AutoCloner

Multiple sequence alignment - TraesCS3B01G110000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G110000	chr3B	100.000	2735	0	0	1	2735	75959048	75956314	0.000000e+00	5051.0
1	TraesCS3B01G110000	chr3B	88.941	1908	124	43	577	2433	76114887	76116758	0.000000e+00	2274.0
2	TraesCS3B01G110000	chr3B	84.314	408	48	14	1	402	75993823	75994220	4.270000e-103	385.0
3	TraesCS3B01G110000	chr3A	89.370	2700	153	48	1	2604	60443771	60441110	0.000000e+00	3273.0
4	TraesCS3B01G110000	chr3A	90.657	1477	99	18	460	1921	60471201	60472653	0.000000e+00	1927.0
5	TraesCS3B01G110000	chr3A	93.654	520	26	3	1915	2431	60472678	60473193	0.000000e+00	771.0
6	TraesCS3B01G110000	chr3A	85.938	64	7	1	35	96	116644139	116644202	1.760000e-07	67.6
7	TraesCS3B01G110000	chr3D	90.483	2028	108	38	466	2431	48348355	48350359	0.000000e+00	2597.0
8	TraesCS3B01G110000	chr3D	91.038	1975	83	33	498	2393	48252569	48250610	0.000000e+00	2580.0
9	TraesCS3B01G110000	chr3D	89.216	408	37	2	1915	2318	48295756	48295352	1.130000e-138	503.0
10	TraesCS3B01G110000	chr3D	81.489	470	47	25	386	848	48283532	48283968	1.560000e-92	350.0
11	TraesCS3B01G110000	chr3D	85.393	267	32	5	2474	2733	48295115	48294849	1.250000e-68	270.0
12	TraesCS3B01G110000	chr3D	81.731	104	16	2	8	108	397207767	397207664	1.750000e-12	84.2
13	TraesCS3B01G110000	chr7B	79.050	821	144	22	898	1713	682283706	682282909	3.100000e-149	538.0
14	TraesCS3B01G110000	chr6A	79.050	821	144	22	898	1713	205114773	205115570	3.100000e-149	538.0
15	TraesCS3B01G110000	chr6B	76.127	821	146	43	898	1713	255211338	255210563	4.270000e-103	385.0
16	TraesCS3B01G110000	chr6B	89.062	64	5	1	35	96	447999536	447999599	8.120000e-11	78.7
17	TraesCS3B01G110000	chr6D	81.598	413	65	9	896	1307	142989963	142989561	5.650000e-87	331.0
18	TraesCS3B01G110000	chr1D	75.654	612	120	25	898	1500	337217326	337217917	7.460000e-71	278.0
19	TraesCS3B01G110000	chr5A	76.147	436	78	19	893	1318	520209662	520209243	3.570000e-49	206.0
20	TraesCS3B01G110000	chr5A	76.648	364	67	13	1917	2271	520208590	520208236	4.650000e-43	185.0
21	TraesCS3B01G110000	chr5A	94.872	39	2	0	35	73	595080848	595080886	8.180000e-06	62.1
22	TraesCS3B01G110000	chr5B	76.860	363	68	11	1917	2271	491083033	491082679	1.000000e-44	191.0
23	TraesCS3B01G110000	chrUn	72.857	350	83	11	1923	2266	24901500	24901843	2.880000e-20	110.0
24	TraesCS3B01G110000	chr7A	76.263	198	31	11	35	227	671924321	671924507	1.040000e-14	91.6
25	TraesCS3B01G110000	chr5D	76.974	152	30	5	2047	2197	380076340	380076193	6.280000e-12	82.4
26	TraesCS3B01G110000	chr5D	85.714	77	8	3	35	109	494792391	494792466	8.120000e-11	78.7
