Multiple sequence alignment - TraesCS3B01G111900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G111900 chr3B 100.000 3182 0 0 1 3182 78234078 78230897 0.000000e+00 5877
1 TraesCS3B01G111900 chr3B 93.605 344 22 0 2516 2859 223294060 223293717 6.090000e-142 514
2 TraesCS3B01G111900 chr3A 90.144 2567 159 46 10 2527 61321079 61318558 0.000000e+00 3253
3 TraesCS3B01G111900 chr3A 86.589 343 34 8 2846 3182 61318490 61318154 5.010000e-98 368
4 TraesCS3B01G111900 chrUn 90.971 2049 119 28 519 2528 39579924 39577903 0.000000e+00 2699
5 TraesCS3B01G111900 chrUn 92.191 397 28 3 1 397 39580328 39579935 2.770000e-155 558
6 TraesCS3B01G111900 chrUn 87.977 341 29 7 2849 3182 39577833 39577498 2.980000e-105 392
7 TraesCS3B01G111900 chrUn 77.294 643 97 28 3 621 41823884 41823267 1.830000e-87 333
8 TraesCS3B01G111900 chrUn 77.294 643 96 29 3 621 345384577 345383961 1.830000e-87 333
9 TraesCS3B01G111900 chr3D 92.773 1536 85 15 296 1826 48853252 48851738 0.000000e+00 2198
10 TraesCS3B01G111900 chr3D 89.130 644 43 11 1900 2530 48851691 48851062 0.000000e+00 776
11 TraesCS3B01G111900 chr1B 97.714 350 7 1 2519 2867 673503492 673503841 4.540000e-168 601
12 TraesCS3B01G111900 chr1B 95.252 337 16 0 2519 2855 437387914 437388250 4.670000e-148 534
13 TraesCS3B01G111900 chr4B 95.294 340 16 0 2518 2857 48054621 48054282 1.000000e-149 540
14 TraesCS3B01G111900 chr5B 94.379 338 18 1 2519 2855 635175504 635175167 4.710000e-143 518
15 TraesCS3B01G111900 chr5B 93.314 344 22 1 2518 2861 122465967 122465625 1.020000e-139 507
16 TraesCS3B01G111900 chr1A 92.350 366 24 4 2518 2880 108666520 108666156 4.710000e-143 518
17 TraesCS3B01G111900 chr2D 93.567 342 21 1 2516 2856 105964200 105964541 2.830000e-140 508
18 TraesCS3B01G111900 chr7B 92.837 349 23 2 2512 2859 365024805 365024458 3.660000e-139 505
19 TraesCS3B01G111900 chr7B 75.991 429 70 20 1 406 745581110 745580692 1.170000e-44 191
20 TraesCS3B01G111900 chr2B 80.684 673 92 20 1 650 786239815 786239158 3.690000e-134 488
21 TraesCS3B01G111900 chr7D 79.613 672 96 22 3 645 479018729 479018070 8.100000e-121 444
22 TraesCS3B01G111900 chr7D 78.635 674 97 37 1 645 39787280 39786625 1.370000e-108 403
23 TraesCS3B01G111900 chr5A 79.642 614 104 15 43 648 534068390 534068990 3.790000e-114 422
24 TraesCS3B01G111900 chr5A 82.004 489 75 11 162 646 426466014 426465535 1.370000e-108 403
25 TraesCS3B01G111900 chr5A 78.064 661 109 28 1 633 699688255 699687603 4.980000e-103 385
26 TraesCS3B01G111900 chr6D 82.724 492 65 17 162 647 84289591 84289114 1.360000e-113 420
27 TraesCS3B01G111900 chr5D 77.844 668 108 27 1 641 560377522 560378176 8.330000e-101 377
28 TraesCS3B01G111900 chr4A 79.482 502 73 11 1 500 741433823 741433350 2.370000e-86 329


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G111900 chr3B 78230897 78234078 3181 True 5877.000000 5877 100.000000 1 3182 1 chr3B.!!$R1 3181
1 TraesCS3B01G111900 chr3A 61318154 61321079 2925 True 1810.500000 3253 88.366500 10 3182 2 chr3A.!!$R1 3172
2 TraesCS3B01G111900 chrUn 39577498 39580328 2830 True 1216.333333 2699 90.379667 1 3182 3 chrUn.!!$R3 3181
3 TraesCS3B01G111900 chrUn 41823267 41823884 617 True 333.000000 333 77.294000 3 621 1 chrUn.!!$R1 618
4 TraesCS3B01G111900 chrUn 345383961 345384577 616 True 333.000000 333 77.294000 3 621 1 chrUn.!!$R2 618
5 TraesCS3B01G111900 chr3D 48851062 48853252 2190 True 1487.000000 2198 90.951500 296 2530 2 chr3D.!!$R1 2234
6 TraesCS3B01G111900 chr2B 786239158 786239815 657 True 488.000000 488 80.684000 1 650 1 chr2B.!!$R1 649
7 TraesCS3B01G111900 chr7D 479018070 479018729 659 True 444.000000 444 79.613000 3 645 1 chr7D.!!$R2 642
8 TraesCS3B01G111900 chr7D 39786625 39787280 655 True 403.000000 403 78.635000 1 645 1 chr7D.!!$R1 644
9 TraesCS3B01G111900 chr5A 534068390 534068990 600 False 422.000000 422 79.642000 43 648 1 chr5A.!!$F1 605
10 TraesCS3B01G111900 chr5A 699687603 699688255 652 True 385.000000 385 78.064000 1 633 1 chr5A.!!$R2 632
11 TraesCS3B01G111900 chr5D 560377522 560378176 654 False 377.000000 377 77.844000 1 641 1 chr5D.!!$F1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 847 1.340017 GCAACTTCTACTGGGCCATGA 60.34 52.381 6.72 2.98 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2558 2731 0.10412 TCTGTGTCTTGGTCACCGTG 59.896 55.0 0.0 0.0 35.25 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 213 7.961827 ACATTTTGTACTGTTTGCAAACATTTG 59.038 29.630 37.51 29.14 46.71 2.32
548 662 9.535878 TTAGAAACATATTTTGAACCCACAAAC 57.464 29.630 0.00 0.00 39.08 2.93
549 663 6.989759 AGAAACATATTTTGAACCCACAAACC 59.010 34.615 0.00 0.00 39.08 3.27
558 673 5.476091 TGAACCCACAAACCCATTTTATC 57.524 39.130 0.00 0.00 0.00 1.75
726 847 1.340017 GCAACTTCTACTGGGCCATGA 60.340 52.381 6.72 2.98 0.00 3.07
909 1033 2.582498 CTCTTTCTACGCCCGCGG 60.582 66.667 21.04 21.04 44.69 6.46
1008 1132 4.148825 ACCTCAGCGATGGCGTCC 62.149 66.667 0.00 0.00 46.35 4.79
1009 1133 3.842923 CCTCAGCGATGGCGTCCT 61.843 66.667 0.00 0.00 46.35 3.85
1185 1318 1.078143 GCTCTTCGTCAAGGCCCAT 60.078 57.895 0.00 0.00 0.00 4.00
1459 1592 1.165270 GTATGCGGGTTTGCTGAAGT 58.835 50.000 0.00 0.00 35.36 3.01
1524 1657 0.976641 CCACAGGAGTCTACAAGGCA 59.023 55.000 0.00 0.00 0.00 4.75
1530 1663 1.473434 GGAGTCTACAAGGCATTCCGG 60.473 57.143 0.00 0.00 37.47 5.14
1552 1685 1.301677 CCTTGAAGTTCGCCCTCTGC 61.302 60.000 0.00 0.00 0.00 4.26
1553 1686 1.301677 CTTGAAGTTCGCCCTCTGCC 61.302 60.000 0.00 0.00 36.24 4.85
1555 1688 1.003233 GAAGTTCGCCCTCTGCCTT 60.003 57.895 0.00 0.00 36.24 4.35
1559 1692 3.589654 TTCGCCCTCTGCCTTGTCG 62.590 63.158 0.00 0.00 36.24 4.35
1585 1718 2.294512 CAGCTATGCGAGGTCATGACTA 59.705 50.000 24.50 7.81 31.94 2.59
1645 1778 2.434359 CTCCGGGCCGTGTCTTTC 60.434 66.667 26.32 0.00 0.00 2.62
1648 1781 4.367023 CGGGCCGTGTCTTTCCGA 62.367 66.667 19.97 0.00 42.94 4.55
1668 1801 1.155889 ATCACACGATGAAAAGCGCA 58.844 45.000 11.47 0.00 41.93 6.09
