 GGGTATAGTTGTCTCGGTTAACTCTA 59.456 42.308 5.42 0.00 36.22 2.43
4410 4502 8.798859 ATAGTTGTCTCGGTTAACTCTAGTTA 57.201 34.615 5.42 0.00 39.31 2.24
4479 4573 2.110188 AGATCTAGAATGGCCGACCCTA 59.890 50.000 0.00 0.00 33.59 3.53
4498 4592 4.500035 CCCTACTCCATCTCGCTCTAAAAC 60.500 50.000 0.00 0.00 0.00 2.43
4511 4605 6.640518 TCGCTCTAAAACTGGAATGATTAGT 58.359 36.000 0.00 0.00 0.00 2.24
4649 4751 1.225704 CTGGGATCTGAGGGTTGGC 59.774 63.158 0.00 0.00 0.00 4.52
4849 4951 2.028112 TCGCTGGAACATTGTAAGCTCT 60.028 45.455 13.80 0.00 38.20 4.09
4866 4973 9.897744 TGTAAGCTCTGTTTTTCATATTCTTTG 57.102 29.630 0.00 0.00 0.00 2.77
4867 4974 9.346725 GTAAGCTCTGTTTTTCATATTCTTTGG 57.653 33.333 0.00 0.00 0.00 3.28
4868 4975 7.530426 AGCTCTGTTTTTCATATTCTTTGGT 57.470 32.000 0.00 0.00 0.00 3.67
4869 4976 7.955918 AGCTCTGTTTTTCATATTCTTTGGTT 58.044 30.769 0.00 0.00 0.00 3.67
4870 4977 7.869429 AGCTCTGTTTTTCATATTCTTTGGTTG 59.131 33.333 0.00 0.00 0.00 3.77
4871 4978 7.116805 GCTCTGTTTTTCATATTCTTTGGTTGG 59.883 37.037 0.00 0.00 0.00 3.77
4872 4979 8.017418 TCTGTTTTTCATATTCTTTGGTTGGT 57.983 30.769 0.00 0.00 0.00 3.67
4874 4981 6.481644 TGTTTTTCATATTCTTTGGTTGGTGC 59.518 34.615 0.00 0.00 0.00 5.01
4879 4986 0.394488 TTCTTTGGTTGGTGCACGGA 60.394 50.000 11.45 0.00 0.00 4.69
4880 4987 0.179004 TCTTTGGTTGGTGCACGGAT 60.179 50.000 11.45 0.00 0.00 4.18
4882 4989 0.671251 TTTGGTTGGTGCACGGATTC 59.329 50.000 11.45 0.00 0.00 2.52
4892 5000 1.705337 GCACGGATTCCCACACGATG 61.705 60.000 0.00 0.00 0.00 3.84
4912 5020 0.040425 CTTAACCAGCGGTGTTGCAC 60.040 55.000 14.40 0.00 35.34 4.57
4936 5044 4.746729 TGCCACATGATTTATTTCACTGC 58.253 39.130 0.00 0.00 0.00 4.40
4943 5051 6.153170 ACATGATTTATTTCACTGCCATGTCA 59.847 34.615 0.00 0.00 39.03 3.58
4955 5063 1.548081 CCATGTCAAATGGCCACAGA 58.452 50.000 8.16 2.93 31.75 3.41
4964 5072 2.149973 ATGGCCACAGAGGGATTTTC 57.850 50.000 8.16 0.00 38.09 2.29
5020 5128 2.289320 GGCTACATGGCTCCTGAGTATG 60.289 54.545 0.00 10.15 38.32 2.39
5022 5130 3.181461 GCTACATGGCTCCTGAGTATGTT 60.181 47.826 17.82 8.13 38.41 2.71
5067 5175 1.506493 CCGATGTCTTCAGCTATGGC 58.494 55.000 0.00 0.00 39.06 4.40
5161 5269 1.897560 AACAAAGGTACTGCTCAGGC 58.102 50.000 1.66 0.00 40.86 4.85
5199 5339 7.174946 GGTTCCTCTGTGAAAGTAAATTCATGA 59.825 37.037 0.00 0.00 41.09 3.07
5278 5418 5.764487 AGCATAGCTTTTTATTCAGAGGC 57.236 39.130 0.00 0.00 33.89 4.70
5340 5481 3.354678 GCACCATGTTGCCGTCTT 58.645 55.556 3.41 0.00 36.42 3.01
5451 5592 4.217767 TCATCTACAAAGATACGATCCGGG 59.782 45.833 0.00 0.00 40.65 5.73
5490 5631 2.025969 CAGATCGGGCTGCTATGCG 61.026 63.158 0.00 0.00 0.00 4.73
5525 5666 1.226974 CGACAGGCCTACCATGACG 60.227 63.158 3.98 1.50 39.06 4.35
5588 5729 1.186200 TTGTCCTGAGTGATCCTCCG 58.814 55.000 8.25 3.25 39.65 4.63
5624 5765 3.203040 AGGGGGTTGAGGATATGAAACAG 59.797 47.826 0.00 0.00 0.00 3.16
5627 5768 2.952310 GGTTGAGGATATGAAACAGGGC 59.048 50.000 0.00 0.00 0.00 5.19
5636 5777 1.301716 GAAACAGGGCGAGCAGTCA 60.302 57.895 0.00 0.00 0.00 3.41
5648 5789 0.178068 AGCAGTCACGGTTGTTGTCT 59.822 50.000 0.00 0.00 0.00 3.41
5666 5807 0.668706 CTGCACACTCTGGTCCTTCG 60.669 60.000 0.00 0.00 0.00 3.79
5712 5853 5.731591 ACTTGAACGGAAGATAACCCTAAG 58.268 41.667 0.00 0.00 0.00 2.18
5739 5880 3.901222 TGTTTTCCATCTCCCCCTTTTTC 59.099 43.478 0.00 0.00 0.00 2.29
5913 6056 3.674997 GATGAAGGTGGCAGTGTTTCTA 58.325 45.455 0.00 0.00 0.00 2.10
5925 6068 4.493220 GCAGTGTTTCTATTCTGTCGATGC 60.493 45.833 0.00 0.00 0.00 3.91
6120 6266 1.612395 AAAGAGAGGGCAGAGGAGCG 61.612 60.000 0.00 0.00 34.64 5.03
6154 6300 3.058777 GGAAACGAATTAGACGCAACCAA 60.059 43.478 0.00 0.00 0.00 3.67
6180 6326 3.446442 AGATCCACCAGCACAAGAAAT 57.554 42.857 0.00 0.00 0.00 2.17
6184 6330 1.274167 CCACCAGCACAAGAAATGCAT 59.726 47.619 0.00 0.00 45.92 3.96
6316 6463 0.606401 CGATTGAACAGTGCAGGGGT 60.606 55.000 0.00 0.00 0.00 4.95
6333 6480 1.017387 GGTCATTGGAGCCGTGAATC 58.983 55.000 0.00 0.00 35.49 2.52
6451 6598 4.017591 TCCATGACCACCATAGTTCCATTT 60.018 41.667 0.00 0.00 33.31 2.32
6536 6685 6.749118 GCTGATCATTAACAGAAACATTGGAC 59.251 38.462 0.00 0.00 36.38 4.02
6554 6703 7.599998 ACATTGGACTTGAATTACATTGCTTTC 59.400 33.333 0.00 0.00 0.00 2.62
6681 6830 7.746475 CCAATAGTTCTTTGAGAAAAGCTTACG 59.254 37.037 0.00 0.00 35.75 3.18
6699 6848 2.123428 GGCATGTGGATGTGCTCCC 61.123 63.158 0.00 0.00 44.23 4.30
6781 6930 0.889306 GTGCTCTTCTGAGTACCGGT 59.111 55.000 13.98 13.98 45.92 5.28
6859 7008 1.202336 GCTTACACATCATGCCCTTGC 60.202 52.381 0.00 0.00 38.26 4.01
6874 7023 1.228245 TTGCTGAAGGCCCTCACAC 60.228 57.895 0.00 0.00 40.92 3.82
6875 7024 1.993701 TTGCTGAAGGCCCTCACACA 61.994 55.000 0.00 0.00 40.92 3.72
6886 7035 0.247460 CCTCACACATGCTCTTCGGA 59.753 55.000 0.00 0.00 0.00 4.55
6887 7036 1.638133 CTCACACATGCTCTTCGGAG 58.362 55.000 0.00 0.00 44.45 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.574516 AAAGTTCTTGAATATAGGACACAAGTT 57.425 29.630 0.00 0.00 38.94 2.66