27	TraesCS3B01G110000	chr2D	87.500	64	6	2	35	96	368651340	368651277	3.780000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G110000	chr3B	75956314	75959048	2734	True	5051.0	5051	100.0000	1	2735	1	chr3B.!!$R1	2734
1	TraesCS3B01G110000	chr3B	76114887	76116758	1871	False	2274.0	2274	88.9410	577	2433	1	chr3B.!!$F2	1856
2	TraesCS3B01G110000	chr3A	60441110	60443771	2661	True	3273.0	3273	89.3700	1	2604	1	chr3A.!!$R1	2603
3	TraesCS3B01G110000	chr3A	60471201	60473193	1992	False	1349.0	1927	92.1555	460	2431	2	chr3A.!!$F2	1971
4	TraesCS3B01G110000	chr3D	48348355	48350359	2004	False	2597.0	2597	90.4830	466	2431	1	chr3D.!!$F2	1965
5	TraesCS3B01G110000	chr3D	48250610	48252569	1959	True	2580.0	2580	91.0380	498	2393	1	chr3D.!!$R1	1895
6	TraesCS3B01G110000	chr3D	48294849	48295756	907	True	386.5	503	87.3045	1915	2733	2	chr3D.!!$R3	818
7	TraesCS3B01G110000	chr7B	682282909	682283706	797	True	538.0	538	79.0500	898	1713	1	chr7B.!!$R1	815
8	TraesCS3B01G110000	chr6A	205114773	205115570	797	False	538.0	538	79.0500	898	1713	1	chr6A.!!$F1	815
9	TraesCS3B01G110000	chr6B	255210563	255211338	775	True	385.0	385	76.1270	898	1713	1	chr6B.!!$R1	815
10	TraesCS3B01G110000	chr1D	337217326	337217917	591	False	278.0	278	75.6540	898	1500	1	chr1D.!!$F1	602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
658	698	0.327259	AGCCAAGATGAGAGCAGCAA	59.673	50.0	0.0	0.0	31.43	3.91	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1744	1811	0.030908	GACGCCTTTCGATCGAGGAT	59.969	55.0	23.49	12.44	41.67	3.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
57	59	2.706190	CCTAGAGGTAAATGGAGGGTGG	59.294	54.545	0.00	0.00	0.00	4.61
154	160	2.275134	TGTGGATGACTTGCATGTGT	57.725	45.000	10.37	0.00	37.34	3.72
174	188	4.097892	GTGTTTGATGGTGTGGAGAACTTT	59.902	41.667	0.00	0.00	0.00	2.66
175	189	4.097741	TGTTTGATGGTGTGGAGAACTTTG	59.902	41.667	0.00	0.00	0.00	2.77
176	190	3.576078	TGATGGTGTGGAGAACTTTGT	57.424	42.857	0.00	0.00	0.00	2.83
198	212	3.304911	TGTGGTGAAAAGTGGATTGGA	57.695	42.857	0.00	0.00	0.00	3.53
206	220	1.855295	AAGTGGATTGGATGCATGCA	58.145	45.000	25.04	25.04	31.75	3.96
221	235	2.479049	GCATGCACTTGATGATGTGGAC	60.479	50.000	14.21	0.00	37.35	4.02
231	245	2.309528	TGATGTGGACGGCTTATGAC	57.690	50.000	0.00	0.00	0.00	3.06
312	326	1.059942	GCCACAACTAAATGCAACGC	58.940	50.000	0.00	0.00	0.00	4.84
320	334	5.172411	ACAACTAAATGCAACGCGTTTTAAG	59.828	36.000	24.21	12.44	44.02	1.85
324	338	5.898630	AAATGCAACGCGTTTTAAGAATT	57.101	30.435	24.21	14.33	44.02	2.17
326	340	3.953766	TGCAACGCGTTTTAAGAATTCA	58.046	36.364	24.21	6.20	0.00	2.57