1714 1847 6.464895 TTTTGATGGATTTTTCGAACATGC 57.535 33.333 0.00 0.00 0.00 4.06
1719 1852 4.484236 TGGATTTTTCGAACATGCATCAC 58.516 39.130 0.00 0.00 0.00 3.06
1720 1853 3.543494 GGATTTTTCGAACATGCATCACG 59.457 43.478 0.00 3.16 0.00 4.35
1721 1854 3.887339 TTTTTCGAACATGCATCACGA 57.113 38.095 13.01 13.01 0.00 4.35
1722 1855 3.887339 TTTTCGAACATGCATCACGAA 57.113 38.095 20.43 20.43 40.30 3.85
1723 1856 4.418013 TTTTCGAACATGCATCACGAAT 57.582 36.364 23.02 0.87 41.30 3.34
1724 1857 5.538067 TTTTCGAACATGCATCACGAATA 57.462 34.783 23.02 18.31 41.30 1.75
1817 1950 1.418264 TGATGGTCCGGAACAAGTCAA 59.582 47.619 29.10 7.59 0.00 3.18
1826 1959 3.502211 CCGGAACAAGTCAACAGCTTATT 59.498 43.478 0.00 0.00 0.00 1.40
1853 2001 0.323542 GTCTTCGAGGACCCCAGAGA 60.324 60.000 16.35 0.00 0.00 3.10
1898 2046 2.507407 TTGAATGGGTCCTTAGTGGC 57.493 50.000 0.00 0.00 35.26 5.01
1902 2050 4.484872 GGGTCCTTAGTGGCGGCC 62.485 72.222 13.32 13.32 35.26 6.13
1915 2063 2.189499 GCGGCCCAGGTTCATCATC 61.189 63.158 0.00 0.00 0.00 2.92
2015 2163 2.933495 TACCGACGTGAGGATCTTTG 57.067 50.000 13.03 0.00 34.92 2.77
2228 2379 9.476202 TGAGTACTGTATTTGTATGCACATATC 57.524 33.333 0.00 0.00 33.76 1.63
2248 2400 2.311841 TCTACCATGGGTGAGAGTGAGA 59.688 50.000 18.09 1.54 36.19 3.27
2252 2404 2.428890 CCATGGGTGAGAGTGAGACTAC 59.571 54.545 2.85 0.00 0.00 2.73
2253 2405 1.822506 TGGGTGAGAGTGAGACTACG 58.177 55.000 0.00 0.00 0.00 3.51
2260 2414 4.632251 GTGAGAGTGAGACTACGAATGAGA 59.368 45.833 0.00 0.00 0.00 3.27
2283 2437 3.059352 AGCCAGTTCTAAGCGTCATTT 57.941 42.857 0.00 0.00 0.00 2.32
2291 2445 7.360861 CCAGTTCTAAGCGTCATTTTCAATACA 60.361 37.037 0.00 0.00 0.00 2.29
2296 2450 8.511321 TCTAAGCGTCATTTTCAATACACAATT 58.489 29.630 0.00 0.00 0.00 2.32
2382 2555 8.562892 GCTGATGCTATAACAACTAACAATGAT 58.437 33.333 0.00 0.00 36.03 2.45
2405 2578 9.878667 TGATATCTAGTCGATTGTTGGTTTAAA 57.121 29.630 3.98 0.00 33.48 1.52
2440 2613 8.364142 AGTAGACCTTCTAAATAATAGCTGCTG 58.636 37.037 13.43 0.00 29.58 4.41
2441 2614 7.366847 AGACCTTCTAAATAATAGCTGCTGA 57.633 36.000 13.43 0.00 0.00 4.26
2445 2618 7.877097 ACCTTCTAAATAATAGCTGCTGATCAG 59.123 37.037 18.84 18.84 45.62 2.90
2446 2619 7.877097 CCTTCTAAATAATAGCTGCTGATCAGT 59.123 37.037 23.38 6.69 44.66 3.41
2447 2620 8.599055 TTCTAAATAATAGCTGCTGATCAGTG 57.401 34.615 23.38 16.91 44.66 3.66
2448 2621 5.686159 AAATAATAGCTGCTGATCAGTGC 57.314 39.130 25.12 25.12 44.66 4.40
2449 2622 1.964552 AATAGCTGCTGATCAGTGCC 58.035 50.000 27.22 15.88 44.66 5.01
2450 2623 1.129917 ATAGCTGCTGATCAGTGCCT 58.870 50.000 27.22 20.41 44.66 4.75
2451 2624 0.463204 TAGCTGCTGATCAGTGCCTC 59.537 55.000 27.22 12.81 44.66 4.70
2452 2625 2.172372 GCTGCTGATCAGTGCCTCG 61.172 63.158 23.38 7.45 44.66 4.63
2461 2634 1.739562 CAGTGCCTCGCTGGAGTTC 60.740 63.158 0.00 0.00 38.21 3.01
2469 2642 0.318441 TCGCTGGAGTTCTGTGAAGG 59.682 55.000 0.00 0.00 32.21 3.46
2507 2680 5.104735 GGATATACTGCCATCTTAGGGAAGG 60.105 48.000 0.00 0.00 35.14 3.46
2523 2696 3.017442 GGAAGGAACTGGCAAATACTCC 58.983 50.000 0.00 0.00 40.86 3.85
2530 2703 0.988832 TGGCAAATACTCCCTCCGTT 59.011 50.000 0.00 0.00 0.00 4.44
2531 2704 1.065709 TGGCAAATACTCCCTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
2533 2706 1.209747 GCAAATACTCCCTCCGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
2534 2707 2.355818 GCAAATACTCCCTCCGTTCCTT 60.356 50.000 0.00 0.00 0.00 3.36
2535 2708 3.872630 GCAAATACTCCCTCCGTTCCTTT 60.873 47.826 0.00 0.00 0.00 3.11
2562 2735 4.712122 AGGTGTATTATTTTTGGCACGG 57.288 40.909 0.00 0.00 0.00 4.94
2563 2736 4.083565 AGGTGTATTATTTTTGGCACGGT 58.916 39.130 0.00 0.00 0.00 4.83
2564 2737 4.082463 AGGTGTATTATTTTTGGCACGGTG 60.082 41.667 3.15 3.15 0.00 4.94
2566 2739 4.854839 GTGTATTATTTTTGGCACGGTGAC 59.145 41.667 13.29 10.30 0.00 3.67
2568 2741 1.982660 TATTTTTGGCACGGTGACCA 58.017 45.000 12.26 14.98 0.00 4.02
2570 2743 0.457851 TTTTTGGCACGGTGACCAAG 59.542 50.000 25.13 0.00 46.20 3.61
2572 2745 1.098712 TTTGGCACGGTGACCAAGAC 61.099 55.000 25.13 0.00 46.20 3.01
2574 2747 2.251642 GGCACGGTGACCAAGACAC 61.252 63.158 13.29 0.00 37.51 3.67
2575 2748 1.522806 GCACGGTGACCAAGACACA 60.523 57.895 13.29 0.00 39.65 3.72
2577 2750 0.104120 CACGGTGACCAAGACACAGA 59.896 55.000 0.74 0.00 39.65 3.41
2578 2751 0.828022 ACGGTGACCAAGACACAGAA 59.172 50.000 1.11 0.00 39.65 3.02
2582 2755 4.253685 CGGTGACCAAGACACAGAATTAT 58.746 43.478 1.11 0.00 39.65 1.28
2584 2757 5.520288 CGGTGACCAAGACACAGAATTATAG 59.480 44.000 1.11 0.00 39.65 1.31
2585 2758 6.627287 CGGTGACCAAGACACAGAATTATAGA 60.627 42.308 1.11 0.00 39.65 1.98
2586 2759 6.535508 GGTGACCAAGACACAGAATTATAGAC 59.464 42.308 0.00 0.00 39.65 2.59
2587 2760 7.097192 GTGACCAAGACACAGAATTATAGACA 58.903 38.462 0.00 0.00 38.05 3.41
2588 2761 7.766278 GTGACCAAGACACAGAATTATAGACAT 59.234 37.037 0.00 0.00 38.05 3.06
2591 2764 8.103305 ACCAAGACACAGAATTATAGACATGTT 58.897 33.333 0.00 0.00 0.00 2.71
2592 2765 9.599866 CCAAGACACAGAATTATAGACATGTTA 57.400 33.333 0.00 0.00 0.00 2.41
2594 2767 9.823647 AAGACACAGAATTATAGACATGTTAGG 57.176 33.333 0.00 0.00 0.00 2.69
2595 2768 9.201989 AGACACAGAATTATAGACATGTTAGGA 57.798 33.333 0.00 0.00 0.00 2.94
2596 2769 9.250624 GACACAGAATTATAGACATGTTAGGAC 57.749 37.037 0.00 0.00 0.00 3.85
2597 2770 7.921214 ACACAGAATTATAGACATGTTAGGACG 59.079 37.037 0.00 0.00 0.00 4.79
2598 2771 8.135529 CACAGAATTATAGACATGTTAGGACGA 58.864 37.037 0.00 0.00 0.00 4.20
2599 2772 8.692710 ACAGAATTATAGACATGTTAGGACGAA 58.307 33.333 0.00 0.00 0.00 3.85
2600 2773 9.529325 CAGAATTATAGACATGTTAGGACGAAA 57.471 33.333 0.00 0.00 0.00 3.46
2605 2778 9.754382 TTATAGACATGTTAGGACGAAATTACC 57.246 33.333 0.00 0.00 0.00 2.85
2606 2779 5.425630 AGACATGTTAGGACGAAATTACCC 58.574 41.667 0.00 0.00 0.00 3.69
2607 2780 5.189145 AGACATGTTAGGACGAAATTACCCT 59.811 40.000 0.00 0.00 0.00 4.34
2608 2781 5.812286 ACATGTTAGGACGAAATTACCCTT 58.188 37.500 0.00 0.00 0.00 3.95
2609 2782 5.646360 ACATGTTAGGACGAAATTACCCTTG 59.354 40.000 0.00 0.00 0.00 3.61
