Multiple sequence alignment - TraesCS3B01G110000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G110000 chr3B 100.000 2735 0 0 1 2735 75959048 75956314 0.000000e+00 5051.0
1 TraesCS3B01G110000 chr3B 88.941 1908 124 43 577 2433 76114887 76116758 0.000000e+00 2274.0
2 TraesCS3B01G110000 chr3B 84.314 408 48 14 1 402 75993823 75994220 4.270000e-103 385.0
3 TraesCS3B01G110000 chr3A 89.370 2700 153 48 1 2604 60443771 60441110 0.000000e+00 3273.0
4 TraesCS3B01G110000 chr3A 90.657 1477 99 18 460 1921 60471201 60472653 0.000000e+00 1927.0
5 TraesCS3B01G110000 chr3A 93.654 520 26 3 1915 2431 60472678 60473193 0.000000e+00 771.0
6 TraesCS3B01G110000 chr3A 85.938 64 7 1 35 96 116644139 116644202 1.760000e-07 67.6
7 TraesCS3B01G110000 chr3D 90.483 2028 108 38 466 2431 48348355 48350359 0.000000e+00 2597.0
8 TraesCS3B01G110000 chr3D 91.038 1975 83 33 498 2393 48252569 48250610 0.000000e+00 2580.0
9 TraesCS3B01G110000 chr3D 89.216 408 37 2 1915 2318 48295756 48295352 1.130000e-138 503.0
10 TraesCS3B01G110000 chr3D 81.489 470 47 25 386 848 48283532 48283968 1.560000e-92 350.0
11 TraesCS3B01G110000 chr3D 85.393 267 32 5 2474 2733 48295115 48294849 1.250000e-68 270.0
12 TraesCS3B01G110000 chr3D 81.731 104 16 2 8 108 397207767 397207664 1.750000e-12 84.2
13 TraesCS3B01G110000 chr7B 79.050 821 144 22 898 1713 682283706 682282909 3.100000e-149 538.0
14 TraesCS3B01G110000 chr6A 79.050 821 144 22 898 1713 205114773 205115570 3.100000e-149 538.0
15 TraesCS3B01G110000 chr6B 76.127 821 146 43 898 1713 255211338 255210563 4.270000e-103 385.0
16 TraesCS3B01G110000 chr6B 89.062 64 5 1 35 96 447999536 447999599 8.120000e-11 78.7
17 TraesCS3B01G110000 chr6D 81.598 413 65 9 896 1307 142989963 142989561 5.650000e-87 331.0
18 TraesCS3B01G110000 chr1D 75.654 612 120 25 898 1500 337217326 337217917 7.460000e-71 278.0
19 TraesCS3B01G110000 chr5A 76.147 436 78 19 893 1318 520209662 520209243 3.570000e-49 206.0
20 TraesCS3B01G110000 chr5A 76.648 364 67 13 1917 2271 520208590 520208236 4.650000e-43 185.0
21 TraesCS3B01G110000 chr5A 94.872 39 2 0 35 73 595080848 595080886 8.180000e-06 62.1
22 TraesCS3B01G110000 chr5B 76.860 363 68 11 1917 2271 491083033 491082679 1.000000e-44 191.0
23 TraesCS3B01G110000 chrUn 72.857 350 83 11 1923 2266 24901500 24901843 2.880000e-20 110.0
24 TraesCS3B01G110000 chr7A 76.263 198 31 11 35 227 671924321 671924507 1.040000e-14 91.6
25 TraesCS3B01G110000 chr5D 76.974 152 30 5 2047 2197 380076340 380076193 6.280000e-12 82.4
26 TraesCS3B01G110000 chr5D 85.714 77 8 3 35 109 494792391 494792466 8.120000e-11 78.7