333	347	7.181143	ACGCGTTTTAAGAATTCACTTAGAA	57.819	32.000	5.58	0.00	41.28	2.10
335	349	7.744715	ACGCGTTTTAAGAATTCACTTAGAATG	59.255	33.333	5.58	6.84	46.09	2.67
337	351	7.537306	GCGTTTTAAGAATTCACTTAGAATGCA	59.463	33.333	19.46	0.00	46.56	3.96
345	359	8.671921	AGAATTCACTTAGAATGCACTAATGTG	58.328	33.333	8.44	14.03	46.09	3.21
347	361	7.744087	TTCACTTAGAATGCACTAATGTGTT	57.256	32.000	16.79	0.00	45.44	3.32
348	362	8.840833	TTCACTTAGAATGCACTAATGTGTTA	57.159	30.769	16.79	9.97	45.44	2.41
390	406	2.293677	CGTAGATTGGACGGATGCTAGT	59.706	50.000	0.00	0.00	36.66	2.57
401	417	5.339008	ACGGATGCTAGTGAATCAAGTTA	57.661	39.130	0.00	0.00	29.57	2.24
450	466	5.588246	TGATGATGTAAAACCATGCGTATGT	59.412	36.000	12.66	0.00	32.21	2.29
452	468	7.443879	TGATGATGTAAAACCATGCGTATGTAT	59.556	33.333	12.66	0.00	32.21	2.29
455	471	8.716909	TGATGTAAAACCATGCGTATGTATATG	58.283	33.333	12.66	0.00	32.21	1.78
456	472	6.893759	TGTAAAACCATGCGTATGTATATGC	58.106	36.000	12.66	8.74	43.75	3.14
505	533	2.094494	AGTATCTGGTTGTGAGCTGTCG	60.094	50.000	0.00	0.00	0.00	4.35
636	676	1.801512	GCAAACAAATCGCTCCGGC	60.802	57.895	0.00	0.00	0.00	6.13
655	695	1.429927	CGCAGCCAAGATGAGAGCAG	61.430	60.000	0.00	0.00	0.00	4.24
656	696	1.716826	GCAGCCAAGATGAGAGCAGC	61.717	60.000	0.00	0.00	0.00	5.25
658	698	0.327259	AGCCAAGATGAGAGCAGCAA	59.673	50.000	0.00	0.00	31.43	3.91
659	699	0.733729	GCCAAGATGAGAGCAGCAAG	59.266	55.000	0.00	0.00	31.43	4.01
661	701	2.920524	CCAAGATGAGAGCAGCAAGAT	58.079	47.619	0.00	0.00	31.43	2.40
662	702	2.873472	CCAAGATGAGAGCAGCAAGATC	59.127	50.000	0.00	0.00	31.43	2.75
710	758	5.822132	ATATCCAAACCTCCTCATGAGAG	57.178	43.478	24.62	17.48	44.42	3.20
715	763	5.907662	TCCAAACCTCCTCATGAGAGAATAT	59.092	40.000	24.62	3.38	44.98	1.28
721	769	6.896860	ACCTCCTCATGAGAGAATATATCAGG	59.103	42.308	24.62	14.61	44.98	3.86
723	771	6.200852	TCCTCATGAGAGAATATATCAGGGG	58.799	44.000	24.62	2.19	44.98	4.79
739	787	1.081242	GGGACGACGTACGCTTGAA	60.081	57.895	16.72	0.00	46.94	2.69
743	791	2.442188	CGACGTACGCTTGAAGCCC	61.442	63.158	16.72	0.00	38.18	5.19
806	858	0.547075	TACTACTCGCTCCTCCTGCT	59.453	55.000	0.00	0.00	0.00	4.24
810	862	0.902516	ACTCGCTCCTCCTGCTTCTT	60.903	55.000	0.00	0.00	0.00	2.52
829	881	4.401022	TCTTCTTCTGGTCGTGGTAACTA	58.599	43.478	0.00	0.00	37.61	2.24
843	895	3.054434	TGGTAACTACGCTCTACCTGGTA	60.054	47.826	6.36	6.36	36.76	3.25
1323	1375	2.874664	CGTGAACTTGACCCGGGGA	61.875	63.158	27.92	8.15	0.00	4.81
1422	1474	3.399181	CTGCTGCGGGAGGGGTTA	61.399	66.667	6.08	0.00	0.00	2.85
1584	1636	2.354503	GGACAAGAAGAGATCAGCAGCA	60.355	50.000	0.00	0.00	0.00	4.41
