Multiple sequence alignment - TraesCS3B01G110300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G110300 chr3B 100.000 2545 0 0 1 2545 76120599 76123143 0.000000e+00 4700.0
1 TraesCS3B01G110300 chr3B 87.745 612 58 10 976 1571 39346274 39346884 0.000000e+00 699.0
2 TraesCS3B01G110300 chr3B 79.823 451 68 19 1592 2033 4489446 4489010 8.840000e-80 307.0
3 TraesCS3B01G110300 chr3B 78.966 290 50 5 234 516 31554842 31555127 1.200000e-43 187.0
4 TraesCS3B01G110300 chr3B 78.641 206 39 4 2340 2545 39347637 39347837 5.710000e-27 132.0
5 TraesCS3B01G110300 chr3A 93.003 1572 86 10 976 2545 60504043 60502494 0.000000e+00 2272.0
6 TraesCS3B01G110300 chr3A 91.484 364 21 4 583 944 60504508 60504153 2.270000e-135 492.0
7 TraesCS3B01G110300 chr3D 94.962 933 42 4 964 1893 48361328 48360398 0.000000e+00 1458.0
8 TraesCS3B01G110300 chr3D 91.871 529 35 4 2021 2545 48355716 48355192 0.000000e+00 732.0
9 TraesCS3B01G110300 chr3D 93.095 420 15 6 536 944 48361807 48361391 1.010000e-168 603.0
10 TraesCS3B01G110300 chr3D 85.022 227 26 7 1763 1986 47703048 47703269 9.160000e-55 224.0
11 TraesCS3B01G110300 chr3D 80.969 289 44 7 234 515 9455233 9454949 4.260000e-53 219.0
12 TraesCS3B01G110300 chr3D 86.667 135 6 3 1885 2019 48360168 48360046 3.410000e-29 139.0
13 TraesCS3B01G110300 chr6B 94.043 235 7 3 1 234 690174526 690174298 1.450000e-92 350.0
14 TraesCS3B01G110300 chr6B 91.915 235 11 3 1 234 80081995 80082222 3.160000e-84 322.0
15 TraesCS3B01G110300 chr5D 92.469 239 13 2 1 234 561147442 561147204 1.130000e-88 337.0
16 TraesCS3B01G110300 chr5D 78.696 230 39 7 1767 1992 24970919 24971142 7.340000e-31 145.0
17 TraesCS3B01G110300 chr5D 97.059 34 1 0 1713 1746 432161394 432161427 9.830000e-05 58.4
18 TraesCS3B01G110300 chr2B 92.827 237 8 4 1 235 780167012 780166783 4.060000e-88 335.0
19 TraesCS3B01G110300 chr6A 92.083 240 13 2 1 234 54724287 54724526 1.460000e-87 333.0
20 TraesCS3B01G110300 chr6D 92.405 237 9 3 1 234 470033603 470033373 1.890000e-86 329.0
21 TraesCS3B01G110300 chr5B 92.340 235 11 4 2 234 20344277 20344048 6.790000e-86 327.0
22 TraesCS3B01G110300 chr5B 84.400 250 38 1 2035 2284 625112940 625112692 7.030000e-61 244.0
23 TraesCS3B01G110300 chr5B 84.400 250 38 1 2035 2284 628692493 628692245 7.030000e-61 244.0
24 TraesCS3B01G110300 chr5B 82.500 280 37 9 234 506 679575858 679575584 4.230000e-58 235.0
25 TraesCS3B01G110300 chr5B 83.267 251 33 5 2036 2284 629893697 629893454 3.300000e-54 222.0
26 TraesCS3B01G110300 chr5B 79.514 288 53 3 234 515 102084507 102084794 1.540000e-47 200.0
27 TraesCS3B01G110300 chr2D 92.340 235 11 2 1 234 18998759 18998987 6.790000e-86 327.0
28 TraesCS3B01G110300 chr2D 80.529 416 72 7 1634 2046 641122877 641122468 6.840000e-81 311.0
29 TraesCS3B01G110300 chrUn 91.597 238 11 4 2 236 22525587 22525818 1.140000e-83 320.0
30 TraesCS3B01G110300 chr4A 84.694 294 39 3 235 522 323044484 323044191 3.200000e-74 289.0
31 TraesCS3B01G110300 chr4A 80.952 294 46 7 234 519 589814457 589814166 9.160000e-55 224.0
32 TraesCS3B01G110300 chr4A 100.000 38 0 0 1900 1937 657065568 657065605 1.260000e-08 71.3
33 TraesCS3B01G110300 chr7A 79.506 405 63 13 1590 1992 2008134 2008520 1.160000e-68 270.0
34 TraesCS3B01G110300 chr7A 79.310 290 50 7 234 516 690775757 690776043 7.180000e-46 195.0
35 TraesCS3B01G110300 chr7D 78.947 418 71 13 1590 2004 3891413 3891010 4.170000e-68 268.0
36 TraesCS3B01G110300 chr7B 82.474 291 42 6 232 515 747377862 747378150 1.960000e-61 246.0
37 TraesCS3B01G110300 chr7B 80.277 289 50 4 233 515 482171724 482171437 7.130000e-51 211.0
38 TraesCS3B01G110300 chr5A 100.000 29 0 0 1713 1741 547207409 547207437 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G110300 chr3B 76120599 76123143 2544 False 4700.000000 4700 100.000000 1 2545 1 chr3B.!!$F2 2544
1 TraesCS3B01G110300 chr3B 39346274 39347837 1563 False 415.500000 699 83.193000 976 2545 2 chr3B.!!$F3 1569
2 TraesCS3B01G110300 chr3A 60502494 60504508 2014 True 1382.000000 2272 92.243500 583 2545 2 chr3A.!!$R1 1962
3 TraesCS3B01G110300 chr3D 48360046 48361807 1761 True 733.333333 1458 91.574667 536 2019 3 chr3D.!!$R3 1483
4 TraesCS3B01G110300 chr3D 48355192 48355716 524 True 732.000000 732 91.871000 2021 2545 1 chr3D.!!$R2 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 271 0.035820 GGACCGGTGTATGCCTCAAA 60.036 55.0 14.63 0.0 0.0 2.69 F
415 416 0.036732 TGCCGAGAAGGTTGCTTCAT 59.963 50.0 0.00 0.0 43.7 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1449 1.559368 TTTGGTGCTTGATCCCCATG 58.441 50.000 0.0 0.0 0.00 3.66 R
2317 2944 2.025981 TGTGGGCAACATATCTGAAGCT 60.026 45.455 0.0 0.0 32.36 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.959734 AAATCGTAAAATTTTCTTTAGTCCCG 57.040 30.769 6.72 0.00 0.00 5.14
48 49 6.484818 TCGTAAAATTTTCTTTAGTCCCGG 57.515 37.500 6.72 0.00 0.00 5.73
49 50 5.997129 TCGTAAAATTTTCTTTAGTCCCGGT 59.003 36.000 6.72 0.00 0.00 5.28
50 51 6.486320 TCGTAAAATTTTCTTTAGTCCCGGTT 59.514 34.615 6.72 0.00 0.00 4.44
51 52 6.579666 CGTAAAATTTTCTTTAGTCCCGGTTG 59.420 38.462 6.72 0.00 0.00 3.77
52 53 5.462530 AAATTTTCTTTAGTCCCGGTTGG 57.537 39.130 0.00 0.00 0.00 3.77
53 54 3.581265 TTTTCTTTAGTCCCGGTTGGT 57.419 42.857 0.00 0.00 34.77 3.67
54 55 2.554370 TTCTTTAGTCCCGGTTGGTG 57.446 50.000 0.00 0.00 34.77 4.17
55 56 1.426751 TCTTTAGTCCCGGTTGGTGT 58.573 50.000 0.00 0.00 34.77 4.16
56 57 1.770061 TCTTTAGTCCCGGTTGGTGTT 59.230 47.619 0.00 0.00 34.77 3.32
57 58 2.971330 TCTTTAGTCCCGGTTGGTGTTA 59.029 45.455 0.00 0.00 34.77 2.41
58 59 2.837532 TTAGTCCCGGTTGGTGTTAC 57.162 50.000 0.00 0.00 34.77 2.50
59 60 0.975887 TAGTCCCGGTTGGTGTTACC 59.024 55.000 0.00 0.00 39.22 2.85
69 70 2.736197 GGTGTTACCAACCCCAACC 58.264 57.895 0.00 0.00 38.42 3.77
70 71 1.174078 GGTGTTACCAACCCCAACCG 61.174 60.000 0.00 0.00 38.42 4.44
71 72 1.150992 TGTTACCAACCCCAACCGG 59.849 57.895 0.00 0.00 0.00 5.28
82 83 3.243128 CCAACCGGGACTAAAGGTG 57.757 57.895 6.32 0.00 40.01 4.00
83 84 0.322187 CCAACCGGGACTAAAGGTGG 60.322 60.000 6.32 0.00 40.01 4.61
84 85 0.688487 CAACCGGGACTAAAGGTGGA 59.312 55.000 6.32 0.00 38.44 4.02
85 86 0.981943 AACCGGGACTAAAGGTGGAG 59.018 55.000 6.32 0.00 38.44 3.86
86 87 1.221021 CCGGGACTAAAGGTGGAGC 59.779 63.158 0.00 0.00 0.00 4.70
87 88 1.265454 CCGGGACTAAAGGTGGAGCT 61.265 60.000 0.00 0.00 0.00 4.09
88 89 0.175989 CGGGACTAAAGGTGGAGCTC 59.824 60.000 4.71 4.71 0.00 4.09
89 90 0.542333 GGGACTAAAGGTGGAGCTCC 59.458 60.000 26.78 26.78 0.00 4.70
90 91 1.276622 GGACTAAAGGTGGAGCTCCA 58.723 55.000 32.00 32.00 45.30 3.86
