Multiple sequence alignment - TraesCS3B01G111500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G111500 chr3B 100.000 5462 0 0 1 5462 77687427 77692888 0.000000e+00 10087
1 TraesCS3B01G111500 chr3B 94.934 829 34 4 2 822 670194088 670194916 0.000000e+00 1291
2 TraesCS3B01G111500 chr3B 98.077 104 2 0 4924 5027 659778917 659778814 1.210000e-41 182
3 TraesCS3B01G111500 chr3A 92.638 3355 178 33 1596 4927 61216635 61219943 0.000000e+00 4763
4 TraesCS3B01G111500 chr3A 94.969 477 21 2 1088 1564 61214358 61214831 0.000000e+00 745
5 TraesCS3B01G111500 chr3A 92.784 194 6 3 869 1062 61213873 61214058 1.940000e-69 274
6 TraesCS3B01G111500 chr3A 90.226 133 10 3 4903 5034 739907228 739907098 2.620000e-38 171
7 TraesCS3B01G111500 chr3D 86.880 4093 349 89 869 4878 48804379 48808366 0.000000e+00 4410
8 TraesCS3B01G111500 chr5B 95.060 830 36 5 1 825 547314451 547315280 0.000000e+00 1301
9 TraesCS3B01G111500 chr5B 94.068 826 37 5 2 822 540327465 540326647 0.000000e+00 1243
10 TraesCS3B01G111500 chr5B 93.833 827 43 6 2 822 182508346 182507522 0.000000e+00 1238
11 TraesCS3B01G111500 chr5B 92.157 306 22 2 5024 5328 239258598 239258294 1.090000e-116 431
12 TraesCS3B01G111500 chr7B 94.794 826 36 6 2 823 424535769 424536591 0.000000e+00 1280
13 TraesCS3B01G111500 chr7B 96.296 108 4 0 4920 5027 209743857 209743750 1.560000e-40 178
14 TraesCS3B01G111500 chr4B 94.539 824 38 5 2 823 221094938 221094120 0.000000e+00 1266
15 TraesCS3B01G111500 chr4B 97.059 306 9 0 5023 5328 56558774 56558469 2.920000e-142 516
16 TraesCS3B01G111500 chr4B 95.738 305 13 0 5024 5328 150972482 150972178 4.920000e-135 492
17 TraesCS3B01G111500 chr6B 94.404 822 41 3 2 820 577375163 577375982 0.000000e+00 1258
18 TraesCS3B01G111500 chr6B 91.475 305 26 0 5024 5328 513878855 513879159 2.350000e-113 420
19 TraesCS3B01G111500 chr6B 94.643 112 5 1 4923 5034 52569304 52569414 7.270000e-39 172
20 TraesCS3B01G111500 chr2B 94.096 830 35 7 2 818 715019447 715020275 0.000000e+00 1249
21 TraesCS3B01G111500 chr7A 93.051 849 37 11 2 846 85187197 85186367 0.000000e+00 1221
22 TraesCS3B01G111500 chr7A 93.729 303 18 1 5026 5328 4987207 4986906 2.320000e-123 453
23 TraesCS3B01G111500 chrUn 97.360 303 8 0 5026 5328 52989385 52989687 2.920000e-142 516
24 TraesCS3B01G111500 chr5A 94.719 303 16 0 5026 5328 675308674 675308372 6.400000e-129 472
25 TraesCS3B01G111500 chr5A 93.103 116 8 0 4926 5041 475643023 475642908 2.620000e-38 171
26 TraesCS3B01G111500 chr1B 91.234 308 10 1 5021 5328 359897109 359897399 2.370000e-108 403
27 TraesCS3B01G111500 chr2A 86.458 192 20 6 5029 5216 439381987 439381798 7.170000e-49 206
28 TraesCS3B01G111500 chr2A 95.690 116 4 1 5214 5328 439379850 439379735 9.340000e-43 185
29 TraesCS3B01G111500 chr2D 98.077 104 2 0 4924 5027 36275112 36275215 1.210000e-41 182
30 TraesCS3B01G111500 chr2D 95.536 112 4 1 4923 5034 35028802 35028912 1.560000e-40 178
31 TraesCS3B01G111500 chr2D 95.495 111 4 1 4924 5034 522748528 522748637 5.620000e-40 176
32 TraesCS3B01G111500 chr1A 94.643 112 5 1 4923 5034 17016062 17015952 7.270000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G111500 chr3B 77687427 77692888 5461 False 10087.000000 10087 100.000000 1 5462 1 chr3B.!!$F1 5461
1 TraesCS3B01G111500 chr3B 670194088 670194916 828 False 1291.000000 1291 94.934000 2 822 1 chr3B.!!$F2 820
2 TraesCS3B01G111500 chr3A 61213873 61219943 6070 False 1927.333333 4763 93.463667 869 4927 3 chr3A.!!$F1 4058
3 TraesCS3B01G111500 chr3D 48804379 48808366 3987 False 4410.000000 4410 86.880000 869 4878 1 chr3D.!!$F1 4009
4 TraesCS3B01G111500 chr5B 547314451 547315280 829 False 1301.000000 1301 95.060000 1 825 1 chr5B.!!$F1 824
5 TraesCS3B01G111500 chr5B 540326647 540327465 818 True 1243.000000 1243 94.068000 2 822 1 chr5B.!!$R3 820
6 TraesCS3B01G111500 chr5B 182507522 182508346 824 True 1238.000000 1238 93.833000 2 822 1 chr5B.!!$R1 820
7 TraesCS3B01G111500 chr7B 424535769 424536591 822 False 1280.000000 1280 94.794000 2 823 1 chr7B.!!$F1 821
8 TraesCS3B01G111500 chr4B 221094120 221094938 818 True 1266.000000 1266 94.539000 2 823 1 chr4B.!!$R3 821
9 TraesCS3B01G111500 chr6B 577375163 577375982 819 False 1258.000000 1258 94.404000 2 820 1 chr6B.!!$F3 818
10 TraesCS3B01G111500 chr2B 715019447 715020275 828 False 1249.000000 1249 94.096000 2 818 1 chr2B.!!$F1 816
11 TraesCS3B01G111500 chr7A 85186367 85187197 830 True 1221.000000 1221 93.051000 2 846 1 chr7A.!!$R2 844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 870 0.457166 CCGTTAGCCATGTCGTCGAA 60.457 55.0 0.0 0.0 0.0 3.71 F
924 959 0.618680 CAGACCAGACCATCCTCCCA 60.619 60.0 0.0 0.0 0.0 4.37 F
2130 4219 0.251341 AGTGGTTGATTGCCCTGGAC 60.251 55.0 0.0 0.0 0.0 4.02 F
3486 5637 0.320771 CCTTAGCTGGCACTGACGTT 60.321 55.0 0.0 0.0 0.0 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1636 3722 0.475906 AGATTGTGAGCATAGCCCCC 59.524 55.0 0.00 0.0 0.00 5.40 R
2258 4356 0.512952 GACACATGAACAGGCGACAC 59.487 55.0 0.00 0.0 0.00 3.67 R
4095 6259 0.249955 AAAATTTGCTGCCATCGGGG 59.750 50.0 0.00 0.0 40.85 5.73 R
4990 7159 0.107831 AACCAAGCAGGCGTGACTTA 59.892 50.0 11.29 0.0 43.14 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 189 1.298713 CTTCGTCCTCATCGAGCCG 60.299 63.158 0.00 0.00 38.52 5.52
233 236 2.347691 TACGAGGAGATAGCCCGGCA 62.348 60.000 13.15 0.00 0.00 5.69
390 393 2.097918 GACAGCGACGACGACGAT 59.902 61.111 22.94 14.51 42.66 3.73
451 460 2.611800 AGGGATGCAGCAGGGACA 60.612 61.111 3.51 0.00 0.00 4.02
825 860 0.744414 GCTGAAGATGCCGTTAGCCA 60.744 55.000 0.00 0.00 42.71 4.75
828 863 1.065491 TGAAGATGCCGTTAGCCATGT 60.065 47.619 0.00 0.00 42.71 3.21
829 864 1.599542 GAAGATGCCGTTAGCCATGTC 59.400 52.381 0.00 0.00 42.71 3.06
830 865 0.530650 AGATGCCGTTAGCCATGTCG 60.531 55.000 0.00 0.00 42.71 4.35
831 866 0.810031 GATGCCGTTAGCCATGTCGT 60.810 55.000 0.00 0.00 42.71 4.34
832 867 0.810031 ATGCCGTTAGCCATGTCGTC 60.810 55.000 0.00 0.00 42.71 4.20
834 869 1.138036 CCGTTAGCCATGTCGTCGA 59.862 57.895 0.00 0.00 0.00 4.20
835 870 0.457166 CCGTTAGCCATGTCGTCGAA 60.457 55.000 0.00 0.00 0.00 3.71
837 872 1.320555 CGTTAGCCATGTCGTCGAAAG 59.679 52.381 0.00 0.00 0.00 2.62
838 873 1.659098 GTTAGCCATGTCGTCGAAAGG 59.341 52.381 0.00 0.13 0.00 3.11
839 874 1.179152 TAGCCATGTCGTCGAAAGGA 58.821 50.000 11.73 0.00 0.00 3.36
842 877 1.533731 GCCATGTCGTCGAAAGGAAAA 59.466 47.619 11.73 0.00 0.00 2.29
843 878 2.031508 GCCATGTCGTCGAAAGGAAAAA 60.032 45.455 11.73 0.00 0.00 1.94
863 898 6.867519 AAAAAGAAAAAGAAAGTCTCCCCA 57.132 33.333 0.00 0.00 0.00 4.96
864 899 5.854010 AAAGAAAAAGAAAGTCTCCCCAC 57.146 39.130 0.00 0.00 0.00 4.61
865 900 3.833732 AGAAAAAGAAAGTCTCCCCACC 58.166 45.455 0.00 0.00 0.00 4.61
866 901 2.677542 AAAAGAAAGTCTCCCCACCC 57.322 50.000 0.00 0.00 0.00 4.61
867 902 0.778083 AAAGAAAGTCTCCCCACCCC 59.222 55.000 0.00 0.00 0.00 4.95
885 920 1.004918 CAGTGAGTCCAACCCGGTC 60.005 63.158 0.00 0.00 35.57 4.79
889 924 3.644399 GAGTCCAACCCGGTCGAGC 62.644 68.421 4.06 4.06 35.57 5.03