27 TraesCS3B01G110000 chr2D 87.500 64 6 2 35 96 368651340 368651277 3.780000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G110000 chr3B 75956314 75959048 2734 True 5051.0 5051 100.0000 1 2735 1 chr3B.!!$R1 2734
1 TraesCS3B01G110000 chr3B 76114887 76116758 1871 False 2274.0 2274 88.9410 577 2433 1 chr3B.!!$F2 1856
2 TraesCS3B01G110000 chr3A 60441110 60443771 2661 True 3273.0 3273 89.3700 1 2604 1 chr3A.!!$R1 2603
3 TraesCS3B01G110000 chr3A 60471201 60473193 1992 False 1349.0 1927 92.1555 460 2431 2 chr3A.!!$F2 1971
4 TraesCS3B01G110000 chr3D 48348355 48350359 2004 False 2597.0 2597 90.4830 466 2431 1 chr3D.!!$F2 1965
5 TraesCS3B01G110000 chr3D 48250610 48252569 1959 True 2580.0 2580 91.0380 498 2393 1 chr3D.!!$R1 1895
6 TraesCS3B01G110000 chr3D 48294849 48295756 907 True 386.5 503 87.3045 1915 2733 2 chr3D.!!$R3 818
7 TraesCS3B01G110000 chr7B 682282909 682283706 797 True 538.0 538 79.0500 898 1713 1 chr7B.!!$R1 815
8 TraesCS3B01G110000 chr6A 205114773 205115570 797 False 538.0 538 79.0500 898 1713 1 chr6A.!!$F1 815
9 TraesCS3B01G110000 chr6B 255210563 255211338 775 True 385.0 385 76.1270 898 1713 1 chr6B.!!$R1 815
10 TraesCS3B01G110000 chr1D 337217326 337217917 591 False 278.0 278 75.6540 898 1500 1 chr1D.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 698 0.327259 AGCCAAGATGAGAGCAGCAA 59.673 50.0 0.0 0.0 31.43 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1811 0.030908 GACGCCTTTCGATCGAGGAT 59.969 55.0 23.49 12.44 41.67 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 59 2.706190 CCTAGAGGTAAATGGAGGGTGG 59.294 54.545 0.00 0.00 0.00 4.61
154 160 2.275134 TGTGGATGACTTGCATGTGT 57.725 45.000 10.37 0.00 37.34 3.72
174 188 4.097892 GTGTTTGATGGTGTGGAGAACTTT 59.902 41.667 0.00 0.00 0.00 2.66
175 189 4.097741 TGTTTGATGGTGTGGAGAACTTTG 59.902 41.667 0.00 0.00 0.00 2.77
176 190 3.576078 TGATGGTGTGGAGAACTTTGT 57.424 42.857 0.00 0.00 0.00 2.83
198 212 3.304911 TGTGGTGAAAAGTGGATTGGA 57.695 42.857 0.00 0.00 0.00 3.53
206 220 1.855295 AAGTGGATTGGATGCATGCA 58.145 45.000 25.04 25.04 31.75 3.96
221 235 2.479049 GCATGCACTTGATGATGTGGAC 60.479 50.000 14.21 0.00 37.35 4.02
231 245 2.309528 TGATGTGGACGGCTTATGAC 57.690 50.000 0.00 0.00 0.00 3.06
312 326 1.059942 GCCACAACTAAATGCAACGC 58.940 50.000 0.00 0.00 0.00 4.84
320 334 5.172411 ACAACTAAATGCAACGCGTTTTAAG 59.828 36.000 24.21 12.44 44.02 1.85
324 338 5.898630 AAATGCAACGCGTTTTAAGAATT 57.101 30.435 24.21 14.33 44.02 2.17
326 340 3.953766 TGCAACGCGTTTTAAGAATTCA 58.046 36.364 24.21 6.20 0.00 2.57