59 60 9.304335 TGTTCATATGAATATTCAATCATGGCT 57.696 29.630 21.50 5.78 41.13 4.75
92 93 9.846248 GGCGCTCTCATATTCATAATTAAAATT 57.154 29.630 7.64 0.00 0.00 1.82
93 94 8.177663 CGGCGCTCTCATATTCATAATTAAAAT 58.822 33.333 7.64 0.00 0.00 1.82
94 95 7.172532 ACGGCGCTCTCATATTCATAATTAAAA 59.827 33.333 6.90 0.00 0.00 1.52
95 96 6.649141 ACGGCGCTCTCATATTCATAATTAAA 59.351 34.615 6.90 0.00 0.00 1.52
96 97 6.163476 ACGGCGCTCTCATATTCATAATTAA 58.837 36.000 6.90 0.00 0.00 1.40
97 98 5.720202 ACGGCGCTCTCATATTCATAATTA 58.280 37.500 6.90 0.00 0.00 1.40
98 99 4.569943 ACGGCGCTCTCATATTCATAATT 58.430 39.130 6.90 0.00 0.00 1.40
99 100 4.177026 GACGGCGCTCTCATATTCATAAT 58.823 43.478 6.90 0.00 0.00 1.28
100 101 3.575630 GACGGCGCTCTCATATTCATAA 58.424 45.455 6.90 0.00 0.00 1.90
101 102 2.414161 CGACGGCGCTCTCATATTCATA 60.414 50.000 6.90 0.00 0.00 2.15
102 103 1.667177 CGACGGCGCTCTCATATTCAT 60.667 52.381 6.90 0.00 0.00 2.57
103 104 0.317854 CGACGGCGCTCTCATATTCA 60.318 55.000 6.90 0.00 0.00 2.57
104 105 0.317938 ACGACGGCGCTCTCATATTC 60.318 55.000 12.58 0.00 42.48 1.75
105 106 0.102481 AACGACGGCGCTCTCATATT 59.898 50.000 12.58 0.00 42.48 1.28
106 107 0.949397 TAACGACGGCGCTCTCATAT 59.051 50.000 12.58 0.00 42.48 1.78
107 108 0.734309 TTAACGACGGCGCTCTCATA 59.266 50.000 12.58 0.00 42.48 2.15
108 109 0.108992 TTTAACGACGGCGCTCTCAT 60.109 50.000 12.58 0.00 42.48 2.90
109 110 1.005294 GTTTAACGACGGCGCTCTCA 61.005 55.000 12.58 0.00 42.48 3.27
110 111 0.731855 AGTTTAACGACGGCGCTCTC 60.732 55.000 12.58 0.45 42.48 3.20
111 112 0.523072 TAGTTTAACGACGGCGCTCT 59.477 50.000 12.58 4.61 42.48 4.09
112 113 0.912528 CTAGTTTAACGACGGCGCTC 59.087 55.000 12.58 2.82 42.48 5.03
113 114 0.523072 TCTAGTTTAACGACGGCGCT 59.477 50.000 12.58 0.00 42.48 5.92
114 115 1.553308 ATCTAGTTTAACGACGGCGC 58.447 50.000 12.58 0.00 42.48 6.53
115 116 4.346129 ACTAATCTAGTTTAACGACGGCG 58.654 43.478 10.39 10.39 38.68 6.46
141 142 5.182190 TCGCCAAATGTAGTGATGCTAAAAA 59.818 36.000 0.00 0.00 0.00 1.94
142 143 4.697828 TCGCCAAATGTAGTGATGCTAAAA 59.302 37.500 0.00 0.00 0.00 1.52
143 144 4.257731 TCGCCAAATGTAGTGATGCTAAA 58.742 39.130 0.00 0.00 0.00 1.85
144 145 3.867857 TCGCCAAATGTAGTGATGCTAA 58.132 40.909 0.00 0.00 0.00 3.09
145 146 3.535280 TCGCCAAATGTAGTGATGCTA 57.465 42.857 0.00 0.00 0.00 3.49
146 147 2.401583 TCGCCAAATGTAGTGATGCT 57.598 45.000 0.00 0.00 0.00 3.79
147 148 2.420022 ACTTCGCCAAATGTAGTGATGC 59.580 45.455 0.00 0.00 0.00 3.91
148 149 4.685169 AACTTCGCCAAATGTAGTGATG 57.315 40.909 0.00 0.00 0.00 3.07
149 150 5.527582 GGATAACTTCGCCAAATGTAGTGAT 59.472 40.000 0.00 0.00 0.00 3.06
150 151 4.873827 GGATAACTTCGCCAAATGTAGTGA 59.126 41.667 0.00 0.00 0.00 3.41
151 152 4.634004 TGGATAACTTCGCCAAATGTAGTG 59.366 41.667 0.00 0.00 0.00 2.74
152 153 4.839121 TGGATAACTTCGCCAAATGTAGT 58.161 39.130 0.00 0.00 0.00 2.73
153 154 5.354234 ACTTGGATAACTTCGCCAAATGTAG 59.646 40.000 0.00 0.00 40.83 2.74
154 155 5.250200 ACTTGGATAACTTCGCCAAATGTA 58.750 37.500 0.00 0.00 40.83 2.29
155 156 4.079253 ACTTGGATAACTTCGCCAAATGT 58.921 39.130 0.00 0.00 40.83 2.71
156 157 4.701956 ACTTGGATAACTTCGCCAAATG 57.298 40.909 0.00 0.00 40.83 2.32
157 158 5.250200 TGTACTTGGATAACTTCGCCAAAT 58.750 37.500 0.00 0.00 40.83 2.32
158 159 4.643463 TGTACTTGGATAACTTCGCCAAA 58.357 39.130 0.00 0.00 40.83 3.28
159 160 4.274602 TGTACTTGGATAACTTCGCCAA 57.725 40.909 0.00 0.00 39.23 4.52
160 161 3.965379 TGTACTTGGATAACTTCGCCA 57.035 42.857 0.00 0.00 0.00 5.69
161 162 3.998341 TGTTGTACTTGGATAACTTCGCC 59.002 43.478 0.00 0.00 0.00 5.54
162 163 5.350365 TCATGTTGTACTTGGATAACTTCGC 59.650 40.000 0.00 0.00 0.00 4.70
163 164 6.961359 TCATGTTGTACTTGGATAACTTCG 57.039 37.500 0.00 0.00 0.00 3.79
164 165 7.750903 GCTTTCATGTTGTACTTGGATAACTTC 59.249 37.037 0.00 0.00 0.00 3.01
165 166 7.573096 CGCTTTCATGTTGTACTTGGATAACTT 60.573 37.037 0.00 0.00 0.00 2.66
166 167 6.128282 CGCTTTCATGTTGTACTTGGATAACT 60.128 38.462 0.00 0.00 0.00 2.24
167 168 6.021596 CGCTTTCATGTTGTACTTGGATAAC 58.978 40.000 0.00 0.00 0.00 1.89
168 169 5.703592 ACGCTTTCATGTTGTACTTGGATAA 59.296 36.000 0.00 0.00 0.00 1.75
169 170 5.242434 ACGCTTTCATGTTGTACTTGGATA 58.758 37.500 0.00 0.00 0.00 2.59
170 171 4.072131 ACGCTTTCATGTTGTACTTGGAT 58.928 39.130 0.00 0.00 0.00 3.41
171 172 3.472652 ACGCTTTCATGTTGTACTTGGA 58.527 40.909 0.00 0.00 0.00 3.53
172 173 3.896648 ACGCTTTCATGTTGTACTTGG 57.103 42.857 0.00 0.00 0.00 3.61
173 174 4.838642 CGTAACGCTTTCATGTTGTACTTG 59.161 41.667 0.00 0.00 0.00 3.16
174 175 4.084223 CCGTAACGCTTTCATGTTGTACTT 60.084 41.667 0.00 0.00 0.00 2.24
175 176 3.430895 CCGTAACGCTTTCATGTTGTACT 59.569 43.478 0.00 0.00 0.00 2.73
176 177 3.423907 CCCGTAACGCTTTCATGTTGTAC 60.424 47.826 0.00 0.00 0.00 2.90
177 178 2.737783 CCCGTAACGCTTTCATGTTGTA 59.262 45.455 0.00 0.00 0.00 2.41