115 116 4.091939 GCGGCCTTTAGTCCCGGT 62.092 66.667 0.00 0.00 42.17 5.28
116 117 2.666812 CGGCCTTTAGTCCCGGTT 59.333 61.111 0.00 0.00 38.42 4.44
117 118 1.449070 CGGCCTTTAGTCCCGGTTC 60.449 63.158 0.00 0.00 38.42 3.62
118 119 1.449070 GGCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
119 120 1.294459 GCCTTTAGTCCCGGTTCGT 59.706 57.895 0.00 0.00 0.00 3.85
120 121 0.321034 GCCTTTAGTCCCGGTTCGTT 60.321 55.000 0.00 0.00 0.00 3.85
121 122 1.879372 GCCTTTAGTCCCGGTTCGTTT 60.879 52.381 0.00 0.00 0.00 3.60
122 123 2.612721 GCCTTTAGTCCCGGTTCGTTTA 60.613 50.000 0.00 0.00 0.00 2.01
123 124 3.663025 CCTTTAGTCCCGGTTCGTTTAA 58.337 45.455 0.00 0.00 0.00 1.52
124 125 3.681417 CCTTTAGTCCCGGTTCGTTTAAG 59.319 47.826 0.00 0.00 0.00 1.85
125 126 4.559153 CTTTAGTCCCGGTTCGTTTAAGA 58.441 43.478 0.00 0.00 0.00 2.10
126 127 4.599047 TTAGTCCCGGTTCGTTTAAGAA 57.401 40.909 0.00 0.00 0.00 2.52
134 135 2.759191 GTTCGTTTAAGAACCGGGACT 58.241 47.619 6.32 0.73 43.33 3.85
135 136 3.913089 GTTCGTTTAAGAACCGGGACTA 58.087 45.455 6.32 0.00 43.33 2.59
136 137 4.306600 GTTCGTTTAAGAACCGGGACTAA 58.693 43.478 6.32 0.00 43.33 2.24
137 138 4.599047 TCGTTTAAGAACCGGGACTAAA 57.401 40.909 6.32 1.20 31.93 1.85
138 139 4.559153 TCGTTTAAGAACCGGGACTAAAG 58.441 43.478 6.32 0.00 31.93 1.85
139 140 3.681417 CGTTTAAGAACCGGGACTAAAGG 59.319 47.826 6.32 6.20 31.93 3.11
140 141 3.986996 TTAAGAACCGGGACTAAAGGG 57.013 47.619 6.32 0.00 0.00 3.95
141 142 0.989602 AAGAACCGGGACTAAAGGGG 59.010 55.000 6.32 0.00 0.00 4.79
142 143 0.117742 AGAACCGGGACTAAAGGGGA 59.882 55.000 6.32 0.00 0.00 4.81
143 144 0.540454 GAACCGGGACTAAAGGGGAG 59.460 60.000 6.32 0.00 0.00 4.30
144 145 0.117742 AACCGGGACTAAAGGGGAGA 59.882 55.000 6.32 0.00 0.00 3.71
145 146 0.325390 ACCGGGACTAAAGGGGAGAG 60.325 60.000 6.32 0.00 0.00 3.20
146 147 1.049289 CCGGGACTAAAGGGGAGAGG 61.049 65.000 0.00 0.00 0.00 3.69
147 148 1.687297 CGGGACTAAAGGGGAGAGGC 61.687 65.000 0.00 0.00 0.00 4.70
148 149 0.620700 GGGACTAAAGGGGAGAGGCA 60.621 60.000 0.00 0.00 0.00 4.75
149 150 1.512735 GGACTAAAGGGGAGAGGCAT 58.487 55.000 0.00 0.00 0.00 4.40
150 151 1.847088 GGACTAAAGGGGAGAGGCATT 59.153 52.381 0.00 0.00 0.00 3.56
151 152 3.046374 GGACTAAAGGGGAGAGGCATTA 58.954 50.000 0.00 0.00 0.00 1.90
152 153 3.071747 GGACTAAAGGGGAGAGGCATTAG 59.928 52.174 0.00 0.00 0.00 1.73
153 154 3.712218 GACTAAAGGGGAGAGGCATTAGT 59.288 47.826 0.00 0.00 36.57 2.24
154 155 4.892198 ACTAAAGGGGAGAGGCATTAGTA 58.108 43.478 0.00 0.00 33.23 1.82
155 156 5.286221 ACTAAAGGGGAGAGGCATTAGTAA 58.714 41.667 0.00 0.00 33.23 2.24
156 157 4.505324 AAAGGGGAGAGGCATTAGTAAC 57.495 45.455 0.00 0.00 0.00 2.50
157 158 2.040178 AGGGGAGAGGCATTAGTAACG 58.960 52.381 0.00 0.00 0.00 3.18
158 159 2.037144 GGGGAGAGGCATTAGTAACGA 58.963 52.381 0.00 0.00 0.00 3.85
159 160 2.223994 GGGGAGAGGCATTAGTAACGAC 60.224 54.545 0.00 0.00 0.00 4.34
160 161 2.223994 GGGAGAGGCATTAGTAACGACC 60.224 54.545 0.00 0.00 0.00 4.79
161 162 2.223994 GGAGAGGCATTAGTAACGACCC 60.224 54.545 0.00 0.00 0.00 4.46
162 163 2.694109 GAGAGGCATTAGTAACGACCCT 59.306 50.000 0.00 0.00 0.00 4.34
163 164 3.105283 AGAGGCATTAGTAACGACCCTT 58.895 45.455 0.00 0.00 0.00 3.95
164 165 3.518303 AGAGGCATTAGTAACGACCCTTT 59.482 43.478 0.00 0.00 0.00 3.11
165 166 4.713321 AGAGGCATTAGTAACGACCCTTTA 59.287 41.667 0.00 0.00 0.00 1.85
166 167 5.019785 AGGCATTAGTAACGACCCTTTAG 57.980 43.478 0.00 0.00 0.00 1.85
167 168 4.468868 AGGCATTAGTAACGACCCTTTAGT 59.531 41.667 0.00 0.00 0.00 2.24
168 169 4.807834 GGCATTAGTAACGACCCTTTAGTC 59.192 45.833 0.00 0.00 0.00 2.59
169 170 4.807834 GCATTAGTAACGACCCTTTAGTCC 59.192 45.833 0.00 0.00 32.91 3.85
170 171 5.354767 CATTAGTAACGACCCTTTAGTCCC 58.645 45.833 0.00 0.00 32.91 4.46
171 172 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
172 173 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
173 174 0.833409 AACGACCCTTTAGTCCCGGT 60.833 55.000 0.00 0.00 32.91 5.28
174 175 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
175 176 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
176 177 0.978907 GACCCTTTAGTCCCGGTTCA 59.021 55.000 0.00 0.00 0.00 3.18
177 178 1.348696 GACCCTTTAGTCCCGGTTCAA 59.651 52.381 0.00 0.00 0.00 2.69
178 179 1.776063 ACCCTTTAGTCCCGGTTCAAA 59.224 47.619 0.00 0.00 0.00 2.69
179 180 2.175284 ACCCTTTAGTCCCGGTTCAAAA 59.825 45.455 0.00 0.00 0.00 2.44
180 181 3.224269 CCCTTTAGTCCCGGTTCAAAAA 58.776 45.455 0.00 0.00 0.00 1.94
181 182 3.005050 CCCTTTAGTCCCGGTTCAAAAAC 59.995 47.826 0.00 0.00 34.46 2.43
192 193 4.859304 GGTTCAAAAACCGGGACTAAAT 57.141 40.909 6.32 0.00 45.33 1.40
193 194 4.552355 GGTTCAAAAACCGGGACTAAATG 58.448 43.478 6.32 0.00 45.33 2.32
194 195 4.552355 GTTCAAAAACCGGGACTAAATGG 58.448 43.478 6.32 0.00 0.00 3.16
195 196 2.559231 TCAAAAACCGGGACTAAATGGC 59.441 45.455 6.32 0.00 0.00 4.40
196 197 1.552578 AAAACCGGGACTAAATGGCC 58.447 50.000 6.32 0.00 45.48 5.36
197 198 0.702316 AAACCGGGACTAAATGGCCT 59.298 50.000 6.32 0.00 45.52 5.19
198 199 0.702316 AACCGGGACTAAATGGCCTT 59.298 50.000 6.32 0.00 45.52 4.35
199 200 1.587066 ACCGGGACTAAATGGCCTTA 58.413 50.000 6.32 0.00 45.52 2.69
200 201 1.211212 ACCGGGACTAAATGGCCTTAC 59.789 52.381 6.32 0.00 45.52 2.34
201 202 1.476291 CCGGGACTAAATGGCCTTACC 60.476 57.143 3.32 0.00 45.52 2.85
210 211 2.045634 GGCCTTACCAACCGGGAC 60.046 66.667 6.32 0.00 41.15 4.46
211 212 2.751688 GCCTTACCAACCGGGACA 59.248 61.111 6.32 0.00 41.15 4.02
212 213 1.073548 GCCTTACCAACCGGGACAA 59.926 57.895 6.32 0.00 41.15 3.18
213 214 0.537828 GCCTTACCAACCGGGACAAA 60.538 55.000 6.32 0.00 41.15 2.83
214 215 1.984066 CCTTACCAACCGGGACAAAA 58.016 50.000 6.32 0.00 41.15 2.44
215 216 1.883926 CCTTACCAACCGGGACAAAAG 59.116 52.381 6.32 3.70 41.15 2.27
216 217 2.578786 CTTACCAACCGGGACAAAAGT 58.421 47.619 6.32 0.00 41.15 2.66
217 218 2.259266 TACCAACCGGGACAAAAGTC 57.741 50.000 6.32 0.00 41.15 3.01
218 219 0.466739 ACCAACCGGGACAAAAGTCC 60.467 55.000 6.32 6.11 42.62 3.85
232 233 7.849160 GGACAAAAGTCCCTTTATCTACTAGT 58.151 38.462 0.00 0.00 37.54 2.57
233 234 7.764901 GGACAAAAGTCCCTTTATCTACTAGTG 59.235 40.741 5.39 0.00 37.54 2.74
234 235 7.621796 ACAAAAGTCCCTTTATCTACTAGTGG 58.378 38.462 5.39 1.87 31.99 4.00
235 236 5.873146 AAGTCCCTTTATCTACTAGTGGC 57.127 43.478 5.39 0.00 0.00 5.01
236 237 4.224762 AGTCCCTTTATCTACTAGTGGCC 58.775 47.826 5.39 0.00 0.00 5.36
237 238 4.078513 AGTCCCTTTATCTACTAGTGGCCT 60.079 45.833 5.39 0.00 0.00 5.19
238 239 4.281435 GTCCCTTTATCTACTAGTGGCCTC 59.719 50.000 5.39 0.00 0.00 4.70
239 240 4.170251 TCCCTTTATCTACTAGTGGCCTCT 59.830 45.833 12.79 12.79 0.00 3.69