1744	1811	4.998672	CCGATCCTGTTTAGTGTTTACCAA	59.001	41.667	0.00	0.00	0.00	3.67
2445	2659	1.135546	TGTTTGTGCTTTGTGGTGACG	60.136	47.619	0.00	0.00	0.00	4.35
2453	2667	1.455786	CTTTGTGGTGACGATCGTGAC	59.544	52.381	28.12	27.38	0.00	3.67
2454	2668	0.671796	TTGTGGTGACGATCGTGACT	59.328	50.000	31.54	6.74	32.89	3.41
2455	2669	1.525941	TGTGGTGACGATCGTGACTA	58.474	50.000	31.54	25.81	32.89	2.59
2456	2670	1.198408	TGTGGTGACGATCGTGACTAC	59.802	52.381	35.09	35.09	42.07	2.73
2457	2671	1.198408	GTGGTGACGATCGTGACTACA	59.802	52.381	36.07	24.67	41.57	2.74
2458	2672	1.881324	TGGTGACGATCGTGACTACAA	59.119	47.619	31.54	15.77	32.89	2.41
2459	2673	2.293955	TGGTGACGATCGTGACTACAAA	59.706	45.455	31.54	13.64	32.89	2.83
2460	2674	3.243468	TGGTGACGATCGTGACTACAAAA	60.243	43.478	31.54	12.13	32.89	2.44
2461	2675	3.120782	GGTGACGATCGTGACTACAAAAC	59.879	47.826	31.54	13.66	32.89	2.43
2462	2676	3.120782	GTGACGATCGTGACTACAAAACC	59.879	47.826	27.31	9.11	29.75	3.27
2464	2678	3.314553	ACGATCGTGACTACAAAACCTG	58.685	45.455	22.06	0.00	0.00	4.00
2466	2680	4.022935	ACGATCGTGACTACAAAACCTGTA	60.023	41.667	22.06	0.00	39.64	2.74
2467	2681	4.322804	CGATCGTGACTACAAAACCTGTAC	59.677	45.833	7.03	0.00	39.64	2.90
2468	2682	4.924305	TCGTGACTACAAAACCTGTACT	57.076	40.909	0.00	0.00	39.64	2.73
2504	2729	2.028748	TCTTGGCTACCGTTGTAAGGAC	60.029	50.000	0.00	0.00	0.00	3.85
2527	2753	5.523552	ACCTGCAGTTTTATTTTGCTGTTTC	59.476	36.000	13.81	0.00	38.60	2.78
2612	2840	4.779993	GGAGGTTCCCTAAGACAATGAT	57.220	45.455	0.00	0.00	31.76	2.45
2617	2845	4.571176	GGTTCCCTAAGACAATGATCGAAC	59.429	45.833	0.00	0.00	0.00	3.95
2618	2846	5.420409	GTTCCCTAAGACAATGATCGAACT	58.580	41.667	0.00	0.00	0.00	3.01
2623	2851	3.340814	AGACAATGATCGAACTTGGCT	57.659	42.857	7.34	7.34	33.39	4.75
2662	2893	7.907214	TCCTCAGAATTACAAGCTAAAAGAC	57.093	36.000	0.00	0.00	0.00	3.01
2666	2897	2.867456	TTACAAGCTAAAAGACGCGC	57.133	45.000	5.73	0.00	0.00	6.86
2676	2907	3.889196	AAAAGACGCGCAACTTGATTA	57.111	38.095	5.73	0.00	0.00	1.75
2693	2924	7.406104	ACTTGATTAGCTTCCCTAAGACAATT	58.594	34.615	0.00	0.00	39.29	2.32
2694	2925	7.337942	ACTTGATTAGCTTCCCTAAGACAATTG	59.662	37.037	3.24	3.24	39.29	2.32
2726	2957	9.645059	TTTGACATTGACAAAAACTTGACATAA	57.355	25.926	11.04	0.00	34.89	1.90
2733	2964	8.696410	TGACAAAAACTTGACATAAAAAGGAC	57.304	30.769	0.00	0.00	0.00	3.85
2734	2965	7.762159	TGACAAAAACTTGACATAAAAAGGACC	59.238	33.333	0.00	0.00	0.00	4.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
15	16	2.870411	GTTTCTACGGCCATATGGTGAC	59.130	50.000	22.79	12.44	37.57	3.67
118	120	8.719648	GTCATCCACATCATTATTTTGCAAAAA	58.280	29.630	27.10	13.34	0.00	1.94