178 179 1.533731 CCCGTAACGCTTTCATGTTGT 59.466 47.619 0.00 0.00 0.00 3.32
179 180 1.533731 ACCCGTAACGCTTTCATGTTG 59.466 47.619 0.00 0.00 0.00 3.33
180 181 1.533731 CACCCGTAACGCTTTCATGTT 59.466 47.619 0.00 0.00 0.00 2.71
181 182 1.153353 CACCCGTAACGCTTTCATGT 58.847 50.000 0.00 0.00 0.00 3.21
182 183 1.434555 TCACCCGTAACGCTTTCATG 58.565 50.000 0.00 0.00 0.00 3.07
183 184 2.073816 CTTCACCCGTAACGCTTTCAT 58.926 47.619 0.00 0.00 0.00 2.57
184 185 1.202557 ACTTCACCCGTAACGCTTTCA 60.203 47.619 0.00 0.00 0.00 2.69
185 186 1.193874 CACTTCACCCGTAACGCTTTC 59.806 52.381 0.00 0.00 0.00 2.62
186 187 1.223187 CACTTCACCCGTAACGCTTT 58.777 50.000 0.00 0.00 0.00 3.51
187 188 0.601841 CCACTTCACCCGTAACGCTT 60.602 55.000 0.00 0.00 0.00 4.68
188 189 1.005394 CCACTTCACCCGTAACGCT 60.005 57.895 0.00 0.00 0.00 5.07
189 190 0.390735 ATCCACTTCACCCGTAACGC 60.391 55.000 0.00 0.00 0.00 4.84
190 191 2.165030 ACTATCCACTTCACCCGTAACG 59.835 50.000 0.00 0.00 0.00 3.18
191 192 3.881937 ACTATCCACTTCACCCGTAAC 57.118 47.619 0.00 0.00 0.00 2.50
192 193 3.382546 GCTACTATCCACTTCACCCGTAA 59.617 47.826 0.00 0.00 0.00 3.18
193 194 2.954318 GCTACTATCCACTTCACCCGTA 59.046 50.000 0.00 0.00 0.00 4.02
194 195 1.755380 GCTACTATCCACTTCACCCGT 59.245 52.381 0.00 0.00 0.00 5.28
195 196 1.754803 TGCTACTATCCACTTCACCCG 59.245 52.381 0.00 0.00 0.00 5.28
196 197 2.500098 TGTGCTACTATCCACTTCACCC 59.500 50.000 0.00 0.00 33.26 4.61
197 198 3.887621 TGTGCTACTATCCACTTCACC 57.112 47.619 0.00 0.00 33.26 4.02
198 199 5.459107 CGTAATGTGCTACTATCCACTTCAC 59.541 44.000 0.00 0.00 33.26 3.18
199 200 5.126545 ACGTAATGTGCTACTATCCACTTCA 59.873 40.000 0.00 0.00 33.26 3.02
200 201 5.459107 CACGTAATGTGCTACTATCCACTTC 59.541 44.000 0.00 0.00 42.70 3.01
201 202 5.348986 CACGTAATGTGCTACTATCCACTT 58.651 41.667 0.00 0.00 42.70 3.16
202 203 4.933330 CACGTAATGTGCTACTATCCACT 58.067 43.478 0.00 0.00 42.70 4.00
223 224 1.586541 CAGCGACCTGTGACTAGCA 59.413 57.895 0.00 0.00 34.31 3.49
224 225 1.153745 CCAGCGACCTGTGACTAGC 60.154 63.158 0.00 0.00 37.38 3.42
225 226 0.171455 GACCAGCGACCTGTGACTAG 59.829 60.000 0.00 0.00 37.38 2.57
226 227 0.538746 TGACCAGCGACCTGTGACTA 60.539 55.000 0.00 0.00 37.38 2.59
227 228 1.832608 TGACCAGCGACCTGTGACT 60.833 57.895 0.00 0.00 37.38 3.41
228 229 1.664965 GTGACCAGCGACCTGTGAC 60.665 63.158 0.00 0.00 37.38 3.67
229 230 2.087462 CTGTGACCAGCGACCTGTGA 62.087 60.000 0.00 0.00 37.38 3.58
230 231 1.665916 CTGTGACCAGCGACCTGTG 60.666 63.158 0.00 0.00 37.38 3.66
231 232 1.810606 CTCTGTGACCAGCGACCTGT 61.811 60.000 0.00 0.00 38.66 4.00
232 233 1.080230 CTCTGTGACCAGCGACCTG 60.080 63.158 0.00 0.00 38.66 4.00
233 234 2.279069 CCTCTGTGACCAGCGACCT 61.279 63.158 0.00 0.00 38.66 3.85
234 235 2.262915 CCTCTGTGACCAGCGACC 59.737 66.667 0.00 0.00 38.66 4.79
235 236 1.080434 GTCCTCTGTGACCAGCGAC 60.080 63.158 0.00 0.00 38.66 5.19
236 237 0.900182 ATGTCCTCTGTGACCAGCGA 60.900 55.000 0.00 0.00 38.66 4.93
237 238 0.036952 AATGTCCTCTGTGACCAGCG 60.037 55.000 0.00 0.00 38.66 5.18
238 239 3.201290 CATAATGTCCTCTGTGACCAGC 58.799 50.000 0.00 0.00 38.66 4.85
239 240 4.186926 CACATAATGTCCTCTGTGACCAG 58.813 47.826 0.00 0.00 41.11 4.00
240 241 3.582647 ACACATAATGTCCTCTGTGACCA 59.417 43.478 8.38 0.00 41.11 4.02
241 242 4.207891 ACACATAATGTCCTCTGTGACC 57.792 45.455 8.38 0.00 41.11 4.02
242 243 6.398918 ACTAACACATAATGTCCTCTGTGAC 58.601 40.000 8.38 0.00 42.31 3.67
243 244 6.210584 TGACTAACACATAATGTCCTCTGTGA 59.789 38.462 8.38 0.00 42.31 3.58
244 245 6.398095 TGACTAACACATAATGTCCTCTGTG 58.602 40.000 0.00 0.00 42.31 3.66
245 246 6.605471 TGACTAACACATAATGTCCTCTGT 57.395 37.500 0.00 0.00 42.31 3.41
260 261 6.765989 ACTAAAAATGTGCTCTGTGACTAACA 59.234 34.615 0.00 0.00 37.22 2.41
261 262 7.190920 ACTAAAAATGTGCTCTGTGACTAAC 57.809 36.000 0.00 0.00 0.00 2.34
262 263 9.502091 AATACTAAAAATGTGCTCTGTGACTAA 57.498 29.630 0.00 0.00 0.00 2.24
264 265 7.986085 AATACTAAAAATGTGCTCTGTGACT 57.014 32.000 0.00 0.00 0.00 3.41
291 292 7.012232 GGTGGCATCTTCAATTTTTCTGAAAAA 59.988 33.333 25.35 25.35 43.76 1.94
292 293 6.482973 GGTGGCATCTTCAATTTTTCTGAAAA 59.517 34.615 11.33 11.33 38.96 2.29
293 294 5.990996 GGTGGCATCTTCAATTTTTCTGAAA 59.009 36.000 0.00 0.00 32.57 2.69
294 295 5.305128 AGGTGGCATCTTCAATTTTTCTGAA 59.695 36.000 0.00 0.00 0.00 3.02
295 296 4.834496 AGGTGGCATCTTCAATTTTTCTGA 59.166 37.500 0.00 0.00 0.00 3.27
296 297 5.143376 AGGTGGCATCTTCAATTTTTCTG 57.857 39.130 0.00 0.00 0.00 3.02
297 298 4.834496 TGAGGTGGCATCTTCAATTTTTCT 59.166 37.500 0.00 0.00 0.00 2.52
298 299 4.925646 GTGAGGTGGCATCTTCAATTTTTC 59.074 41.667 0.00 0.00 0.00 2.29
299 300 4.262592 GGTGAGGTGGCATCTTCAATTTTT 60.263 41.667 0.00 0.00 0.00 1.94
300 301 3.259123 GGTGAGGTGGCATCTTCAATTTT 59.741 43.478 0.00 0.00 0.00 1.82
301 302 2.827921 GGTGAGGTGGCATCTTCAATTT 59.172 45.455 0.00 0.00 0.00 1.82
302 303 2.225091 TGGTGAGGTGGCATCTTCAATT 60.225 45.455 0.00 0.00 0.00 2.32