240 241 4.282195 CCCTTTATCTACTAGTGGCCTCTG 59.718 50.000 17.65 9.69 0.00 3.35
241 242 5.141182 CCTTTATCTACTAGTGGCCTCTGA 58.859 45.833 17.65 6.32 0.00 3.27
242 243 5.242838 CCTTTATCTACTAGTGGCCTCTGAG 59.757 48.000 17.65 11.35 0.00 3.35
243 244 5.648330 TTATCTACTAGTGGCCTCTGAGA 57.352 43.478 17.65 15.79 0.00 3.27
244 245 3.569194 TCTACTAGTGGCCTCTGAGAG 57.431 52.381 17.65 9.36 0.00 3.20
245 246 2.847449 TCTACTAGTGGCCTCTGAGAGT 59.153 50.000 17.65 14.55 0.00 3.24
246 247 1.846007 ACTAGTGGCCTCTGAGAGTG 58.154 55.000 17.65 1.26 0.00 3.51
247 248 0.459489 CTAGTGGCCTCTGAGAGTGC 59.541 60.000 17.65 11.05 0.00 4.40
248 249 1.315981 TAGTGGCCTCTGAGAGTGCG 61.316 60.000 17.65 0.00 30.49 5.34
249 250 4.074526 TGGCCTCTGAGAGTGCGC 62.075 66.667 8.88 0.00 30.49 6.09
250 251 4.828925 GGCCTCTGAGAGTGCGCC 62.829 72.222 11.55 11.55 30.49 6.53
252 253 4.504916 CCTCTGAGAGTGCGCCGG 62.505 72.222 4.18 0.00 0.00 6.13
253 254 3.443925 CTCTGAGAGTGCGCCGGA 61.444 66.667 5.05 0.00 0.00 5.14
254 255 3.691744 CTCTGAGAGTGCGCCGGAC 62.692 68.421 5.05 0.00 0.00 4.79
255 256 4.803426 CTGAGAGTGCGCCGGACC 62.803 72.222 5.05 0.00 0.00 4.46
266 267 3.467226 CCGGACCGGTGTATGCCT 61.467 66.667 25.54 0.00 42.73 4.75
267 268 2.106332 CGGACCGGTGTATGCCTC 59.894 66.667 14.63 0.00 0.00 4.70
268 269 2.717044 CGGACCGGTGTATGCCTCA 61.717 63.158 14.63 0.00 0.00 3.86
269 270 1.600107 GGACCGGTGTATGCCTCAA 59.400 57.895 14.63 0.00 0.00 3.02
270 271 0.035820 GGACCGGTGTATGCCTCAAA 60.036 55.000 14.63 0.00 0.00 2.69
271 272 1.084289 GACCGGTGTATGCCTCAAAC 58.916 55.000 14.63 0.00 0.00 2.93
272 273 0.322187 ACCGGTGTATGCCTCAAACC 60.322 55.000 6.12 0.00 0.00 3.27
273 274 1.029947 CCGGTGTATGCCTCAAACCC 61.030 60.000 0.00 0.00 0.00 4.11
274 275 1.366111 CGGTGTATGCCTCAAACCCG 61.366 60.000 0.00 0.00 0.00 5.28
275 276 1.029947 GGTGTATGCCTCAAACCCGG 61.030 60.000 0.00 0.00 0.00 5.73
276 277 1.377987 TGTATGCCTCAAACCCGGC 60.378 57.895 0.00 0.00 46.46 6.13
280 281 2.573340 GCCTCAAACCCGGCATTG 59.427 61.111 10.32 10.32 45.59 2.82
281 282 2.275380 GCCTCAAACCCGGCATTGT 61.275 57.895 14.71 0.00 45.59 2.71
282 283 1.586028 CCTCAAACCCGGCATTGTG 59.414 57.895 14.71 12.64 0.00 3.33
283 284 1.586028 CTCAAACCCGGCATTGTGG 59.414 57.895 14.71 7.62 0.00 4.17
284 285 2.048316 CAAACCCGGCATTGTGGC 60.048 61.111 0.00 0.00 39.85 5.01
285 286 2.203625 AAACCCGGCATTGTGGCT 60.204 55.556 0.00 0.00 41.25 4.75
286 287 1.836604 AAACCCGGCATTGTGGCTT 60.837 52.632 0.00 0.00 41.25 4.35
287 288 2.098426 AAACCCGGCATTGTGGCTTG 62.098 55.000 0.00 0.00 41.25 4.01
288 289 3.762247 CCCGGCATTGTGGCTTGG 61.762 66.667 0.00 0.00 41.25 3.61
289 290 2.990967 CCGGCATTGTGGCTTGGT 60.991 61.111 0.00 0.00 41.25 3.67
290 291 2.573083 CCGGCATTGTGGCTTGGTT 61.573 57.895 0.00 0.00 41.25 3.67
291 292 1.373246 CGGCATTGTGGCTTGGTTG 60.373 57.895 2.03 0.00 41.25 3.77
292 293 1.747774 GGCATTGTGGCTTGGTTGT 59.252 52.632 0.00 0.00 40.14 3.32
293 294 0.600782 GGCATTGTGGCTTGGTTGTG 60.601 55.000 0.00 0.00 40.14 3.33
294 295 0.600782 GCATTGTGGCTTGGTTGTGG 60.601 55.000 0.00 0.00 0.00 4.17
295 296 0.600782 CATTGTGGCTTGGTTGTGGC 60.601 55.000 0.00 0.00 0.00 5.01
296 297 1.757423 ATTGTGGCTTGGTTGTGGCC 61.757 55.000 0.00 0.00 45.45 5.36
305 306 3.284449 GTTGTGGCCGCCGACTTT 61.284 61.111 15.15 0.00 0.00 2.66
306 307 1.962306 GTTGTGGCCGCCGACTTTA 60.962 57.895 15.15 0.00 0.00 1.85
307 308 1.669760 TTGTGGCCGCCGACTTTAG 60.670 57.895 15.15 0.00 0.00 1.85
308 309 2.102109 TTGTGGCCGCCGACTTTAGA 62.102 55.000 15.15 0.00 0.00 2.10
309 310 1.153429 GTGGCCGCCGACTTTAGAT 60.153 57.895 4.45 0.00 0.00 1.98
310 311 1.153449 TGGCCGCCGACTTTAGATG 60.153 57.895 4.58 0.00 0.00 2.90
311 312 1.153429 GGCCGCCGACTTTAGATGT 60.153 57.895 0.00 0.00 0.00 3.06
312 313 0.743345 GGCCGCCGACTTTAGATGTT 60.743 55.000 0.00 0.00 0.00 2.71
313 314 1.472026 GGCCGCCGACTTTAGATGTTA 60.472 52.381 0.00 0.00 0.00 2.41
314 315 1.859080 GCCGCCGACTTTAGATGTTAG 59.141 52.381 0.00 0.00 0.00 2.34
315 316 2.470821 CCGCCGACTTTAGATGTTAGG 58.529 52.381 0.00 0.00 0.00 2.69
316 317 1.859080 CGCCGACTTTAGATGTTAGGC 59.141 52.381 0.00 0.00 37.80 3.93
317 318 2.481449 CGCCGACTTTAGATGTTAGGCT 60.481 50.000 0.00 0.00 38.46 4.58
318 319 3.532542 GCCGACTTTAGATGTTAGGCTT 58.467 45.455 0.00 0.00 37.99 4.35
319 320 3.939592 GCCGACTTTAGATGTTAGGCTTT 59.060 43.478 0.00 0.00 37.99 3.51
320 321 4.201822 GCCGACTTTAGATGTTAGGCTTTG 60.202 45.833 0.00 0.00 37.99 2.77
321 322 5.175859 CCGACTTTAGATGTTAGGCTTTGA 58.824 41.667 0.00 0.00 0.00 2.69
322 323 5.817816 CCGACTTTAGATGTTAGGCTTTGAT 59.182 40.000 0.00 0.00 0.00 2.57
323 324 6.238211 CCGACTTTAGATGTTAGGCTTTGATG 60.238 42.308 0.00 0.00 0.00 3.07
324 325 6.313905 CGACTTTAGATGTTAGGCTTTGATGT 59.686 38.462 0.00 0.00 0.00 3.06
325 326 7.383102 ACTTTAGATGTTAGGCTTTGATGTG 57.617 36.000 0.00 0.00 0.00 3.21
326 327 7.168219 ACTTTAGATGTTAGGCTTTGATGTGA 58.832 34.615 0.00 0.00 0.00 3.58
327 328 7.665559 ACTTTAGATGTTAGGCTTTGATGTGAA 59.334 33.333 0.00 0.00 0.00 3.18
328 329 7.615582 TTAGATGTTAGGCTTTGATGTGAAG 57.384 36.000 0.00 0.00 0.00 3.02
329 330 5.564550 AGATGTTAGGCTTTGATGTGAAGT 58.435 37.500 0.00 0.00 0.00 3.01
330 331 6.006449 AGATGTTAGGCTTTGATGTGAAGTT 58.994 36.000 0.00 0.00 0.00 2.66
331 332 6.491403 AGATGTTAGGCTTTGATGTGAAGTTT 59.509 34.615 0.00 0.00 0.00 2.66
332 333 5.830912 TGTTAGGCTTTGATGTGAAGTTTG 58.169 37.500 0.00 0.00 0.00 2.93
333 334 5.359576 TGTTAGGCTTTGATGTGAAGTTTGT 59.640 36.000 0.00 0.00 0.00 2.83
334 335 6.127479 TGTTAGGCTTTGATGTGAAGTTTGTT 60.127 34.615 0.00 0.00 0.00 2.83
335 336 5.343307 AGGCTTTGATGTGAAGTTTGTTT 57.657 34.783 0.00 0.00 0.00 2.83
336 337 5.111293 AGGCTTTGATGTGAAGTTTGTTTG 58.889 37.500 0.00 0.00 0.00 2.93
337 338 4.270808 GGCTTTGATGTGAAGTTTGTTTGG 59.729 41.667 0.00 0.00 0.00 3.28
338 339 4.869861 GCTTTGATGTGAAGTTTGTTTGGT 59.130 37.500 0.00 0.00 0.00 3.67
339 340 6.039616 GCTTTGATGTGAAGTTTGTTTGGTA 58.960 36.000 0.00 0.00 0.00 3.25
340 341 6.701400 GCTTTGATGTGAAGTTTGTTTGGTAT 59.299 34.615 0.00 0.00 0.00 2.73
341 342 7.224557 GCTTTGATGTGAAGTTTGTTTGGTATT 59.775 33.333 0.00 0.00 0.00 1.89
342 343 8.641499 TTTGATGTGAAGTTTGTTTGGTATTC 57.359 30.769 0.00 0.00 0.00 1.75
343 344 6.434596 TGATGTGAAGTTTGTTTGGTATTCG 58.565 36.000 0.00 0.00 0.00 3.34
344 345 5.176407 TGTGAAGTTTGTTTGGTATTCGG 57.824 39.130 0.00 0.00 0.00 4.30
345 346 4.882427 TGTGAAGTTTGTTTGGTATTCGGA 59.118 37.500 0.00 0.00 0.00 4.55
346 347 5.533154 TGTGAAGTTTGTTTGGTATTCGGAT 59.467 36.000 0.00 0.00 0.00 4.18
347 348 6.039941 TGTGAAGTTTGTTTGGTATTCGGATT 59.960 34.615 0.00 0.00 0.00 3.01