890 925 4.754667 GTCCAACCCGGTCGAGCC 62.755 72.222 9.39 1.35 35.57 4.70
924 959 0.618680 CAGACCAGACCATCCTCCCA 60.619 60.000 0.00 0.00 0.00 4.37
955 991 2.764547 CTCCTTCGTCCCCTCCCC 60.765 72.222 0.00 0.00 0.00 4.81
956 992 4.410033 TCCTTCGTCCCCTCCCCC 62.410 72.222 0.00 0.00 0.00 5.40
957 993 4.733725 CCTTCGTCCCCTCCCCCA 62.734 72.222 0.00 0.00 0.00 4.96
958 994 3.400054 CTTCGTCCCCTCCCCCAC 61.400 72.222 0.00 0.00 0.00 4.61
1452 1765 2.240500 GGTCATCGTCTGCATCGCC 61.241 63.158 6.57 0.00 0.00 5.54
1455 1768 2.107750 ATCGTCTGCATCGCCCTG 59.892 61.111 6.57 0.00 0.00 4.45
1564 1877 2.089349 GTCGCCTTCGCTGTGAGTC 61.089 63.158 0.00 0.00 35.26 3.36
1565 1878 2.811317 CGCCTTCGCTGTGAGTCC 60.811 66.667 0.00 0.00 0.00 3.85
1571 1884 2.681778 CGCTGTGAGTCCCTCCCT 60.682 66.667 0.00 0.00 0.00 4.20
1634 3720 3.118408 TGAAGCTATTCCAGTAACGCCAT 60.118 43.478 0.00 0.00 34.28 4.40
1635 3721 3.113260 AGCTATTCCAGTAACGCCATC 57.887 47.619 0.00 0.00 0.00 3.51
1636 3722 1.792949 GCTATTCCAGTAACGCCATCG 59.207 52.381 0.00 0.00 42.43 3.84
1656 3742 1.133668 GGGGGCTATGCTCACAATCTT 60.134 52.381 0.00 0.00 29.54 2.40
1672 3758 6.265196 TCACAATCTTGCTTGGTGAAGTATTT 59.735 34.615 0.00 0.00 0.00 1.40
1756 3844 3.211045 TCCCTTTCAAACTGTGCTGTAC 58.789 45.455 0.00 0.00 0.00 2.90
1759 3847 4.320494 CCCTTTCAAACTGTGCTGTACATC 60.320 45.833 0.00 0.00 38.92 3.06
1760 3848 4.457810 CTTTCAAACTGTGCTGTACATCG 58.542 43.478 0.00 0.00 38.92 3.84
1802 3890 4.334481 ACACTGTTCCTAAAAGAAACCACG 59.666 41.667 0.00 0.00 0.00 4.94
1828 3916 3.804638 CTGATGGGCTGGCATCCCC 62.805 68.421 23.08 18.55 43.24 4.81
1868 3956 7.040892 GCAATGCTAGAAATGTGGAGATCATAA 60.041 37.037 0.00 0.00 0.00 1.90
1936 4024 5.089970 ACTATTACATCTGAGCTGCAACA 57.910 39.130 1.02 0.62 0.00 3.33
1960 4048 4.344104 AGCCATTACTTTGGTTATGTGCT 58.656 39.130 0.00 0.00 39.11 4.40
1961 4049 4.772100 AGCCATTACTTTGGTTATGTGCTT 59.228 37.500 0.00 0.00 36.55 3.91
2106 4195 3.244112 CGAGAACTGGTACTGGGTTCTTT 60.244 47.826 20.46 8.03 46.21 2.52
2130 4219 0.251341 AGTGGTTGATTGCCCTGGAC 60.251 55.000 0.00 0.00 0.00 4.02
2198 4296 4.121317 CAAACCGAGTGTACACCTTGTTA 58.879 43.478 22.28 0.00 0.00 2.41
2226 4324 7.456725 AGATATCACTGCCAGTTAATTGCTAT 58.543 34.615 5.32 0.00 0.00 2.97
2243 4341 5.567037 TGCTATGCCAAAGTACTGGATAT 57.433 39.130 5.35 2.00 38.96 1.63
2258 4356 7.821359 AGTACTGGATATGCATGCTTATAACAG 59.179 37.037 30.97 30.97 33.07 3.16
2479 4586 3.005050 TGCACCTTTGATTGCTCAAGAAG 59.995 43.478 0.00 0.00 42.19 2.85
2544 4653 8.091952 ACTATAGATGATGCATCAGAATCCAT 57.908 34.615 31.36 20.83 42.72 3.41
2567 4677 6.882610 TTATGTGGATATTCATTGAGTGGC 57.117 37.500 0.00 0.00 0.00 5.01
2568 4678 4.233632 TGTGGATATTCATTGAGTGGCA 57.766 40.909 0.00 0.00 0.00 4.92
2569 4679 4.795469 TGTGGATATTCATTGAGTGGCAT 58.205 39.130 0.00 0.00 0.00 4.40
2682 4795 7.671302 AGTACAGGACAGGCATACTTATAATG 58.329 38.462 0.00 0.00 0.00 1.90
2845 4974 2.361757 TGGTTGCACCATCAGAAAACTG 59.638 45.455 4.16 0.00 44.79 3.16
2863 4992 7.609532 AGAAAACTGGTATTCTTCTCAAGATGG 59.390 37.037 0.00 0.00 37.38 3.51
3086 5236 0.758734 AGGTGCAGCAACAGAGTGTA 59.241 50.000 19.63 0.00 0.00 2.90
3263 5414 8.988060 TCATGTTGATTACTCATAGAAGGGTAA 58.012 33.333 0.00 0.00 0.00 2.85
3372 5523 3.358707 TTGTCATAGGGTATGTACGCG 57.641 47.619 3.53 3.53 43.10 6.01
3483 5634 0.674895 CACCCTTAGCTGGCACTGAC 60.675 60.000 0.00 0.00 0.00 3.51
3486 5637 0.320771 CCTTAGCTGGCACTGACGTT 60.321 55.000 0.00 0.00 0.00 3.99
3612 5763 5.751586 AGAAAGGGTCTTGTAAGTGTTGAA 58.248 37.500 0.00 0.00 29.66 2.69
3670 5821 8.559536 TGTTCTTCTCTATTTTGTAGCAAACTG 58.440 33.333 0.00 0.00 0.00 3.16
3709 5860 8.904834 TCTAGATTGAACAGTCTGGTACTTATC 58.095 37.037 4.53 0.00 35.76 1.75
3714 5865 5.483937 TGAACAGTCTGGTACTTATCCATGT 59.516 40.000 4.53 0.00 35.76 3.21
3734 5885 7.982919 TCCATGTACCATATAATTATGTACCGC 59.017 37.037 16.22 3.47 34.54 5.68
3738 5889 6.368779 ACCATATAATTATGTACCGCACCT 57.631 37.500 8.28 0.00 34.54 4.00
3756 5909 5.811399 CACCTTTAGTGTGAGTGAAAACA 57.189 39.130 0.00 0.00 41.93 2.83
3792 5946 3.613299 GCGAAGGTAGAGTTAAGTGAAGC 59.387 47.826 0.00 0.00 0.00 3.86
3816 5970 7.068470 AGCAAATTTCCATCAAATTGTTGGTTT 59.932 29.630 19.18 11.71 42.86 3.27
3817 5971 8.348507 GCAAATTTCCATCAAATTGTTGGTTTA 58.651 29.630 19.18 9.04 42.86 2.01
3844 5998 9.304731 TCTTCAAATTTAATGCACAATCTATGC 57.695 29.630 0.00 0.00 43.68 3.14
3845 5999 9.309516 CTTCAAATTTAATGCACAATCTATGCT 57.690 29.630 0.00 0.00 43.77 3.79
3846 6000 8.861033 TCAAATTTAATGCACAATCTATGCTC 57.139 30.769 0.00 0.00 43.77 4.26
3847 6001 8.468399 TCAAATTTAATGCACAATCTATGCTCA 58.532 29.630 0.00 0.00 43.77 4.26
3848 6002 8.537223 CAAATTTAATGCACAATCTATGCTCAC 58.463 33.333 0.00 0.00 43.77 3.51
3850 6004 3.572632 ATGCACAATCTATGCTCACCT 57.427 42.857 0.00 0.00 43.77 4.00
3851 6005 2.910199 TGCACAATCTATGCTCACCTC 58.090 47.619 0.00 0.00 43.77 3.85
3852 6006 2.236893 TGCACAATCTATGCTCACCTCA 59.763 45.455 0.00 0.00 43.77 3.86
3853 6007 2.871022 GCACAATCTATGCTCACCTCAG 59.129 50.000 0.00 0.00 40.08 3.35
3859 6015 7.119699 CACAATCTATGCTCACCTCAGTTTTTA 59.880 37.037 0.00 0.00 0.00 1.52
3860 6016 7.665559 ACAATCTATGCTCACCTCAGTTTTTAA 59.334 33.333 0.00 0.00 0.00 1.52
3872 6028 3.645687 TCAGTTTTTAATGGCAGCCCTTT 59.354 39.130 9.64 5.42 33.48 3.11
3882 6038 2.825532 TGGCAGCCCTTTTGTAGAAATC 59.174 45.455 9.64 0.00 0.00 2.17
3885 6041 4.488879 GCAGCCCTTTTGTAGAAATCAAG 58.511 43.478 0.00 0.00 0.00 3.02
3888 6044 6.738453 GCAGCCCTTTTGTAGAAATCAAGAAA 60.738 38.462 0.00 0.00 0.00 2.52
3889 6045 7.381323 CAGCCCTTTTGTAGAAATCAAGAAAT 58.619 34.615 0.00 0.00 0.00 2.17
3890 6046 7.330208 CAGCCCTTTTGTAGAAATCAAGAAATG 59.670 37.037 0.00 0.00 0.00 2.32
3891 6047 7.233348 AGCCCTTTTGTAGAAATCAAGAAATGA 59.767 33.333 0.00 0.00 43.67 2.57
3892 6048 7.872483 GCCCTTTTGTAGAAATCAAGAAATGAA 59.128 33.333 0.00 0.00 42.54 2.57
3893 6049 9.196552 CCCTTTTGTAGAAATCAAGAAATGAAC 57.803 33.333 0.00 0.00 42.54 3.18
3894 6050 9.748708 CCTTTTGTAGAAATCAAGAAATGAACA 57.251 29.630 0.00 0.00 42.54 3.18
3962 6118 4.048820 CGACTGGTCGTTTGTATTGAAC 57.951 45.455 14.05 0.00 46.99 3.18
3987 6143 6.109156 AGTTTGTTTTGGTATTTCCCCATC 57.891 37.500 0.00 0.00 34.77 3.51
4004 6160 2.459644 CATCCCTTGCCATCCAGAAAA 58.540 47.619 0.00 0.00 0.00 2.29
4006 6162 0.527565 CCCTTGCCATCCAGAAAACG 59.472 55.000 0.00 0.00 0.00 3.60
4082 6246 4.806330 TGCTTGAGAAGGTAGTAAACGAG 58.194 43.478 0.00 0.00 0.00 4.18
4099 6263 4.796038 ACGAGTGGTATTATTATCCCCG 57.204 45.455 0.00 0.00 0.00 5.73
4103 6267 5.671493 GAGTGGTATTATTATCCCCGATGG 58.329 45.833 0.00 0.00 0.00 3.51
4124 6288 4.343526 TGGCAGCAAATTTTCTGACCTTAA 59.656 37.500 19.25 0.00 37.54 1.85
4158 6322 2.287373 GCAGTATGACATGAAGCTGCTC 59.713 50.000 19.51 0.00 43.94 4.26
4209 6373 0.392998 ACCAGCGGCTATTCCTTGTG 60.393 55.000 0.26 0.00 0.00 3.33
4212 6376 1.077716 GCGGCTATTCCTTGTGGGT 60.078 57.895 0.00 0.00 36.25 4.51
4233 6397 0.603569 ACGAGCAGGAGTACAAGGTG 59.396 55.000 0.00 0.00 0.00 4.00