2610 2783 5.486735 TGTTAGGACGAAATTACCCTTGA 57.513 39.130 0.00 0.00 0.00 3.02
2611 2784 5.867330 TGTTAGGACGAAATTACCCTTGAA 58.133 37.500 0.00 0.00 0.00 2.69
2612 2785 6.297582 TGTTAGGACGAAATTACCCTTGAAA 58.702 36.000 0.00 0.00 0.00 2.69
2613 2786 6.771749 TGTTAGGACGAAATTACCCTTGAAAA 59.228 34.615 0.00 0.00 0.00 2.29
2614 2787 7.284944 TGTTAGGACGAAATTACCCTTGAAAAA 59.715 33.333 0.00 0.00 0.00 1.94
2615 2788 6.911250 AGGACGAAATTACCCTTGAAAAAT 57.089 33.333 0.00 0.00 0.00 1.82
2616 2789 7.297936 AGGACGAAATTACCCTTGAAAAATT 57.702 32.000 0.00 0.00 0.00 1.82
2617 2790 7.732025 AGGACGAAATTACCCTTGAAAAATTT 58.268 30.769 0.00 0.00 34.98 1.82
2618 2791 8.862085 AGGACGAAATTACCCTTGAAAAATTTA 58.138 29.630 0.00 0.00 33.03 1.40
2619 2792 9.647797 GGACGAAATTACCCTTGAAAAATTTAT 57.352 29.630 0.00 0.00 33.03 1.40
2629 2802 8.539544 ACCCTTGAAAAATTTATTGGATAGTGG 58.460 33.333 0.00 0.00 0.00 4.00
2630 2803 7.495606 CCCTTGAAAAATTTATTGGATAGTGGC 59.504 37.037 0.00 0.00 0.00 5.01
2631 2804 8.040132 CCTTGAAAAATTTATTGGATAGTGGCA 58.960 33.333 0.00 0.00 0.00 4.92
2632 2805 9.434420 CTTGAAAAATTTATTGGATAGTGGCAA 57.566 29.630 0.00 0.00 0.00 4.52
2633 2806 9.434420 TTGAAAAATTTATTGGATAGTGGCAAG 57.566 29.630 0.00 0.00 0.00 4.01
2634 2807 8.592809 TGAAAAATTTATTGGATAGTGGCAAGT 58.407 29.630 0.00 0.00 0.00 3.16
2640 2813 8.815565 TTTATTGGATAGTGGCAAGTAAATCA 57.184 30.769 0.00 0.00 0.00 2.57
2641 2814 6.949352 ATTGGATAGTGGCAAGTAAATCAG 57.051 37.500 0.00 0.00 0.00 2.90
2642 2815 5.435686 TGGATAGTGGCAAGTAAATCAGT 57.564 39.130 0.00 0.00 0.00 3.41
2643 2816 5.815581 TGGATAGTGGCAAGTAAATCAGTT 58.184 37.500 0.00 0.00 0.00 3.16
2644 2817 6.953101 TGGATAGTGGCAAGTAAATCAGTTA 58.047 36.000 0.00 0.00 0.00 2.24
2645 2818 7.398829 TGGATAGTGGCAAGTAAATCAGTTAA 58.601 34.615 0.00 0.00 0.00 2.01
2646 2819 8.052748 TGGATAGTGGCAAGTAAATCAGTTAAT 58.947 33.333 0.00 0.00 0.00 1.40
2647 2820 8.560374 GGATAGTGGCAAGTAAATCAGTTAATC 58.440 37.037 0.00 0.00 0.00 1.75
2648 2821 6.422776 AGTGGCAAGTAAATCAGTTAATCG 57.577 37.500 0.00 0.00 0.00 3.34
2649 2822 6.170506 AGTGGCAAGTAAATCAGTTAATCGA 58.829 36.000 0.00 0.00 0.00 3.59
2650 2823 6.313905 AGTGGCAAGTAAATCAGTTAATCGAG 59.686 38.462 0.00 0.00 0.00 4.04
2651 2824 5.584649 TGGCAAGTAAATCAGTTAATCGAGG 59.415 40.000 0.00 0.00 0.00 4.63
2652 2825 5.815740 GGCAAGTAAATCAGTTAATCGAGGA 59.184 40.000 0.00 0.00 0.00 3.71
2653 2826 6.315393 GGCAAGTAAATCAGTTAATCGAGGAA 59.685 38.462 0.00 0.00 0.00 3.36
2654 2827 7.148306 GGCAAGTAAATCAGTTAATCGAGGAAA 60.148 37.037 0.00 0.00 0.00 3.13
2655 2828 7.905493 GCAAGTAAATCAGTTAATCGAGGAAAG 59.095 37.037 0.00 0.00 0.00 2.62
2656 2829 8.936864 CAAGTAAATCAGTTAATCGAGGAAAGT 58.063 33.333 0.00 0.00 0.00 2.66
2669 2842 8.764524 AATCGAGGAAAGTATAAGATACATGC 57.235 34.615 0.00 0.00 0.00 4.06
2670 2843 7.284919 TCGAGGAAAGTATAAGATACATGCA 57.715 36.000 0.00 0.00 0.00 3.96
2671 2844 7.722363 TCGAGGAAAGTATAAGATACATGCAA 58.278 34.615 0.00 0.00 0.00 4.08
2672 2845 8.367911 TCGAGGAAAGTATAAGATACATGCAAT 58.632 33.333 0.00 0.00 0.00 3.56
2673 2846 8.651588 CGAGGAAAGTATAAGATACATGCAATC 58.348 37.037 0.00 0.00 0.00 2.67
2674 2847 8.539770 AGGAAAGTATAAGATACATGCAATCG 57.460 34.615 0.00 0.00 0.00 3.34
2675 2848 8.367911 AGGAAAGTATAAGATACATGCAATCGA 58.632 33.333 0.00 0.00 0.00 3.59
2676 2849 8.436200 GGAAAGTATAAGATACATGCAATCGAC 58.564 37.037 0.00 0.00 0.00 4.20
2677 2850 8.887036 AAAGTATAAGATACATGCAATCGACA 57.113 30.769 0.00 0.00 0.00 4.35
2678 2851 7.875316 AGTATAAGATACATGCAATCGACAC 57.125 36.000 0.00 0.00 0.00 3.67
2679 2852 7.433680 AGTATAAGATACATGCAATCGACACA 58.566 34.615 0.00 0.00 0.00 3.72
2680 2853 6.775939 ATAAGATACATGCAATCGACACAG 57.224 37.500 0.00 0.00 0.00 3.66
2681 2854 4.391405 AGATACATGCAATCGACACAGA 57.609 40.909 0.00 0.00 0.00 3.41
2682 2855 4.366586 AGATACATGCAATCGACACAGAG 58.633 43.478 0.00 0.00 0.00 3.35
2683 2856 2.749280 ACATGCAATCGACACAGAGA 57.251 45.000 0.00 0.00 0.00 3.10
2684 2857 3.257469 ACATGCAATCGACACAGAGAT 57.743 42.857 0.00 0.00 0.00 2.75
2685 2858 4.391405 ACATGCAATCGACACAGAGATA 57.609 40.909 0.00 0.00 0.00 1.98
2686 2859 4.115516 ACATGCAATCGACACAGAGATAC 58.884 43.478 0.00 0.00 0.00 2.24
2687 2860 4.142071 ACATGCAATCGACACAGAGATACT 60.142 41.667 0.00 0.00 0.00 2.12
2688 2861 4.456280 TGCAATCGACACAGAGATACTT 57.544 40.909 0.00 0.00 0.00 2.24
2689 2862 4.820897 TGCAATCGACACAGAGATACTTT 58.179 39.130 0.00 0.00 0.00 2.66
2690 2863 4.864806 TGCAATCGACACAGAGATACTTTC 59.135 41.667 0.00 0.00 0.00 2.62
2691 2864 4.268884 GCAATCGACACAGAGATACTTTCC 59.731 45.833 0.00 0.00 0.00 3.13
2692 2865 5.655488 CAATCGACACAGAGATACTTTCCT 58.345 41.667 0.00 0.00 0.00 3.36
2693 2866 5.923733 ATCGACACAGAGATACTTTCCTT 57.076 39.130 0.00 0.00 0.00 3.36
2694 2867 5.312120 TCGACACAGAGATACTTTCCTTC 57.688 43.478 0.00 0.00 0.00 3.46
2695 2868 5.010933 TCGACACAGAGATACTTTCCTTCT 58.989 41.667 0.00 0.00 0.00 2.85
2696 2869 5.477291 TCGACACAGAGATACTTTCCTTCTT 59.523 40.000 0.00 0.00 0.00 2.52
2697 2870 6.015350 TCGACACAGAGATACTTTCCTTCTTT 60.015 38.462 0.00 0.00 0.00 2.52
2698 2871 6.647067 CGACACAGAGATACTTTCCTTCTTTT 59.353 38.462 0.00 0.00 0.00 2.27
2699 2872 7.359598 CGACACAGAGATACTTTCCTTCTTTTG 60.360 40.741 0.00 0.00 0.00 2.44
2700 2873 6.205658 ACACAGAGATACTTTCCTTCTTTTGC 59.794 38.462 0.00 0.00 0.00 3.68
2701 2874 6.429385 CACAGAGATACTTTCCTTCTTTTGCT 59.571 38.462 0.00 0.00 0.00 3.91
2702 2875 7.604164 CACAGAGATACTTTCCTTCTTTTGCTA 59.396 37.037 0.00 0.00 0.00 3.49
2703 2876 7.604545 ACAGAGATACTTTCCTTCTTTTGCTAC 59.395 37.037 0.00 0.00 0.00 3.58
2704 2877 7.604164 CAGAGATACTTTCCTTCTTTTGCTACA 59.396 37.037 0.00 0.00 0.00 2.74
2705 2878 8.157476 AGAGATACTTTCCTTCTTTTGCTACAA 58.843 33.333 0.00 0.00 0.00 2.41
2706 2879 8.329203 AGATACTTTCCTTCTTTTGCTACAAG 57.671 34.615 0.00 0.00 0.00 3.16
2707 2880 8.157476 AGATACTTTCCTTCTTTTGCTACAAGA 58.843 33.333 0.00 0.00 0.00 3.02
2708 2881 8.691661 ATACTTTCCTTCTTTTGCTACAAGAA 57.308 30.769 5.71 5.71 37.82 2.52