303 304 1.355381 TGGTGAGGTGGCATCTTCAAT 59.645 47.619 0.00 0.00 0.00 2.57
304 305 0.770499 TGGTGAGGTGGCATCTTCAA 59.230 50.000 0.00 0.00 0.00 2.69
305 306 0.770499 TTGGTGAGGTGGCATCTTCA 59.230 50.000 0.00 0.00 0.00 3.02
306 307 2.134789 ATTGGTGAGGTGGCATCTTC 57.865 50.000 0.00 0.00 0.00 2.87
307 308 3.245229 TGTTATTGGTGAGGTGGCATCTT 60.245 43.478 0.00 0.00 0.00 2.40
308 309 2.308570 TGTTATTGGTGAGGTGGCATCT 59.691 45.455 0.00 0.00 0.00 2.90
309 310 2.722094 TGTTATTGGTGAGGTGGCATC 58.278 47.619 0.00 0.00 0.00 3.91
310 311 2.825532 GTTGTTATTGGTGAGGTGGCAT 59.174 45.455 0.00 0.00 0.00 4.40
311 312 2.235016 GTTGTTATTGGTGAGGTGGCA 58.765 47.619 0.00 0.00 0.00 4.92
312 313 2.228822 CTGTTGTTATTGGTGAGGTGGC 59.771 50.000 0.00 0.00 0.00 5.01
313 314 2.819608 CCTGTTGTTATTGGTGAGGTGG 59.180 50.000 0.00 0.00 0.00 4.61
314 315 2.819608 CCCTGTTGTTATTGGTGAGGTG 59.180 50.000 0.00 0.00 0.00 4.00
315 316 2.445525 ACCCTGTTGTTATTGGTGAGGT 59.554 45.455 0.00 0.00 0.00 3.85
316 317 3.154827 ACCCTGTTGTTATTGGTGAGG 57.845 47.619 0.00 0.00 0.00 3.86
317 318 5.529581 AAAACCCTGTTGTTATTGGTGAG 57.470 39.130 0.00 0.00 0.00 3.51
318 319 5.941555 AAAAACCCTGTTGTTATTGGTGA 57.058 34.783 0.00 0.00 0.00 4.02
351 352 8.628630 TTTTTCTGAAAACCACCTCAATTTTT 57.371 26.923 14.70 0.00 30.07 1.94
375 376 1.021968 GACGAGTGTGGCCAGTTTTT 58.978 50.000 5.11 0.00 0.00 1.94
376 377 0.818040 GGACGAGTGTGGCCAGTTTT 60.818 55.000 5.11 0.00 0.00 2.43
377 378 1.227853 GGACGAGTGTGGCCAGTTT 60.228 57.895 5.11 0.00 0.00 2.66
378 379 2.100879 GAGGACGAGTGTGGCCAGTT 62.101 60.000 5.11 0.00 0.00 3.16
379 380 2.524394 AGGACGAGTGTGGCCAGT 60.524 61.111 5.11 0.00 0.00 4.00
380 381 2.219325 GAGAGGACGAGTGTGGCCAG 62.219 65.000 5.11 0.00 0.00 4.85
381 382 2.203640 AGAGGACGAGTGTGGCCA 60.204 61.111 0.00 0.00 0.00 5.36
382 383 1.536943 AAGAGAGGACGAGTGTGGCC 61.537 60.000 0.00 0.00 0.00 5.36
383 384 0.109039 GAAGAGAGGACGAGTGTGGC 60.109 60.000 0.00 0.00 0.00 5.01
384 385 0.528470 GGAAGAGAGGACGAGTGTGG 59.472 60.000 0.00 0.00 0.00 4.17
385 386 0.528470 GGGAAGAGAGGACGAGTGTG 59.472 60.000 0.00 0.00 0.00 3.82
386 387 0.406361 AGGGAAGAGAGGACGAGTGT 59.594 55.000 0.00 0.00 0.00 3.55
387 388 1.099689 GAGGGAAGAGAGGACGAGTG 58.900 60.000 0.00 0.00 0.00 3.51
388 389 0.393267 CGAGGGAAGAGAGGACGAGT 60.393 60.000 0.00 0.00 0.00 4.18
389 390 0.393267 ACGAGGGAAGAGAGGACGAG 60.393 60.000 0.00 0.00 0.00 4.18
390 391 0.677098 CACGAGGGAAGAGAGGACGA 60.677 60.000 0.00 0.00 0.00 4.20
391 392 0.961358 ACACGAGGGAAGAGAGGACG 60.961 60.000 0.00 0.00 0.00 4.79
392 393 0.812549 GACACGAGGGAAGAGAGGAC 59.187 60.000 0.00 0.00 0.00 3.85
393 394 0.404426 TGACACGAGGGAAGAGAGGA 59.596 55.000 0.00 0.00 0.00 3.71
394 395 0.528470 GTGACACGAGGGAAGAGAGG 59.472 60.000 0.00 0.00 0.00 3.69
395 396 1.201181 CAGTGACACGAGGGAAGAGAG 59.799 57.143 0.00 0.00 0.00 3.20
396 397 1.202891 TCAGTGACACGAGGGAAGAGA 60.203 52.381 0.00 0.00 0.00 3.10
397 398 1.248486 TCAGTGACACGAGGGAAGAG 58.752 55.000 0.00 0.00 0.00 2.85
398 399 1.924731 ATCAGTGACACGAGGGAAGA 58.075 50.000 0.00 0.00 0.00 2.87
399 400 2.099921 CCTATCAGTGACACGAGGGAAG 59.900 54.545 0.00 0.00 0.00 3.46
400 401 2.100197 CCTATCAGTGACACGAGGGAA 58.900 52.381 0.00 0.00 0.00 3.97
401 402 1.685180 CCCTATCAGTGACACGAGGGA 60.685 57.143 23.23 11.58 45.65 4.20
402 403 0.747255 CCCTATCAGTGACACGAGGG 59.253 60.000 17.89 17.89 37.88 4.30
403 404 0.103208 GCCCTATCAGTGACACGAGG 59.897 60.000 0.00 6.00 0.00 4.63
404 405 0.248661 CGCCCTATCAGTGACACGAG 60.249 60.000 0.00 0.00 0.00 4.18
405 406 1.807226 CGCCCTATCAGTGACACGA 59.193 57.895 0.00 1.35 0.00 4.35
406 407 1.878522 GCGCCCTATCAGTGACACG 60.879 63.158 0.00 0.00 0.00 4.49
407 408 1.521681 GGCGCCCTATCAGTGACAC 60.522 63.158 18.11 0.00 0.00 3.67
408 409 2.731571 GGGCGCCCTATCAGTGACA 61.732 63.158 38.76 0.00 0.00 3.58
409 410 2.109181 GGGCGCCCTATCAGTGAC 59.891 66.667 38.76 7.31 0.00 3.67
410 411 3.161450 GGGGCGCCCTATCAGTGA 61.161 66.667 42.70 0.00 41.34 3.41
411 412 3.479203 TGGGGCGCCCTATCAGTG 61.479 66.667 42.70 0.00 45.70 3.66
412 413 3.480133 GTGGGGCGCCCTATCAGT 61.480 66.667 42.70 0.00 45.70 3.41
413 414 4.609018 CGTGGGGCGCCCTATCAG 62.609 72.222 42.70 27.76 45.70 2.90
431 432 2.898840 CTAGGCATGCCAGCGTGG 60.899 66.667 37.18 15.86 41.55 4.94
432 433 2.124983 ACTAGGCATGCCAGCGTG 60.125 61.111 37.18 22.53 38.92 5.34
433 434 2.187946 GACTAGGCATGCCAGCGT 59.812 61.111 37.18 28.26 38.92 5.07
434 435 1.886313 CTGACTAGGCATGCCAGCG 60.886 63.158 37.18 25.41 38.92 5.18
435 436 2.185494 GCTGACTAGGCATGCCAGC 61.185 63.158 37.18 30.56 42.52 4.85
436 437 1.886313 CGCTGACTAGGCATGCCAG 60.886 63.158 37.18 30.38 38.92 4.85
437 438 2.187685 CGCTGACTAGGCATGCCA 59.812 61.111 37.18 21.91 38.92 4.92
438 439 2.590007 CCGCTGACTAGGCATGCC 60.590 66.667 30.12 30.12 0.00 4.40
439 440 1.884926 GACCGCTGACTAGGCATGC 60.885 63.158 9.90 9.90 0.00 4.06