4239 6403 0.840722 AGGAGTACAAGGTGGGTGGG 60.841 60.000 0.00 0.00 0.00 4.61
4260 6424 0.598680 GCTTGATATCCGAGCTGCGT 60.599 55.000 16.71 0.00 46.58 5.24
4335 6499 1.107114 GAGAGGACGCAGAGGATGAA 58.893 55.000 0.00 0.00 0.00 2.57
4344 6508 0.250234 CAGAGGATGAACGCAGGGAA 59.750 55.000 0.00 0.00 0.00 3.97
4346 6510 0.036388 GAGGATGAACGCAGGGAACA 60.036 55.000 0.00 0.00 0.00 3.18
4356 6520 1.846712 GCAGGGAACAAGAGGAGGCT 61.847 60.000 0.00 0.00 0.00 4.58
4535 6700 2.926200 CTCCTCACTCTTACAATGCGTG 59.074 50.000 0.00 0.00 0.00 5.34
4688 6853 4.949238 TGTGTAATTTAGTGGCTGCATGAT 59.051 37.500 0.50 0.00 0.00 2.45
4700 6865 2.223947 GCTGCATGATTGAATGATGGCA 60.224 45.455 6.74 4.62 0.00 4.92
4729 6894 1.613437 CCCTTTTTGGTGCCTACTGTG 59.387 52.381 0.00 0.00 0.00 3.66
4765 6932 1.061711 GATGCTTTGAGCTAGTGTGCG 59.938 52.381 1.29 0.00 42.97 5.34
4774 6941 1.209275 GCTAGTGTGCGGTATGCTCG 61.209 60.000 0.00 0.00 46.63 5.03
4794 6961 1.810853 GCCGCATTTTGCACCCATC 60.811 57.895 0.00 0.00 45.36 3.51
4857 7025 5.168569 CGGTTCTATCTTTCTGTGCACTTA 58.831 41.667 19.41 2.69 0.00 2.24
4882 7050 4.455877 CAGTATTCTGGGTTTTGGAGACAC 59.544 45.833 0.00 0.00 37.86 3.67
4883 7051 3.593442 ATTCTGGGTTTTGGAGACACA 57.407 42.857 0.00 0.00 42.67 3.72
4884 7052 3.593442 TTCTGGGTTTTGGAGACACAT 57.407 42.857 0.00 0.00 42.67 3.21
4893 7061 6.700081 GGGTTTTGGAGACACATTTTTCTAAC 59.300 38.462 0.00 0.00 42.67 2.34
4904 7072 9.463443 GACACATTTTTCTAACTGTTTTGCTAT 57.537 29.630 0.00 0.00 0.00 2.97
4908 7076 9.846248 CATTTTTCTAACTGTTTTGCTATAGCT 57.154 29.630 24.61 5.26 42.66 3.32
4927 7096 3.462021 GCTCATTAGCTGTGACCTAAGG 58.538 50.000 0.00 0.00 45.85 2.69
4928 7097 3.742640 GCTCATTAGCTGTGACCTAAGGG 60.743 52.174 0.00 0.00 45.85 3.95
4929 7098 2.170607 TCATTAGCTGTGACCTAAGGGC 59.829 50.000 0.00 0.00 35.63 5.19
4930 7099 0.909623 TTAGCTGTGACCTAAGGGCC 59.090 55.000 0.00 0.00 35.63 5.80
4931 7100 0.042731 TAGCTGTGACCTAAGGGCCT 59.957 55.000 0.00 0.00 35.63 5.19
4932 7101 1.078143 GCTGTGACCTAAGGGCCTG 60.078 63.158 6.92 0.00 35.63 4.85
4933 7102 1.842381 GCTGTGACCTAAGGGCCTGT 61.842 60.000 6.92 0.00 35.63 4.00
4934 7103 0.693049 CTGTGACCTAAGGGCCTGTT 59.307 55.000 6.92 0.00 35.63 3.16
4935 7104 1.073923 CTGTGACCTAAGGGCCTGTTT 59.926 52.381 6.92 0.00 35.63 2.83
4936 7105 1.202879 TGTGACCTAAGGGCCTGTTTG 60.203 52.381 6.92 0.00 35.63 2.93
4937 7106 0.404040 TGACCTAAGGGCCTGTTTGG 59.596 55.000 6.92 9.84 39.35 3.28
4938 7107 0.404426 GACCTAAGGGCCTGTTTGGT 59.596 55.000 19.13 19.13 35.97 3.67
4939 7108 0.857675 ACCTAAGGGCCTGTTTGGTT 59.142 50.000 6.92 0.00 38.35 3.67
4940 7109 1.203013 ACCTAAGGGCCTGTTTGGTTC 60.203 52.381 6.92 0.00 38.35 3.62
4941 7110 1.545841 CTAAGGGCCTGTTTGGTTCC 58.454 55.000 6.92 0.00 38.35 3.62
4942 7111 0.854218 TAAGGGCCTGTTTGGTTCCA 59.146 50.000 6.92 0.00 38.35 3.53
4943 7112 0.031616 AAGGGCCTGTTTGGTTCCAA 60.032 50.000 6.92 0.00 38.35 3.53
4944 7113 0.190815 AGGGCCTGTTTGGTTCCAAT 59.809 50.000 4.50 0.00 38.35 3.16
4945 7114 1.431243 AGGGCCTGTTTGGTTCCAATA 59.569 47.619 4.50 0.00 38.35 1.90
4946 7115 2.158234 AGGGCCTGTTTGGTTCCAATAA 60.158 45.455 4.50 0.00 38.35 1.40
4947 7116 2.233676 GGGCCTGTTTGGTTCCAATAAG 59.766 50.000 0.84 6.17 38.35 1.73
4948 7117 2.897326 GGCCTGTTTGGTTCCAATAAGT 59.103 45.455 5.06 0.00 38.35 2.24
4949 7118 3.056821 GGCCTGTTTGGTTCCAATAAGTC 60.057 47.826 5.06 0.00 38.35 3.01
4950 7119 3.572255 GCCTGTTTGGTTCCAATAAGTCA 59.428 43.478 5.06 1.06 38.35 3.41
4951 7120 4.558697 GCCTGTTTGGTTCCAATAAGTCAC 60.559 45.833 5.06 0.71 38.35 3.67
4952 7121 4.022329 CCTGTTTGGTTCCAATAAGTCACC 60.022 45.833 5.06 0.00 0.00 4.02
4953 7122 4.798882 TGTTTGGTTCCAATAAGTCACCT 58.201 39.130 5.06 0.00 0.00 4.00
4954 7123 4.582656 TGTTTGGTTCCAATAAGTCACCTG 59.417 41.667 5.06 0.00 0.00 4.00
4955 7124 4.715534 TTGGTTCCAATAAGTCACCTGA 57.284 40.909 0.00 0.00 0.00 3.86
4956 7125 4.015872 TGGTTCCAATAAGTCACCTGAC 57.984 45.455 0.00 0.00 45.08 3.51
4983 7152 2.842457 GTCAGGTGACTTAAAACCCGT 58.158 47.619 2.72 0.00 41.65 5.28
4984 7153 2.546789 GTCAGGTGACTTAAAACCCGTG 59.453 50.000 2.72 0.00 41.65 4.94
4985 7154 2.435069 TCAGGTGACTTAAAACCCGTGA 59.565 45.455 0.00 0.00 40.21 4.35
4986 7155 2.546789 CAGGTGACTTAAAACCCGTGAC 59.453 50.000 0.00 0.00 40.21 3.67
4987 7156 2.436911 AGGTGACTTAAAACCCGTGACT 59.563 45.455 0.00 0.00 37.44 3.41
4988 7157 3.118149 AGGTGACTTAAAACCCGTGACTT 60.118 43.478 0.00 0.00 37.44 3.01
4989 7158 4.101430 AGGTGACTTAAAACCCGTGACTTA 59.899 41.667 0.00 0.00 37.44 2.24
4990 7159 4.999311 GGTGACTTAAAACCCGTGACTTAT 59.001 41.667 0.00 0.00 0.00 1.73
4991 7160 6.014327 AGGTGACTTAAAACCCGTGACTTATA 60.014 38.462 0.00 0.00 37.44 0.98
4992 7161 6.650390 GGTGACTTAAAACCCGTGACTTATAA 59.350 38.462 0.00 0.00 0.00 0.98
4993 7162 7.148523 GGTGACTTAAAACCCGTGACTTATAAG 60.149 40.741 11.05 11.05 0.00 1.73
4994 7163 7.386025 GTGACTTAAAACCCGTGACTTATAAGT 59.614 37.037 18.05 18.05 43.16 2.24
5005 7174 3.611766 ACTTATAAGTCACGCCTGCTT 57.388 42.857 12.50 0.00 32.86 3.91
5006 7175 3.262420 ACTTATAAGTCACGCCTGCTTG 58.738 45.455 12.50 0.00 32.86 4.01
5007 7176 2.309528 TATAAGTCACGCCTGCTTGG 57.690 50.000 0.00 0.00 39.35 3.61
5008 7177 0.324943 ATAAGTCACGCCTGCTTGGT 59.675 50.000 0.00 0.00 38.35 3.67
5009 7178 0.107831 TAAGTCACGCCTGCTTGGTT 59.892 50.000 0.00 0.00 38.35 3.67
5010 7179 1.447317 AAGTCACGCCTGCTTGGTTG 61.447 55.000 0.00 0.00 38.35 3.77
5011 7180 2.186826 GTCACGCCTGCTTGGTTGT 61.187 57.895 0.00 0.00 38.35 3.32
5012 7181 1.891919 TCACGCCTGCTTGGTTGTC 60.892 57.895 0.00 0.00 38.35 3.18
5013 7182 2.186160 CACGCCTGCTTGGTTGTCA 61.186 57.895 0.00 0.00 38.35 3.58
5014 7183 2.186826 ACGCCTGCTTGGTTGTCAC 61.187 57.895 0.00 0.00 38.35 3.67
5015 7184 2.908073 CGCCTGCTTGGTTGTCACC 61.908 63.158 0.00 0.00 44.56 4.02
5016 7185 1.529244 GCCTGCTTGGTTGTCACCT 60.529 57.895 0.00 0.00 44.61 4.00
5017 7186 1.799258 GCCTGCTTGGTTGTCACCTG 61.799 60.000 0.00 0.00 44.61 4.00
5018 7187 0.179020 CCTGCTTGGTTGTCACCTGA 60.179 55.000 0.00 0.00 44.61 3.86
5019 7188 0.947244 CTGCTTGGTTGTCACCTGAC 59.053 55.000 0.00 0.00 44.61 3.51
5020 7189 0.546122 TGCTTGGTTGTCACCTGACT 59.454 50.000 6.97 0.00 44.61 3.41
5021 7190 1.064758 TGCTTGGTTGTCACCTGACTT 60.065 47.619 6.97 0.00 44.61 3.01
5022 7191 2.171659 TGCTTGGTTGTCACCTGACTTA 59.828 45.455 6.97 0.00 44.61 2.24
5023 7192 3.181445 TGCTTGGTTGTCACCTGACTTAT 60.181 43.478 6.97 0.00 44.61 1.73
5024 7193 4.041075 TGCTTGGTTGTCACCTGACTTATA 59.959 41.667 6.97 0.00 44.61 0.98
5025 7194 5.001232 GCTTGGTTGTCACCTGACTTATAA 58.999 41.667 6.97 0.00 44.61 0.98
5026 7195 5.122396 GCTTGGTTGTCACCTGACTTATAAG 59.878 44.000 11.05 11.05 44.61 1.73
5027 7196 5.160607 TGGTTGTCACCTGACTTATAAGG 57.839 43.478 16.73 2.04 44.61 2.69
5028 7197 4.019681 TGGTTGTCACCTGACTTATAAGGG 60.020 45.833 16.73 10.47 44.61 3.95
5029 7198 3.906720 TGTCACCTGACTTATAAGGGC 57.093 47.619 16.73 8.72 44.99 5.19
5030 7199 3.178046 TGTCACCTGACTTATAAGGGCA 58.822 45.455 16.73 12.48 44.99 5.36
5031 7200 3.780294 TGTCACCTGACTTATAAGGGCAT 59.220 43.478 16.73 0.00 44.99 4.40