333 347 7.181143 ACGCGTTTTAAGAATTCACTTAGAA 57.819 32.000 5.58 0.00 41.28 2.10
335 349 7.744715 ACGCGTTTTAAGAATTCACTTAGAATG 59.255 33.333 5.58 6.84 46.09 2.67
337 351 7.537306 GCGTTTTAAGAATTCACTTAGAATGCA 59.463 33.333 19.46 0.00 46.56 3.96
345 359 8.671921 AGAATTCACTTAGAATGCACTAATGTG 58.328 33.333 8.44 14.03 46.09 3.21
347 361 7.744087 TTCACTTAGAATGCACTAATGTGTT 57.256 32.000 16.79 0.00 45.44 3.32
348 362 8.840833 TTCACTTAGAATGCACTAATGTGTTA 57.159 30.769 16.79 9.97 45.44 2.41
390 406 2.293677 CGTAGATTGGACGGATGCTAGT 59.706 50.000 0.00 0.00 36.66 2.57
401 417 5.339008 ACGGATGCTAGTGAATCAAGTTA 57.661 39.130 0.00 0.00 29.57 2.24
450 466 5.588246 TGATGATGTAAAACCATGCGTATGT 59.412 36.000 12.66 0.00 32.21 2.29
452 468 7.443879 TGATGATGTAAAACCATGCGTATGTAT 59.556 33.333 12.66 0.00 32.21 2.29
455 471 8.716909 TGATGTAAAACCATGCGTATGTATATG 58.283 33.333 12.66 0.00 32.21 1.78
456 472 6.893759 TGTAAAACCATGCGTATGTATATGC 58.106 36.000 12.66 8.74 43.75 3.14
505 533 2.094494 AGTATCTGGTTGTGAGCTGTCG 60.094 50.000 0.00 0.00 0.00 4.35
636 676 1.801512 GCAAACAAATCGCTCCGGC 60.802 57.895 0.00 0.00 0.00 6.13
655 695 1.429927 CGCAGCCAAGATGAGAGCAG 61.430 60.000 0.00 0.00 0.00 4.24
656 696 1.716826 GCAGCCAAGATGAGAGCAGC 61.717 60.000 0.00 0.00 0.00 5.25
658 698 0.327259 AGCCAAGATGAGAGCAGCAA 59.673 50.000 0.00 0.00 31.43 3.91
659 699 0.733729 GCCAAGATGAGAGCAGCAAG 59.266 55.000 0.00 0.00 31.43 4.01
661 701 2.920524 CCAAGATGAGAGCAGCAAGAT 58.079 47.619 0.00 0.00 31.43 2.40
662 702 2.873472 CCAAGATGAGAGCAGCAAGATC 59.127 50.000 0.00 0.00 31.43 2.75
710 758 5.822132 ATATCCAAACCTCCTCATGAGAG 57.178 43.478 24.62 17.48 44.42 3.20
715 763 5.907662 TCCAAACCTCCTCATGAGAGAATAT 59.092 40.000 24.62 3.38 44.98 1.28
721 769 6.896860 ACCTCCTCATGAGAGAATATATCAGG 59.103 42.308 24.62 14.61 44.98 3.86
723 771 6.200852 TCCTCATGAGAGAATATATCAGGGG 58.799 44.000 24.62 2.19 44.98 4.79
739 787 1.081242 GGGACGACGTACGCTTGAA 60.081 57.895 16.72 0.00 46.94 2.69
743 791 2.442188 CGACGTACGCTTGAAGCCC 61.442 63.158 16.72 0.00 38.18 5.19
806 858 0.547075 TACTACTCGCTCCTCCTGCT 59.453 55.000 0.00 0.00 0.00 4.24
810 862 0.902516 ACTCGCTCCTCCTGCTTCTT 60.903 55.000 0.00 0.00 0.00 2.52
829 881 4.401022 TCTTCTTCTGGTCGTGGTAACTA 58.599 43.478 0.00 0.00 37.61 2.24
843 895 3.054434 TGGTAACTACGCTCTACCTGGTA 60.054 47.826 6.36 6.36 36.76 3.25
1323 1375 2.874664 CGTGAACTTGACCCGGGGA 61.875 63.158 27.92 8.15 0.00 4.81
1422 1474 3.399181 CTGCTGCGGGAGGGGTTA 61.399 66.667 6.08 0.00 0.00 2.85
1584 1636 2.354503 GGACAAGAAGAGATCAGCAGCA 60.355 50.000 0.00 0.00 0.00 4.41