2716 2889 6.121776 TCTTTTGCTACAAGAAGGGATACA 57.878 37.500 0.00 0.00 39.74 2.29
2717 2890 6.173339 TCTTTTGCTACAAGAAGGGATACAG 58.827 40.000 0.00 0.00 39.74 2.74
2718 2891 5.755409 TTTGCTACAAGAAGGGATACAGA 57.245 39.130 0.00 0.00 39.74 3.41
2719 2892 4.737855 TGCTACAAGAAGGGATACAGAC 57.262 45.455 0.00 0.00 39.74 3.51
2720 2893 4.093743 TGCTACAAGAAGGGATACAGACA 58.906 43.478 0.00 0.00 39.74 3.41
2721 2894 4.530553 TGCTACAAGAAGGGATACAGACAA 59.469 41.667 0.00 0.00 39.74 3.18
2722 2895 5.189736 TGCTACAAGAAGGGATACAGACAAT 59.810 40.000 0.00 0.00 39.74 2.71
2723 2896 5.755861 GCTACAAGAAGGGATACAGACAATC 59.244 44.000 0.00 0.00 39.74 2.67
2724 2897 5.762179 ACAAGAAGGGATACAGACAATCA 57.238 39.130 0.00 0.00 39.74 2.57
2725 2898 5.738909 ACAAGAAGGGATACAGACAATCAG 58.261 41.667 0.00 0.00 39.74 2.90
2726 2899 5.121811 CAAGAAGGGATACAGACAATCAGG 58.878 45.833 0.00 0.00 39.74 3.86
2727 2900 4.624913 AGAAGGGATACAGACAATCAGGA 58.375 43.478 0.00 0.00 39.74 3.86
2728 2901 4.653341 AGAAGGGATACAGACAATCAGGAG 59.347 45.833 0.00 0.00 39.74 3.69
2729 2902 4.271807 AGGGATACAGACAATCAGGAGA 57.728 45.455 0.00 0.00 39.74 3.71
2730 2903 4.222336 AGGGATACAGACAATCAGGAGAG 58.778 47.826 0.00 0.00 39.74 3.20
2731 2904 4.078922 AGGGATACAGACAATCAGGAGAGA 60.079 45.833 0.00 0.00 39.74 3.10
2732 2905 4.280677 GGGATACAGACAATCAGGAGAGAG 59.719 50.000 0.00 0.00 39.74 3.20
2733 2906 5.136828 GGATACAGACAATCAGGAGAGAGA 58.863 45.833 0.00 0.00 0.00 3.10
2734 2907 5.774690 GGATACAGACAATCAGGAGAGAGAT 59.225 44.000 0.00 0.00 0.00 2.75
2735 2908 6.945435 GGATACAGACAATCAGGAGAGAGATA 59.055 42.308 0.00 0.00 0.00 1.98
2736 2909 7.094377 GGATACAGACAATCAGGAGAGAGATAC 60.094 44.444 0.00 0.00 0.00 2.24
2737 2910 5.765510 ACAGACAATCAGGAGAGAGATACT 58.234 41.667 0.00 0.00 0.00 2.12
2738 2911 6.194235 ACAGACAATCAGGAGAGAGATACTT 58.806 40.000 0.00 0.00 0.00 2.24
2739 2912 6.667414 ACAGACAATCAGGAGAGAGATACTTT 59.333 38.462 0.00 0.00 0.00 2.66
2740 2913 7.147915 ACAGACAATCAGGAGAGAGATACTTTC 60.148 40.741 0.00 0.00 0.00 2.62
2741 2914 6.323739 AGACAATCAGGAGAGAGATACTTTCC 59.676 42.308 0.00 0.00 46.46 3.13
2749 2922 6.953101 GGAGAGAGATACTTTCCCTTTTTCT 58.047 40.000 0.00 0.00 42.11 2.52
2750 2923 7.398829 GGAGAGAGATACTTTCCCTTTTTCTT 58.601 38.462 0.00 0.00 42.11 2.52
2751 2924 8.541234 GGAGAGAGATACTTTCCCTTTTTCTTA 58.459 37.037 0.00 0.00 42.11 2.10
2752 2925 9.945904 GAGAGAGATACTTTCCCTTTTTCTTAA 57.054 33.333 0.00 0.00 0.00 1.85
2753 2926 9.952030 AGAGAGATACTTTCCCTTTTTCTTAAG 57.048 33.333 0.00 0.00 0.00 1.85
2754 2927 9.168451 GAGAGATACTTTCCCTTTTTCTTAAGG 57.832 37.037 1.85 0.00 43.58 2.69
2764 2937 6.025749 CCTTTTTCTTAAGGGCTAACAAGG 57.974 41.667 1.85 4.22 40.86 3.61
2765 2938 5.047306 CCTTTTTCTTAAGGGCTAACAAGGG 60.047 44.000 1.85 0.00 40.86 3.95
2766 2939 5.327737 TTTTCTTAAGGGCTAACAAGGGA 57.672 39.130 1.85 0.00 0.00 4.20
2767 2940 5.327737 TTTCTTAAGGGCTAACAAGGGAA 57.672 39.130 1.85 0.00 0.00 3.97
2768 2941 5.530176 TTCTTAAGGGCTAACAAGGGAAT 57.470 39.130 1.85 0.00 0.00 3.01
2769 2942 5.530176 TCTTAAGGGCTAACAAGGGAATT 57.470 39.130 1.85 0.00 0.00 2.17
2770 2943 6.645884 TCTTAAGGGCTAACAAGGGAATTA 57.354 37.500 1.85 0.00 0.00 1.40
2771 2944 7.220890 TCTTAAGGGCTAACAAGGGAATTAT 57.779 36.000 1.85 0.00 0.00 1.28
2772 2945 7.060421 TCTTAAGGGCTAACAAGGGAATTATG 58.940 38.462 1.85 0.00 0.00 1.90
2773 2946 5.466127 AAGGGCTAACAAGGGAATTATGA 57.534 39.130 0.00 0.00 0.00 2.15
2774 2947 5.053978 AGGGCTAACAAGGGAATTATGAG 57.946 43.478 0.00 0.00 0.00 2.90
2775 2948 4.141158 AGGGCTAACAAGGGAATTATGAGG 60.141 45.833 0.00 0.00 0.00 3.86
2776 2949 4.141251 GGGCTAACAAGGGAATTATGAGGA 60.141 45.833 0.00 0.00 0.00 3.71
2777 2950 5.445964 GGCTAACAAGGGAATTATGAGGAA 58.554 41.667 0.00 0.00 0.00 3.36
2778 2951 6.071320 GGCTAACAAGGGAATTATGAGGAAT 58.929 40.000 0.00 0.00 0.00 3.01
2779 2952 6.551227 GGCTAACAAGGGAATTATGAGGAATT 59.449 38.462 0.00 0.00 0.00 2.17
2780 2953 7.724061 GGCTAACAAGGGAATTATGAGGAATTA 59.276 37.037 0.00 0.00 0.00 1.40
2781 2954 8.787852 GCTAACAAGGGAATTATGAGGAATTAG 58.212 37.037 0.00 0.00 0.00 1.73
2784 2957 8.986929 ACAAGGGAATTATGAGGAATTAGAAG 57.013 34.615 0.00 0.00 0.00 2.85
2785 2958 8.781951 ACAAGGGAATTATGAGGAATTAGAAGA 58.218 33.333 0.00 0.00 0.00 2.87
2786 2959 9.632638 CAAGGGAATTATGAGGAATTAGAAGAA 57.367 33.333 0.00 0.00 0.00 2.52
2790 2963 9.905171 GGAATTATGAGGAATTAGAAGAAATGC 57.095 33.333 0.00 0.00 0.00 3.56
2793 2966 6.705863 ATGAGGAATTAGAAGAAATGCACC 57.294 37.500 0.00 0.00 0.00 5.01
2794 2967 5.819991 TGAGGAATTAGAAGAAATGCACCT 58.180 37.500 0.00 0.00 0.00 4.00
2795 2968 6.248433 TGAGGAATTAGAAGAAATGCACCTT 58.752 36.000 0.00 0.00 0.00 3.50
2796 2969 7.402054 TGAGGAATTAGAAGAAATGCACCTTA 58.598 34.615 0.00 0.00 0.00 2.69
2797 2970 7.336931 TGAGGAATTAGAAGAAATGCACCTTAC 59.663 37.037 0.00 0.00 0.00 2.34
2798 2971 7.175104 AGGAATTAGAAGAAATGCACCTTACA 58.825 34.615 0.00 0.00 0.00 2.41
2799 2972 7.836183 AGGAATTAGAAGAAATGCACCTTACAT 59.164 33.333 0.00 0.00 0.00 2.29
2800 2973 8.470002 GGAATTAGAAGAAATGCACCTTACATT 58.530 33.333 0.00 0.00 39.38 2.71
2801 2974 9.508567 GAATTAGAAGAAATGCACCTTACATTC 57.491 33.333 0.00 0.00 36.74 2.67
2802 2975 8.814038 ATTAGAAGAAATGCACCTTACATTCT 57.186 30.769 0.00 0.00 36.74 2.40
2803 2976 6.506500 AGAAGAAATGCACCTTACATTCTG 57.493 37.500 0.00 0.00 36.74 3.02
2804 2977 5.416952 AGAAGAAATGCACCTTACATTCTGG 59.583 40.000 0.00 0.00 36.74 3.86
2805 2978 4.922206 AGAAATGCACCTTACATTCTGGA 58.078 39.130 0.00 0.00 36.74 3.86
2806 2979 5.324409 AGAAATGCACCTTACATTCTGGAA 58.676 37.500 0.00 0.00 36.74 3.53
2807 2980 5.954150 AGAAATGCACCTTACATTCTGGAAT 59.046 36.000 0.00 0.00 36.74 3.01
2808 2981 6.438425 AGAAATGCACCTTACATTCTGGAATT 59.562 34.615 0.00 0.00 36.74 2.17
2809 2982 6.610075 AATGCACCTTACATTCTGGAATTT 57.390 33.333 0.00 0.00 32.28 1.82
2810 2983 6.610075 ATGCACCTTACATTCTGGAATTTT 57.390 33.333 0.00 0.00 0.00 1.82
2811 2984 7.716799 ATGCACCTTACATTCTGGAATTTTA 57.283 32.000 0.00 0.00 0.00 1.52