5032 7201 4.141711 TGTCACCTGACTTATAAGGGCATC 60.142 45.833 16.73 5.76 44.99 3.91
5033 7202 4.101741 GTCACCTGACTTATAAGGGCATCT 59.898 45.833 16.73 0.00 41.65 2.90
5034 7203 4.345257 TCACCTGACTTATAAGGGCATCTC 59.655 45.833 16.73 4.74 37.94 2.75
5035 7204 3.648545 ACCTGACTTATAAGGGCATCTCC 59.351 47.826 16.73 0.00 37.94 3.71
5036 7205 3.648067 CCTGACTTATAAGGGCATCTCCA 59.352 47.826 16.73 1.58 36.21 3.86
5037 7206 4.262808 CCTGACTTATAAGGGCATCTCCAG 60.263 50.000 16.73 9.34 36.21 3.86
5038 7207 3.071602 TGACTTATAAGGGCATCTCCAGC 59.928 47.826 16.73 0.00 36.21 4.85
5044 7213 2.268920 GGCATCTCCAGCCGTTGA 59.731 61.111 0.00 0.00 43.15 3.18
5045 7214 1.817099 GGCATCTCCAGCCGTTGAG 60.817 63.158 0.00 0.00 43.15 3.02
5046 7215 2.467826 GCATCTCCAGCCGTTGAGC 61.468 63.158 0.00 0.00 0.00 4.26
5047 7216 1.817099 CATCTCCAGCCGTTGAGCC 60.817 63.158 0.00 0.00 0.00 4.70
5048 7217 3.036429 ATCTCCAGCCGTTGAGCCC 62.036 63.158 0.00 0.00 0.00 5.19
5049 7218 4.785453 CTCCAGCCGTTGAGCCCC 62.785 72.222 0.00 0.00 0.00 5.80
5064 7233 4.894719 CCCCCAGGAGGCATTTTT 57.105 55.556 0.00 0.00 33.47 1.94
5095 7264 3.758931 GGGCTGCCGGCGAAAATT 61.759 61.111 23.90 0.00 42.94 1.82
5096 7265 2.261361 GGCTGCCGGCGAAAATTT 59.739 55.556 23.90 0.00 42.94 1.82
5097 7266 1.374125 GGCTGCCGGCGAAAATTTT 60.374 52.632 23.90 2.28 42.94 1.82
5098 7267 1.625759 GGCTGCCGGCGAAAATTTTG 61.626 55.000 23.90 2.31 42.94 2.44
5099 7268 0.943835 GCTGCCGGCGAAAATTTTGT 60.944 50.000 23.90 0.00 0.00 2.83
5100 7269 1.059942 CTGCCGGCGAAAATTTTGTC 58.940 50.000 23.90 1.79 0.00 3.18
5101 7270 0.385751 TGCCGGCGAAAATTTTGTCA 59.614 45.000 23.90 0.00 0.00 3.58
5102 7271 1.000283 TGCCGGCGAAAATTTTGTCAT 60.000 42.857 23.90 0.00 0.00 3.06
5103 7272 1.389784 GCCGGCGAAAATTTTGTCATG 59.610 47.619 12.58 0.00 0.00 3.07
5104 7273 1.389784 CCGGCGAAAATTTTGTCATGC 59.610 47.619 9.30 4.42 0.00 4.06
5105 7274 1.057566 CGGCGAAAATTTTGTCATGCG 59.942 47.619 8.47 5.65 0.00 4.73
5106 7275 2.323959 GGCGAAAATTTTGTCATGCGA 58.676 42.857 8.47 0.00 0.00 5.10
5107 7276 2.728839 GGCGAAAATTTTGTCATGCGAA 59.271 40.909 8.47 0.00 0.00 4.70
5108 7277 3.421698 GGCGAAAATTTTGTCATGCGAAC 60.422 43.478 8.47 0.00 0.00 3.95
5109 7278 3.714899 GCGAAAATTTTGTCATGCGAACG 60.715 43.478 8.47 2.75 0.00 3.95
5110 7279 3.661728 CGAAAATTTTGTCATGCGAACGA 59.338 39.130 8.47 0.00 0.00 3.85
5111 7280 4.201298 CGAAAATTTTGTCATGCGAACGAG 60.201 41.667 8.47 0.00 0.00 4.18
5112 7281 4.481930 AAATTTTGTCATGCGAACGAGA 57.518 36.364 0.00 0.00 0.00 4.04
5113 7282 4.481930 AATTTTGTCATGCGAACGAGAA 57.518 36.364 0.00 0.00 0.00 2.87
5114 7283 3.953874 TTTTGTCATGCGAACGAGAAA 57.046 38.095 0.00 0.00 0.00 2.52
5115 7284 3.953874 TTTGTCATGCGAACGAGAAAA 57.046 38.095 0.00 0.00 0.00 2.29
5116 7285 4.481930 TTTGTCATGCGAACGAGAAAAT 57.518 36.364 0.00 0.00 0.00 1.82
5117 7286 3.722555 TGTCATGCGAACGAGAAAATC 57.277 42.857 0.00 0.00 0.00 2.17
5118 7287 3.325870 TGTCATGCGAACGAGAAAATCT 58.674 40.909 0.00 0.00 0.00 2.40
5119 7288 3.367932 TGTCATGCGAACGAGAAAATCTC 59.632 43.478 0.00 0.00 40.06 2.75
5120 7289 2.930040 TCATGCGAACGAGAAAATCTCC 59.070 45.455 0.00 0.00 40.34 3.71
5121 7290 2.448926 TGCGAACGAGAAAATCTCCA 57.551 45.000 0.00 0.00 40.34 3.86
5122 7291 2.337583 TGCGAACGAGAAAATCTCCAG 58.662 47.619 0.00 0.00 40.34 3.86
5123 7292 1.061276 GCGAACGAGAAAATCTCCAGC 59.939 52.381 0.00 0.00 40.34 4.85
5124 7293 1.661112 CGAACGAGAAAATCTCCAGCC 59.339 52.381 1.98 0.00 40.34 4.85
5125 7294 1.661112 GAACGAGAAAATCTCCAGCCG 59.339 52.381 1.98 0.00 40.34 5.52
5126 7295 0.608640 ACGAGAAAATCTCCAGCCGT 59.391 50.000 1.98 0.00 40.34 5.68
5127 7296 1.002087 ACGAGAAAATCTCCAGCCGTT 59.998 47.619 1.98 0.00 40.34 4.44
5128 7297 2.076863 CGAGAAAATCTCCAGCCGTTT 58.923 47.619 1.98 0.00 40.34 3.60
5129 7298 2.094417 CGAGAAAATCTCCAGCCGTTTC 59.906 50.000 1.98 0.00 40.34 2.78
5130 7299 2.420372 GAGAAAATCTCCAGCCGTTTCC 59.580 50.000 0.00 0.00 37.55 3.13
5131 7300 2.040412 AGAAAATCTCCAGCCGTTTCCT 59.960 45.455 0.00 0.00 0.00 3.36
5132 7301 2.115343 AAATCTCCAGCCGTTTCCTC 57.885 50.000 0.00 0.00 0.00 3.71
5133 7302 0.253327 AATCTCCAGCCGTTTCCTCC 59.747 55.000 0.00 0.00 0.00 4.30
5134 7303 1.627297 ATCTCCAGCCGTTTCCTCCC 61.627 60.000 0.00 0.00 0.00 4.30
5135 7304 3.327404 TCCAGCCGTTTCCTCCCC 61.327 66.667 0.00 0.00 0.00 4.81
5136 7305 3.646715 CCAGCCGTTTCCTCCCCA 61.647 66.667 0.00 0.00 0.00 4.96
5137 7306 2.434331 CAGCCGTTTCCTCCCCAA 59.566 61.111 0.00 0.00 0.00 4.12
5138 7307 1.675641 CAGCCGTTTCCTCCCCAAG 60.676 63.158 0.00 0.00 0.00 3.61
5139 7308 3.062466 GCCGTTTCCTCCCCAAGC 61.062 66.667 0.00 0.00 0.00 4.01
5140 7309 2.746277 CCGTTTCCTCCCCAAGCG 60.746 66.667 0.00 0.00 0.00 4.68
5141 7310 2.345991 CGTTTCCTCCCCAAGCGA 59.654 61.111 0.00 0.00 29.78 4.93
5142 7311 1.741770 CGTTTCCTCCCCAAGCGAG 60.742 63.158 0.00 0.00 29.78 5.03
5144 7313 3.268103 TTTCCTCCCCAAGCGAGGC 62.268 63.158 0.00 0.00 45.66 4.70
5145 7314 4.722535 TCCTCCCCAAGCGAGGCT 62.723 66.667 0.00 0.00 45.66 4.58
5146 7315 4.479993 CCTCCCCAAGCGAGGCTG 62.480 72.222 0.00 0.00 40.55 4.85
5147 7316 3.710722 CTCCCCAAGCGAGGCTGT 61.711 66.667 0.00 0.00 39.62 4.40
5148 7317 3.672295 CTCCCCAAGCGAGGCTGTC 62.672 68.421 0.00 0.00 39.62 3.51
5157 7326 4.500116 GAGGCTGTCGTCCTCGCC 62.500 72.222 0.00 0.00 40.51 5.54
5161 7330 4.778415 CTGTCGTCCTCGCCACCG 62.778 72.222 0.00 0.00 36.96 4.94
5163 7332 4.773117 GTCGTCCTCGCCACCGTC 62.773 72.222 0.00 0.00 36.96 4.79
5173 7342 4.430765 CCACCGTCCCGTCCGAAG 62.431 72.222 0.00 0.00 0.00 3.79
5210 7379 3.494336 CGCTTCGCCTTCCAGCAG 61.494 66.667 0.00 0.00 32.71 4.24
5211 7380 3.808656 GCTTCGCCTTCCAGCAGC 61.809 66.667 0.00 0.00 33.45 5.25
5212 7381 2.359107 CTTCGCCTTCCAGCAGCA 60.359 61.111 0.00 0.00 0.00 4.41
5213 7382 2.669569 TTCGCCTTCCAGCAGCAC 60.670 61.111 0.00 0.00 0.00 4.40
5216 7385 3.426568 GCCTTCCAGCAGCACGTC 61.427 66.667 0.00 0.00 0.00 4.34
5217 7386 2.743928 CCTTCCAGCAGCACGTCC 60.744 66.667 0.00 0.00 0.00 4.79
5218 7387 2.031012 CTTCCAGCAGCACGTCCA 59.969 61.111 0.00 0.00 0.00 4.02
5219 7388 1.376424 CTTCCAGCAGCACGTCCAT 60.376 57.895 0.00 0.00 0.00 3.41
5220 7389 1.642037 CTTCCAGCAGCACGTCCATG 61.642 60.000 0.00 0.00 0.00 3.66
5221 7390 3.807538 CCAGCAGCACGTCCATGC 61.808 66.667 7.84 7.84 46.50 4.06
5229 7398 3.387091 ACGTCCATGCTGCCCGTA 61.387 61.111 0.00 0.00 0.00 4.02
5230 7399 2.586079 CGTCCATGCTGCCCGTAG 60.586 66.667 0.00 0.00 0.00 3.51
5231 7400 2.584608 GTCCATGCTGCCCGTAGT 59.415 61.111 0.00 0.00 0.00 2.73
5232 7401 1.521681 GTCCATGCTGCCCGTAGTC 60.522 63.158 0.00 0.00 0.00 2.59
5233 7402 2.203070 CCATGCTGCCCGTAGTCC 60.203 66.667 0.00 0.00 0.00 3.85
5234 7403 2.203070 CATGCTGCCCGTAGTCCC 60.203 66.667 0.00 0.00 0.00 4.46
5235 7404 3.849951 ATGCTGCCCGTAGTCCCG 61.850 66.667 0.00 0.00 0.00 5.14
5238 7407 4.208686 CTGCCCGTAGTCCCGCTC 62.209 72.222 0.00 0.00 0.00 5.03
5241 7410 3.217743 CCCGTAGTCCCGCTCCTC 61.218 72.222 0.00 0.00 0.00 3.71
5242 7411 3.584052 CCGTAGTCCCGCTCCTCG 61.584 72.222 0.00 0.00 38.08 4.63