1744 1811 4.998672 CCGATCCTGTTTAGTGTTTACCAA 59.001 41.667 0.00 0.00 0.00 3.67
2445 2659 1.135546 TGTTTGTGCTTTGTGGTGACG 60.136 47.619 0.00 0.00 0.00 4.35
2453 2667 1.455786 CTTTGTGGTGACGATCGTGAC 59.544 52.381 28.12 27.38 0.00 3.67
2454 2668 0.671796 TTGTGGTGACGATCGTGACT 59.328 50.000 31.54 6.74 32.89 3.41
2455 2669 1.525941 TGTGGTGACGATCGTGACTA 58.474 50.000 31.54 25.81 32.89 2.59
2456 2670 1.198408 TGTGGTGACGATCGTGACTAC 59.802 52.381 35.09 35.09 42.07 2.73
2457 2671 1.198408 GTGGTGACGATCGTGACTACA 59.802 52.381 36.07 24.67 41.57 2.74
2458 2672 1.881324 TGGTGACGATCGTGACTACAA 59.119 47.619 31.54 15.77 32.89 2.41
2459 2673 2.293955 TGGTGACGATCGTGACTACAAA 59.706 45.455 31.54 13.64 32.89 2.83
2460 2674 3.243468 TGGTGACGATCGTGACTACAAAA 60.243 43.478 31.54 12.13 32.89 2.44
2461 2675 3.120782 GGTGACGATCGTGACTACAAAAC 59.879 47.826 31.54 13.66 32.89 2.43
2462 2676 3.120782 GTGACGATCGTGACTACAAAACC 59.879 47.826 27.31 9.11 29.75 3.27
2464 2678 3.314553 ACGATCGTGACTACAAAACCTG 58.685 45.455 22.06 0.00 0.00 4.00
2466 2680 4.022935 ACGATCGTGACTACAAAACCTGTA 60.023 41.667 22.06 0.00 39.64 2.74
2467 2681 4.322804 CGATCGTGACTACAAAACCTGTAC 59.677 45.833 7.03 0.00 39.64 2.90
2468 2682 4.924305 TCGTGACTACAAAACCTGTACT 57.076 40.909 0.00 0.00 39.64 2.73
2504 2729 2.028748 TCTTGGCTACCGTTGTAAGGAC 60.029 50.000 0.00 0.00 0.00 3.85
2527 2753 5.523552 ACCTGCAGTTTTATTTTGCTGTTTC 59.476 36.000 13.81 0.00 38.60 2.78
2612 2840 4.779993 GGAGGTTCCCTAAGACAATGAT 57.220 45.455 0.00 0.00 31.76 2.45
2617 2845 4.571176 GGTTCCCTAAGACAATGATCGAAC 59.429 45.833 0.00 0.00 0.00 3.95
2618 2846 5.420409 GTTCCCTAAGACAATGATCGAACT 58.580 41.667 0.00 0.00 0.00 3.01
2623 2851 3.340814 AGACAATGATCGAACTTGGCT 57.659 42.857 7.34 7.34 33.39 4.75
2662 2893 7.907214 TCCTCAGAATTACAAGCTAAAAGAC 57.093 36.000 0.00 0.00 0.00 3.01
2666 2897 2.867456 TTACAAGCTAAAAGACGCGC 57.133 45.000 5.73 0.00 0.00 6.86
2676 2907 3.889196 AAAAGACGCGCAACTTGATTA 57.111 38.095 5.73 0.00 0.00 1.75
2693 2924 7.406104 ACTTGATTAGCTTCCCTAAGACAATT 58.594 34.615 0.00 0.00 39.29 2.32
2694 2925 7.337942 ACTTGATTAGCTTCCCTAAGACAATTG 59.662 37.037 3.24 3.24 39.29 2.32
2726 2957 9.645059 TTTGACATTGACAAAAACTTGACATAA 57.355 25.926 11.04 0.00 34.89 1.90
2733 2964 8.696410 TGACAAAAACTTGACATAAAAAGGAC 57.304 30.769 0.00 0.00 0.00 3.85
2734 2965 7.762159 TGACAAAAACTTGACATAAAAAGGACC 59.238 33.333 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.870411 GTTTCTACGGCCATATGGTGAC 59.130 50.000 22.79 12.44 37.57 3.67
118 120 8.719648 GTCATCCACATCATTATTTTGCAAAAA 58.280 29.630 27.10 13.34 0.00 1.94