119	121	8.095792	AGTCATCCACATCATTATTTTGCAAAA	58.904	29.630	25.76	25.76	0.00	2.44
120	122	7.613585	AGTCATCCACATCATTATTTTGCAAA	58.386	30.769	8.05	8.05	0.00	3.68
121	123	7.172868	AGTCATCCACATCATTATTTTGCAA	57.827	32.000	0.00	0.00	0.00	4.08
137	143	3.220940	TCAAACACATGCAAGTCATCCA	58.779	40.909	0.00	0.00	31.79	3.41
154	160	4.277476	ACAAAGTTCTCCACACCATCAAA	58.723	39.130	0.00	0.00	0.00	2.69
174	188	4.522405	CCAATCCACTTTTCACCACATACA	59.478	41.667	0.00	0.00	0.00	2.29
175	189	4.764823	TCCAATCCACTTTTCACCACATAC	59.235	41.667	0.00	0.00	0.00	2.39
176	190	4.991776	TCCAATCCACTTTTCACCACATA	58.008	39.130	0.00	0.00	0.00	2.29
198	212	2.100749	CCACATCATCAAGTGCATGCAT	59.899	45.455	25.64	5.67	34.48	3.96
206	220	0.615331	AGCCGTCCACATCATCAAGT	59.385	50.000	0.00	0.00	0.00	3.16
221	235	5.236478	CCCACATAGTTTAAGTCATAAGCCG	59.764	44.000	0.00	0.00	0.00	5.52
312	326	8.840867	GTGCATTCTAAGTGAATTCTTAAAACG	58.159	33.333	7.05	0.00	43.00	3.60
320	334	8.832487	CACATTAGTGCATTCTAAGTGAATTC	57.168	34.615	14.55	0.00	39.41	2.17
337	351	9.547753	GAATCATCTACCATGTAACACATTAGT	57.452	33.333	0.00	0.00	36.53	2.24
422	438	5.633182	ACGCATGGTTTTACATCATCAAAAC	59.367	36.000	0.00	0.00	41.67	2.43
442	458	9.736023	CTAATCTTATCTGCATATACATACGCA	57.264	33.333	0.00	0.00	0.00	5.24
450	466	8.409371	CGCTCCTTCTAATCTTATCTGCATATA	58.591	37.037	0.00	0.00	0.00	0.86
452	468	6.350528	CCGCTCCTTCTAATCTTATCTGCATA	60.351	42.308	0.00	0.00	0.00	3.14
455	471	4.241681	CCGCTCCTTCTAATCTTATCTGC	58.758	47.826	0.00	0.00	0.00	4.26
456	472	4.322349	CCCCGCTCCTTCTAATCTTATCTG	60.322	50.000	0.00	0.00	0.00	2.90
457	473	3.835395	CCCCGCTCCTTCTAATCTTATCT	59.165	47.826	0.00	0.00	0.00	1.98
458	474	3.579151	ACCCCGCTCCTTCTAATCTTATC	59.421	47.826	0.00	0.00	0.00	1.75
459	475	3.579151	GACCCCGCTCCTTCTAATCTTAT	59.421	47.826	0.00	0.00	0.00	1.73
460	476	2.963782	GACCCCGCTCCTTCTAATCTTA	59.036	50.000	0.00	0.00	0.00	2.10
462	478	1.415200	GACCCCGCTCCTTCTAATCT	58.585	55.000	0.00	0.00	0.00	2.40
505	533	0.732880	CTGCATGCACAGCTTGAAGC	60.733	55.000	18.46	9.59	42.84	3.86
532	561	1.531264	CGTCACCTCCTACGACATTCG	60.531	57.143	0.00	0.00	46.93	3.34
534	563	0.815734	CCGTCACCTCCTACGACATT	59.184	55.000	0.00	0.00	41.55	2.71
636	676	1.429927	CTGCTCTCATCTTGGCTGCG	61.430	60.000	0.00	0.00	0.00	5.18
650	690	3.249986	AGAGTCTTGATCTTGCTGCTC	57.750	47.619	0.00	0.00	0.00	4.26
651	691	3.428725	CGTAGAGTCTTGATCTTGCTGCT	60.429	47.826	0.00	0.00	0.00	4.24
652	692	2.857152	CGTAGAGTCTTGATCTTGCTGC	59.143	50.000	0.00	0.00	0.00	5.25
655	695	2.881074	TGCGTAGAGTCTTGATCTTGC	58.119	47.619	0.00	0.00	0.00	4.01