5243 7412 4.253257 CGTAGTCCCGCTCCTCGC 62.253 72.222 0.00 0.00 36.73 5.03
5286 7455 2.879907 CCGTTGGCATGCAGGAAG 59.120 61.111 21.36 6.59 0.00 3.46
5287 7456 2.703798 CCGTTGGCATGCAGGAAGG 61.704 63.158 21.36 11.91 0.00 3.46
5288 7457 2.575461 GTTGGCATGCAGGAAGGC 59.425 61.111 21.36 0.00 0.00 4.35
5289 7458 2.681064 TTGGCATGCAGGAAGGCC 60.681 61.111 21.36 5.84 46.58 5.19
5292 7461 3.512516 GCATGCAGGAAGGCCGTC 61.513 66.667 14.21 10.61 39.96 4.79
5293 7462 3.197790 CATGCAGGAAGGCCGTCG 61.198 66.667 12.79 0.79 39.96 5.12
5294 7463 3.706373 ATGCAGGAAGGCCGTCGT 61.706 61.111 12.79 10.49 39.96 4.34
5295 7464 3.665675 ATGCAGGAAGGCCGTCGTC 62.666 63.158 11.11 7.27 39.96 4.20
5299 7468 4.814294 GGAAGGCCGTCGTCGCAT 62.814 66.667 12.79 0.00 35.54 4.73
5300 7469 3.255379 GAAGGCCGTCGTCGCATC 61.255 66.667 1.94 0.00 35.54 3.91
5340 7509 2.125912 CGACCTTCTCGTGCCCTG 60.126 66.667 0.00 0.00 37.64 4.45
5341 7510 2.435059 GACCTTCTCGTGCCCTGC 60.435 66.667 0.00 0.00 0.00 4.85
5342 7511 3.240134 GACCTTCTCGTGCCCTGCA 62.240 63.158 0.00 0.00 35.60 4.41
5374 7543 4.489771 CTGGCCATGTCCCCGTCC 62.490 72.222 5.51 0.00 0.00 4.79
5379 7548 4.157120 CATGTCCCCGTCCCCGTC 62.157 72.222 0.00 0.00 0.00 4.79
5385 7554 2.829914 CCCGTCCCCGTCGTCATA 60.830 66.667 0.00 0.00 0.00 2.15
5386 7555 2.198287 CCCGTCCCCGTCGTCATAT 61.198 63.158 0.00 0.00 0.00 1.78
5387 7556 1.285023 CCGTCCCCGTCGTCATATC 59.715 63.158 0.00 0.00 0.00 1.63
5388 7557 1.285023 CGTCCCCGTCGTCATATCC 59.715 63.158 0.00 0.00 0.00 2.59
5389 7558 1.664306 GTCCCCGTCGTCATATCCC 59.336 63.158 0.00 0.00 0.00 3.85
5390 7559 1.532316 TCCCCGTCGTCATATCCCC 60.532 63.158 0.00 0.00 0.00 4.81
5391 7560 2.649034 CCCGTCGTCATATCCCCG 59.351 66.667 0.00 0.00 0.00 5.73
5392 7561 2.198287 CCCGTCGTCATATCCCCGT 61.198 63.158 0.00 0.00 0.00 5.28
5393 7562 1.285023 CCGTCGTCATATCCCCGTC 59.715 63.158 0.00 0.00 0.00 4.79
5394 7563 1.285023 CGTCGTCATATCCCCGTCC 59.715 63.158 0.00 0.00 0.00 4.79
5395 7564 1.170919 CGTCGTCATATCCCCGTCCT 61.171 60.000 0.00 0.00 0.00 3.85
5396 7565 0.597072 GTCGTCATATCCCCGTCCTC 59.403 60.000 0.00 0.00 0.00 3.71
5397 7566 0.887836 TCGTCATATCCCCGTCCTCG 60.888 60.000 0.00 0.00 0.00 4.63
5398 7567 1.170919 CGTCATATCCCCGTCCTCGT 61.171 60.000 0.00 0.00 35.01 4.18
5399 7568 0.597072 GTCATATCCCCGTCCTCGTC 59.403 60.000 0.00 0.00 35.01 4.20
5400 7569 0.887836 TCATATCCCCGTCCTCGTCG 60.888 60.000 0.00 0.00 35.01 5.12
5401 7570 1.150081 ATATCCCCGTCCTCGTCGT 59.850 57.895 0.00 0.00 35.01 4.34
5402 7571 0.888285 ATATCCCCGTCCTCGTCGTC 60.888 60.000 0.00 0.00 35.01 4.20
5403 7572 2.947938 TATCCCCGTCCTCGTCGTCC 62.948 65.000 0.00 0.00 35.01 4.79
5405 7574 3.367743 CCCGTCCTCGTCGTCCAA 61.368 66.667 0.00 0.00 35.01 3.53
5406 7575 2.178521 CCGTCCTCGTCGTCCAAG 59.821 66.667 0.00 0.00 35.01 3.61
5407 7576 2.178521 CGTCCTCGTCGTCCAAGG 59.821 66.667 0.00 0.00 0.00 3.61
5408 7577 2.126031 GTCCTCGTCGTCCAAGGC 60.126 66.667 0.00 0.00 0.00 4.35
5409 7578 3.379445 TCCTCGTCGTCCAAGGCC 61.379 66.667 0.00 0.00 0.00 5.19
5410 7579 4.796231 CCTCGTCGTCCAAGGCCG 62.796 72.222 0.00 0.00 0.00 6.13
5411 7580 4.796231 CTCGTCGTCCAAGGCCGG 62.796 72.222 0.00 0.00 0.00 6.13
5417 7586 4.021925 GTCCAAGGCCGGTGCTCT 62.022 66.667 1.90 0.00 37.74 4.09
5418 7587 3.706373 TCCAAGGCCGGTGCTCTC 61.706 66.667 1.90 0.00 37.74 3.20
5419 7588 4.785453 CCAAGGCCGGTGCTCTCC 62.785 72.222 1.90 0.00 37.74 3.71
5420 7589 4.020617 CAAGGCCGGTGCTCTCCA 62.021 66.667 1.90 0.00 37.74 3.86
5421 7590 3.249189 AAGGCCGGTGCTCTCCAA 61.249 61.111 1.90 0.00 37.74 3.53
5422 7591 3.553095 AAGGCCGGTGCTCTCCAAC 62.553 63.158 1.90 0.00 37.74 3.77
5423 7592 4.021925 GGCCGGTGCTCTCCAACT 62.022 66.667 1.90 0.00 37.74 3.16
5424 7593 2.435059 GCCGGTGCTCTCCAACTC 60.435 66.667 1.90 0.00 33.53 3.01
5425 7594 2.266055 CCGGTGCTCTCCAACTCC 59.734 66.667 0.00 0.00 0.00 3.85
5426 7595 2.125912 CGGTGCTCTCCAACTCCG 60.126 66.667 0.00 0.00 36.71 4.63
5427 7596 2.932234 CGGTGCTCTCCAACTCCGT 61.932 63.158 0.00 0.00 37.96 4.69
5428 7597 1.374758 GGTGCTCTCCAACTCCGTG 60.375 63.158 0.00 0.00 0.00 4.94
5429 7598 1.367840 GTGCTCTCCAACTCCGTGT 59.632 57.895 0.00 0.00 0.00 4.49
5430 7599 0.946221 GTGCTCTCCAACTCCGTGTG 60.946 60.000 0.00 0.00 0.00 3.82
5431 7600 1.374758 GCTCTCCAACTCCGTGTGG 60.375 63.158 0.00 0.00 0.00 4.17
5432 7601 1.293498 CTCTCCAACTCCGTGTGGG 59.707 63.158 0.00 0.00 41.25 4.61
5433 7602 1.152419 TCTCCAACTCCGTGTGGGA 60.152 57.895 2.50 2.50 46.22 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 144 4.329545 GGTGGAGAGGCGTTGGCA 62.330 66.667 0.00 0.00 42.47 4.92
498 516 2.646719 GTGTAGTCACCGCCGTCA 59.353 61.111 0.00 0.00 38.51 4.35
625 657 6.299266 GCGAGTTCGTTCAAACTTAAACATAC 59.701 38.462 3.27 0.00 39.55 2.39
739 773 3.183259 GCTAAACCGCGCATTGGA 58.817 55.556 8.75 0.00 0.00 3.53
842 877 4.649674 GGTGGGGAGACTTTCTTTTTCTTT 59.350 41.667 0.00 0.00 0.00 2.52
843 878 4.215908 GGTGGGGAGACTTTCTTTTTCTT 58.784 43.478 0.00 0.00 0.00 2.52
844 879 3.436615 GGGTGGGGAGACTTTCTTTTTCT 60.437 47.826 0.00 0.00 0.00 2.52
845 880 2.891580 GGGTGGGGAGACTTTCTTTTTC 59.108 50.000 0.00 0.00 0.00 2.29
846 881 2.425829 GGGGTGGGGAGACTTTCTTTTT 60.426 50.000 0.00 0.00 0.00 1.94
847 882 1.147191 GGGGTGGGGAGACTTTCTTTT 59.853 52.381 0.00 0.00 0.00 2.27
848 883 0.778083 GGGGTGGGGAGACTTTCTTT 59.222 55.000 0.00 0.00 0.00 2.52
849 884 0.402861 TGGGGTGGGGAGACTTTCTT 60.403 55.000 0.00 0.00 0.00 2.52
850 885 0.842467 CTGGGGTGGGGAGACTTTCT 60.842 60.000 0.00 0.00 0.00 2.52
851 886 1.134438 ACTGGGGTGGGGAGACTTTC 61.134 60.000 0.00 0.00 0.00 2.62
852 887 1.072930 ACTGGGGTGGGGAGACTTT 60.073 57.895 0.00 0.00 0.00 2.66
853 888 1.847968 CACTGGGGTGGGGAGACTT 60.848 63.158 0.00 0.00 39.59 3.01
854 889 2.203998 CACTGGGGTGGGGAGACT 60.204 66.667 0.00 0.00 39.59 3.24
855 890 2.203938 TCACTGGGGTGGGGAGAC 60.204 66.667 0.00 0.00 43.17 3.36
856 891 2.122729 CTCACTGGGGTGGGGAGA 59.877 66.667 0.00 0.00 43.17 3.71
861 896 1.073199 GTTGGACTCACTGGGGTGG 59.927 63.158 0.00 0.00 43.17 4.61
862 897 1.073199 GGTTGGACTCACTGGGGTG 59.927 63.158 0.00 0.00 44.23 4.61
863 898 2.154074 GGGTTGGACTCACTGGGGT 61.154 63.158 0.00 0.00 0.00 4.95
864 899 2.757077 GGGTTGGACTCACTGGGG 59.243 66.667 0.00 0.00 0.00 4.96
865 900 2.347490 CGGGTTGGACTCACTGGG 59.653 66.667 0.00 0.00 0.00 4.45
866 901 2.347490 CCGGGTTGGACTCACTGG 59.653 66.667 0.00 0.00 42.00 4.00
867 902 1.004918 GACCGGGTTGGACTCACTG 60.005 63.158 6.32 0.00 42.00 3.66
885 920 0.099082 GTTAGACTCGACTGGGCTCG 59.901 60.000 0.00 0.00 34.83 5.03
889 924 1.835494 TCTGGTTAGACTCGACTGGG 58.165 55.000 0.00 0.00 0.00 4.45
924 959 3.828875 GAAGGAGTCGATGGAAGGAAT 57.171 47.619 0.00 0.00 0.00 3.01
1208 1518 2.949106 CCTTGTGCTGCTTCGGTG 59.051 61.111 0.00 0.00 0.00 4.94
1209 1519 2.980233 GCCTTGTGCTGCTTCGGT 60.980 61.111 0.00 0.00 36.87 4.69
1213 1523 2.986306 GCATCGCCTTGTGCTGCTT 61.986 57.895 0.00 0.00 37.95 3.91
1434 1747 2.240500 GGCGATGCAGACGATGACC 61.241 63.158 17.88 7.30 0.00 4.02
1452 1765 2.034066 AACATGACCCGCCACAGG 59.966 61.111 0.00 0.00 0.00 4.00