2812 2985 7.716799 TGCACCTTACATTCTGGAATTTTAT 57.283 32.000 0.00 0.00 0.00 1.40
2813 2986 7.771183 TGCACCTTACATTCTGGAATTTTATC 58.229 34.615 0.00 0.00 0.00 1.75
2814 2987 7.395772 TGCACCTTACATTCTGGAATTTTATCA 59.604 33.333 0.00 0.00 0.00 2.15
2815 2988 8.250332 GCACCTTACATTCTGGAATTTTATCAA 58.750 33.333 0.00 0.00 0.00 2.57
2989 3167 4.333926 CAGATTTACTGGAGCTTACTTGGC 59.666 45.833 0.00 0.00 42.39 4.52
3001 3179 7.067008 TGGAGCTTACTTGGCATTAATCTTTAC 59.933 37.037 0.00 0.00 0.00 2.01
3012 3191 9.237187 TGGCATTAATCTTTACTGTACATCAAA 57.763 29.630 0.00 0.00 0.00 2.69
3039 3218 7.807433 CAGAATCTTCTAAGTCATATCTCACGG 59.193 40.741 0.00 0.00 35.34 4.94
3050 3229 4.098044 TCATATCTCACGGACTCCACTTTC 59.902 45.833 0.00 0.00 0.00 2.62
3054 3233 3.134081 TCTCACGGACTCCACTTTCTTTT 59.866 43.478 0.00 0.00 0.00 2.27
3055 3234 3.463944 TCACGGACTCCACTTTCTTTTC 58.536 45.455 0.00 0.00 0.00 2.29
3056 3235 3.118555 TCACGGACTCCACTTTCTTTTCA 60.119 43.478 0.00 0.00 0.00 2.69
3058 3237 4.275936 CACGGACTCCACTTTCTTTTCATT 59.724 41.667 0.00 0.00 0.00 2.57
3059 3238 4.515567 ACGGACTCCACTTTCTTTTCATTC 59.484 41.667 0.00 0.00 0.00 2.67
3121 3300 8.959705 ATACCCTAAAATAGTCTAGCAACAAC 57.040 34.615 0.00 0.00 0.00 3.32
3122 3301 6.775708 ACCCTAAAATAGTCTAGCAACAACA 58.224 36.000 0.00 0.00 0.00 3.33
3123 3302 7.228590 ACCCTAAAATAGTCTAGCAACAACAA 58.771 34.615 0.00 0.00 0.00 2.83
3129 3308 7.864108 AATAGTCTAGCAACAACAATGCATA 57.136 32.000 0.00 0.00 46.22 3.14
3131 3310 4.396166 AGTCTAGCAACAACAATGCATACC 59.604 41.667 0.00 0.00 46.22 2.73
3138 3317 6.828273 AGCAACAACAATGCATACCTAGATTA 59.172 34.615 0.00 0.00 46.22 1.75
3165 3344 4.082245 CCATTTGGATGTTAGTGTGGGTTC 60.082 45.833 0.00 0.00 37.39 3.62
3167 3346 3.695830 TGGATGTTAGTGTGGGTTCTC 57.304 47.619 0.00 0.00 0.00 2.87
3170 3350 3.194116 GGATGTTAGTGTGGGTTCTCGTA 59.806 47.826 0.00 0.00 0.00 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 60 9.176460 TCAAGATTGCAAATATGTTCATGAGTA 57.824 29.630 1.71 0.00 0.00 2.59
130 154 9.467258 AACAGTACAAAATGTTCATGAATTCAG 57.533 29.630 12.12 6.44 34.62 3.02
168 213 7.003648 GCGCTGATTCAAGAAAATTGTTAAAC 58.996 34.615 0.00 0.00 0.00 2.01
680 801 1.663695 ATTATTTGACGCACCTCGGG 58.336 50.000 0.00 0.00 43.86 5.14
685 806 5.098893 TGCATAACAATTATTTGACGCACC 58.901 37.500 4.42 0.00 36.64 5.01
695 816 7.201821 GCCCAGTAGAAGTTGCATAACAATTAT 60.202 37.037 0.00 0.00 41.27 1.28
726 847 1.985159 TCAGAATTGGTGTAGCCTGGT 59.015 47.619 0.00 0.00 38.35 4.00
909 1033 1.092345 GGTGAGCTCGAATGAAGCCC 61.092 60.000 9.64 0.00 0.00 5.19
1009 1133 4.394078 CCGCTTGTCCGACGACGA 62.394 66.667 9.28 0.00 42.37 4.20
1041 1171 1.374252 GCCGGCGATGTATTCCGAT 60.374 57.895 12.58 0.00 45.53 4.18
1083 1216 1.216444 GAGACGCAGCAGGATGTCA 59.784 57.895 0.00 0.00 39.31 3.58
1137 1270 4.742649 AGAGAGCGCCACGAGGGA 62.743 66.667 2.29 0.00 40.01 4.20
1236 1369 1.812922 GATGCTGACGCCACAGGAG 60.813 63.158 6.87 0.00 41.09 3.69
1240 1373 2.738139 CACGATGCTGACGCCACA 60.738 61.111 0.00 0.00 34.43 4.17
1242 1375 2.906182 GATCCACGATGCTGACGCCA 62.906 60.000 0.00 0.00 34.43 5.69
1459 1592 4.019411 TGAGTCCATGTATGCCTTTCTTGA 60.019 41.667 0.00 0.00 0.00 3.02
1515 1648 1.065418 AGGAACCGGAATGCCTTGTAG 60.065 52.381 9.46 0.00 0.00 2.74
1524 1657 2.423577 CGAACTTCAAGGAACCGGAAT 58.576 47.619 9.46 0.00 0.00 3.01
1530 1663 1.157585 GAGGGCGAACTTCAAGGAAC 58.842 55.000 0.00 0.00 0.00 3.62
1552 1685 1.153289 ATAGCTGCTGCCGACAAGG 60.153 57.895 13.43 0.00 44.97 3.61
1553 1686 2.012237 CATAGCTGCTGCCGACAAG 58.988 57.895 13.43 0.00 40.80 3.16
1555 1688 2.512286 GCATAGCTGCTGCCGACA 60.512 61.111 13.43 0.00 45.32 4.35
1559 1692 2.971413 CCTCGCATAGCTGCTGCC 60.971 66.667 13.43 0.00 46.65 4.85
1645 1778 2.774007 GCTTTTCATCGTGTGATTCGG 58.226 47.619 0.00 0.00 36.54 4.30
1647 1780 2.169179 GCGCTTTTCATCGTGTGATTC 58.831 47.619 0.00 0.00 36.54 2.52
1648 1781 1.535028 TGCGCTTTTCATCGTGTGATT 59.465 42.857 9.73 0.00 36.54 2.57
1692 1825 5.536260 TGCATGTTCGAAAAATCCATCAAA 58.464 33.333 0.00 0.00 0.00 2.69
1720 1853 4.351874 TGATGGTCCCCTTCGAATATTC 57.648 45.455 5.30 5.30 31.32 1.75
1721 1854 4.788925 TTGATGGTCCCCTTCGAATATT 57.211 40.909 0.00 0.00 31.32 1.28
1722 1855 4.461198 GTTTGATGGTCCCCTTCGAATAT 58.539 43.478 0.00 0.00 34.83 1.28
1723 1856 3.371166 GGTTTGATGGTCCCCTTCGAATA 60.371 47.826 0.00 0.00 34.83 1.75
1724 1857 2.620627 GGTTTGATGGTCCCCTTCGAAT 60.621 50.000 0.00 0.00 34.83 3.34
1733 1866 1.598701 GCTGGCTGGTTTGATGGTCC 61.599 60.000 0.00 0.00 0.00 4.46
1817 1950 4.932200 CGAAGACAGGAAGAAATAAGCTGT 59.068 41.667 0.00 0.00 0.00 4.40
1826 1959 1.893801 GGTCCTCGAAGACAGGAAGAA 59.106 52.381 15.75 0.00 41.94 2.52
1853 2001 4.461119 TCGAGAGAAGCCCCACAT 57.539 55.556 0.00 0.00 37.03 3.21
1898 2046 1.889105 CGATGATGAACCTGGGCCG 60.889 63.158 0.00 0.00 0.00 6.13
1902 2050 3.871594 GAGGTAAACGATGATGAACCTGG 59.128 47.826 0.00 0.00 37.47 4.45
1915 2063 5.277857 AGGTCCATAGATTGAGGTAAACG 57.722 43.478 0.00 0.00 0.00 3.60
2015 2163 6.403878 TCTAACACCAGCAAAGGATAACTAC 58.596 40.000 0.00 0.00 0.00 2.73
2228 2379 2.428890 GTCTCACTCTCACCCATGGTAG 59.571 54.545 11.73 5.33 32.11 3.18
2248 2400 5.361285 AGAACTGGCTTATCTCATTCGTAGT 59.639 40.000 0.00 0.00 0.00 2.73
2252 2404 5.176590 GCTTAGAACTGGCTTATCTCATTCG 59.823 44.000 0.00 0.00 0.00 3.34
2253 2405 5.176590 CGCTTAGAACTGGCTTATCTCATTC 59.823 44.000 0.00 0.00 0.00 2.67
2260 2414 3.887621 TGACGCTTAGAACTGGCTTAT 57.112 42.857 0.00 0.00 0.00 1.73
2437 2610 2.172372 CAGCGAGGCACTGATCAGC 61.172 63.158 22.83 10.56 41.55 4.26
2440 2613 1.227205 CTCCAGCGAGGCACTGATC 60.227 63.158 4.04 0.00 41.55 2.92
2441 2614 1.548357 AACTCCAGCGAGGCACTGAT 61.548 55.000 4.04 0.00 41.55 2.90
2445 2618 1.739562 CAGAACTCCAGCGAGGCAC 60.740 63.158 0.00 0.00 40.77 5.01
2446 2619 2.210013 ACAGAACTCCAGCGAGGCA 61.210 57.895 0.00 0.00 40.77 4.75
2447 2620 1.739562 CACAGAACTCCAGCGAGGC 60.740 63.158 0.00 0.00 40.77 4.70