348 349 6.362283 GTGAAGTTTGTTTGGTATTCGGATTG 59.638 38.462 0.00 0.00 0.00 2.67
349 350 5.385509 AGTTTGTTTGGTATTCGGATTGG 57.614 39.130 0.00 0.00 0.00 3.16
350 351 5.074115 AGTTTGTTTGGTATTCGGATTGGA 58.926 37.500 0.00 0.00 0.00 3.53
351 352 5.714806 AGTTTGTTTGGTATTCGGATTGGAT 59.285 36.000 0.00 0.00 0.00 3.41
352 353 6.210584 AGTTTGTTTGGTATTCGGATTGGATT 59.789 34.615 0.00 0.00 0.00 3.01
353 354 6.597832 TTGTTTGGTATTCGGATTGGATTT 57.402 33.333 0.00 0.00 0.00 2.17
354 355 6.597832 TGTTTGGTATTCGGATTGGATTTT 57.402 33.333 0.00 0.00 0.00 1.82
355 356 6.626302 TGTTTGGTATTCGGATTGGATTTTC 58.374 36.000 0.00 0.00 0.00 2.29
356 357 5.493133 TTGGTATTCGGATTGGATTTTCG 57.507 39.130 0.00 0.00 0.00 3.46
357 358 3.880490 TGGTATTCGGATTGGATTTTCGG 59.120 43.478 0.00 0.00 0.00 4.30
358 359 3.304458 GGTATTCGGATTGGATTTTCGGC 60.304 47.826 0.00 0.00 0.00 5.54
359 360 1.827681 TTCGGATTGGATTTTCGGCA 58.172 45.000 0.00 0.00 0.00 5.69
360 361 1.091537 TCGGATTGGATTTTCGGCAC 58.908 50.000 0.00 0.00 0.00 5.01
361 362 0.100503 CGGATTGGATTTTCGGCACC 59.899 55.000 0.00 0.00 0.00 5.01
362 363 0.459899 GGATTGGATTTTCGGCACCC 59.540 55.000 0.00 0.00 0.00 4.61
363 364 1.474330 GATTGGATTTTCGGCACCCT 58.526 50.000 0.00 0.00 0.00 4.34
364 365 1.824852 GATTGGATTTTCGGCACCCTT 59.175 47.619 0.00 0.00 0.00 3.95
365 366 1.710816 TTGGATTTTCGGCACCCTTT 58.289 45.000 0.00 0.00 0.00 3.11
366 367 1.253100 TGGATTTTCGGCACCCTTTC 58.747 50.000 0.00 0.00 0.00 2.62
367 368 1.253100 GGATTTTCGGCACCCTTTCA 58.747 50.000 0.00 0.00 0.00 2.69
368 369 1.824852 GGATTTTCGGCACCCTTTCAT 59.175 47.619 0.00 0.00 0.00 2.57
369 370 2.159240 GGATTTTCGGCACCCTTTCATC 60.159 50.000 0.00 0.00 0.00 2.92
370 371 1.988293 TTTTCGGCACCCTTTCATCA 58.012 45.000 0.00 0.00 0.00 3.07
371 372 1.988293 TTTCGGCACCCTTTCATCAA 58.012 45.000 0.00 0.00 0.00 2.57
372 373 1.533625 TTCGGCACCCTTTCATCAAG 58.466 50.000 0.00 0.00 0.00 3.02
373 374 0.400213 TCGGCACCCTTTCATCAAGT 59.600 50.000 0.00 0.00 0.00 3.16
374 375 0.523072 CGGCACCCTTTCATCAAGTG 59.477 55.000 0.00 0.00 0.00 3.16
375 376 0.890683 GGCACCCTTTCATCAAGTGG 59.109 55.000 0.00 0.00 0.00 4.00
376 377 1.547675 GGCACCCTTTCATCAAGTGGA 60.548 52.381 0.00 0.00 30.85 4.02
377 378 2.450476 GCACCCTTTCATCAAGTGGAT 58.550 47.619 0.00 0.00 36.39 3.41
378 379 3.620488 GCACCCTTTCATCAAGTGGATA 58.380 45.455 0.00 0.00 33.95 2.59
379 380 3.629398 GCACCCTTTCATCAAGTGGATAG 59.371 47.826 0.00 0.00 33.95 2.08
380 381 4.202441 CACCCTTTCATCAAGTGGATAGG 58.798 47.826 0.00 0.00 33.95 2.57
381 382 4.080356 CACCCTTTCATCAAGTGGATAGGA 60.080 45.833 0.00 0.00 33.95 2.94
382 383 4.164988 ACCCTTTCATCAAGTGGATAGGAG 59.835 45.833 0.00 0.00 33.95 3.69
383 384 4.164988 CCCTTTCATCAAGTGGATAGGAGT 59.835 45.833 0.00 0.00 33.95 3.85
384 385 5.366768 CCCTTTCATCAAGTGGATAGGAGTA 59.633 44.000 0.00 0.00 33.95 2.59
385 386 6.126768 CCCTTTCATCAAGTGGATAGGAGTAA 60.127 42.308 0.00 0.00 33.95 2.24
386 387 6.763610 CCTTTCATCAAGTGGATAGGAGTAAC 59.236 42.308 0.00 0.00 33.95 2.50
387 388 5.515797 TCATCAAGTGGATAGGAGTAACG 57.484 43.478 0.00 0.00 33.95 3.18
388 389 5.198207 TCATCAAGTGGATAGGAGTAACGA 58.802 41.667 0.00 0.00 33.95 3.85
389 390 4.978083 TCAAGTGGATAGGAGTAACGAC 57.022 45.455 0.00 0.00 0.00 4.34
390 391 3.376234 TCAAGTGGATAGGAGTAACGACG 59.624 47.826 0.00 0.00 0.00 5.12
391 392 2.295885 AGTGGATAGGAGTAACGACGG 58.704 52.381 0.00 0.00 0.00 4.79
392 393 2.092753 AGTGGATAGGAGTAACGACGGA 60.093 50.000 0.00 0.00 0.00 4.69
393 394 2.883386 GTGGATAGGAGTAACGACGGAT 59.117 50.000 0.00 0.00 0.00 4.18
394 395 4.067896 GTGGATAGGAGTAACGACGGATA 58.932 47.826 0.00 0.00 0.00 2.59
395 396 4.699257 GTGGATAGGAGTAACGACGGATAT 59.301 45.833 0.00 0.00 0.00 1.63
396 397 5.182760 GTGGATAGGAGTAACGACGGATATT 59.817 44.000 0.00 0.00 0.00 1.28
397 398 5.182570 TGGATAGGAGTAACGACGGATATTG 59.817 44.000 0.00 0.00 0.00 1.90
398 399 3.366440 AGGAGTAACGACGGATATTGC 57.634 47.619 0.00 0.00 0.00 3.56
399 400 2.035576 AGGAGTAACGACGGATATTGCC 59.964 50.000 0.00 0.00 0.00 4.52
410 411 1.604278 GGATATTGCCGAGAAGGTTGC 59.396 52.381 0.00 0.00 43.70 4.17
411 412 2.565841 GATATTGCCGAGAAGGTTGCT 58.434 47.619 0.00 0.00 43.70 3.91
412 413 2.489938 TATTGCCGAGAAGGTTGCTT 57.510 45.000 0.00 0.00 43.70 3.91
413 414 1.168714 ATTGCCGAGAAGGTTGCTTC 58.831 50.000 0.00 0.00 43.70 3.86
414 415 0.179032 TTGCCGAGAAGGTTGCTTCA 60.179 50.000 0.00 0.00 43.70 3.02
415 416 0.036732 TGCCGAGAAGGTTGCTTCAT 59.963 50.000 0.00 0.00 43.70 2.57
416 417 1.277842 TGCCGAGAAGGTTGCTTCATA 59.722 47.619 0.00 0.00 43.70 2.15
417 418 1.666189 GCCGAGAAGGTTGCTTCATAC 59.334 52.381 0.00 0.00 43.70 2.39
418 419 2.678190 GCCGAGAAGGTTGCTTCATACT 60.678 50.000 0.00 0.00 43.70 2.12
419 420 3.600388 CCGAGAAGGTTGCTTCATACTT 58.400 45.455 0.00 0.00 35.91 2.24
420 421 4.755411 CCGAGAAGGTTGCTTCATACTTA 58.245 43.478 0.00 0.00 35.91 2.24
421 422 4.806247 CCGAGAAGGTTGCTTCATACTTAG 59.194 45.833 0.00 0.00 35.91 2.18
422 423 5.411781 CGAGAAGGTTGCTTCATACTTAGT 58.588 41.667 0.00 0.00 35.91 2.24
423 424 5.289675 CGAGAAGGTTGCTTCATACTTAGTG 59.710 44.000 0.00 0.00 35.91 2.74
424 425 6.360370 AGAAGGTTGCTTCATACTTAGTGA 57.640 37.500 0.00 0.00 35.91 3.41
425 426 6.951971 AGAAGGTTGCTTCATACTTAGTGAT 58.048 36.000 0.00 0.00 35.91 3.06
426 427 6.820656 AGAAGGTTGCTTCATACTTAGTGATG 59.179 38.462 0.00 0.00 35.91 3.07
427 428 6.054860 AGGTTGCTTCATACTTAGTGATGT 57.945 37.500 0.00 0.00 0.00 3.06
428 429 7.182817 AGGTTGCTTCATACTTAGTGATGTA 57.817 36.000 0.00 0.00 0.00 2.29
429 430 7.796054 AGGTTGCTTCATACTTAGTGATGTAT 58.204 34.615 0.00 0.00 0.00 2.29
430 431 8.267894 AGGTTGCTTCATACTTAGTGATGTATT 58.732 33.333 0.00 0.00 0.00 1.89
431 432 9.542462 GGTTGCTTCATACTTAGTGATGTATTA 57.458 33.333 0.00 0.00 0.00 0.98
473 474 7.414436 TGAATAATTAATAAAGTGGCTGTCGC 58.586 34.615 0.00 0.00 0.00 5.19
511 512 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
512 513 4.930696 GGGGTCATCCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 35.33 1.52
513 514 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
545 546 7.703328 TCCTCTTTTCATTAAAACACACTGAC 58.297 34.615 0.00 0.00 31.37 3.51
650 654 0.911045 TCTGCTCAATCCCAGCTCCA 60.911 55.000 0.00 0.00 37.79 3.86
667 671 6.317857 CAGCTCCAAAAAGTCAAATACTAGC 58.682 40.000 0.00 0.00 37.50 3.42
668 672 6.003950 AGCTCCAAAAAGTCAAATACTAGCA 58.996 36.000 0.00 0.00 37.50 3.49
682 686 6.441093 AATACTAGCACACATGGATGTTTG 57.559 37.500 0.00 2.16 40.46 2.93
769 778 0.911769 TCTCATCTCCACGCCCAAAT 59.088 50.000 0.00 0.00 0.00 2.32
792 801 2.039613 GGATCCTCCCCATTCTCATCAC 59.960 54.545 3.84 0.00 0.00 3.06
928 940 0.878961 CCGCGGTATTGCTTCCCTAC 60.879 60.000 19.50 0.00 0.00 3.18