1455 1768 3.124921 CCGAACATGACCCGCCAC 61.125 66.667 0.00 0.00 0.00 5.01
1542 1855 1.153647 CACAGCGAAGGCGACCATA 60.154 57.895 0.00 0.00 46.35 2.74
1564 1877 1.552792 GTGAGACAGAGAAAGGGAGGG 59.447 57.143 0.00 0.00 0.00 4.30
1565 1878 2.534990 AGTGAGACAGAGAAAGGGAGG 58.465 52.381 0.00 0.00 0.00 4.30
1571 1884 6.901300 TCCTATAGCTAGTGAGACAGAGAAA 58.099 40.000 0.00 0.00 0.00 2.52
1634 3720 1.344953 ATTGTGAGCATAGCCCCCGA 61.345 55.000 0.00 0.00 0.00 5.14
1635 3721 0.886490 GATTGTGAGCATAGCCCCCG 60.886 60.000 0.00 0.00 0.00 5.73
1636 3722 0.475906 AGATTGTGAGCATAGCCCCC 59.524 55.000 0.00 0.00 0.00 5.40
1656 3742 3.571590 ACCCAAAATACTTCACCAAGCA 58.428 40.909 0.00 0.00 32.09 3.91
1672 3758 7.832187 CCTAGAATAACATTGAAGGTTACCCAA 59.168 37.037 4.45 0.00 33.89 4.12
1699 3785 1.072489 TGCACCCTACGAAATGAACCA 59.928 47.619 0.00 0.00 0.00 3.67
1756 3844 2.029970 GCAATTTTGGAAGCATGCGATG 59.970 45.455 13.01 3.54 0.00 3.84
1759 3847 0.722848 GGCAATTTTGGAAGCATGCG 59.277 50.000 13.01 0.00 34.73 4.73
1760 3848 1.465777 GTGGCAATTTTGGAAGCATGC 59.534 47.619 10.51 10.51 0.00 4.06
1828 3916 0.590481 CATTGCATGGATCACACGCG 60.590 55.000 3.53 3.53 0.00 6.01
1877 3965 8.565896 AAAAATATCTTCACACTGATAGCACA 57.434 30.769 0.00 0.00 0.00 4.57
1908 3996 6.642540 TGCAGCTCAGATGTAATAGTAAATCG 59.357 38.462 0.00 0.00 30.17 3.34
1936 4024 5.245977 AGCACATAACCAAAGTAATGGCTTT 59.754 36.000 0.00 0.00 44.75 3.51
1958 4046 7.996385 TCTTAAGCAATCCAAGGTATAAAAGC 58.004 34.615 0.00 0.00 0.00 3.51
1960 4048 8.745590 GGTTCTTAAGCAATCCAAGGTATAAAA 58.254 33.333 0.00 0.00 0.00 1.52
1961 4049 7.891183 TGGTTCTTAAGCAATCCAAGGTATAAA 59.109 33.333 0.00 0.00 35.70 1.40
2106 4195 3.136443 CCAGGGCAATCAACCACTATCTA 59.864 47.826 0.00 0.00 0.00 1.98
2154 4252 8.402472 GTTTGTTGCACTATATGGTAAAGCATA 58.598 33.333 4.48 4.48 0.00 3.14
2171 4269 1.666700 GTGTACACTCGGTTTGTTGCA 59.333 47.619 18.92 0.00 0.00 4.08
2198 4296 6.183360 GCAATTAACTGGCAGTGATATCTTGT 60.183 38.462 22.83 4.28 0.00 3.16
2226 4324 3.643199 TGCATATCCAGTACTTTGGCA 57.357 42.857 0.00 0.00 38.16 4.92
2243 4341 2.351418 GCGACACTGTTATAAGCATGCA 59.649 45.455 21.98 0.00 0.00 3.96
2258 4356 0.512952 GACACATGAACAGGCGACAC 59.487 55.000 0.00 0.00 0.00 3.67
2544 4653 6.363882 TGCCACTCAATGAATATCCACATAA 58.636 36.000 0.00 0.00 0.00 1.90
2682 4795 3.421826 CATAAATATGAACGAGCGACGGC 60.422 47.826 10.57 0.00 40.03 5.68
2726 4839 4.929146 AAGAGGCCCAAATTACTGTAGT 57.071 40.909 0.00 0.00 0.00 2.73
2845 4974 6.987404 GTCTAACCCATCTTGAGAAGAATACC 59.013 42.308 0.00 0.00 41.63 2.73
2863 4992 5.310720 AGCAAAATTTCCATCGTCTAACC 57.689 39.130 0.00 0.00 0.00 2.85
3150 5301 3.130340 TGTGATGAGCTATAACGTGCAGA 59.870 43.478 0.00 0.00 0.00 4.26
3152 5303 3.518634 TGTGATGAGCTATAACGTGCA 57.481 42.857 0.00 0.00 0.00 4.57
3349 5500 3.488310 GCGTACATACCCTATGACAAACG 59.512 47.826 0.00 0.00 39.45 3.60
3372 5523 0.878416 TTATGGTGAACCTTGCACGC 59.122 50.000 0.37 0.00 37.13 5.34
3483 5634 6.144563 CACCAGACATAACATATGCTCTAACG 59.855 42.308 1.58 0.00 0.00 3.18
3486 5637 5.838521 TCCACCAGACATAACATATGCTCTA 59.161 40.000 1.58 0.00 0.00 2.43
3714 5865 7.484993 AGGTGCGGTACATAATTATATGGTA 57.515 36.000 0.00 0.00 42.71 3.25
3738 5889 7.384439 TGTTCATGTTTTCACTCACACTAAA 57.616 32.000 0.00 0.00 0.00 1.85
3756 5909 7.336931 ACTCTACCTTCGCAATAAATTGTTCAT 59.663 33.333 4.71 0.00 39.88 2.57
3770 5924 3.613299 GCTTCACTTAACTCTACCTTCGC 59.387 47.826 0.00 0.00 0.00 4.70
3826 5980 5.887598 AGGTGAGCATAGATTGTGCATTAAA 59.112 36.000 0.00 0.00 44.87 1.52
3841 5995 4.082026 GCCATTAAAAACTGAGGTGAGCAT 60.082 41.667 0.00 0.00 0.00 3.79
3842 5996 3.255642 GCCATTAAAAACTGAGGTGAGCA 59.744 43.478 0.00 0.00 0.00 4.26
3843 5997 3.255642 TGCCATTAAAAACTGAGGTGAGC 59.744 43.478 0.00 0.00 0.00 4.26
3844 5998 4.616835 GCTGCCATTAAAAACTGAGGTGAG 60.617 45.833 0.00 0.00 0.00 3.51
3845 5999 3.255642 GCTGCCATTAAAAACTGAGGTGA 59.744 43.478 0.00 0.00 0.00 4.02
3846 6000 3.578688 GCTGCCATTAAAAACTGAGGTG 58.421 45.455 0.00 0.00 0.00 4.00
3847 6001 2.562738 GGCTGCCATTAAAAACTGAGGT 59.437 45.455 15.17 0.00 0.00 3.85
3848 6002 2.094026 GGGCTGCCATTAAAAACTGAGG 60.094 50.000 22.05 0.00 0.00 3.86
3850 6004 2.888212 AGGGCTGCCATTAAAAACTGA 58.112 42.857 22.05 0.00 0.00 3.41
3851 6005 3.683365 AAGGGCTGCCATTAAAAACTG 57.317 42.857 18.08 0.00 0.00 3.16
3852 6006 4.141505 ACAAAAGGGCTGCCATTAAAAACT 60.142 37.500 19.88 1.15 0.00 2.66
3853 6007 4.133820 ACAAAAGGGCTGCCATTAAAAAC 58.866 39.130 19.88 0.00 0.00 2.43
3859 6015 2.603075 TCTACAAAAGGGCTGCCATT 57.397 45.000 22.05 17.94 0.00 3.16
3860 6016 2.603075 TTCTACAAAAGGGCTGCCAT 57.397 45.000 22.05 11.43 0.00 4.40
3928 6084 2.351726 GACCAGTCGACCATAATGTTGC 59.648 50.000 13.01 0.00 0.00 4.17
3959 6115 7.149973 GGGGAAATACCAAAACAAACTAGTTC 58.850 38.462 8.95 0.00 41.20 3.01
3962 6118 6.658188 TGGGGAAATACCAAAACAAACTAG 57.342 37.500 0.00 0.00 41.20 2.57
3977 6133 0.643822 ATGGCAAGGGATGGGGAAAT 59.356 50.000 0.00 0.00 0.00 2.17
3981 6137 2.199535 GGATGGCAAGGGATGGGG 59.800 66.667 0.00 0.00 0.00 4.96
3987 6143 0.527565 CGTTTTCTGGATGGCAAGGG 59.472 55.000 0.00 0.00 0.00 3.95
4040 6204 9.093458 TCAAGCAGGATGAGATCTTGTATTATA 57.907 33.333 0.00 0.00 39.69 0.98
4041 6205 7.971201 TCAAGCAGGATGAGATCTTGTATTAT 58.029 34.615 0.00 0.00 39.69 1.28
4047 6211 4.403585 TCTCAAGCAGGATGAGATCTTG 57.596 45.455 0.00 0.00 46.23 3.02
4070 6234 9.631452 GGATAATAATACCACTCGTTTACTACC 57.369 37.037 0.00 0.00 0.00 3.18
4082 6246 4.196971 GCCATCGGGGATAATAATACCAC 58.803 47.826 0.00 0.00 37.93 4.16
4095 6259 0.249955 AAAATTTGCTGCCATCGGGG 59.750 50.000 0.00 0.00 40.85 5.73
4099 6263 3.056322 AGGTCAGAAAATTTGCTGCCATC 60.056 43.478 27.57 13.49 33.58 3.51
4103 6267 6.393171 AGATTAAGGTCAGAAAATTTGCTGC 58.607 36.000 19.94 14.65 32.27 5.25
4124 6288 6.737720 TGTCATACTGCAGAGGAATTAGAT 57.262 37.500 23.35 0.00 0.00 1.98
4133 6297 3.556365 CAGCTTCATGTCATACTGCAGAG 59.444 47.826 23.35 9.98 0.00 3.35
4135 6299 3.946308 CAGCTTCATGTCATACTGCAG 57.054 47.619 13.48 13.48 0.00 4.41
4158 6322 0.930310 CCATCGGTATGTCAACAGCG 59.070 55.000 3.69 3.69 37.02 5.18
4209 6373 1.248785 TGTACTCCTGCTCGTCACCC 61.249 60.000 0.00 0.00 0.00 4.61
4212 6376 0.888619 CCTTGTACTCCTGCTCGTCA 59.111 55.000 0.00 0.00 0.00 4.35
4233 6397 1.460699 GGATATCAAGCCCCCACCC 59.539 63.158 4.83 0.00 0.00 4.61
4239 6403 0.952984 GCAGCTCGGATATCAAGCCC 60.953 60.000 19.99 11.47 36.69 5.19
4260 6424 4.467795 GCCATAGCCTTCACTATAGGATCA 59.532 45.833 4.43 0.00 34.56 2.92
4335 6499 1.674057 CTCCTCTTGTTCCCTGCGT 59.326 57.895 0.00 0.00 0.00 5.24
4344 6508 1.203237 TCTTCCTCAGCCTCCTCTTGT 60.203 52.381 0.00 0.00 0.00 3.16
4346 6510 1.622173 CCTCTTCCTCAGCCTCCTCTT 60.622 57.143 0.00 0.00 0.00 2.85
4502 6667 1.903183 AGTGAGGAGGTAAAGTGGAGC 59.097 52.381 0.00 0.00 0.00 4.70
4553 6718 0.726827 GATGCAATCTTTCCGTCGCA 59.273 50.000 0.00 0.00 41.17 5.10
4700 6865 2.876581 CACCAAAAAGGGAAGGCTACT 58.123 47.619 0.00 0.00 43.89 2.57
4735 6900 1.536766 CTCAAAGCATCCGAAAGCACA 59.463 47.619 0.00 0.00 0.00 4.57