440 441 1.227380 GGACCGCTGACTAGGCATG 60.227 63.158 0.00 0.00 0.00 4.06
441 442 1.680522 CTGGACCGCTGACTAGGCAT 61.681 60.000 0.00 0.00 0.00 4.40
442 443 2.283604 TGGACCGCTGACTAGGCA 60.284 61.111 0.00 0.00 0.00 4.75
443 444 2.352032 ACTGGACCGCTGACTAGGC 61.352 63.158 0.00 0.00 0.00 3.93
444 445 1.513158 CACTGGACCGCTGACTAGG 59.487 63.158 0.00 0.00 0.00 3.02
445 446 1.251527 ACCACTGGACCGCTGACTAG 61.252 60.000 0.71 0.00 0.00 2.57
446 447 0.038599 TACCACTGGACCGCTGACTA 59.961 55.000 0.71 0.00 0.00 2.59
447 448 0.614979 ATACCACTGGACCGCTGACT 60.615 55.000 0.71 0.00 0.00 3.41
448 449 1.108776 TATACCACTGGACCGCTGAC 58.891 55.000 0.71 0.00 0.00 3.51
449 450 1.855295 TTATACCACTGGACCGCTGA 58.145 50.000 0.71 0.00 0.00 4.26
450 451 2.684001 TTTATACCACTGGACCGCTG 57.316 50.000 0.71 0.00 0.00 5.18
451 452 3.199071 TGATTTTATACCACTGGACCGCT 59.801 43.478 0.71 0.00 0.00 5.52
452 453 3.537580 TGATTTTATACCACTGGACCGC 58.462 45.455 0.71 0.00 0.00 5.68
453 454 5.424757 TCTTGATTTTATACCACTGGACCG 58.575 41.667 0.71 0.00 0.00 4.79
454 455 7.881775 AATCTTGATTTTATACCACTGGACC 57.118 36.000 0.71 0.00 0.00 4.46
455 456 7.702348 GCAAATCTTGATTTTATACCACTGGAC 59.298 37.037 0.71 0.00 0.00 4.02
456 457 7.395772 TGCAAATCTTGATTTTATACCACTGGA 59.604 33.333 0.71 0.00 0.00 3.86
457 458 7.489113 GTGCAAATCTTGATTTTATACCACTGG 59.511 37.037 5.92 0.00 0.00 4.00
458 459 8.246180 AGTGCAAATCTTGATTTTATACCACTG 58.754 33.333 5.92 0.00 0.00 3.66
459 460 8.246180 CAGTGCAAATCTTGATTTTATACCACT 58.754 33.333 5.92 9.92 0.00 4.00
460 461 8.028938 ACAGTGCAAATCTTGATTTTATACCAC 58.971 33.333 5.92 8.34 0.00 4.16
461 462 8.121305 ACAGTGCAAATCTTGATTTTATACCA 57.879 30.769 5.92 0.00 0.00 3.25
466 467 8.924691 GCAAATACAGTGCAAATCTTGATTTTA 58.075 29.630 5.92 0.00 41.80 1.52
467 468 7.799784 GCAAATACAGTGCAAATCTTGATTTT 58.200 30.769 5.92 0.00 41.80 1.82
468 469 7.355332 GCAAATACAGTGCAAATCTTGATTT 57.645 32.000 3.04 3.04 41.80 2.17
469 470 6.956299 GCAAATACAGTGCAAATCTTGATT 57.044 33.333 0.00 0.00 41.80 2.57
480 481 1.330306 CAAGCGTGCAAATACAGTGC 58.670 50.000 0.00 0.00 42.55 4.40
481 482 2.309693 CACAAGCGTGCAAATACAGTG 58.690 47.619 0.00 0.00 36.06 3.66
482 483 2.686558 CACAAGCGTGCAAATACAGT 57.313 45.000 0.00 0.00 36.06 3.55
498 499 2.632028 ACTGGTGCAATAATTTGGCACA 59.368 40.909 22.15 12.30 39.51 4.57
499 500 3.317603 ACTGGTGCAATAATTTGGCAC 57.682 42.857 16.10 16.10 38.26 5.01
500 501 3.323115 TGAACTGGTGCAATAATTTGGCA 59.677 39.130 0.00 0.00 33.22 4.92
501 502 3.924144 TGAACTGGTGCAATAATTTGGC 58.076 40.909 0.00 0.00 33.22 4.52
502 503 9.985730 ATATATTGAACTGGTGCAATAATTTGG 57.014 29.630 15.52 0.00 39.56 3.28
506 507 9.353431 TGACATATATTGAACTGGTGCAATAAT 57.647 29.630 15.52 9.37 39.56 1.28
507 508 8.620416 GTGACATATATTGAACTGGTGCAATAA 58.380 33.333 15.52 7.92 39.56 1.40
508 509 7.772757 TGTGACATATATTGAACTGGTGCAATA 59.227 33.333 14.32 14.32 40.18 1.90
509 510 6.602803 TGTGACATATATTGAACTGGTGCAAT 59.397 34.615 11.19 11.19 38.24 3.56
510 511 5.942826 TGTGACATATATTGAACTGGTGCAA 59.057 36.000 0.00 0.00 0.00 4.08
511 512 5.495640 TGTGACATATATTGAACTGGTGCA 58.504 37.500 0.00 0.00 0.00 4.57
512 513 6.094048 AGTTGTGACATATATTGAACTGGTGC 59.906 38.462 0.00 0.00 0.00 5.01
513 514 7.615582 AGTTGTGACATATATTGAACTGGTG 57.384 36.000 0.00 0.00 0.00 4.17
514 515 8.103305 AGAAGTTGTGACATATATTGAACTGGT 58.897 33.333 0.00 0.00 0.00 4.00
515 516 8.498054 AGAAGTTGTGACATATATTGAACTGG 57.502 34.615 0.00 0.00 0.00 4.00
517 518 9.319143 GCTAGAAGTTGTGACATATATTGAACT 57.681 33.333 0.00 0.00 0.00 3.01
518 519 9.098355 TGCTAGAAGTTGTGACATATATTGAAC 57.902 33.333 0.00 0.00 0.00 3.18
519 520 9.836864 ATGCTAGAAGTTGTGACATATATTGAA 57.163 29.630 0.00 0.00 0.00 2.69
520 521 9.836864 AATGCTAGAAGTTGTGACATATATTGA 57.163 29.630 0.00 0.00 0.00 2.57
527 528 9.013229 TCATTTTAATGCTAGAAGTTGTGACAT 57.987 29.630 0.00 0.00 36.36 3.06
528 529 8.289618 GTCATTTTAATGCTAGAAGTTGTGACA 58.710 33.333 0.00 0.00 36.36 3.58
529 530 8.507249 AGTCATTTTAATGCTAGAAGTTGTGAC 58.493 33.333 0.00 0.00 36.36 3.67
530 531 8.506437 CAGTCATTTTAATGCTAGAAGTTGTGA 58.494 33.333 0.00 0.00 36.36 3.58
531 532 8.292448 ACAGTCATTTTAATGCTAGAAGTTGTG 58.708 33.333 0.00 0.00 36.36 3.33
532 533 8.396272 ACAGTCATTTTAATGCTAGAAGTTGT 57.604 30.769 0.00 0.00 36.36 3.32
533 534 8.725148 AGACAGTCATTTTAATGCTAGAAGTTG 58.275 33.333 2.66 0.00 36.36 3.16
534 535 8.725148 CAGACAGTCATTTTAATGCTAGAAGTT 58.275 33.333 2.66 0.00 36.36 2.66
535 536 7.148340 GCAGACAGTCATTTTAATGCTAGAAGT 60.148 37.037 2.66 0.00 36.36 3.01
536 537 7.148356 TGCAGACAGTCATTTTAATGCTAGAAG 60.148 37.037 2.66 0.00 36.36 2.85
537 538 6.654582 TGCAGACAGTCATTTTAATGCTAGAA 59.345 34.615 2.66 0.00 36.36 2.10
538 539 6.092670 GTGCAGACAGTCATTTTAATGCTAGA 59.907 38.462 2.66 0.00 36.36 2.43
539 540 6.253746 GTGCAGACAGTCATTTTAATGCTAG 58.746 40.000 2.66 0.00 36.36 3.42
540 541 5.123820 GGTGCAGACAGTCATTTTAATGCTA 59.876 40.000 2.66 0.00 36.36 3.49