2448 2621 0.318441 TTCACAGAACTCCAGCGAGG 59.682 55.000 0.00 0.00 40.77 4.63
2449 2622 1.671261 CCTTCACAGAACTCCAGCGAG 60.671 57.143 0.00 0.00 42.32 5.03
2450 2623 0.318441 CCTTCACAGAACTCCAGCGA 59.682 55.000 0.00 0.00 0.00 4.93
2451 2624 0.318441 TCCTTCACAGAACTCCAGCG 59.682 55.000 0.00 0.00 0.00 5.18
2452 2625 1.609320 GGTCCTTCACAGAACTCCAGC 60.609 57.143 0.00 0.00 0.00 4.85
2502 2675 3.017442 GGAGTATTTGCCAGTTCCTTCC 58.983 50.000 0.00 0.00 0.00 3.46
2507 2680 2.644676 GGAGGGAGTATTTGCCAGTTC 58.355 52.381 0.00 0.00 40.38 3.01
2535 2708 8.399425 CGTGCCAAAAATAATACACCTTACATA 58.601 33.333 0.00 0.00 0.00 2.29
2543 2716 4.854839 GTCACCGTGCCAAAAATAATACAC 59.145 41.667 0.00 0.00 0.00 2.90
2547 2720 2.894126 TGGTCACCGTGCCAAAAATAAT 59.106 40.909 10.99 0.00 0.00 1.28
2550 2723 1.068434 CTTGGTCACCGTGCCAAAAAT 59.932 47.619 20.67 0.00 43.29 1.82
2552 2725 0.394488 TCTTGGTCACCGTGCCAAAA 60.394 50.000 20.67 10.94 43.29 2.44
2554 2727 1.525077 GTCTTGGTCACCGTGCCAA 60.525 57.895 19.72 19.72 41.90 4.52
2555 2728 2.110213 GTCTTGGTCACCGTGCCA 59.890 61.111 9.74 9.74 0.00 4.92
2556 2729 2.110213 TGTCTTGGTCACCGTGCC 59.890 61.111 0.00 0.00 0.00 5.01
2557 2730 1.498865 CTGTGTCTTGGTCACCGTGC 61.499 60.000 0.00 0.00 35.25 5.34
2558 2731 0.104120 TCTGTGTCTTGGTCACCGTG 59.896 55.000 0.00 0.00 35.25 4.94
2560 2733 2.169832 ATTCTGTGTCTTGGTCACCG 57.830 50.000 0.00 0.00 35.25 4.94
2562 2735 7.097192 TGTCTATAATTCTGTGTCTTGGTCAC 58.903 38.462 0.00 0.00 36.48 3.67
2563 2736 7.239763 TGTCTATAATTCTGTGTCTTGGTCA 57.760 36.000 0.00 0.00 0.00 4.02
2564 2737 7.766278 ACATGTCTATAATTCTGTGTCTTGGTC 59.234 37.037 0.00 0.00 0.00 4.02
2566 2739 8.498054 AACATGTCTATAATTCTGTGTCTTGG 57.502 34.615 0.00 0.00 0.00 3.61
2568 2741 9.823647 CCTAACATGTCTATAATTCTGTGTCTT 57.176 33.333 0.00 0.00 0.00 3.01
2570 2743 9.250624 GTCCTAACATGTCTATAATTCTGTGTC 57.749 37.037 0.00 0.00 0.00 3.67
2572 2745 8.135529 TCGTCCTAACATGTCTATAATTCTGTG 58.864 37.037 0.00 0.00 0.00 3.66
2574 2747 9.529325 TTTCGTCCTAACATGTCTATAATTCTG 57.471 33.333 0.00 0.00 0.00 3.02
2582 2755 6.381994 AGGGTAATTTCGTCCTAACATGTCTA 59.618 38.462 0.00 0.00 0.00 2.59
2584 2757 5.425630 AGGGTAATTTCGTCCTAACATGTC 58.574 41.667 0.00 0.00 0.00 3.06
2585 2758 5.431179 AGGGTAATTTCGTCCTAACATGT 57.569 39.130 0.00 0.00 0.00 3.21
2586 2759 5.878116 TCAAGGGTAATTTCGTCCTAACATG 59.122 40.000 0.00 0.00 0.00 3.21
2587 2760 6.057321 TCAAGGGTAATTTCGTCCTAACAT 57.943 37.500 0.00 0.00 0.00 2.71
2588 2761 5.486735 TCAAGGGTAATTTCGTCCTAACA 57.513 39.130 0.00 0.00 0.00 2.41
2591 2764 8.411991 AATTTTTCAAGGGTAATTTCGTCCTA 57.588 30.769 0.00 0.00 0.00 2.94
2592 2765 6.911250 ATTTTTCAAGGGTAATTTCGTCCT 57.089 33.333 0.00 0.00 0.00 3.85
2593 2766 7.956420 AAATTTTTCAAGGGTAATTTCGTCC 57.044 32.000 0.00 0.00 0.00 4.79
2603 2776 8.539544 CCACTATCCAATAAATTTTTCAAGGGT 58.460 33.333 0.00 0.00 0.00 4.34
2604 2777 7.495606 GCCACTATCCAATAAATTTTTCAAGGG 59.504 37.037 0.00 0.00 0.00 3.95
2605 2778 8.040132 TGCCACTATCCAATAAATTTTTCAAGG 58.960 33.333 0.00 0.00 0.00 3.61
2606 2779 9.434420 TTGCCACTATCCAATAAATTTTTCAAG 57.566 29.630 0.00 0.00 0.00 3.02
2607 2780 9.434420 CTTGCCACTATCCAATAAATTTTTCAA 57.566 29.630 0.00 0.00 0.00 2.69
2608 2781 8.592809 ACTTGCCACTATCCAATAAATTTTTCA 58.407 29.630 0.00 0.00 0.00 2.69
2614 2787 9.420118 TGATTTACTTGCCACTATCCAATAAAT 57.580 29.630 0.00 0.00 0.00 1.40
2615 2788 8.815565 TGATTTACTTGCCACTATCCAATAAA 57.184 30.769 0.00 0.00 0.00 1.40
2616 2789 8.052748 ACTGATTTACTTGCCACTATCCAATAA 58.947 33.333 0.00 0.00 0.00 1.40
2617 2790 7.573710 ACTGATTTACTTGCCACTATCCAATA 58.426 34.615 0.00 0.00 0.00 1.90
2618 2791 6.426587 ACTGATTTACTTGCCACTATCCAAT 58.573 36.000 0.00 0.00 0.00 3.16
2619 2792 5.815581 ACTGATTTACTTGCCACTATCCAA 58.184 37.500 0.00 0.00 0.00 3.53
2620 2793 5.435686 ACTGATTTACTTGCCACTATCCA 57.564 39.130 0.00 0.00 0.00 3.41
2621 2794 7.859325 TTAACTGATTTACTTGCCACTATCC 57.141 36.000 0.00 0.00 0.00 2.59
2622 2795 8.276325 CGATTAACTGATTTACTTGCCACTATC 58.724 37.037 0.00 0.00 0.00 2.08
2623 2796 7.985184 TCGATTAACTGATTTACTTGCCACTAT 59.015 33.333 0.00 0.00 0.00 2.12
2624 2797 7.324935 TCGATTAACTGATTTACTTGCCACTA 58.675 34.615 0.00 0.00 0.00 2.74
2625 2798 6.170506 TCGATTAACTGATTTACTTGCCACT 58.829 36.000 0.00 0.00 0.00 4.00
2626 2799 6.417191 TCGATTAACTGATTTACTTGCCAC 57.583 37.500 0.00 0.00 0.00 5.01
2627 2800 5.584649 CCTCGATTAACTGATTTACTTGCCA 59.415 40.000 0.00 0.00 0.00 4.92
2628 2801 5.815740 TCCTCGATTAACTGATTTACTTGCC 59.184 40.000 0.00 0.00 0.00 4.52
2629 2802 6.903883 TCCTCGATTAACTGATTTACTTGC 57.096 37.500 0.00 0.00 0.00 4.01
2630 2803 8.936864 ACTTTCCTCGATTAACTGATTTACTTG 58.063 33.333 0.00 0.00 0.00 3.16
2643 2816 9.856488 GCATGTATCTTATACTTTCCTCGATTA 57.144 33.333 0.00 0.00 0.00 1.75
2644 2817 8.367911 TGCATGTATCTTATACTTTCCTCGATT 58.632 33.333 0.00 0.00 0.00 3.34
2645 2818 7.896811 TGCATGTATCTTATACTTTCCTCGAT 58.103 34.615 0.00 0.00 0.00 3.59
2646 2819 7.284919 TGCATGTATCTTATACTTTCCTCGA 57.715 36.000 0.00 0.00 0.00 4.04
2647 2820 7.946655 TTGCATGTATCTTATACTTTCCTCG 57.053 36.000 0.00 0.00 0.00 4.63
2648 2821 8.651588 CGATTGCATGTATCTTATACTTTCCTC 58.348 37.037 0.00 0.00 0.00 3.71
2649 2822 8.367911 TCGATTGCATGTATCTTATACTTTCCT 58.632 33.333 0.00 0.00 0.00 3.36
2650 2823 8.436200 GTCGATTGCATGTATCTTATACTTTCC 58.564 37.037 0.00 0.00 0.00 3.13
2651 2824 8.978539 TGTCGATTGCATGTATCTTATACTTTC 58.021 33.333 0.00 0.00 0.00 2.62
2652 2825 8.765219 GTGTCGATTGCATGTATCTTATACTTT 58.235 33.333 0.00 0.00 0.00 2.66
2653 2826 7.926018 TGTGTCGATTGCATGTATCTTATACTT 59.074 33.333 0.00 0.00 0.00 2.24
2654 2827 7.433680 TGTGTCGATTGCATGTATCTTATACT 58.566 34.615 0.00 0.00 0.00 2.12
2655 2828 7.595130 TCTGTGTCGATTGCATGTATCTTATAC 59.405 37.037 0.00 0.00 0.00 1.47
2656 2829 7.657336 TCTGTGTCGATTGCATGTATCTTATA 58.343 34.615 0.00 0.00 0.00 0.98
2657 2830 6.515832 TCTGTGTCGATTGCATGTATCTTAT 58.484 36.000 0.00 0.00 0.00 1.73
2658 2831 5.901552 TCTGTGTCGATTGCATGTATCTTA 58.098 37.500 0.00 0.00 0.00 2.10