4779 6946 4.500396 CCGATGGGTGCAAAATGC 57.500 55.556 0.00 0.00 45.29 3.56
4794 6961 3.564225 GGACCTATCAAGCCAAATAACCG 59.436 47.826 0.00 0.00 0.00 4.44
4840 7007 5.483685 ACTGGTAAGTGCACAGAAAGATA 57.516 39.130 21.04 0.00 34.48 1.98
4870 7038 7.973944 ACAGTTAGAAAAATGTGTCTCCAAAAC 59.026 33.333 0.00 0.00 42.01 2.43
4873 7041 7.639113 AACAGTTAGAAAAATGTGTCTCCAA 57.361 32.000 0.00 0.00 42.73 3.53
4882 7050 9.846248 AGCTATAGCAAAACAGTTAGAAAAATG 57.154 29.630 26.07 0.00 45.16 2.32
4884 7052 9.062524 TGAGCTATAGCAAAACAGTTAGAAAAA 57.937 29.630 26.07 0.00 45.16 1.94
4908 7076 2.170607 GCCCTTAGGTCACAGCTAATGA 59.829 50.000 0.00 0.00 37.52 2.57
4915 7084 0.693049 AACAGGCCCTTAGGTCACAG 59.307 55.000 0.00 0.00 41.85 3.66
4927 7096 2.897326 ACTTATTGGAACCAAACAGGCC 59.103 45.455 10.36 0.00 43.14 5.19
4928 7097 3.572255 TGACTTATTGGAACCAAACAGGC 59.428 43.478 10.36 11.26 43.14 4.85
4929 7098 4.022329 GGTGACTTATTGGAACCAAACAGG 60.022 45.833 10.36 5.07 45.67 4.00
4930 7099 4.827284 AGGTGACTTATTGGAACCAAACAG 59.173 41.667 10.36 11.01 37.44 3.16
4931 7100 4.582656 CAGGTGACTTATTGGAACCAAACA 59.417 41.667 10.36 0.00 40.21 2.83
4932 7101 4.825085 TCAGGTGACTTATTGGAACCAAAC 59.175 41.667 10.36 3.26 40.21 2.93
4933 7102 4.825085 GTCAGGTGACTTATTGGAACCAAA 59.175 41.667 10.36 0.00 41.65 3.28
4934 7103 4.394729 GTCAGGTGACTTATTGGAACCAA 58.605 43.478 8.75 8.75 41.65 3.67
4935 7104 4.015872 GTCAGGTGACTTATTGGAACCA 57.984 45.455 2.72 0.00 41.65 3.67
4963 7132 2.546789 CACGGGTTTTAAGTCACCTGAC 59.453 50.000 13.65 0.00 41.47 3.51
4964 7133 2.435069 TCACGGGTTTTAAGTCACCTGA 59.565 45.455 13.65 3.58 41.47 3.86
4965 7134 2.546789 GTCACGGGTTTTAAGTCACCTG 59.453 50.000 7.52 7.52 44.16 4.00
4966 7135 2.436911 AGTCACGGGTTTTAAGTCACCT 59.563 45.455 0.00 0.00 33.09 4.00
4967 7136 2.842457 AGTCACGGGTTTTAAGTCACC 58.158 47.619 0.00 0.00 0.00 4.02
4968 7137 7.386025 ACTTATAAGTCACGGGTTTTAAGTCAC 59.614 37.037 12.50 0.00 32.86 3.67
4969 7138 7.444299 ACTTATAAGTCACGGGTTTTAAGTCA 58.556 34.615 12.50 0.00 32.86 3.41
4970 7139 7.895975 ACTTATAAGTCACGGGTTTTAAGTC 57.104 36.000 12.50 0.00 32.86 3.01
4985 7154 3.262420 CAAGCAGGCGTGACTTATAAGT 58.738 45.455 18.05 18.05 43.16 2.24
4986 7155 2.609459 CCAAGCAGGCGTGACTTATAAG 59.391 50.000 11.29 11.05 0.00 1.73
4987 7156 2.027561 ACCAAGCAGGCGTGACTTATAA 60.028 45.455 11.29 0.00 43.14 0.98
4988 7157 1.553248 ACCAAGCAGGCGTGACTTATA 59.447 47.619 11.29 0.00 43.14 0.98
4989 7158 0.324943 ACCAAGCAGGCGTGACTTAT 59.675 50.000 11.29 2.84 43.14 1.73
4990 7159 0.107831 AACCAAGCAGGCGTGACTTA 59.892 50.000 11.29 0.00 43.14 2.24
4991 7160 1.152963 AACCAAGCAGGCGTGACTT 60.153 52.632 11.29 10.10 43.14 3.01
4992 7161 1.893808 CAACCAAGCAGGCGTGACT 60.894 57.895 11.29 4.05 43.14 3.41
4993 7162 2.117941 GACAACCAAGCAGGCGTGAC 62.118 60.000 11.29 1.53 43.14 3.67
4994 7163 1.891919 GACAACCAAGCAGGCGTGA 60.892 57.895 11.29 0.00 43.14 4.35
4995 7164 2.186160 TGACAACCAAGCAGGCGTG 61.186 57.895 1.01 1.01 43.14 5.34
4996 7165 2.186826 GTGACAACCAAGCAGGCGT 61.187 57.895 0.00 0.00 43.14 5.68
4997 7166 2.639286 GTGACAACCAAGCAGGCG 59.361 61.111 0.00 0.00 43.14 5.52
4998 7167 3.042560 GGTGACAACCAAGCAGGC 58.957 61.111 0.00 0.00 46.75 4.85
5010 7179 3.906720 TGCCCTTATAAGTCAGGTGAC 57.093 47.619 11.50 1.60 45.08 3.67
5011 7180 4.298626 AGATGCCCTTATAAGTCAGGTGA 58.701 43.478 11.50 0.00 0.00 4.02
5012 7181 4.503991 GGAGATGCCCTTATAAGTCAGGTG 60.504 50.000 11.50 0.00 0.00 4.00
5013 7182 3.648545 GGAGATGCCCTTATAAGTCAGGT 59.351 47.826 11.50 1.41 0.00 4.00
5014 7183 3.648067 TGGAGATGCCCTTATAAGTCAGG 59.352 47.826 11.50 6.79 34.97 3.86
5015 7184 4.802248 GCTGGAGATGCCCTTATAAGTCAG 60.802 50.000 11.50 1.49 34.97 3.51
5016 7185 3.071602 GCTGGAGATGCCCTTATAAGTCA 59.928 47.826 11.50 9.00 34.97 3.41
5017 7186 3.558109 GGCTGGAGATGCCCTTATAAGTC 60.558 52.174 11.50 2.60 44.32 3.01
5018 7187 2.373502 GGCTGGAGATGCCCTTATAAGT 59.626 50.000 11.50 0.00 44.32 2.24
5019 7188 3.064900 GGCTGGAGATGCCCTTATAAG 57.935 52.381 5.43 5.43 44.32 1.73
5027 7196 1.817099 CTCAACGGCTGGAGATGCC 60.817 63.158 0.00 0.00 46.42 4.40
5028 7197 2.467826 GCTCAACGGCTGGAGATGC 61.468 63.158 0.00 0.00 32.87 3.91
5029 7198 1.817099 GGCTCAACGGCTGGAGATG 60.817 63.158 0.00 0.00 32.87 2.90
5030 7199 2.586792 GGCTCAACGGCTGGAGAT 59.413 61.111 0.00 0.00 32.87 2.75
5031 7200 3.706373 GGGCTCAACGGCTGGAGA 61.706 66.667 0.00 0.00 38.46 3.71
5032 7201 4.785453 GGGGCTCAACGGCTGGAG 62.785 72.222 0.00 0.00 38.46 3.86
5047 7216 4.894719 AAAAATGCCTCCTGGGGG 57.105 55.556 8.74 8.74 35.12 5.40
5062 7231 3.130227 CCCCCAAACGGCGAAAAA 58.870 55.556 16.62 0.00 0.00 1.94
5078 7247 2.779951 AAAATTTTCGCCGGCAGCCC 62.780 55.000 28.98 0.00 38.78 5.19
5079 7248 1.374125 AAAATTTTCGCCGGCAGCC 60.374 52.632 28.98 0.00 38.78 4.85
5080 7249 0.943835 ACAAAATTTTCGCCGGCAGC 60.944 50.000 28.98 0.00 38.52 5.25
5081 7250 1.059942 GACAAAATTTTCGCCGGCAG 58.940 50.000 28.98 19.33 0.00 4.85
5082 7251 0.385751 TGACAAAATTTTCGCCGGCA 59.614 45.000 28.98 11.20 0.00 5.69
5083 7252 1.389784 CATGACAAAATTTTCGCCGGC 59.610 47.619 19.07 19.07 0.00 6.13
5084 7253 1.389784 GCATGACAAAATTTTCGCCGG 59.610 47.619 0.00 0.00 0.00 6.13
5085 7254 1.057566 CGCATGACAAAATTTTCGCCG 59.942 47.619 0.00 0.00 0.00 6.46
5086 7255 2.323959 TCGCATGACAAAATTTTCGCC 58.676 42.857 0.00 0.00 0.00 5.54
5087 7256 3.710362 GTTCGCATGACAAAATTTTCGC 58.290 40.909 0.00 0.00 0.00 4.70
5088 7257 3.661728 TCGTTCGCATGACAAAATTTTCG 59.338 39.130 0.00 0.84 0.00 3.46
5089 7258 4.909305 TCTCGTTCGCATGACAAAATTTTC 59.091 37.500 0.00 0.00 0.00 2.29
5090 7259 4.854399 TCTCGTTCGCATGACAAAATTTT 58.146 34.783 0.00 0.00 0.00 1.82
5091 7260 4.481930 TCTCGTTCGCATGACAAAATTT 57.518 36.364 0.00 0.00 0.00 1.82
5092 7261 4.481930 TTCTCGTTCGCATGACAAAATT 57.518 36.364 0.00 0.00 0.00 1.82
5093 7262 4.481930 TTTCTCGTTCGCATGACAAAAT 57.518 36.364 0.00 0.00 0.00 1.82
5094 7263 3.953874 TTTCTCGTTCGCATGACAAAA 57.046 38.095 0.00 0.00 0.00 2.44
5095 7264 3.953874 TTTTCTCGTTCGCATGACAAA 57.046 38.095 0.00 0.00 0.00 2.83
5096 7265 3.745975 AGATTTTCTCGTTCGCATGACAA 59.254 39.130 0.00 0.00 0.00 3.18
5097 7266 3.325870 AGATTTTCTCGTTCGCATGACA 58.674 40.909 0.00 0.00 0.00 3.58
5098 7267 3.242123 GGAGATTTTCTCGTTCGCATGAC 60.242 47.826 0.00 0.00 44.28 3.06
5099 7268 2.930040 GGAGATTTTCTCGTTCGCATGA 59.070 45.455 0.00 0.00 44.28 3.07
5100 7269 2.672874 TGGAGATTTTCTCGTTCGCATG 59.327 45.455 0.00 0.00 44.28 4.06
5101 7270 2.932614 CTGGAGATTTTCTCGTTCGCAT 59.067 45.455 0.00 0.00 44.28 4.73
5102 7271 2.337583 CTGGAGATTTTCTCGTTCGCA 58.662 47.619 0.00 0.00 44.28 5.10
5103 7272 1.061276 GCTGGAGATTTTCTCGTTCGC 59.939 52.381 0.00 0.00 44.28 4.70
5104 7273 1.661112 GGCTGGAGATTTTCTCGTTCG 59.339 52.381 0.00 0.00 44.28 3.95
5105 7274 1.661112 CGGCTGGAGATTTTCTCGTTC 59.339 52.381 0.00 0.00 44.28 3.95
5106 7275 1.002087 ACGGCTGGAGATTTTCTCGTT 59.998 47.619 0.00 0.00 44.28 3.85
5107 7276 0.608640 ACGGCTGGAGATTTTCTCGT 59.391 50.000 0.00 0.00 44.28 4.18