541 542 4.082571 GGTGCAGACAGTCATTTTAATGCT 60.083 41.667 2.66 0.00 36.36 3.79
542 543 4.168760 GGTGCAGACAGTCATTTTAATGC 58.831 43.478 2.66 2.56 36.36 3.56
543 544 5.156355 GTGGTGCAGACAGTCATTTTAATG 58.844 41.667 2.66 0.00 37.75 1.90
544 545 4.083324 CGTGGTGCAGACAGTCATTTTAAT 60.083 41.667 2.66 0.00 0.00 1.40
545 546 3.249799 CGTGGTGCAGACAGTCATTTTAA 59.750 43.478 2.66 0.00 0.00 1.52
546 547 2.805671 CGTGGTGCAGACAGTCATTTTA 59.194 45.455 2.66 0.00 0.00 1.52
547 548 1.603802 CGTGGTGCAGACAGTCATTTT 59.396 47.619 2.66 0.00 0.00 1.82
548 549 1.229428 CGTGGTGCAGACAGTCATTT 58.771 50.000 2.66 0.00 0.00 2.32
549 550 0.106708 ACGTGGTGCAGACAGTCATT 59.893 50.000 2.66 0.00 0.00 2.57
550 551 0.106708 AACGTGGTGCAGACAGTCAT 59.893 50.000 2.66 0.00 0.00 3.06
551 552 0.529773 GAACGTGGTGCAGACAGTCA 60.530 55.000 2.66 0.00 0.00 3.41
552 553 0.249489 AGAACGTGGTGCAGACAGTC 60.249 55.000 0.00 0.00 0.00 3.51
553 554 1.000163 CTAGAACGTGGTGCAGACAGT 60.000 52.381 0.00 0.00 0.00 3.55
554 555 1.702886 CTAGAACGTGGTGCAGACAG 58.297 55.000 0.00 0.00 0.00 3.51
555 556 0.319555 GCTAGAACGTGGTGCAGACA 60.320 55.000 0.00 0.00 0.00 3.41
556 557 0.319555 TGCTAGAACGTGGTGCAGAC 60.320 55.000 0.00 0.00 0.00 3.51
557 558 0.608130 ATGCTAGAACGTGGTGCAGA 59.392 50.000 10.55 0.00 37.07 4.26
558 559 1.002366 GATGCTAGAACGTGGTGCAG 58.998 55.000 10.55 0.00 37.07 4.41
559 560 0.320050 TGATGCTAGAACGTGGTGCA 59.680 50.000 7.93 7.93 38.05 4.57
560 561 1.594862 GATGATGCTAGAACGTGGTGC 59.405 52.381 0.00 0.00 0.00 5.01
561 562 2.892374 TGATGATGCTAGAACGTGGTG 58.108 47.619 0.00 0.00 0.00 4.17
562 563 3.610040 TTGATGATGCTAGAACGTGGT 57.390 42.857 0.00 0.00 0.00 4.16
563 564 3.873361 ACATTGATGATGCTAGAACGTGG 59.127 43.478 0.00 0.00 39.47 4.94
564 565 6.588348 TTACATTGATGATGCTAGAACGTG 57.412 37.500 0.00 0.00 39.47 4.49
565 566 7.495606 TCAATTACATTGATGATGCTAGAACGT 59.504 33.333 0.00 0.00 43.84 3.99
566 567 7.854534 TCAATTACATTGATGATGCTAGAACG 58.145 34.615 0.00 0.00 43.84 3.95
597 598 4.263287 GCCCTTAATCCACCCACAATTTTT 60.263 41.667 0.00 0.00 0.00 1.94
598 599 3.263170 GCCCTTAATCCACCCACAATTTT 59.737 43.478 0.00 0.00 0.00 1.82
599 600 2.837591 GCCCTTAATCCACCCACAATTT 59.162 45.455 0.00 0.00 0.00 1.82
600 601 2.044353 AGCCCTTAATCCACCCACAATT 59.956 45.455 0.00 0.00 0.00 2.32
601 602 1.645919 AGCCCTTAATCCACCCACAAT 59.354 47.619 0.00 0.00 0.00 2.71
602 603 1.005450 GAGCCCTTAATCCACCCACAA 59.995 52.381 0.00 0.00 0.00 3.33
749 750 2.740055 GTGGTGGAGTGCTCTGCG 60.740 66.667 2.77 0.00 34.70 5.18
796 797 3.379445 CGGCTGGGACACGTAGGT 61.379 66.667 0.00 0.00 0.00 3.08
799 808 1.904865 AAGACGGCTGGGACACGTA 60.905 57.895 0.00 0.00 41.03 3.57
809 818 3.537206 GACACTGGGCAAGACGGCT 62.537 63.158 0.00 0.00 40.90 5.52
849 859 1.676303 GGGCGAATGGAACGGGAAA 60.676 57.895 0.00 0.00 0.00 3.13
960 970 2.747855 GGGTTTGGGCTGAGCGAG 60.748 66.667 0.00 0.00 0.00 5.03
982 992 1.213926 ACGACTAGGTAGGTAGGTGGG 59.786 57.143 0.00 0.00 0.00 4.61
994 1004 2.872370 CGGTGGAAACTTACGACTAGG 58.128 52.381 0.00 0.00 0.00 3.02
996 1006 1.612950 TGCGGTGGAAACTTACGACTA 59.387 47.619 0.00 0.00 0.00 2.59
997 1007 0.390124 TGCGGTGGAAACTTACGACT 59.610 50.000 0.00 0.00 0.00 4.18
998 1008 0.788391 CTGCGGTGGAAACTTACGAC 59.212 55.000 0.00 0.00 0.00 4.34
999 1009 0.947180 GCTGCGGTGGAAACTTACGA 60.947 55.000 0.00 0.00 0.00 3.43
1019 1029 2.203337 TTGGCTGAGTGGTGTGGC 60.203 61.111 0.00 0.00 0.00 5.01
1021 1031 0.538057 ATGGTTGGCTGAGTGGTGTG 60.538 55.000 0.00 0.00 0.00 3.82
1022 1033 0.538057 CATGGTTGGCTGAGTGGTGT 60.538 55.000 0.00 0.00 0.00 4.16
1024 1035 1.075482 CCATGGTTGGCTGAGTGGT 59.925 57.895 2.57 0.00 35.85 4.16
1339 1371 3.710722 CTTGGGGAGCAGCGACCT 61.711 66.667 10.64 0.00 0.00 3.85
1412 1444 0.175989 GCCGAGGAAGGAGTAGTTGG 59.824 60.000 0.00 0.00 0.00 3.77
1749 1781 1.129437 GCGTTCACATTCCAGAAGAGC 59.871 52.381 0.00 0.00 0.00 4.09
1776 1808 2.248686 AGTACCTGATGATCCTGACCCT 59.751 50.000 0.00 0.00 0.00 4.34
1782 1814 6.015010 GTGTTATAGCAGTACCTGATGATCCT 60.015 42.308 0.00 0.00 32.44 3.24
1846 1887 1.983972 AGCATCTCAGACGAACGAAC 58.016 50.000 0.14 0.00 0.00 3.95
1852 1893 4.944619 AATGGATTAGCATCTCAGACGA 57.055 40.909 0.00 0.00 0.00 4.20
1853 1894 5.167121 CCTAATGGATTAGCATCTCAGACG 58.833 45.833 1.41 0.00 38.69 4.18
1854 1895 4.934602 GCCTAATGGATTAGCATCTCAGAC 59.065 45.833 1.41 0.00 38.69 3.51
1855 1896 4.019860 GGCCTAATGGATTAGCATCTCAGA 60.020 45.833 0.00 0.00 38.69 3.27
1897 1938 5.535753 AAGCTAGCTGTTTGGTGAAAATT 57.464 34.783 20.16 0.00 0.00 1.82
1950 1991 8.370182 ACCATGAGCTGAAAATAGTCAAAATTT 58.630 29.630 0.00 0.00 0.00 1.82
1979 2020 7.012327 CAGTCAACAAAGTGAGGTCATAAAAGA 59.988 37.037 0.00 0.00 0.00 2.52
1980 2021 7.012327 TCAGTCAACAAAGTGAGGTCATAAAAG 59.988 37.037 0.00 0.00 0.00 2.27
1981 2022 6.826231 TCAGTCAACAAAGTGAGGTCATAAAA 59.174 34.615 0.00 0.00 0.00 1.52