656	696	3.862267	CCTTGCGTAGAGTCTTGATCTTG	59.138	47.826	0.00	0.00	0.00	3.02
658	698	2.159170	GCCTTGCGTAGAGTCTTGATCT	60.159	50.000	0.00	0.00	0.00	2.75
659	699	2.197577	GCCTTGCGTAGAGTCTTGATC	58.802	52.381	0.00	0.00	0.00	2.92
661	701	0.246635	GGCCTTGCGTAGAGTCTTGA	59.753	55.000	0.00	0.00	0.00	3.02
662	702	0.037326	TGGCCTTGCGTAGAGTCTTG	60.037	55.000	3.32	0.00	0.00	3.02
710	758	4.436584	CGTACGTCGTCCCCTGATATATTC	60.437	50.000	7.22	0.00	34.52	1.75
715	763	1.439353	GCGTACGTCGTCCCCTGATA	61.439	60.000	17.90	0.00	42.13	2.15
721	769	1.069378	CTTCAAGCGTACGTCGTCCC	61.069	60.000	17.90	0.00	42.13	4.46
723	771	1.671880	GGCTTCAAGCGTACGTCGTC	61.672	60.000	17.90	0.00	43.62	4.20
739	787	0.326264	AACTTTGAGCTCGATGGGCT	59.674	50.000	18.47	0.00	43.26	5.19
743	791	1.927174	CCGGTAACTTTGAGCTCGATG	59.073	52.381	9.64	12.13	0.00	3.84
806	858	3.640029	AGTTACCACGACCAGAAGAAGAA	59.360	43.478	0.00	0.00	0.00	2.52
810	862	2.485426	CGTAGTTACCACGACCAGAAGA	59.515	50.000	0.00	0.00	41.91	2.87
829	881	0.752376	GCTCCTACCAGGTAGAGCGT	60.752	60.000	26.32	0.00	38.29	5.07
877	929	3.961729	CGGAGGAAACCGTTGTCC	58.038	61.111	0.00	5.00	46.70	4.02
1323	1375	2.484203	GCGACGAACGAGGCTAGT	59.516	61.111	0.00	0.00	45.77	2.57
1744	1811	0.030908	GACGCCTTTCGATCGAGGAT	59.969	55.000	23.49	12.44	41.67	3.24
1793	1883	0.108851	TCGCTGCTCGCACTAATCAA	60.109	50.000	0.00	0.00	39.08	2.57
2335	2462	2.280797	GCGAACACCACCAGCTCA	60.281	61.111	0.00	0.00	0.00	4.26
2341	2468	2.668550	GGGACAGCGAACACCACC	60.669	66.667	0.00	0.00	0.00	4.61
2431	2637	0.249699	ACGATCGTCACCACAAAGCA	60.250	50.000	16.60	0.00	0.00	3.91
2432	2638	0.163788	CACGATCGTCACCACAAAGC	59.836	55.000	19.84	0.00	0.00	3.51
2445	2659	5.467705	AGTACAGGTTTTGTAGTCACGATC	58.532	41.667	0.00	0.00	41.09	3.69
2504	2729	5.754890	AGAAACAGCAAAATAAAACTGCAGG	59.245	36.000	19.93	0.00	38.58	4.85
2552	2780	8.834465	AGCACAGTTAGCAATTCTTCATAATAG	58.166	33.333	0.00	0.00	0.00	1.73
2638	2866	6.590292	CGTCTTTTAGCTTGTAATTCTGAGGA	59.410	38.462	0.00	0.00	0.00	3.71
2639	2867	6.673316	GCGTCTTTTAGCTTGTAATTCTGAGG	60.673	42.308	0.00	0.00	0.00	3.86
2659	2890	0.721718	GCTAATCAAGTTGCGCGTCT	59.278	50.000	8.43	0.00	0.00	4.18
2662	2893	1.529826	GGAAGCTAATCAAGTTGCGCG	60.530	52.381	0.00	0.00	0.00	6.86
2666	2897	6.173339	TGTCTTAGGGAAGCTAATCAAGTTG	58.827	40.000	0.00	0.00	32.21	3.16
2676	2907	4.640771	TGACAATTGTCTTAGGGAAGCT	57.359	40.909	32.57	0.00	44.99	3.74
2697	2928	8.997323	TGTCAAGTTTTTGTCAATGTCAAATTT	58.003	25.926	6.50	0.91	35.25	1.82
2701	2932	9.645059	TTTATGTCAAGTTTTTGTCAATGTCAA	57.355	25.926	0.00	0.00	36.27	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.