5108 7277 1.726853 AACGGCTGGAGATTTTCTCG 58.273 50.000 0.00 0.00 44.28 4.04
5109 7278 2.420372 GGAAACGGCTGGAGATTTTCTC 59.580 50.000 0.00 0.00 42.66 2.87
5110 7279 2.040412 AGGAAACGGCTGGAGATTTTCT 59.960 45.455 0.00 0.00 0.00 2.52
5111 7280 2.420372 GAGGAAACGGCTGGAGATTTTC 59.580 50.000 0.00 0.00 0.00 2.29
5112 7281 2.437413 GAGGAAACGGCTGGAGATTTT 58.563 47.619 0.00 0.00 0.00 1.82
5113 7282 1.340114 GGAGGAAACGGCTGGAGATTT 60.340 52.381 0.00 0.00 0.00 2.17
5114 7283 0.253327 GGAGGAAACGGCTGGAGATT 59.747 55.000 0.00 0.00 0.00 2.40
5115 7284 1.627297 GGGAGGAAACGGCTGGAGAT 61.627 60.000 0.00 0.00 0.00 2.75
5116 7285 2.291043 GGGAGGAAACGGCTGGAGA 61.291 63.158 0.00 0.00 0.00 3.71
5117 7286 2.269241 GGGAGGAAACGGCTGGAG 59.731 66.667 0.00 0.00 0.00 3.86
5118 7287 3.327404 GGGGAGGAAACGGCTGGA 61.327 66.667 0.00 0.00 0.00 3.86
5119 7288 3.204467 TTGGGGAGGAAACGGCTGG 62.204 63.158 0.00 0.00 0.00 4.85
5120 7289 1.675641 CTTGGGGAGGAAACGGCTG 60.676 63.158 0.00 0.00 0.00 4.85
5121 7290 2.757077 CTTGGGGAGGAAACGGCT 59.243 61.111 0.00 0.00 0.00 5.52
5122 7291 3.062466 GCTTGGGGAGGAAACGGC 61.062 66.667 0.00 0.00 0.00 5.68
5123 7292 2.746277 CGCTTGGGGAGGAAACGG 60.746 66.667 0.00 0.00 0.00 4.44
5124 7293 1.741770 CTCGCTTGGGGAGGAAACG 60.742 63.158 4.07 0.00 38.66 3.60
5125 7294 4.303257 CTCGCTTGGGGAGGAAAC 57.697 61.111 4.07 0.00 38.66 2.78
5130 7299 3.672295 GACAGCCTCGCTTGGGGAG 62.672 68.421 4.89 4.89 41.39 4.30
5131 7300 3.706373 GACAGCCTCGCTTGGGGA 61.706 66.667 0.00 0.00 36.40 4.81
5195 7364 2.359107 TGCTGCTGGAAGGCGAAG 60.359 61.111 0.00 0.00 34.52 3.79
5196 7365 2.669569 GTGCTGCTGGAAGGCGAA 60.670 61.111 0.00 0.00 34.52 4.70
5199 7368 3.426568 GACGTGCTGCTGGAAGGC 61.427 66.667 0.00 0.00 0.00 4.35
5200 7369 2.743928 GGACGTGCTGCTGGAAGG 60.744 66.667 0.00 0.00 0.00 3.46
5201 7370 1.376424 ATGGACGTGCTGCTGGAAG 60.376 57.895 8.99 0.00 0.00 3.46
5202 7371 1.672030 CATGGACGTGCTGCTGGAA 60.672 57.895 8.99 0.00 0.00 3.53
5203 7372 2.046988 CATGGACGTGCTGCTGGA 60.047 61.111 8.99 0.00 0.00 3.86
5204 7373 3.807538 GCATGGACGTGCTGCTGG 61.808 66.667 18.94 0.00 41.82 4.85
5211 7380 3.657448 TACGGGCAGCATGGACGTG 62.657 63.158 0.00 0.00 38.34 4.49
5212 7381 3.371097 CTACGGGCAGCATGGACGT 62.371 63.158 0.00 0.00 41.10 4.34
5213 7382 2.586079 CTACGGGCAGCATGGACG 60.586 66.667 0.00 0.00 35.86 4.79
5214 7383 1.521681 GACTACGGGCAGCATGGAC 60.522 63.158 0.00 0.00 35.86 4.02
5215 7384 2.731571 GGACTACGGGCAGCATGGA 61.732 63.158 0.00 0.00 35.86 3.41
5216 7385 2.203070 GGACTACGGGCAGCATGG 60.203 66.667 0.00 0.00 35.86 3.66
5217 7386 2.203070 GGGACTACGGGCAGCATG 60.203 66.667 0.00 0.00 40.87 4.06
5218 7387 3.849951 CGGGACTACGGGCAGCAT 61.850 66.667 0.00 0.00 0.00 3.79
5221 7390 4.208686 GAGCGGGACTACGGGCAG 62.209 72.222 0.00 0.00 0.00 4.85
5224 7393 3.217743 GAGGAGCGGGACTACGGG 61.218 72.222 0.00 0.00 32.63 5.28
5225 7394 3.584052 CGAGGAGCGGGACTACGG 61.584 72.222 0.00 0.00 32.63 4.02
5226 7395 4.253257 GCGAGGAGCGGGACTACG 62.253 72.222 0.00 0.00 41.29 3.51
5269 7438 2.703798 CCTTCCTGCATGCCAACGG 61.704 63.158 16.68 10.47 0.00 4.44
5270 7439 2.879907 CCTTCCTGCATGCCAACG 59.120 61.111 16.68 0.63 0.00 4.10
5271 7440 2.575461 GCCTTCCTGCATGCCAAC 59.425 61.111 16.68 0.00 0.00 3.77
5272 7441 2.681064 GGCCTTCCTGCATGCCAA 60.681 61.111 16.68 4.42 43.46 4.52
5275 7444 3.512516 GACGGCCTTCCTGCATGC 61.513 66.667 11.82 11.82 0.00 4.06
5276 7445 3.197790 CGACGGCCTTCCTGCATG 61.198 66.667 3.22 0.00 0.00 4.06
5277 7446 3.665675 GACGACGGCCTTCCTGCAT 62.666 63.158 3.22 0.00 0.00 3.96
5278 7447 4.373116 GACGACGGCCTTCCTGCA 62.373 66.667 3.22 0.00 0.00 4.41
5282 7451 4.814294 ATGCGACGACGGCCTTCC 62.814 66.667 9.67 0.00 40.15 3.46
5283 7452 3.255379 GATGCGACGACGGCCTTC 61.255 66.667 9.67 0.00 40.15 3.46
5313 7482 4.493747 GAAGGTCGTCCTCGGCGG 62.494 72.222 7.21 0.00 44.35 6.13
5314 7483 3.398353 GAGAAGGTCGTCCTCGGCG 62.398 68.421 0.00 0.00 44.35 6.46
5315 7484 2.490685 GAGAAGGTCGTCCTCGGC 59.509 66.667 0.46 0.00 44.35 5.54
5316 7485 2.792599 CGAGAAGGTCGTCCTCGG 59.207 66.667 0.46 0.00 44.35 4.63
5324 7493 2.435059 GCAGGGCACGAGAAGGTC 60.435 66.667 0.00 0.00 0.00 3.85
5325 7494 3.241530 TGCAGGGCACGAGAAGGT 61.242 61.111 0.00 0.00 31.71 3.50
5357 7526 4.489771 GGACGGGGACATGGCCAG 62.490 72.222 22.13 15.60 33.23 4.85
5371 7540 1.664306 GGGATATGACGACGGGGAC 59.336 63.158 0.00 0.00 0.00 4.46
5372 7541 1.532316 GGGGATATGACGACGGGGA 60.532 63.158 0.00 0.00 0.00 4.81
5373 7542 2.927580 CGGGGATATGACGACGGGG 61.928 68.421 0.00 0.00 0.00 5.73
5374 7543 2.138656 GACGGGGATATGACGACGGG 62.139 65.000 0.00 0.00 0.00 5.28
5375 7544 1.285023 GACGGGGATATGACGACGG 59.715 63.158 0.00 0.00 0.00 4.79
5376 7545 1.170919 AGGACGGGGATATGACGACG 61.171 60.000 0.00 0.00 0.00 5.12
5377 7546 0.597072 GAGGACGGGGATATGACGAC 59.403 60.000 0.00 0.00 0.00 4.34
5378 7547 0.887836 CGAGGACGGGGATATGACGA 60.888 60.000 0.00 0.00 35.72 4.20
5379 7548 1.170919 ACGAGGACGGGGATATGACG 61.171 60.000 0.00 0.00 44.46 4.35
5380 7549 0.597072 GACGAGGACGGGGATATGAC 59.403 60.000 0.00 0.00 44.46 3.06
5381 7550 0.887836 CGACGAGGACGGGGATATGA 60.888 60.000 0.00 0.00 44.46 2.15
5382 7551 1.170919 ACGACGAGGACGGGGATATG 61.171 60.000 0.00 0.00 44.46 1.78
5383 7552 0.888285 GACGACGAGGACGGGGATAT 60.888 60.000 0.00 0.00 44.46 1.63
5384 7553 1.524621 GACGACGAGGACGGGGATA 60.525 63.158 0.00 0.00 44.46 2.59
5385 7554 2.827642 GACGACGAGGACGGGGAT 60.828 66.667 0.00 0.00 44.46 3.85
5388 7557 3.338126 CTTGGACGACGAGGACGGG 62.338 68.421 0.00 0.00 44.46 5.28
5389 7558 2.178521 CTTGGACGACGAGGACGG 59.821 66.667 0.00 0.00 44.46 4.79
5394 7563 4.796231 CCGGCCTTGGACGACGAG 62.796 72.222 17.46 0.00 0.00 4.18
5400 7569 3.959991 GAGAGCACCGGCCTTGGAC 62.960 68.421 0.00 0.00 42.56 4.02
5401 7570 3.706373 GAGAGCACCGGCCTTGGA 61.706 66.667 0.00 0.00 42.56 3.53
5402 7571 4.785453 GGAGAGCACCGGCCTTGG 62.785 72.222 0.00 0.00 42.56 3.61
5403 7572 3.551496 TTGGAGAGCACCGGCCTTG 62.551 63.158 0.00 0.00 42.56 3.61
5404 7573 3.249189 TTGGAGAGCACCGGCCTT 61.249 61.111 0.00 0.00 42.56 4.35
5405 7574 4.021925 GTTGGAGAGCACCGGCCT 62.022 66.667 0.00 0.00 42.56 5.19
5406 7575 3.959991 GAGTTGGAGAGCACCGGCC 62.960 68.421 0.00 0.00 42.56 6.13
5407 7576 2.435059 GAGTTGGAGAGCACCGGC 60.435 66.667 0.00 0.00 41.61 6.13
5408 7577 2.266055 GGAGTTGGAGAGCACCGG 59.734 66.667 0.00 0.00 0.00 5.28
5409 7578 2.125912 CGGAGTTGGAGAGCACCG 60.126 66.667 0.00 0.00 34.77 4.94
5410 7579 1.374758 CACGGAGTTGGAGAGCACC 60.375 63.158 0.00 0.00 41.61 5.01
5411 7580 0.946221 CACACGGAGTTGGAGAGCAC 60.946 60.000 0.00 0.00 41.61 4.40
5412 7581 1.367471 CACACGGAGTTGGAGAGCA 59.633 57.895 0.00 0.00 41.61 4.26
5413 7582 1.374758 CCACACGGAGTTGGAGAGC 60.375 63.158 0.00 0.00 41.61 4.09
5414 7583 1.185618 TCCCACACGGAGTTGGAGAG 61.186 60.000 0.00 0.00 41.61 3.20
5415 7584 1.152419 TCCCACACGGAGTTGGAGA 60.152 57.895 0.00 0.00 41.61 3.71
5416 7585 3.466881 TCCCACACGGAGTTGGAG 58.533 61.111 0.00 0.00 41.61 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.