929 941 1.213094 CGCGGTATTGCTTCCCTACG 61.213 60.000 0.00 0.00 0.00 3.51
930 942 1.496403 GCGGTATTGCTTCCCTACGC 61.496 60.000 0.00 0.00 38.94 4.42
935 1007 1.369625 ATTGCTTCCCTACGCTTTCG 58.630 50.000 0.00 0.00 42.43 3.46
945 1017 1.990563 CTACGCTTTCGGGTGTACTTG 59.009 52.381 0.00 0.00 40.69 3.16
951 1023 4.501071 GCTTTCGGGTGTACTTGAAGATA 58.499 43.478 0.00 0.00 0.00 1.98
961 1033 8.483758 GGGTGTACTTGAAGATATCCTTTTCTA 58.516 37.037 0.00 0.00 34.68 2.10
1033 1122 7.127032 ACTCAAATGATCTATGGGAGAAGAAGT 59.873 37.037 0.00 0.00 37.85 3.01
1349 1449 3.446873 TCCAGAATGAGCTCAGTTCTCTC 59.553 47.826 25.66 12.88 39.69 3.20
1495 1600 5.565592 TGCTTTGAATATGTAGGCAACAG 57.434 39.130 0.00 0.00 42.70 3.16
1528 1633 8.200120 TCATGACTACATCTCAGGTAAAATCAG 58.800 37.037 0.00 0.00 34.15 2.90
1535 1640 6.591834 ACATCTCAGGTAAAATCAGAGAAACG 59.408 38.462 0.00 0.00 38.66 3.60
1538 1643 4.690748 TCAGGTAAAATCAGAGAAACGCTG 59.309 41.667 0.00 0.00 32.70 5.18
1613 1718 9.047371 GCTTTTAGCAAAGTTTTAAATAACCCA 57.953 29.630 0.00 0.00 41.89 4.51
1709 1845 7.350382 TGATGCTAATAACCTGGTATTTTCCA 58.650 34.615 0.00 0.00 36.00 3.53
1741 1877 5.127031 GCTAAATTTGGAGTCATTTAGGCCA 59.873 40.000 5.01 0.00 40.85 5.36
1844 1980 6.767524 TGGTTATTAAATTAGCACACCTGG 57.232 37.500 0.00 0.00 0.00 4.45
1986 2539 2.514824 GGGGGCTTAGCTTCGCTG 60.515 66.667 3.59 0.00 40.10 5.18
2147 2774 1.918293 TCTCCGTGCCCACCAGATT 60.918 57.895 0.00 0.00 0.00 2.40
2161 2788 2.746277 GATTCGGGTTGCCGCTGT 60.746 61.111 0.00 0.00 0.00 4.40
2168 2795 2.031163 GTTGCCGCTGTGAGAGGT 59.969 61.111 0.00 0.00 37.51 3.85
2174 2801 1.218316 CGCTGTGAGAGGTAACCCC 59.782 63.158 0.00 0.00 37.17 4.95
2274 2901 2.577059 CGGCGCTAGGGTTCTTGA 59.423 61.111 7.64 0.00 0.00 3.02
2404 3051 6.318628 TGTGTTGCCATCGTAACATAATTTC 58.681 36.000 0.00 0.00 44.81 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.401873 CGGGACTAAAGAAAATTTTACGATTTT 57.598 29.630 2.75 3.45 40.80 1.82
22 23 8.024865 CCGGGACTAAAGAAAATTTTACGATTT 58.975 33.333 2.75 5.91 0.00 2.17
23 24 7.175467 ACCGGGACTAAAGAAAATTTTACGATT 59.825 33.333 6.32 0.06 0.00 3.34
24 25 6.656270 ACCGGGACTAAAGAAAATTTTACGAT 59.344 34.615 6.32 0.00 0.00 3.73
25 26 5.997129 ACCGGGACTAAAGAAAATTTTACGA 59.003 36.000 6.32 0.00 0.00 3.43
26 27 6.245115 ACCGGGACTAAAGAAAATTTTACG 57.755 37.500 6.32 0.00 0.00 3.18
27 28 6.864685 CCAACCGGGACTAAAGAAAATTTTAC 59.135 38.462 6.32 0.00 40.01 2.01
28 29 6.550481 ACCAACCGGGACTAAAGAAAATTTTA 59.450 34.615 6.32 0.00 41.15 1.52
29 30 5.364446 ACCAACCGGGACTAAAGAAAATTTT 59.636 36.000 6.32 2.28 41.15 1.82
30 31 4.897076 ACCAACCGGGACTAAAGAAAATTT 59.103 37.500 6.32 0.00 41.15 1.82
31 32 4.279922 CACCAACCGGGACTAAAGAAAATT 59.720 41.667 6.32 0.00 41.15 1.82
32 33 3.824443 CACCAACCGGGACTAAAGAAAAT 59.176 43.478 6.32 0.00 41.15 1.82
33 34 3.215975 CACCAACCGGGACTAAAGAAAA 58.784 45.455 6.32 0.00 41.15 2.29
34 35 2.173143 ACACCAACCGGGACTAAAGAAA 59.827 45.455 6.32 0.00 41.15 2.52
35 36 1.770061 ACACCAACCGGGACTAAAGAA 59.230 47.619 6.32 0.00 41.15 2.52
36 37 1.426751 ACACCAACCGGGACTAAAGA 58.573 50.000 6.32 0.00 41.15 2.52
37 38 2.265589 AACACCAACCGGGACTAAAG 57.734 50.000 6.32 0.00 41.15 1.85
38 39 2.224499 GGTAACACCAACCGGGACTAAA 60.224 50.000 6.32 0.00 38.42 1.85
39 40 1.347378 GGTAACACCAACCGGGACTAA 59.653 52.381 6.32 0.00 38.42 2.24
40 41 0.975887 GGTAACACCAACCGGGACTA 59.024 55.000 6.32 0.00 38.42 2.59
41 42 1.756665 GGTAACACCAACCGGGACT 59.243 57.895 6.32 0.00 38.42 3.85
42 43 4.384599 GGTAACACCAACCGGGAC 57.615 61.111 6.32 0.00 38.42 4.46
54 55 4.084265 CCGGTTGGGGTTGGTAAC 57.916 61.111 0.00 0.00 0.00 2.50
64 65 0.322187 CCACCTTTAGTCCCGGTTGG 60.322 60.000 0.00 0.00 0.00 3.77
65 66 0.688487 TCCACCTTTAGTCCCGGTTG 59.312 55.000 0.00 0.00 0.00 3.77
66 67 0.981943 CTCCACCTTTAGTCCCGGTT 59.018 55.000 0.00 0.00 0.00 4.44
67 68 1.551019 GCTCCACCTTTAGTCCCGGT 61.551 60.000 0.00 0.00 0.00 5.28
68 69 1.221021 GCTCCACCTTTAGTCCCGG 59.779 63.158 0.00 0.00 0.00 5.73
69 70 0.175989 GAGCTCCACCTTTAGTCCCG 59.824 60.000 0.87 0.00 0.00 5.14
70 71 0.542333 GGAGCTCCACCTTTAGTCCC 59.458 60.000 28.43 0.00 35.64 4.46
71 72 1.276622 TGGAGCTCCACCTTTAGTCC 58.723 55.000 32.00 1.86 42.01 3.85
98 99 3.617143 AACCGGGACTAAAGGCCGC 62.617 63.158 6.32 0.00 0.00 6.53
99 100 1.449070 GAACCGGGACTAAAGGCCG 60.449 63.158 6.32 0.00 0.00 6.13
100 101 1.449070 CGAACCGGGACTAAAGGCC 60.449 63.158 6.32 0.00 0.00 5.19
101 102 0.321034 AACGAACCGGGACTAAAGGC 60.321 55.000 6.32 0.00 0.00 4.35
102 103 2.174363 AAACGAACCGGGACTAAAGG 57.826 50.000 6.32 0.00 0.00 3.11
103 104 4.559153 TCTTAAACGAACCGGGACTAAAG 58.441 43.478 6.32 0.54 0.00 1.85
104 105 4.599047 TCTTAAACGAACCGGGACTAAA 57.401 40.909 6.32 0.00 0.00 1.85
105 106 4.306600 GTTCTTAAACGAACCGGGACTAA 58.693 43.478 6.32 0.00 37.82 2.24
106 107 3.913089 GTTCTTAAACGAACCGGGACTA 58.087 45.455 6.32 0.00 37.82 2.59
107 108 2.759191 GTTCTTAAACGAACCGGGACT 58.241 47.619 6.32 0.00 37.82 3.85
114 115 2.759191 AGTCCCGGTTCTTAAACGAAC 58.241 47.619 0.00 0.12 41.91 3.95
115 116 4.599047 TTAGTCCCGGTTCTTAAACGAA 57.401 40.909 0.00 0.00 36.16 3.85
116 117 4.559153 CTTTAGTCCCGGTTCTTAAACGA 58.441 43.478 0.00 0.00 36.16 3.85
117 118 3.681417 CCTTTAGTCCCGGTTCTTAAACG 59.319 47.826 0.00 0.00 36.16 3.60
118 119 4.005650 CCCTTTAGTCCCGGTTCTTAAAC 58.994 47.826 0.00 0.00 34.46 2.01
119 120 3.009363 CCCCTTTAGTCCCGGTTCTTAAA 59.991 47.826 0.00 0.00 0.00 1.52
120 121 2.573009 CCCCTTTAGTCCCGGTTCTTAA 59.427 50.000 0.00 0.00 0.00 1.85
121 122 2.190538 CCCCTTTAGTCCCGGTTCTTA 58.809 52.381 0.00 0.00 0.00 2.10
122 123 0.989602 CCCCTTTAGTCCCGGTTCTT 59.010 55.000 0.00 0.00 0.00 2.52
123 124 0.117742 TCCCCTTTAGTCCCGGTTCT 59.882 55.000 0.00 0.15 0.00 3.01
124 125 0.540454 CTCCCCTTTAGTCCCGGTTC 59.460 60.000 0.00 0.00 0.00 3.62
125 126 0.117742 TCTCCCCTTTAGTCCCGGTT 59.882 55.000 0.00 0.00 0.00 4.44
126 127 0.325390 CTCTCCCCTTTAGTCCCGGT 60.325 60.000 0.00 0.00 0.00 5.28
127 128 1.049289 CCTCTCCCCTTTAGTCCCGG 61.049 65.000 0.00 0.00 0.00 5.73
128 129 1.687297 GCCTCTCCCCTTTAGTCCCG 61.687 65.000 0.00 0.00 0.00 5.14
129 130 0.620700 TGCCTCTCCCCTTTAGTCCC 60.621 60.000 0.00 0.00 0.00 4.46
130 131 1.512735 ATGCCTCTCCCCTTTAGTCC 58.487 55.000 0.00 0.00 0.00 3.85
131 132 3.712218 ACTAATGCCTCTCCCCTTTAGTC 59.288 47.826 0.00 0.00 30.65 2.59
132 133 3.737263 ACTAATGCCTCTCCCCTTTAGT 58.263 45.455 0.00 0.00 31.21 2.24
133 134 5.612351 GTTACTAATGCCTCTCCCCTTTAG 58.388 45.833 0.00 0.00 0.00 1.85
134 135 4.100498 CGTTACTAATGCCTCTCCCCTTTA 59.900 45.833 0.00 0.00 0.00 1.85