119 121 8.095792 AGTCATCCACATCATTATTTTGCAAAA 58.904 29.630 25.76 25.76 0.00 2.44
120 122 7.613585 AGTCATCCACATCATTATTTTGCAAA 58.386 30.769 8.05 8.05 0.00 3.68
121 123 7.172868 AGTCATCCACATCATTATTTTGCAA 57.827 32.000 0.00 0.00 0.00 4.08
137 143 3.220940 TCAAACACATGCAAGTCATCCA 58.779 40.909 0.00 0.00 31.79 3.41
154 160 4.277476 ACAAAGTTCTCCACACCATCAAA 58.723 39.130 0.00 0.00 0.00 2.69
174 188 4.522405 CCAATCCACTTTTCACCACATACA 59.478 41.667 0.00 0.00 0.00 2.29
175 189 4.764823 TCCAATCCACTTTTCACCACATAC 59.235 41.667 0.00 0.00 0.00 2.39
176 190 4.991776 TCCAATCCACTTTTCACCACATA 58.008 39.130 0.00 0.00 0.00 2.29
198 212 2.100749 CCACATCATCAAGTGCATGCAT 59.899 45.455 25.64 5.67 34.48 3.96
206 220 0.615331 AGCCGTCCACATCATCAAGT 59.385 50.000 0.00 0.00 0.00 3.16
221 235 5.236478 CCCACATAGTTTAAGTCATAAGCCG 59.764 44.000 0.00 0.00 0.00 5.52
312 326 8.840867 GTGCATTCTAAGTGAATTCTTAAAACG 58.159 33.333 7.05 0.00 43.00 3.60
320 334 8.832487 CACATTAGTGCATTCTAAGTGAATTC 57.168 34.615 14.55 0.00 39.41 2.17
337 351 9.547753 GAATCATCTACCATGTAACACATTAGT 57.452 33.333 0.00 0.00 36.53 2.24
422 438 5.633182 ACGCATGGTTTTACATCATCAAAAC 59.367 36.000 0.00 0.00 41.67 2.43
442 458 9.736023 CTAATCTTATCTGCATATACATACGCA 57.264 33.333 0.00 0.00 0.00 5.24
450 466 8.409371 CGCTCCTTCTAATCTTATCTGCATATA 58.591 37.037 0.00 0.00 0.00 0.86
452 468 6.350528 CCGCTCCTTCTAATCTTATCTGCATA 60.351 42.308 0.00 0.00 0.00 3.14
455 471 4.241681 CCGCTCCTTCTAATCTTATCTGC 58.758 47.826 0.00 0.00 0.00 4.26
456 472 4.322349 CCCCGCTCCTTCTAATCTTATCTG 60.322 50.000 0.00 0.00 0.00 2.90
457 473 3.835395 CCCCGCTCCTTCTAATCTTATCT 59.165 47.826 0.00 0.00 0.00 1.98
458 474 3.579151 ACCCCGCTCCTTCTAATCTTATC 59.421 47.826 0.00 0.00 0.00 1.75
459 475 3.579151 GACCCCGCTCCTTCTAATCTTAT 59.421 47.826 0.00 0.00 0.00 1.73
460 476 2.963782 GACCCCGCTCCTTCTAATCTTA 59.036 50.000 0.00 0.00 0.00 2.10
462 478 1.415200 GACCCCGCTCCTTCTAATCT 58.585 55.000 0.00 0.00 0.00 2.40
505 533 0.732880 CTGCATGCACAGCTTGAAGC 60.733 55.000 18.46 9.59 42.84 3.86
532 561 1.531264 CGTCACCTCCTACGACATTCG 60.531 57.143 0.00 0.00 46.93 3.34
534 563 0.815734 CCGTCACCTCCTACGACATT 59.184 55.000 0.00 0.00 41.55 2.71
636 676 1.429927 CTGCTCTCATCTTGGCTGCG 61.430 60.000 0.00 0.00 0.00 5.18
650 690 3.249986 AGAGTCTTGATCTTGCTGCTC 57.750 47.619 0.00 0.00 0.00 4.26
651 691 3.428725 CGTAGAGTCTTGATCTTGCTGCT 60.429 47.826 0.00 0.00 0.00 4.24
652 692 2.857152 CGTAGAGTCTTGATCTTGCTGC 59.143 50.000 0.00 0.00 0.00 5.25
655 695 2.881074 TGCGTAGAGTCTTGATCTTGC 58.119 47.619 0.00 0.00 0.00 4.01