2659 2832 4.758688 TCTGTGTCGATTGCATGTATCTT 58.241 39.130 0.00 0.00 0.00 2.40
2660 2833 4.098501 TCTCTGTGTCGATTGCATGTATCT 59.901 41.667 0.00 0.00 0.00 1.98
2661 2834 4.363138 TCTCTGTGTCGATTGCATGTATC 58.637 43.478 0.00 0.00 0.00 2.24
2662 2835 4.391405 TCTCTGTGTCGATTGCATGTAT 57.609 40.909 0.00 0.00 0.00 2.29
2663 2836 3.866883 TCTCTGTGTCGATTGCATGTA 57.133 42.857 0.00 0.00 0.00 2.29
2664 2837 2.749280 TCTCTGTGTCGATTGCATGT 57.251 45.000 0.00 0.00 0.00 3.21
2665 2838 4.366586 AGTATCTCTGTGTCGATTGCATG 58.633 43.478 0.00 0.00 0.00 4.06
2666 2839 4.662468 AGTATCTCTGTGTCGATTGCAT 57.338 40.909 0.00 0.00 0.00 3.96
2667 2840 4.456280 AAGTATCTCTGTGTCGATTGCA 57.544 40.909 0.00 0.00 0.00 4.08
2668 2841 4.268884 GGAAAGTATCTCTGTGTCGATTGC 59.731 45.833 0.00 0.00 0.00 3.56
2669 2842 5.655488 AGGAAAGTATCTCTGTGTCGATTG 58.345 41.667 0.00 0.00 0.00 2.67
2670 2843 5.923733 AGGAAAGTATCTCTGTGTCGATT 57.076 39.130 0.00 0.00 0.00 3.34
2671 2844 5.654650 AGAAGGAAAGTATCTCTGTGTCGAT 59.345 40.000 0.00 0.00 0.00 3.59
2672 2845 5.010933 AGAAGGAAAGTATCTCTGTGTCGA 58.989 41.667 0.00 0.00 0.00 4.20
2673 2846 5.317733 AGAAGGAAAGTATCTCTGTGTCG 57.682 43.478 0.00 0.00 0.00 4.35
2674 2847 7.572168 GCAAAAGAAGGAAAGTATCTCTGTGTC 60.572 40.741 0.00 0.00 0.00 3.67
2675 2848 6.205658 GCAAAAGAAGGAAAGTATCTCTGTGT 59.794 38.462 0.00 0.00 0.00 3.72
2676 2849 6.429385 AGCAAAAGAAGGAAAGTATCTCTGTG 59.571 38.462 0.00 0.00 0.00 3.66
2677 2850 6.538263 AGCAAAAGAAGGAAAGTATCTCTGT 58.462 36.000 0.00 0.00 0.00 3.41
2678 2851 7.604164 TGTAGCAAAAGAAGGAAAGTATCTCTG 59.396 37.037 0.00 0.00 0.00 3.35
2679 2852 7.680730 TGTAGCAAAAGAAGGAAAGTATCTCT 58.319 34.615 0.00 0.00 0.00 3.10
2680 2853 7.907214 TGTAGCAAAAGAAGGAAAGTATCTC 57.093 36.000 0.00 0.00 0.00 2.75
2681 2854 8.157476 TCTTGTAGCAAAAGAAGGAAAGTATCT 58.843 33.333 0.00 0.00 30.79 1.98
2682 2855 8.324163 TCTTGTAGCAAAAGAAGGAAAGTATC 57.676 34.615 0.00 0.00 30.79 2.24
2683 2856 8.691661 TTCTTGTAGCAAAAGAAGGAAAGTAT 57.308 30.769 4.84 0.00 38.43 2.12
2692 2865 6.539173 TGTATCCCTTCTTGTAGCAAAAGAA 58.461 36.000 7.86 7.86 40.46 2.52
2693 2866 6.013725 TCTGTATCCCTTCTTGTAGCAAAAGA 60.014 38.462 0.00 0.00 31.85 2.52
2694 2867 6.092807 GTCTGTATCCCTTCTTGTAGCAAAAG 59.907 42.308 0.00 0.00 0.00 2.27
2695 2868 5.938125 GTCTGTATCCCTTCTTGTAGCAAAA 59.062 40.000 0.00 0.00 0.00 2.44
2696 2869 5.012664 TGTCTGTATCCCTTCTTGTAGCAAA 59.987 40.000 0.00 0.00 0.00 3.68
2697 2870 4.530553 TGTCTGTATCCCTTCTTGTAGCAA 59.469 41.667 0.00 0.00 0.00 3.91
2698 2871 4.093743 TGTCTGTATCCCTTCTTGTAGCA 58.906 43.478 0.00 0.00 0.00 3.49
2699 2872 4.737855 TGTCTGTATCCCTTCTTGTAGC 57.262 45.455 0.00 0.00 0.00 3.58
2700 2873 6.878317 TGATTGTCTGTATCCCTTCTTGTAG 58.122 40.000 0.00 0.00 0.00 2.74
2701 2874 6.127054 CCTGATTGTCTGTATCCCTTCTTGTA 60.127 42.308 0.00 0.00 0.00 2.41
2702 2875 5.338708 CCTGATTGTCTGTATCCCTTCTTGT 60.339 44.000 0.00 0.00 0.00 3.16
2703 2876 5.104776 TCCTGATTGTCTGTATCCCTTCTTG 60.105 44.000 0.00 0.00 0.00 3.02
2704 2877 5.032846 TCCTGATTGTCTGTATCCCTTCTT 58.967 41.667 0.00 0.00 0.00 2.52
2705 2878 4.624913 TCCTGATTGTCTGTATCCCTTCT 58.375 43.478 0.00 0.00 0.00 2.85
2706 2879 4.651503 TCTCCTGATTGTCTGTATCCCTTC 59.348 45.833 0.00 0.00 0.00 3.46
2707 2880 4.624913 TCTCCTGATTGTCTGTATCCCTT 58.375 43.478 0.00 0.00 0.00 3.95
2708 2881 4.078922 TCTCTCCTGATTGTCTGTATCCCT 60.079 45.833 0.00 0.00 0.00 4.20
2709 2882 4.219115 TCTCTCCTGATTGTCTGTATCCC 58.781 47.826 0.00 0.00 0.00 3.85
2710 2883 5.136828 TCTCTCTCCTGATTGTCTGTATCC 58.863 45.833 0.00 0.00 0.00 2.59
2711 2884 6.899393 ATCTCTCTCCTGATTGTCTGTATC 57.101 41.667 0.00 0.00 0.00 2.24
2712 2885 7.526041 AGTATCTCTCTCCTGATTGTCTGTAT 58.474 38.462 0.00 0.00 0.00 2.29
2713 2886 6.905736 AGTATCTCTCTCCTGATTGTCTGTA 58.094 40.000 0.00 0.00 0.00 2.74
2714 2887 5.765510 AGTATCTCTCTCCTGATTGTCTGT 58.234 41.667 0.00 0.00 0.00 3.41
2715 2888 6.713762 AAGTATCTCTCTCCTGATTGTCTG 57.286 41.667 0.00 0.00 0.00 3.51
2716 2889 6.323739 GGAAAGTATCTCTCTCCTGATTGTCT 59.676 42.308 0.00 0.00 0.00 3.41
2717 2890 6.462347 GGGAAAGTATCTCTCTCCTGATTGTC 60.462 46.154 0.00 0.00 0.00 3.18
2718 2891 5.365314 GGGAAAGTATCTCTCTCCTGATTGT 59.635 44.000 0.00 0.00 0.00 2.71
2719 2892 5.602145 AGGGAAAGTATCTCTCTCCTGATTG 59.398 44.000 0.00 0.00 31.13 2.67
2720 2893 5.787327 AGGGAAAGTATCTCTCTCCTGATT 58.213 41.667 0.00 0.00 31.13 2.57
2721 2894 5.417170 AGGGAAAGTATCTCTCTCCTGAT 57.583 43.478 0.00 0.00 31.13 2.90
2722 2895 4.890499 AGGGAAAGTATCTCTCTCCTGA 57.110 45.455 0.00 0.00 31.13 3.86
2723 2896 5.948742 AAAGGGAAAGTATCTCTCTCCTG 57.051 43.478 0.00 0.00 38.17 3.86
2724 2897 6.733334 AGAAAAAGGGAAAGTATCTCTCTCCT 59.267 38.462 0.00 0.00 38.17 3.69
2725 2898 6.953101 AGAAAAAGGGAAAGTATCTCTCTCC 58.047 40.000 0.00 0.00 38.17 3.71
2726 2899 9.945904 TTAAGAAAAAGGGAAAGTATCTCTCTC 57.054 33.333 0.00 0.00 38.17 3.20
2727 2900 9.952030 CTTAAGAAAAAGGGAAAGTATCTCTCT 57.048 33.333 0.00 0.00 38.17 3.10
2728 2901 9.168451 CCTTAAGAAAAAGGGAAAGTATCTCTC 57.832 37.037 3.36 0.00 38.17 3.20
2741 2914 5.047306 CCCTTGTTAGCCCTTAAGAAAAAGG 60.047 44.000 13.29 13.29 44.87 3.11
2742 2915 5.773176 TCCCTTGTTAGCCCTTAAGAAAAAG 59.227 40.000 3.36 1.12 0.00 2.27
2743 2916 5.707495 TCCCTTGTTAGCCCTTAAGAAAAA 58.293 37.500 3.36 0.00 0.00 1.94
2744 2917 5.327737 TCCCTTGTTAGCCCTTAAGAAAA 57.672 39.130 3.36 0.00 0.00 2.29
2745 2918 5.327737 TTCCCTTGTTAGCCCTTAAGAAA 57.672 39.130 3.36 0.00 0.00 2.52
2746 2919 5.530176 ATTCCCTTGTTAGCCCTTAAGAA 57.470 39.130 3.36 0.00 0.00 2.52
2747 2920 5.530176 AATTCCCTTGTTAGCCCTTAAGA 57.470 39.130 3.36 0.00 0.00 2.10
2748 2921 7.060421 TCATAATTCCCTTGTTAGCCCTTAAG 58.940 38.462 0.00 0.00 0.00 1.85
2749 2922 6.975949 TCATAATTCCCTTGTTAGCCCTTAA 58.024 36.000 0.00 0.00 0.00 1.85
2750 2923 6.410388 CCTCATAATTCCCTTGTTAGCCCTTA 60.410 42.308 0.00 0.00 0.00 2.69
2751 2924 5.449553 CTCATAATTCCCTTGTTAGCCCTT 58.550 41.667 0.00 0.00 0.00 3.95