135 136 3.118371 CGTTACTAATGCCTCTCCCCTTT 60.118 47.826 0.00 0.00 0.00 3.11
136 137 2.434702 CGTTACTAATGCCTCTCCCCTT 59.565 50.000 0.00 0.00 0.00 3.95
137 138 2.040178 CGTTACTAATGCCTCTCCCCT 58.960 52.381 0.00 0.00 0.00 4.79
138 139 2.037144 TCGTTACTAATGCCTCTCCCC 58.963 52.381 0.00 0.00 0.00 4.81
139 140 2.223994 GGTCGTTACTAATGCCTCTCCC 60.224 54.545 0.00 0.00 0.00 4.30
140 141 2.223994 GGGTCGTTACTAATGCCTCTCC 60.224 54.545 0.00 0.00 0.00 3.71
141 142 2.694109 AGGGTCGTTACTAATGCCTCTC 59.306 50.000 0.00 0.00 0.00 3.20
142 143 2.748388 AGGGTCGTTACTAATGCCTCT 58.252 47.619 0.00 0.00 0.00 3.69
143 144 3.538634 AAGGGTCGTTACTAATGCCTC 57.461 47.619 0.00 0.00 0.00 4.70
144 145 3.994931 AAAGGGTCGTTACTAATGCCT 57.005 42.857 0.00 0.00 0.00 4.75
145 146 4.763073 ACTAAAGGGTCGTTACTAATGCC 58.237 43.478 0.00 0.00 0.00 4.40
146 147 4.807834 GGACTAAAGGGTCGTTACTAATGC 59.192 45.833 0.00 0.00 37.12 3.56
147 148 5.354767 GGGACTAAAGGGTCGTTACTAATG 58.645 45.833 0.00 0.00 37.12 1.90
148 149 4.098501 CGGGACTAAAGGGTCGTTACTAAT 59.901 45.833 0.00 0.00 37.12 1.73
149 150 3.443681 CGGGACTAAAGGGTCGTTACTAA 59.556 47.826 0.00 0.00 37.12 2.24
150 151 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
151 152 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
152 153 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
153 154 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
154 155 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
155 156 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
156 157 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
157 158 0.978907 TGAACCGGGACTAAAGGGTC 59.021 55.000 6.32 0.00 41.92 4.46
158 159 1.437397 TTGAACCGGGACTAAAGGGT 58.563 50.000 6.32 0.00 0.00 4.34
159 160 2.572209 TTTGAACCGGGACTAAAGGG 57.428 50.000 6.32 0.00 0.00 3.95
160 161 3.005050 GGTTTTTGAACCGGGACTAAAGG 59.995 47.826 6.32 0.00 32.47 3.11
161 162 4.233123 GGTTTTTGAACCGGGACTAAAG 57.767 45.455 6.32 0.00 32.47 1.85
171 172 4.552355 CATTTAGTCCCGGTTTTTGAACC 58.448 43.478 0.00 0.00 39.44 3.62
172 173 4.552355 CCATTTAGTCCCGGTTTTTGAAC 58.448 43.478 0.00 0.00 0.00 3.18
173 174 3.006003 GCCATTTAGTCCCGGTTTTTGAA 59.994 43.478 0.00 0.00 0.00 2.69
174 175 2.559231 GCCATTTAGTCCCGGTTTTTGA 59.441 45.455 0.00 0.00 0.00 2.69
175 176 2.353307 GGCCATTTAGTCCCGGTTTTTG 60.353 50.000 0.00 0.00 0.00 2.44
176 177 1.897133 GGCCATTTAGTCCCGGTTTTT 59.103 47.619 0.00 0.00 0.00 1.94
177 178 1.076513 AGGCCATTTAGTCCCGGTTTT 59.923 47.619 5.01 0.00 0.00 2.43
178 179 0.702316 AGGCCATTTAGTCCCGGTTT 59.298 50.000 5.01 0.00 0.00 3.27
179 180 0.702316 AAGGCCATTTAGTCCCGGTT 59.298 50.000 5.01 0.00 0.00 4.44
180 181 1.211212 GTAAGGCCATTTAGTCCCGGT 59.789 52.381 5.01 0.00 0.00 5.28
181 182 1.476291 GGTAAGGCCATTTAGTCCCGG 60.476 57.143 5.01 0.00 37.17 5.73
182 183 1.210967 TGGTAAGGCCATTTAGTCCCG 59.789 52.381 5.01 0.00 43.61 5.14
193 194 2.045634 GTCCCGGTTGGTAAGGCC 60.046 66.667 0.00 0.00 34.77 5.19
194 195 0.537828 TTTGTCCCGGTTGGTAAGGC 60.538 55.000 0.00 0.00 34.77 4.35
195 196 1.883926 CTTTTGTCCCGGTTGGTAAGG 59.116 52.381 0.00 0.00 34.77 2.69
196 197 2.551032 GACTTTTGTCCCGGTTGGTAAG 59.449 50.000 0.00 0.90 43.37 2.34
197 198 2.574450 GACTTTTGTCCCGGTTGGTAA 58.426 47.619 0.00 0.00 43.37 2.85
198 199 2.259266 GACTTTTGTCCCGGTTGGTA 57.741 50.000 0.00 0.00 43.37 3.25
199 200 3.105187 GACTTTTGTCCCGGTTGGT 57.895 52.632 0.00 0.00 43.37 3.67
215 216 4.224762 AGGCCACTAGTAGATAAAGGGAC 58.775 47.826 5.01 0.00 0.00 4.46
216 217 4.170251 AGAGGCCACTAGTAGATAAAGGGA 59.830 45.833 5.01 0.00 0.00 4.20
217 218 4.282195 CAGAGGCCACTAGTAGATAAAGGG 59.718 50.000 5.01 0.00 0.00 3.95
218 219 5.141182 TCAGAGGCCACTAGTAGATAAAGG 58.859 45.833 5.01 0.00 0.00 3.11
219 220 6.065374 TCTCAGAGGCCACTAGTAGATAAAG 58.935 44.000 5.01 0.00 0.00 1.85
220 221 6.014771 TCTCAGAGGCCACTAGTAGATAAA 57.985 41.667 5.01 0.00 0.00 1.40
221 222 5.132985 ACTCTCAGAGGCCACTAGTAGATAA 59.867 44.000 5.01 0.00 33.35 1.75
222 223 4.661240 ACTCTCAGAGGCCACTAGTAGATA 59.339 45.833 5.01 0.00 33.35 1.98
223 224 3.461831 ACTCTCAGAGGCCACTAGTAGAT 59.538 47.826 5.01 0.00 33.35 1.98
224 225 2.847449 ACTCTCAGAGGCCACTAGTAGA 59.153 50.000 5.01 7.18 33.35 2.59
225 226 2.948979 CACTCTCAGAGGCCACTAGTAG 59.051 54.545 5.01 4.41 33.35 2.57
226 227 2.946341 GCACTCTCAGAGGCCACTAGTA 60.946 54.545 5.01 0.00 33.35 1.82
227 228 1.846007 CACTCTCAGAGGCCACTAGT 58.154 55.000 5.01 1.20 33.35 2.57
228 229 0.459489 GCACTCTCAGAGGCCACTAG 59.541 60.000 5.01 0.44 33.35 2.57
229 230 1.315981 CGCACTCTCAGAGGCCACTA 61.316 60.000 5.01 0.00 33.35 2.74
230 231 2.644212 CGCACTCTCAGAGGCCACT 61.644 63.158 5.01 0.00 33.35 4.00
231 232 2.125753 CGCACTCTCAGAGGCCAC 60.126 66.667 5.01 0.00 33.35 5.01
232 233 4.074526 GCGCACTCTCAGAGGCCA 62.075 66.667 5.01 0.00 33.35 5.36
233 234 4.828925 GGCGCACTCTCAGAGGCC 62.829 72.222 10.83 5.62 33.35 5.19
235 236 4.504916 CCGGCGCACTCTCAGAGG 62.505 72.222 10.83 0.00 33.35 3.69
236 237 3.443925 TCCGGCGCACTCTCAGAG 61.444 66.667 10.83 0.00 35.52 3.35
237 238 3.749064 GTCCGGCGCACTCTCAGA 61.749 66.667 10.83 0.00 0.00 3.27
238 239 4.803426 GGTCCGGCGCACTCTCAG 62.803 72.222 10.83 0.00 0.00 3.35
250 251 2.106332 GAGGCATACACCGGTCCG 59.894 66.667 2.59 3.60 33.69 4.79
251 252 0.035820 TTTGAGGCATACACCGGTCC 60.036 55.000 2.59 1.58 33.69 4.46
252 253 1.084289 GTTTGAGGCATACACCGGTC 58.916 55.000 2.59 0.00 33.69 4.79
253 254 0.322187 GGTTTGAGGCATACACCGGT 60.322 55.000 0.00 0.00 33.69 5.28
254 255 1.029947 GGGTTTGAGGCATACACCGG 61.030 60.000 0.00 0.00 33.69 5.28
255 256 1.366111 CGGGTTTGAGGCATACACCG 61.366 60.000 0.00 0.00 33.69 4.94
256 257 1.029947 CCGGGTTTGAGGCATACACC 61.030 60.000 0.00 0.00 0.00 4.16
257 258 2.477880 CCGGGTTTGAGGCATACAC 58.522 57.895 0.00 0.00 0.00 2.90
264 265 1.586028 CACAATGCCGGGTTTGAGG 59.414 57.895 15.70 6.44 0.00 3.86
265 266 1.586028 CCACAATGCCGGGTTTGAG 59.414 57.895 15.70 9.50 0.00 3.02
266 267 2.569354 GCCACAATGCCGGGTTTGA 61.569 57.895 15.70 0.00 0.00 2.69
267 268 2.048316 GCCACAATGCCGGGTTTG 60.048 61.111 2.18 9.42 0.00 2.93
268 269 1.836604 AAGCCACAATGCCGGGTTT 60.837 52.632 2.18 0.00 39.97 3.27
269 270 2.203625 AAGCCACAATGCCGGGTT 60.204 55.556 2.18 1.45 38.16 4.11
270 271 2.990967 CAAGCCACAATGCCGGGT 60.991 61.111 2.18 0.00 33.45 5.28
271 272 3.762247 CCAAGCCACAATGCCGGG 61.762 66.667 2.18 0.00 0.00 5.73
272 273 2.573083 AACCAAGCCACAATGCCGG 61.573 57.895 0.00 0.00 0.00 6.13
273 274 1.373246 CAACCAAGCCACAATGCCG 60.373 57.895 0.00 0.00 0.00 5.69
274 275 0.600782 CACAACCAAGCCACAATGCC 60.601 55.000 0.00 0.00 0.00 4.40