656 696 3.862267 CCTTGCGTAGAGTCTTGATCTTG 59.138 47.826 0.00 0.00 0.00 3.02
658 698 2.159170 GCCTTGCGTAGAGTCTTGATCT 60.159 50.000 0.00 0.00 0.00 2.75
659 699 2.197577 GCCTTGCGTAGAGTCTTGATC 58.802 52.381 0.00 0.00 0.00 2.92
661 701 0.246635 GGCCTTGCGTAGAGTCTTGA 59.753 55.000 0.00 0.00 0.00 3.02
662 702 0.037326 TGGCCTTGCGTAGAGTCTTG 60.037 55.000 3.32 0.00 0.00 3.02
710 758 4.436584 CGTACGTCGTCCCCTGATATATTC 60.437 50.000 7.22 0.00 34.52 1.75
715 763 1.439353 GCGTACGTCGTCCCCTGATA 61.439 60.000 17.90 0.00 42.13 2.15
721 769 1.069378 CTTCAAGCGTACGTCGTCCC 61.069 60.000 17.90 0.00 42.13 4.46
723 771 1.671880 GGCTTCAAGCGTACGTCGTC 61.672 60.000 17.90 0.00 43.62 4.20
739 787 0.326264 AACTTTGAGCTCGATGGGCT 59.674 50.000 18.47 0.00 43.26 5.19
743 791 1.927174 CCGGTAACTTTGAGCTCGATG 59.073 52.381 9.64 12.13 0.00 3.84
806 858 3.640029 AGTTACCACGACCAGAAGAAGAA 59.360 43.478 0.00 0.00 0.00 2.52
810 862 2.485426 CGTAGTTACCACGACCAGAAGA 59.515 50.000 0.00 0.00 41.91 2.87
829 881 0.752376 GCTCCTACCAGGTAGAGCGT 60.752 60.000 26.32 0.00 38.29 5.07
877 929 3.961729 CGGAGGAAACCGTTGTCC 58.038 61.111 0.00 5.00 46.70 4.02
1323 1375 2.484203 GCGACGAACGAGGCTAGT 59.516 61.111 0.00 0.00 45.77 2.57
1744 1811 0.030908 GACGCCTTTCGATCGAGGAT 59.969 55.000 23.49 12.44 41.67 3.24
1793 1883 0.108851 TCGCTGCTCGCACTAATCAA 60.109 50.000 0.00 0.00 39.08 2.57
2335 2462 2.280797 GCGAACACCACCAGCTCA 60.281 61.111 0.00 0.00 0.00 4.26
2341 2468 2.668550 GGGACAGCGAACACCACC 60.669 66.667 0.00 0.00 0.00 4.61
2431 2637 0.249699 ACGATCGTCACCACAAAGCA 60.250 50.000 16.60 0.00 0.00 3.91
2432 2638 0.163788 CACGATCGTCACCACAAAGC 59.836 55.000 19.84 0.00 0.00 3.51
2445 2659 5.467705 AGTACAGGTTTTGTAGTCACGATC 58.532 41.667 0.00 0.00 41.09 3.69
2504 2729 5.754890 AGAAACAGCAAAATAAAACTGCAGG 59.245 36.000 19.93 0.00 38.58 4.85
2552 2780 8.834465 AGCACAGTTAGCAATTCTTCATAATAG 58.166 33.333 0.00 0.00 0.00 1.73
2638 2866 6.590292 CGTCTTTTAGCTTGTAATTCTGAGGA 59.410 38.462 0.00 0.00 0.00 3.71
2639 2867 6.673316 GCGTCTTTTAGCTTGTAATTCTGAGG 60.673 42.308 0.00 0.00 0.00 3.86
2659 2890 0.721718 GCTAATCAAGTTGCGCGTCT 59.278 50.000 8.43 0.00 0.00 4.18
2662 2893 1.529826 GGAAGCTAATCAAGTTGCGCG 60.530 52.381 0.00 0.00 0.00 6.86
2666 2897 6.173339 TGTCTTAGGGAAGCTAATCAAGTTG 58.827 40.000 0.00 0.00 32.21 3.16
2676 2907 4.640771 TGACAATTGTCTTAGGGAAGCT 57.359 40.909 32.57 0.00 44.99 3.74
2697 2928 8.997323 TGTCAAGTTTTTGTCAATGTCAAATTT 58.003 25.926 6.50 0.91 35.25 1.82
2701 2932 9.645059 TTTATGTCAAGTTTTTGTCAATGTCAA 57.355 25.926 0.00 0.00 36.27 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.