2021 2062 0.249911 ACGACAAAGCACCACCTCTC 60.250 55.000 0.00 0.00 0.00 3.20
2045 2086 7.010645 GTGAATTTGTAACCGGTTTTTGACAAT 59.989 33.333 27.64 14.89 0.00 2.71
2173 2222 3.543680 TCCAGCTCTGCATAACCTAAC 57.456 47.619 0.00 0.00 0.00 2.34
2190 2239 8.983702 AGTTTGTACTGTAGGTTTTATTTCCA 57.016 30.769 0.00 0.00 31.99 3.53
2214 2271 6.233430 GCATATGCACTCACATAAGGTAAG 57.767 41.667 22.84 0.00 41.59 2.34
2441 2498 3.115892 TCGATCCGGCGTTGTTGC 61.116 61.111 6.01 0.00 0.00 4.17
2589 2646 1.964933 CGGGAGAAATCCTAGGACTCC 59.035 57.143 27.82 27.82 44.21 3.85
3498 3556 5.627499 TGAAGATTCAGAACGGGAAATTG 57.373 39.130 0.00 0.00 32.50 2.32
3499 3557 6.840780 AATGAAGATTCAGAACGGGAAATT 57.159 33.333 1.32 0.00 41.08 1.82
3500 3558 7.041780 CGATAATGAAGATTCAGAACGGGAAAT 60.042 37.037 1.32 0.00 41.08 2.17
3501 3559 6.257849 CGATAATGAAGATTCAGAACGGGAAA 59.742 38.462 1.32 0.00 41.08 3.13
3502 3560 5.753438 CGATAATGAAGATTCAGAACGGGAA 59.247 40.000 1.32 0.00 41.08 3.97
3503 3561 5.289595 CGATAATGAAGATTCAGAACGGGA 58.710 41.667 1.32 0.00 41.08 5.14
3504 3562 4.084328 GCGATAATGAAGATTCAGAACGGG 60.084 45.833 1.32 0.00 41.08 5.28
3505 3563 4.507756 TGCGATAATGAAGATTCAGAACGG 59.492 41.667 1.32 0.00 41.08 4.44
3506 3564 5.641777 TGCGATAATGAAGATTCAGAACG 57.358 39.130 1.32 4.08 41.08 3.95
3507 3565 9.935682 TTAAATGCGATAATGAAGATTCAGAAC 57.064 29.630 1.32 0.00 41.08 3.01
3508 3566 9.935682 GTTAAATGCGATAATGAAGATTCAGAA 57.064 29.630 1.32 0.00 41.08 3.02
3509 3567 9.108284 TGTTAAATGCGATAATGAAGATTCAGA 57.892 29.630 1.32 0.00 41.08 3.27
3510 3568 9.720667 TTGTTAAATGCGATAATGAAGATTCAG 57.279 29.630 1.32 0.00 41.08 3.02
3515 3573 9.935682 GAGAATTGTTAAATGCGATAATGAAGA 57.064 29.630 0.00 0.00 0.00 2.87
3516 3574 9.941664 AGAGAATTGTTAAATGCGATAATGAAG 57.058 29.630 0.00 0.00 0.00 3.02
3517 3575 9.720667 CAGAGAATTGTTAAATGCGATAATGAA 57.279 29.630 0.00 0.00 0.00 2.57
3518 3576 9.108284 TCAGAGAATTGTTAAATGCGATAATGA 57.892 29.630 0.00 0.00 0.00 2.57
3519 3577 9.720667 TTCAGAGAATTGTTAAATGCGATAATG 57.279 29.630 0.00 0.00 0.00 1.90
3521 3579 9.935682 GATTCAGAGAATTGTTAAATGCGATAA 57.064 29.630 0.00 0.00 0.00 1.75
3522 3580 8.559536 GGATTCAGAGAATTGTTAAATGCGATA 58.440 33.333 0.00 0.00 0.00 2.92
3523 3581 7.284034 AGGATTCAGAGAATTGTTAAATGCGAT 59.716 33.333 0.00 0.00 0.00 4.58
3524 3582 6.599244 AGGATTCAGAGAATTGTTAAATGCGA 59.401 34.615 0.00 0.00 0.00 5.10
3525 3583 6.789262 AGGATTCAGAGAATTGTTAAATGCG 58.211 36.000 0.00 0.00 0.00 4.73
3526 3584 7.067981 AGGAGGATTCAGAGAATTGTTAAATGC 59.932 37.037 0.00 0.00 0.00 3.56
3527 3585 8.404000 CAGGAGGATTCAGAGAATTGTTAAATG 58.596 37.037 0.00 0.00 0.00 2.32
3528 3586 8.331740 TCAGGAGGATTCAGAGAATTGTTAAAT 58.668 33.333 0.00 0.00 0.00 1.40
3529 3587 7.689299 TCAGGAGGATTCAGAGAATTGTTAAA 58.311 34.615 0.00 0.00 0.00 1.52
3559 3617 9.971744 GCAAAAACATAAACAAATGGATGTATC 57.028 29.630 0.00 0.00 32.31 2.24
3560 3618 9.499479 TGCAAAAACATAAACAAATGGATGTAT 57.501 25.926 0.00 0.00 32.31 2.29
3561 3619 8.768955 GTGCAAAAACATAAACAAATGGATGTA 58.231 29.630 0.00 0.00 32.31 2.29
3562 3620 7.498570 AGTGCAAAAACATAAACAAATGGATGT 59.501 29.630 0.00 0.00 34.00 3.06
3563 3621 7.799447 CAGTGCAAAAACATAAACAAATGGATG 59.201 33.333 0.00 0.00 0.00 3.51
3611 3669 0.034896 ACGACGCCATTCTTTCCTGT 59.965 50.000 0.00 0.00 0.00 4.00
3631 3689 6.253946 AGAAAGGAACCCACTAATATCCAG 57.746 41.667 0.00 0.00 32.47 3.86
3665 3723 7.115378 CAGAAAAGCAATAATGAGGACAACAAC 59.885 37.037 0.00 0.00 0.00 3.32
3667 3725 6.294675 CCAGAAAAGCAATAATGAGGACAACA 60.295 38.462 0.00 0.00 0.00 3.33
3703 3761 6.183361 ACTGTTTCTTTCTCCTCAGAATTCCT 60.183 38.462 0.65 0.00 38.50 3.36
3845 3913 2.999355 GCAATTCTGACAGAGACTCCAC 59.001 50.000 5.10 0.00 0.00 4.02
3912 3980 5.054390 TGTTTGCTGGGTCGAAATAATTC 57.946 39.130 0.00 0.00 0.00 2.17
3924 3992 1.480137 TGACCAAGTTTGTTTGCTGGG 59.520 47.619 0.00 0.00 32.11 4.45
4009 4077 8.779354 ATTTTCTTTCTCACACTACCTGTATC 57.221 34.615 0.00 0.00 0.00 2.24
4013 4092 8.553459 ACATATTTTCTTTCTCACACTACCTG 57.447 34.615 0.00 0.00 0.00 4.00
4046 4125 3.444034 GCCTACGGAGCTCATCACATATA 59.556 47.826 17.19 0.00 0.00 0.86
4052 4131 0.684479 ACAGCCTACGGAGCTCATCA 60.684 55.000 17.19 0.00 38.95 3.07
4114 4193 1.829222 TCGACCCACTCCCTTGTATTC 59.171 52.381 0.00 0.00 0.00 1.75
4252 4331 7.174946 CCAAACAAGAATAGTTCAAGGCTCTTA 59.825 37.037 0.00 0.00 0.00 2.10
4310 4389 6.938030 TCAAAGAAAATACGGTACAAGTGGAT 59.062 34.615 0.00 0.00 0.00 3.41
4450 4544 8.475639 GGTCGGCCATTCTAGATCTTTAATATA 58.524 37.037 0.00 0.00 34.09 0.86
4460 4554 2.158295 AGTAGGGTCGGCCATTCTAGAT 60.158 50.000 9.07 0.00 36.17 1.98
4473 4567 0.955905 GAGCGAGATGGAGTAGGGTC 59.044 60.000 0.00 0.00 0.00 4.46
4474 4568 0.553819 AGAGCGAGATGGAGTAGGGT 59.446 55.000 0.00 0.00 0.00 4.34
4479 4573 3.118956 CCAGTTTTAGAGCGAGATGGAGT 60.119 47.826 0.00 0.00 0.00 3.85
4498 4592 8.474025 AGAGTTCAAGTCTACTAATCATTCCAG 58.526 37.037 0.00 0.00 0.00 3.86