275 276 0.600782 CCACAACCAAGCCACAATGC 60.601 55.000 0.00 0.00 0.00 3.56
276 277 0.600782 GCCACAACCAAGCCACAATG 60.601 55.000 0.00 0.00 0.00 2.82
277 278 1.747774 GCCACAACCAAGCCACAAT 59.252 52.632 0.00 0.00 0.00 2.71
278 279 2.430610 GGCCACAACCAAGCCACAA 61.431 57.895 0.00 0.00 46.34 3.33
279 280 2.837291 GGCCACAACCAAGCCACA 60.837 61.111 0.00 0.00 46.34 4.17
288 289 1.908066 CTAAAGTCGGCGGCCACAAC 61.908 60.000 20.71 13.46 0.00 3.32
289 290 1.669760 CTAAAGTCGGCGGCCACAA 60.670 57.895 20.71 0.10 0.00 3.33
290 291 1.895020 ATCTAAAGTCGGCGGCCACA 61.895 55.000 20.71 0.95 0.00 4.17
291 292 1.153429 ATCTAAAGTCGGCGGCCAC 60.153 57.895 20.71 15.66 0.00 5.01
292 293 1.153449 CATCTAAAGTCGGCGGCCA 60.153 57.895 20.71 3.24 0.00 5.36
293 294 0.743345 AACATCTAAAGTCGGCGGCC 60.743 55.000 8.37 9.54 0.00 6.13
294 295 1.859080 CTAACATCTAAAGTCGGCGGC 59.141 52.381 1.71 1.71 0.00 6.53
295 296 2.470821 CCTAACATCTAAAGTCGGCGG 58.529 52.381 7.21 0.00 0.00 6.13
296 297 1.859080 GCCTAACATCTAAAGTCGGCG 59.141 52.381 0.00 0.00 0.00 6.46
297 298 3.180891 AGCCTAACATCTAAAGTCGGC 57.819 47.619 0.00 0.00 36.38 5.54
298 299 5.175859 TCAAAGCCTAACATCTAAAGTCGG 58.824 41.667 0.00 0.00 0.00 4.79
299 300 6.313905 ACATCAAAGCCTAACATCTAAAGTCG 59.686 38.462 0.00 0.00 0.00 4.18
300 301 7.334421 TCACATCAAAGCCTAACATCTAAAGTC 59.666 37.037 0.00 0.00 0.00 3.01
301 302 7.168219 TCACATCAAAGCCTAACATCTAAAGT 58.832 34.615 0.00 0.00 0.00 2.66
302 303 7.615582 TCACATCAAAGCCTAACATCTAAAG 57.384 36.000 0.00 0.00 0.00 1.85
303 304 7.665559 ACTTCACATCAAAGCCTAACATCTAAA 59.334 33.333 0.00 0.00 0.00 1.85
304 305 7.168219 ACTTCACATCAAAGCCTAACATCTAA 58.832 34.615 0.00 0.00 0.00 2.10
305 306 6.711277 ACTTCACATCAAAGCCTAACATCTA 58.289 36.000 0.00 0.00 0.00 1.98
306 307 5.564550 ACTTCACATCAAAGCCTAACATCT 58.435 37.500 0.00 0.00 0.00 2.90
307 308 5.886960 ACTTCACATCAAAGCCTAACATC 57.113 39.130 0.00 0.00 0.00 3.06
308 309 6.040842 ACAAACTTCACATCAAAGCCTAACAT 59.959 34.615 0.00 0.00 0.00 2.71
309 310 5.359576 ACAAACTTCACATCAAAGCCTAACA 59.640 36.000 0.00 0.00 0.00 2.41
310 311 5.831997 ACAAACTTCACATCAAAGCCTAAC 58.168 37.500 0.00 0.00 0.00 2.34
311 312 6.463995 AACAAACTTCACATCAAAGCCTAA 57.536 33.333 0.00 0.00 0.00 2.69
312 313 6.272318 CAAACAAACTTCACATCAAAGCCTA 58.728 36.000 0.00 0.00 0.00 3.93
313 314 5.111293 CAAACAAACTTCACATCAAAGCCT 58.889 37.500 0.00 0.00 0.00 4.58
314 315 4.270808 CCAAACAAACTTCACATCAAAGCC 59.729 41.667 0.00 0.00 0.00 4.35
315 316 4.869861 ACCAAACAAACTTCACATCAAAGC 59.130 37.500 0.00 0.00 0.00 3.51
316 317 8.647143 AATACCAAACAAACTTCACATCAAAG 57.353 30.769 0.00 0.00 0.00 2.77
317 318 7.433719 CGAATACCAAACAAACTTCACATCAAA 59.566 33.333 0.00 0.00 0.00 2.69
318 319 6.915300 CGAATACCAAACAAACTTCACATCAA 59.085 34.615 0.00 0.00 0.00 2.57
319 320 6.434596 CGAATACCAAACAAACTTCACATCA 58.565 36.000 0.00 0.00 0.00 3.07
320 321 5.856455 CCGAATACCAAACAAACTTCACATC 59.144 40.000 0.00 0.00 0.00 3.06
321 322 5.533154 TCCGAATACCAAACAAACTTCACAT 59.467 36.000 0.00 0.00 0.00 3.21
322 323 4.882427 TCCGAATACCAAACAAACTTCACA 59.118 37.500 0.00 0.00 0.00 3.58
323 324 5.427036 TCCGAATACCAAACAAACTTCAC 57.573 39.130 0.00 0.00 0.00 3.18
324 325 6.442952 CAATCCGAATACCAAACAAACTTCA 58.557 36.000 0.00 0.00 0.00 3.02
325 326 5.861787 CCAATCCGAATACCAAACAAACTTC 59.138 40.000 0.00 0.00 0.00 3.01
326 327 5.536916 TCCAATCCGAATACCAAACAAACTT 59.463 36.000 0.00 0.00 0.00 2.66
327 328 5.074115 TCCAATCCGAATACCAAACAAACT 58.926 37.500 0.00 0.00 0.00 2.66
328 329 5.379732 TCCAATCCGAATACCAAACAAAC 57.620 39.130 0.00 0.00 0.00 2.93
329 330 6.597832 AATCCAATCCGAATACCAAACAAA 57.402 33.333 0.00 0.00 0.00 2.83
330 331 6.597832 AAATCCAATCCGAATACCAAACAA 57.402 33.333 0.00 0.00 0.00 2.83
331 332 6.597832 AAAATCCAATCCGAATACCAAACA 57.402 33.333 0.00 0.00 0.00 2.83
332 333 5.741982 CGAAAATCCAATCCGAATACCAAAC 59.258 40.000 0.00 0.00 0.00 2.93
333 334 5.163602 CCGAAAATCCAATCCGAATACCAAA 60.164 40.000 0.00 0.00 0.00 3.28
334 335 4.336993 CCGAAAATCCAATCCGAATACCAA 59.663 41.667 0.00 0.00 0.00 3.67
335 336 3.880490 CCGAAAATCCAATCCGAATACCA 59.120 43.478 0.00 0.00 0.00 3.25
336 337 3.304458 GCCGAAAATCCAATCCGAATACC 60.304 47.826 0.00 0.00 0.00 2.73
337 338 3.314080 TGCCGAAAATCCAATCCGAATAC 59.686 43.478 0.00 0.00 0.00 1.89
338 339 3.314080 GTGCCGAAAATCCAATCCGAATA 59.686 43.478 0.00 0.00 0.00 1.75
339 340 2.099098 GTGCCGAAAATCCAATCCGAAT 59.901 45.455 0.00 0.00 0.00 3.34
340 341 1.470890 GTGCCGAAAATCCAATCCGAA 59.529 47.619 0.00 0.00 0.00 4.30
341 342 1.091537 GTGCCGAAAATCCAATCCGA 58.908 50.000 0.00 0.00 0.00 4.55
342 343 0.100503 GGTGCCGAAAATCCAATCCG 59.899 55.000 0.00 0.00 0.00 4.18
343 344 0.459899 GGGTGCCGAAAATCCAATCC 59.540 55.000 0.00 0.00 0.00 3.01
344 345 1.474330 AGGGTGCCGAAAATCCAATC 58.526 50.000 0.00 0.00 0.00 2.67
345 346 1.937191 AAGGGTGCCGAAAATCCAAT 58.063 45.000 0.00 0.00 0.00 3.16
346 347 1.616374 GAAAGGGTGCCGAAAATCCAA 59.384 47.619 0.00 0.00 0.00 3.53
347 348 1.253100 GAAAGGGTGCCGAAAATCCA 58.747 50.000 0.00 0.00 0.00 3.41
348 349 1.253100 TGAAAGGGTGCCGAAAATCC 58.747 50.000 0.00 0.00 0.00 3.01
349 350 2.491693 TGATGAAAGGGTGCCGAAAATC 59.508 45.455 0.00 0.00 0.00 2.17
350 351 2.524306 TGATGAAAGGGTGCCGAAAAT 58.476 42.857 0.00 0.00 0.00 1.82
351 352 1.988293 TGATGAAAGGGTGCCGAAAA 58.012 45.000 0.00 0.00 0.00 2.29
352 353 1.885887 CTTGATGAAAGGGTGCCGAAA 59.114 47.619 0.00 0.00 31.68 3.46
353 354 1.202879 ACTTGATGAAAGGGTGCCGAA 60.203 47.619 0.00 0.00 40.51 4.30
354 355 0.400213 ACTTGATGAAAGGGTGCCGA 59.600 50.000 0.00 0.00 40.51 5.54
355 356 0.523072 CACTTGATGAAAGGGTGCCG 59.477 55.000 0.00 0.00 40.51 5.69
356 357 0.890683 CCACTTGATGAAAGGGTGCC 59.109 55.000 0.00 0.00 37.63 5.01
357 358 1.909700 TCCACTTGATGAAAGGGTGC 58.090 50.000 0.00 0.00 37.63 5.01
358 359 4.080356 TCCTATCCACTTGATGAAAGGGTG 60.080 45.833 0.00 0.00 37.63 4.61
359 360 4.111577 TCCTATCCACTTGATGAAAGGGT 58.888 43.478 0.00 0.00 37.63 4.34
360 361 4.164988 ACTCCTATCCACTTGATGAAAGGG 59.835 45.833 0.00 0.00 40.51 3.95
361 362 5.365021 ACTCCTATCCACTTGATGAAAGG 57.635 43.478 0.00 0.00 40.51 3.11
362 363 6.477033 CGTTACTCCTATCCACTTGATGAAAG 59.523 42.308 0.00 0.00 42.07 2.62
363 364 6.153851 TCGTTACTCCTATCCACTTGATGAAA 59.846 38.462 0.00 0.00 34.76 2.69
364 365 5.655090 TCGTTACTCCTATCCACTTGATGAA 59.345 40.000 0.00 0.00 34.76 2.57
365 366 5.067413 GTCGTTACTCCTATCCACTTGATGA 59.933 44.000 0.00 0.00 34.76 2.92
366 367 5.282510 GTCGTTACTCCTATCCACTTGATG 58.717 45.833 0.00 0.00 34.76 3.07
367 368 4.036498 CGTCGTTACTCCTATCCACTTGAT 59.964 45.833 0.00 0.00 37.49 2.57
368 369 3.376234 CGTCGTTACTCCTATCCACTTGA 59.624 47.826 0.00 0.00 0.00 3.02