2752 2925 4.141158 CCTCATAATTCCCTTGTTAGCCCT 60.141 45.833 0.00 0.00 0.00 5.19
2753 2926 4.141251 TCCTCATAATTCCCTTGTTAGCCC 60.141 45.833 0.00 0.00 0.00 5.19
2754 2927 5.048846 TCCTCATAATTCCCTTGTTAGCC 57.951 43.478 0.00 0.00 0.00 3.93
2755 2928 7.588497 AATTCCTCATAATTCCCTTGTTAGC 57.412 36.000 0.00 0.00 0.00 3.09
2758 2931 9.413734 CTTCTAATTCCTCATAATTCCCTTGTT 57.586 33.333 0.00 0.00 31.63 2.83
2759 2932 8.781951 TCTTCTAATTCCTCATAATTCCCTTGT 58.218 33.333 0.00 0.00 31.63 3.16
2760 2933 9.632638 TTCTTCTAATTCCTCATAATTCCCTTG 57.367 33.333 0.00 0.00 31.63 3.61
2764 2937 9.905171 GCATTTCTTCTAATTCCTCATAATTCC 57.095 33.333 0.00 0.00 31.63 3.01
2767 2940 8.854117 GGTGCATTTCTTCTAATTCCTCATAAT 58.146 33.333 0.00 0.00 0.00 1.28
2768 2941 8.055181 AGGTGCATTTCTTCTAATTCCTCATAA 58.945 33.333 0.00 0.00 0.00 1.90
2769 2942 7.577303 AGGTGCATTTCTTCTAATTCCTCATA 58.423 34.615 0.00 0.00 0.00 2.15
2770 2943 6.430007 AGGTGCATTTCTTCTAATTCCTCAT 58.570 36.000 0.00 0.00 0.00 2.90
2771 2944 5.819991 AGGTGCATTTCTTCTAATTCCTCA 58.180 37.500 0.00 0.00 0.00 3.86
2772 2945 6.765915 AAGGTGCATTTCTTCTAATTCCTC 57.234 37.500 0.00 0.00 0.00 3.71
2773 2946 7.175104 TGTAAGGTGCATTTCTTCTAATTCCT 58.825 34.615 0.00 0.00 0.00 3.36
2774 2947 7.391148 TGTAAGGTGCATTTCTTCTAATTCC 57.609 36.000 0.00 0.00 0.00 3.01
2775 2948 9.508567 GAATGTAAGGTGCATTTCTTCTAATTC 57.491 33.333 0.00 2.73 36.77 2.17
2776 2949 9.247861 AGAATGTAAGGTGCATTTCTTCTAATT 57.752 29.630 0.00 0.00 36.77 1.40
2777 2950 8.680903 CAGAATGTAAGGTGCATTTCTTCTAAT 58.319 33.333 0.00 0.00 36.77 1.73
2778 2951 7.121168 CCAGAATGTAAGGTGCATTTCTTCTAA 59.879 37.037 0.00 0.00 36.77 2.10
2779 2952 6.599244 CCAGAATGTAAGGTGCATTTCTTCTA 59.401 38.462 0.00 0.00 36.77 2.10
2780 2953 5.416952 CCAGAATGTAAGGTGCATTTCTTCT 59.583 40.000 0.00 0.00 36.77 2.85
2781 2954 5.415701 TCCAGAATGTAAGGTGCATTTCTTC 59.584 40.000 0.00 0.00 36.77 2.87
2782 2955 5.324409 TCCAGAATGTAAGGTGCATTTCTT 58.676 37.500 0.00 0.00 36.77 2.52
2783 2956 4.922206 TCCAGAATGTAAGGTGCATTTCT 58.078 39.130 0.00 0.00 36.77 2.52
2784 2957 5.643379 TTCCAGAATGTAAGGTGCATTTC 57.357 39.130 0.00 0.00 36.77 2.17
2785 2958 6.610075 AATTCCAGAATGTAAGGTGCATTT 57.390 33.333 0.00 0.00 36.77 2.32
2786 2959 6.610075 AAATTCCAGAATGTAAGGTGCATT 57.390 33.333 0.00 0.00 39.04 3.56
2787 2960 6.610075 AAAATTCCAGAATGTAAGGTGCAT 57.390 33.333 0.00 0.00 0.00 3.96
2788 2961 7.395772 TGATAAAATTCCAGAATGTAAGGTGCA 59.604 33.333 0.00 0.00 0.00 4.57
2789 2962 7.771183 TGATAAAATTCCAGAATGTAAGGTGC 58.229 34.615 0.00 0.00 0.00 5.01
2819 2992 8.641541 CCATTCCTTTATATAAGGTGCATTTGT 58.358 33.333 4.13 0.00 38.55 2.83
2820 2993 8.859090 TCCATTCCTTTATATAAGGTGCATTTG 58.141 33.333 4.13 0.00 38.55 2.32
2821 2994 9.082313 CTCCATTCCTTTATATAAGGTGCATTT 57.918 33.333 4.13 0.00 38.55 2.32
2822 2995 7.671398 CCTCCATTCCTTTATATAAGGTGCATT 59.329 37.037 4.13 0.00 38.55 3.56
2823 2996 7.177878 CCTCCATTCCTTTATATAAGGTGCAT 58.822 38.462 4.13 0.00 38.55 3.96
2824 2997 6.467194 CCCTCCATTCCTTTATATAAGGTGCA 60.467 42.308 4.13 0.00 38.55 4.57
2825 2998 5.946377 CCCTCCATTCCTTTATATAAGGTGC 59.054 44.000 4.13 0.00 38.55 5.01
2826 2999 7.017651 ACTCCCTCCATTCCTTTATATAAGGTG 59.982 40.741 4.13 0.00 38.55 4.00
2827 3000 7.089566 ACTCCCTCCATTCCTTTATATAAGGT 58.910 38.462 4.13 0.00 38.55 3.50
2828 3001 7.575499 ACTCCCTCCATTCCTTTATATAAGG 57.425 40.000 0.00 0.00 38.78 2.69
2830 3003 9.629649 ACATACTCCCTCCATTCCTTTATATAA 57.370 33.333 0.00 0.00 0.00 0.98
2832 3005 9.805204 ATACATACTCCCTCCATTCCTTTATAT 57.195 33.333 0.00 0.00 0.00 0.86
2833 3006 9.629649 AATACATACTCCCTCCATTCCTTTATA 57.370 33.333 0.00 0.00 0.00 0.98
2834 3007 8.525729 AATACATACTCCCTCCATTCCTTTAT 57.474 34.615 0.00 0.00 0.00 1.40
2835 3008 7.947782 AATACATACTCCCTCCATTCCTTTA 57.052 36.000 0.00 0.00 0.00 1.85
2836 3009 6.848562 AATACATACTCCCTCCATTCCTTT 57.151 37.500 0.00 0.00 0.00 3.11
2837 3010 6.160459 ACAAATACATACTCCCTCCATTCCTT 59.840 38.462 0.00 0.00 0.00 3.36
2838 3011 5.672194 ACAAATACATACTCCCTCCATTCCT 59.328 40.000 0.00 0.00 0.00 3.36
2839 3012 5.941788 ACAAATACATACTCCCTCCATTCC 58.058 41.667 0.00 0.00 0.00 3.01
2840 3013 7.162082 CCTACAAATACATACTCCCTCCATTC 58.838 42.308 0.00 0.00 0.00 2.67
2841 3014 6.619852 ACCTACAAATACATACTCCCTCCATT 59.380 38.462 0.00 0.00 0.00 3.16
2842 3015 6.151049 ACCTACAAATACATACTCCCTCCAT 58.849 40.000 0.00 0.00 0.00 3.41
2843 3016 5.535029 ACCTACAAATACATACTCCCTCCA 58.465 41.667 0.00 0.00 0.00 3.86
2844 3017 6.496144 AACCTACAAATACATACTCCCTCC 57.504 41.667 0.00 0.00 0.00 4.30
2879 3052 8.732746 ACGGTTTGCATTAATCTAGTAGAATT 57.267 30.769 3.45 2.54 0.00 2.17
2883 3056 7.170998 CCCTTACGGTTTGCATTAATCTAGTAG 59.829 40.741 0.00 0.00 0.00 2.57
2897 3070 1.937899 CGGAATAGCCCTTACGGTTTG 59.062 52.381 0.00 0.00 0.00 2.93
2934 3107 7.087639 GGCGTATAAAAATAGCCAAATATGCA 58.912 34.615 0.00 0.00 46.48 3.96
2963 3136 6.535508 CCAAGTAAGCTCCAGTAAATCTGTAC 59.464 42.308 0.00 0.00 42.19 2.90
2978 3156 7.611855 ACAGTAAAGATTAATGCCAAGTAAGCT 59.388 33.333 0.00 0.00 34.29 3.74
2981 3159 9.727859 TGTACAGTAAAGATTAATGCCAAGTAA 57.272 29.630 0.00 0.00 0.00 2.24
2984 3162 8.892723 TGATGTACAGTAAAGATTAATGCCAAG 58.107 33.333 0.33 0.00 0.00 3.61
2987 3165 9.503427 GTTTGATGTACAGTAAAGATTAATGCC 57.497 33.333 0.33 0.00 0.00 4.40
3001 3179 9.429359 ACTTAGAAGATTCTGTTTGATGTACAG 57.571 33.333 0.33 0.00 43.41 2.74
3012 3191 8.349245 CGTGAGATATGACTTAGAAGATTCTGT 58.651 37.037 5.34 0.00 38.19 3.41
3016 3195 7.504238 AGTCCGTGAGATATGACTTAGAAGATT 59.496 37.037 0.00 0.00 34.53 2.40
3039 3218 4.218635 GGGGAATGAAAAGAAAGTGGAGTC 59.781 45.833 0.00 0.00 0.00 3.36
3067 3246 7.779754 AATACATTAATGGCCATGCTAATCA 57.220 32.000 21.63 10.53 0.00 2.57
3114 3293 4.963276 TCTAGGTATGCATTGTTGTTGC 57.037 40.909 3.54 0.00 40.55 4.17
3123 3302 9.466497 CCAAATGGTAATAATCTAGGTATGCAT 57.534 33.333 3.79 3.79 0.00 3.96
3138 3317 5.656416 CCCACACTAACATCCAAATGGTAAT 59.344 40.000 0.00 0.00 34.66 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.