4511 4605 6.434340 TGCACTGATAGAAGAGTTCAAGTCTA 59.566 38.462 0.00 0.00 0.00 2.59
4649 4751 3.490933 CCTCTGCAATGCCTTGAATGATG 60.491 47.826 1.53 0.00 34.04 3.07
4849 4951 6.481644 GCACCAACCAAAGAATATGAAAAACA 59.518 34.615 0.00 0.00 0.00 2.83
4865 4972 1.602323 GGAATCCGTGCACCAACCA 60.602 57.895 12.15 0.00 0.00 3.67
4866 4973 2.340328 GGGAATCCGTGCACCAACC 61.340 63.158 12.15 7.85 0.00 3.77
4867 4974 1.602323 TGGGAATCCGTGCACCAAC 60.602 57.895 12.15 0.00 35.24 3.77
4868 4975 1.602323 GTGGGAATCCGTGCACCAA 60.602 57.895 12.15 0.00 35.24 3.67
4869 4976 2.033448 GTGGGAATCCGTGCACCA 59.967 61.111 12.15 0.00 35.24 4.17
4870 4977 2.033448 TGTGGGAATCCGTGCACC 59.967 61.111 12.15 0.00 35.24 5.01
4871 4978 2.677003 CGTGTGGGAATCCGTGCAC 61.677 63.158 6.82 6.82 35.24 4.57
4872 4979 2.178876 ATCGTGTGGGAATCCGTGCA 62.179 55.000 0.00 0.00 35.24 4.57
4874 4981 1.705337 GCATCGTGTGGGAATCCGTG 61.705 60.000 0.00 0.00 35.24 4.94
4879 4986 2.290641 TGGTTAAGCATCGTGTGGGAAT 60.291 45.455 2.54 0.00 0.00 3.01
4880 4987 1.072489 TGGTTAAGCATCGTGTGGGAA 59.928 47.619 2.54 0.00 0.00 3.97
4882 4989 1.086696 CTGGTTAAGCATCGTGTGGG 58.913 55.000 7.98 0.00 0.00 4.61
4892 5000 3.905227 GTGCAACACCGCTGGTTAAGC 62.905 57.143 0.00 0.00 42.77 3.09
4912 5020 5.290158 GCAGTGAAATAAATCATGTGGCAAG 59.710 40.000 0.00 0.00 0.00 4.01
4936 5044 1.475280 CTCTGTGGCCATTTGACATGG 59.525 52.381 9.72 0.00 41.99 3.66
4943 5051 2.629017 AAATCCCTCTGTGGCCATTT 57.371 45.000 9.72 0.00 0.00 2.32
4949 5057 4.500499 AGATCAGAAAATCCCTCTGTGG 57.500 45.455 0.00 0.00 41.00 4.17
4955 5063 4.226846 TGAGCTCAAGATCAGAAAATCCCT 59.773 41.667 15.67 0.00 35.30 4.20
4964 5072 6.339730 ACTTATTCAGTGAGCTCAAGATCAG 58.660 40.000 20.19 15.81 41.51 2.90
5020 5128 1.202177 CGTAAGATGGCCATGCACAAC 60.202 52.381 26.56 12.56 43.02 3.32
5022 5130 0.747644 CCGTAAGATGGCCATGCACA 60.748 55.000 26.56 1.94 43.02 4.57
5067 5175 5.800438 TGTTATGATCTCGAGAACAAGAACG 59.200 40.000 28.64 3.04 33.49 3.95
5199 5339 5.363580 GGAATGGTGTCCAATGGAACATAAT 59.636 40.000 2.31 0.84 39.68 1.28
5267 5407 9.739276 TCAAATAAGAAAGAAGCCTCTGAATAA 57.261 29.630 0.00 0.00 30.03 1.40
5269 5409 7.887495 AGTCAAATAAGAAAGAAGCCTCTGAAT 59.113 33.333 0.00 0.00 30.03 2.57
5270 5410 7.227156 AGTCAAATAAGAAAGAAGCCTCTGAA 58.773 34.615 0.00 0.00 30.03 3.02
5272 5412 7.303998 CAAGTCAAATAAGAAAGAAGCCTCTG 58.696 38.462 0.00 0.00 30.03 3.35
5273 5413 6.072230 GCAAGTCAAATAAGAAAGAAGCCTCT 60.072 38.462 0.00 0.00 0.00 3.69
5274 5414 6.089476 GCAAGTCAAATAAGAAAGAAGCCTC 58.911 40.000 0.00 0.00 0.00 4.70
5276 5416 5.772521 TGCAAGTCAAATAAGAAAGAAGCC 58.227 37.500 0.00 0.00 0.00 4.35
5277 5417 7.086376 TGATGCAAGTCAAATAAGAAAGAAGC 58.914 34.615 0.00 0.00 0.00 3.86
5340 5481 7.744087 AGTCACTTGCATTAAACAGATTGTA 57.256 32.000 0.00 0.00 0.00 2.41
5507 5648 1.226974 CGTCATGGTAGGCCTGTCG 60.227 63.158 17.99 4.72 35.27 4.35
5525 5666 1.803519 CAGCAGCTCGACGACCTTC 60.804 63.158 0.00 0.00 0.00 3.46
5588 5729 2.876581 ACCCCCTCAACATTCAGAAAC 58.123 47.619 0.00 0.00 0.00 2.78
5624 5765 4.681978 AACCGTGACTGCTCGCCC 62.682 66.667 0.00 0.00 0.00 6.13
5627 5768 1.151777 ACAACAACCGTGACTGCTCG 61.152 55.000 0.00 0.00 0.00 5.03
5636 5777 0.392461 AGTGTGCAGACAACAACCGT 60.392 50.000 17.22 0.00 32.49 4.83
5648 5789 1.367471 CGAAGGACCAGAGTGTGCA 59.633 57.895 0.00 0.00 0.00 4.57
5666 5807 2.567049 CGAGACGACCCTGACACC 59.433 66.667 0.00 0.00 0.00 4.16
5712 5853 2.027385 GGGGAGATGGAAAACAGATGC 58.973 52.381 0.00 0.00 0.00 3.91
5739 5880 6.428385 AAACAGATTCTTCGCAGGAATAAG 57.572 37.500 0.00 0.00 34.09 1.73
5913 6056 4.389992 CACAACTTACAGCATCGACAGAAT 59.610 41.667 0.00 0.00 0.00 2.40
5925 6068 3.102052 ACACGGTACCACAACTTACAG 57.898 47.619 13.54 0.00 0.00 2.74
6154 6300 1.251251 GTGCTGGTGGATCTTTTGCT 58.749 50.000 0.00 0.00 0.00 3.91
6184 6330 0.320374 CTTCTGGTTGACCCTGCGTA 59.680 55.000 0.00 0.00 34.29 4.42
6195 6341 0.956633 TCGTGTAGCGTCTTCTGGTT 59.043 50.000 0.00 0.00 42.13 3.67
6284 6431 0.534873 TCAATCGATTCCCAGTGCGA 59.465 50.000 7.92 0.00 37.17 5.10
6316 6463 1.089481 GCGATTCACGGCTCCAATGA 61.089 55.000 0.00 0.00 42.83 2.57
6451 6598 7.824779 GCCTTTCAACTAGGAGAATTTCTCTTA 59.175 37.037 22.34 18.64 42.95 2.10
6536 6685 7.743104 ACTAGTCGAAAGCAATGTAATTCAAG 58.257 34.615 0.00 0.00 31.22 3.02
6554 6703 5.068723 TCTCCCCAAATTAAGCTACTAGTCG 59.931 44.000 0.00 0.00 0.00 4.18
6614 6763 6.635030 TCAGAAAGAAAGAAAAAGGGCTAC 57.365 37.500 0.00 0.00 0.00 3.58
6656 6805 7.746475 CCGTAAGCTTTTCTCAAAGAACTATTG 59.254 37.037 3.20 0.00 41.97 1.90
6657 6806 7.573283 GCCGTAAGCTTTTCTCAAAGAACTATT 60.573 37.037 3.20 0.00 41.97 1.73
6699 6848 1.471119 AGAAGACAATGCTGCATGGG 58.529 50.000 20.50 15.73 0.00 4.00
6781 6930 4.139038 CCTAAGGTTTTCACCCGAAAGAA 58.861 43.478 0.00 0.00 45.63 2.52
6859 7008 1.310933 GCATGTGTGAGGGCCTTCAG 61.311 60.000 19.41 7.27 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.