369 370 3.488721 CCGTCGTTACTCCTATCCACTTG 60.489 52.174 0.00 0.00 0.00 3.16
370 371 2.686915 CCGTCGTTACTCCTATCCACTT 59.313 50.000 0.00 0.00 0.00 3.16
371 372 2.092753 TCCGTCGTTACTCCTATCCACT 60.093 50.000 0.00 0.00 0.00 4.00
372 373 2.292267 TCCGTCGTTACTCCTATCCAC 58.708 52.381 0.00 0.00 0.00 4.02
373 374 2.715749 TCCGTCGTTACTCCTATCCA 57.284 50.000 0.00 0.00 0.00 3.41
374 375 5.638783 CAATATCCGTCGTTACTCCTATCC 58.361 45.833 0.00 0.00 0.00 2.59
375 376 5.094134 GCAATATCCGTCGTTACTCCTATC 58.906 45.833 0.00 0.00 0.00 2.08
376 377 4.082354 GGCAATATCCGTCGTTACTCCTAT 60.082 45.833 0.00 0.00 0.00 2.57
377 378 3.254166 GGCAATATCCGTCGTTACTCCTA 59.746 47.826 0.00 0.00 0.00 2.94
378 379 2.035576 GGCAATATCCGTCGTTACTCCT 59.964 50.000 0.00 0.00 0.00 3.69
379 380 2.401351 GGCAATATCCGTCGTTACTCC 58.599 52.381 0.00 0.00 0.00 3.85
380 381 2.049228 CGGCAATATCCGTCGTTACTC 58.951 52.381 0.00 0.00 44.18 2.59
381 382 2.129823 CGGCAATATCCGTCGTTACT 57.870 50.000 0.00 0.00 44.18 2.24
390 391 1.604278 GCAACCTTCTCGGCAATATCC 59.396 52.381 0.00 0.00 35.61 2.59
391 392 2.565841 AGCAACCTTCTCGGCAATATC 58.434 47.619 0.00 0.00 35.61 1.63
392 393 2.717639 AGCAACCTTCTCGGCAATAT 57.282 45.000 0.00 0.00 35.61 1.28
393 394 2.290008 TGAAGCAACCTTCTCGGCAATA 60.290 45.455 5.21 0.00 46.13 1.90
394 395 1.168714 GAAGCAACCTTCTCGGCAAT 58.831 50.000 0.00 0.00 43.31 3.56
395 396 0.179032 TGAAGCAACCTTCTCGGCAA 60.179 50.000 5.21 0.00 46.13 4.52
396 397 0.036732 ATGAAGCAACCTTCTCGGCA 59.963 50.000 5.21 0.00 46.13 5.69
397 398 1.666189 GTATGAAGCAACCTTCTCGGC 59.334 52.381 5.21 0.00 46.13 5.54
398 399 3.252974 AGTATGAAGCAACCTTCTCGG 57.747 47.619 5.21 0.00 46.13 4.63
399 400 5.289675 CACTAAGTATGAAGCAACCTTCTCG 59.710 44.000 5.21 0.00 46.13 4.04
400 401 6.398918 TCACTAAGTATGAAGCAACCTTCTC 58.601 40.000 5.21 0.00 46.13 2.87
401 402 6.360370 TCACTAAGTATGAAGCAACCTTCT 57.640 37.500 5.21 0.00 46.13 2.85
402 403 6.595716 ACATCACTAAGTATGAAGCAACCTTC 59.404 38.462 0.00 0.00 46.15 3.46
403 404 6.476378 ACATCACTAAGTATGAAGCAACCTT 58.524 36.000 0.00 0.00 0.00 3.50
404 405 6.054860 ACATCACTAAGTATGAAGCAACCT 57.945 37.500 0.00 0.00 0.00 3.50
405 406 8.438676 AATACATCACTAAGTATGAAGCAACC 57.561 34.615 0.00 0.00 31.68 3.77
447 448 8.076178 GCGACAGCCACTTTATTAATTATTCAT 58.924 33.333 0.00 0.00 37.42 2.57
448 449 7.414436 GCGACAGCCACTTTATTAATTATTCA 58.586 34.615 0.00 0.00 37.42 2.57
449 450 7.837898 GCGACAGCCACTTTATTAATTATTC 57.162 36.000 0.00 0.00 37.42 1.75
487 488 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
488 489 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
489 490 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
490 491 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
517 518 9.533253 CAGTGTGTTTTAATGAAAAGAGGAATT 57.467 29.630 0.00 0.00 35.21 2.17
518 519 8.912988 TCAGTGTGTTTTAATGAAAAGAGGAAT 58.087 29.630 0.00 0.00 35.21 3.01
519 520 8.188139 GTCAGTGTGTTTTAATGAAAAGAGGAA 58.812 33.333 0.00 0.00 35.21 3.36
520 521 7.556275 AGTCAGTGTGTTTTAATGAAAAGAGGA 59.444 33.333 0.00 0.00 35.21 3.71
521 522 7.707104 AGTCAGTGTGTTTTAATGAAAAGAGG 58.293 34.615 0.00 0.00 35.21 3.69
522 523 9.869844 CTAGTCAGTGTGTTTTAATGAAAAGAG 57.130 33.333 0.00 0.00 35.21 2.85
523 524 9.607988 TCTAGTCAGTGTGTTTTAATGAAAAGA 57.392 29.630 0.00 0.00 35.21 2.52
524 525 9.869844 CTCTAGTCAGTGTGTTTTAATGAAAAG 57.130 33.333 0.00 0.00 35.21 2.27
525 526 8.836413 CCTCTAGTCAGTGTGTTTTAATGAAAA 58.164 33.333 0.00 0.00 32.00 2.29
526 527 7.990886 ACCTCTAGTCAGTGTGTTTTAATGAAA 59.009 33.333 0.00 0.00 0.00 2.69
527 528 7.506114 ACCTCTAGTCAGTGTGTTTTAATGAA 58.494 34.615 0.00 0.00 0.00 2.57
528 529 7.062749 ACCTCTAGTCAGTGTGTTTTAATGA 57.937 36.000 0.00 0.00 0.00 2.57
529 530 7.545965 CCTACCTCTAGTCAGTGTGTTTTAATG 59.454 40.741 0.00 0.00 0.00 1.90
530 531 7.612677 CCTACCTCTAGTCAGTGTGTTTTAAT 58.387 38.462 0.00 0.00 0.00 1.40
531 532 6.517864 GCCTACCTCTAGTCAGTGTGTTTTAA 60.518 42.308 0.00 0.00 0.00 1.52
532 533 5.047519 GCCTACCTCTAGTCAGTGTGTTTTA 60.048 44.000 0.00 0.00 0.00 1.52
533 534 4.262506 GCCTACCTCTAGTCAGTGTGTTTT 60.263 45.833 0.00 0.00 0.00 2.43
534 535 3.258622 GCCTACCTCTAGTCAGTGTGTTT 59.741 47.826 0.00 0.00 0.00 2.83
538 539 1.682394 CCGCCTACCTCTAGTCAGTGT 60.682 57.143 0.00 0.00 0.00 3.55
545 546 3.747266 CGACCCGCCTACCTCTAG 58.253 66.667 0.00 0.00 0.00 2.43
650 654 7.230510 TCCATGTGTGCTAGTATTTGACTTTTT 59.769 33.333 0.00 0.00 39.81 1.94
667 671 8.871862 CAATAAATAACCAAACATCCATGTGTG 58.128 33.333 3.16 3.16 43.95 3.82
668 672 8.811017 TCAATAAATAACCAAACATCCATGTGT 58.189 29.630 0.00 0.00 41.61 3.72
682 686 6.593770 CCCTTTGTTGCCTTCAATAAATAACC 59.406 38.462 1.54 0.00 40.71 2.85
792 801 0.467106 TCTCGAGAGGGGATGCTGAG 60.467 60.000 12.08 0.00 0.00 3.35
928 940 1.459592 CTTCAAGTACACCCGAAAGCG 59.540 52.381 0.00 0.00 37.24 4.68
929 941 2.762745 TCTTCAAGTACACCCGAAAGC 58.237 47.619 0.00 0.00 0.00 3.51
930 942 5.753921 GGATATCTTCAAGTACACCCGAAAG 59.246 44.000 2.05 0.00 0.00 2.62
935 1007 7.339482 AGAAAAGGATATCTTCAAGTACACCC 58.661 38.462 2.05 0.00 33.94 4.61
951 1023 8.798975 TCCCACTATAATCTGTAGAAAAGGAT 57.201 34.615 0.00 0.00 0.00 3.24
961 1033 7.136822 TGTATTTGCTCCCACTATAATCTGT 57.863 36.000 0.00 0.00 0.00 3.41
1033 1122 0.961019 GTTGCACTTGGATCCTGCAA 59.039 50.000 27.31 27.31 46.15 4.08
1208 1300 7.339482 ACCTCTCTTCACTTCTTAAACAGTTT 58.661 34.615 3.49 3.49 0.00 2.66
1349 1449 1.559368 TTTGGTGCTTGATCCCCATG 58.441 50.000 0.00 0.00 0.00 3.66
1495 1600 5.016051 TGAGATGTAGTCATGAAGGCTTC 57.984 43.478 20.27 20.27 34.06 3.86
1506 1611 8.001881 TCTCTGATTTTACCTGAGATGTAGTC 57.998 38.462 0.00 0.00 34.92 2.59
1631 1767 3.425162 AACGGAAGAGCTCTCCAAAAT 57.575 42.857 18.55 0.00 0.00 1.82
1709 1845 4.941263 TGACTCCAAATTTAGCGCTATTGT 59.059 37.500 19.60 5.68 0.00 2.71
1741 1877 4.210724 TGGTTTTGTATAGCGGCTTAGT 57.789 40.909 8.26 0.00 0.00 2.24
1749 1885 8.451908 AAGGTAGAATGATGGTTTTGTATAGC 57.548 34.615 0.00 0.00 0.00 2.97
1844 1980 2.812011 ACATCAAAACCCGAGCACTAAC 59.188 45.455 0.00 0.00 0.00 2.34
1945 2319 8.026607 CCCTTTAGCGTTTTTCTTAATCATGAA 58.973 33.333 0.00 0.00 0.00 2.57
2027 2580 4.821177 CGGTCCCTAGCGTTTACC 57.179 61.111 0.00 0.00 41.60 2.85
2161 2788 3.072468 CGGCGGGGTTACCTCTCA 61.072 66.667 0.00 0.00 36.97 3.27
2317 2944 2.025981 TGTGGGCAACATATCTGAAGCT 60.026 45.455 0.00 0.00 32.36 3.74
2404 3051 8.857098 AGGAAATATGAACTCAATCAATGATGG 58.143 33.333 0.00 0.00 37.44 3.51
2451 3100 3.493699 CCACTCGAGGTCAAAAGTACCAA 60.494 47.826 18.41 0.00 39.64 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.