Multiple sequence alignment - TraesCS3B01G109300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G109300 chr3B 100.000 2762 0 0 1 2762 75320233 75322994 0.000000e+00 5101.0
1 TraesCS3B01G109300 chr3B 88.133 632 74 1 2128 2759 107628512 107629142 0.000000e+00 750.0
2 TraesCS3B01G109300 chr3B 87.273 55 5 2 1 53 126919172 126919226 8.260000e-06 62.1
3 TraesCS3B01G109300 chr3D 93.245 1510 73 13 549 2048 47782947 47784437 0.000000e+00 2196.0
4 TraesCS3B01G109300 chr3D 89.883 257 23 3 303 557 47782551 47782806 7.380000e-86 327.0
5 TraesCS3B01G109300 chr3A 93.114 1365 74 9 693 2048 60203626 60204979 0.000000e+00 1982.0
6 TraesCS3B01G109300 chr3A 95.714 70 1 2 638 707 60203543 60203610 8.090000e-21 111.0
7 TraesCS3B01G109300 chr3A 88.235 51 4 2 1 50 230018647 230018696 2.970000e-05 60.2
8 TraesCS3B01G109300 chr3A 88.235 51 4 2 1 50 579570980 579571029 2.970000e-05 60.2
9 TraesCS3B01G109300 chr3A 88.235 51 4 2 1 50 671363993 671363944 2.970000e-05 60.2
10 TraesCS3B01G109300 chrUn 100.000 489 0 0 1 489 39458656 39458168 0.000000e+00 904.0
11 TraesCS3B01G109300 chr2D 88.365 636 72 2 2128 2762 73486929 73486295 0.000000e+00 763.0
12 TraesCS3B01G109300 chr2D 88.851 583 60 1 2185 2762 372609808 372609226 0.000000e+00 712.0
13 TraesCS3B01G109300 chr5D 87.072 642 77 4 2127 2762 459144984 459145625 0.000000e+00 721.0
14 TraesCS3B01G109300 chr4A 86.541 639 81 3 2127 2762 546017167 546016531 0.000000e+00 699.0
15 TraesCS3B01G109300 chr2B 87.253 557 70 1 2127 2683 724735472 724736027 3.880000e-178 634.0
16 TraesCS3B01G109300 chr2B 85.413 617 77 5 2129 2734 468234474 468235088 1.810000e-176 628.0
17 TraesCS3B01G109300 chr2B 95.000 40 1 1 1 39 690995123 690995162 8.260000e-06 62.1
18 TraesCS3B01G109300 chr1D 84.951 618 77 8 2127 2733 88220085 88219473 1.820000e-171 612.0
19 TraesCS3B01G109300 chr1D 91.667 48 3 1 1 47 360356328 360356375 6.380000e-07 65.8
20 TraesCS3B01G109300 chr1D 94.444 36 1 1 1818 1852 77013458 77013423 1.000000e-03 54.7
21 TraesCS3B01G109300 chr5B 84.927 617 76 7 2150 2762 438501959 438501356 2.350000e-170 608.0
22 TraesCS3B01G109300 chr5B 97.222 36 1 0 1817 1852 116684082 116684117 8.260000e-06 62.1
23 TraesCS3B01G109300 chr6B 95.000 40 2 0 368 407 66694836 66694875 2.300000e-06 63.9
24 TraesCS3B01G109300 chr6D 100.000 33 0 0 1820 1852 417896973 417896941 8.260000e-06 62.1
25 TraesCS3B01G109300 chr7D 91.111 45 3 1 1808 1852 590418249 590418292 2.970000e-05 60.2
26 TraesCS3B01G109300 chr4B 88.235 51 4 2 1 50 569571017 569570968 2.970000e-05 60.2
27 TraesCS3B01G109300 chr2A 100.000 31 0 0 1822 1852 613480720 613480690 1.070000e-04 58.4
28 TraesCS3B01G109300 chr7B 92.500 40 2 1 1808 1847 665386449 665386487 3.840000e-04 56.5
29 TraesCS3B01G109300 chr4D 85.000 60 4 5 2 58 30403362 30403305 3.840000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G109300 chr3B 75320233 75322994 2761 False 5101.0 5101 100.000 1 2762 1 chr3B.!!$F1 2761
1 TraesCS3B01G109300 chr3B 107628512 107629142 630 False 750.0 750 88.133 2128 2759 1 chr3B.!!$F2 631
2 TraesCS3B01G109300 chr3D 47782551 47784437 1886 False 1261.5 2196 91.564 303 2048 2 chr3D.!!$F1 1745
3 TraesCS3B01G109300 chr3A 60203543 60204979 1436 False 1046.5 1982 94.414 638 2048 2 chr3A.!!$F3 1410
4 TraesCS3B01G109300 chr2D 73486295 73486929 634 True 763.0 763 88.365 2128 2762 1 chr2D.!!$R1 634
5 TraesCS3B01G109300 chr2D 372609226 372609808 582 True 712.0 712 88.851 2185 2762 1 chr2D.!!$R2 577
6 TraesCS3B01G109300 chr5D 459144984 459145625 641 False 721.0 721 87.072 2127 2762 1 chr5D.!!$F1 635
7 TraesCS3B01G109300 chr4A 546016531 546017167 636 True 699.0 699 86.541 2127 2762 1 chr4A.!!$R1 635
8 TraesCS3B01G109300 chr2B 724735472 724736027 555 False 634.0 634 87.253 2127 2683 1 chr2B.!!$F3 556
9 TraesCS3B01G109300 chr2B 468234474 468235088 614 False 628.0 628 85.413 2129 2734 1 chr2B.!!$F1 605
10 TraesCS3B01G109300 chr1D 88219473 88220085 612 True 612.0 612 84.951 2127 2733 1 chr1D.!!$R2 606
11 TraesCS3B01G109300 chr5B 438501356 438501959 603 True 608.0 608 84.927 2150 2762 1 chr5B.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.033405 TTGGGACGGAGGGAGTAGAG 60.033 60.0 0.0 0.00 0.00 2.43 F
812 1001 0.034283 TCTTGGCCATGCATGTGCTA 60.034 50.0 27.9 23.18 42.66 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1407 0.179073 CTCCAAGTCCGCCACCTATG 60.179 60.0 0.0 0.0 0.0 2.23 R
2090 2291 0.182537 TATGACCCCTCAAATGCCCG 59.817 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.296813 CTAAGACAAGAATTTTGGGACGG 57.703 43.478 0.00 0.00 0.00 4.79
23 24 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
24 25 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
25 26 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
26 27 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
27 28 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
28 29 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
29 30 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
30 31 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
31 32 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
32 33 0.410663 TTTGGGACGGAGGGAGTAGA 59.589 55.000 0.00 0.00 0.00 2.59
33 34 0.033405 TTGGGACGGAGGGAGTAGAG 60.033 60.000 0.00 0.00 0.00 2.43
34 35 0.917821 TGGGACGGAGGGAGTAGAGA 60.918 60.000 0.00 0.00 0.00 3.10
35 36 0.258194 GGGACGGAGGGAGTAGAGAA 59.742 60.000 0.00 0.00 0.00 2.87
36 37 1.341778 GGGACGGAGGGAGTAGAGAAA 60.342 57.143 0.00 0.00 0.00 2.52
37 38 2.454538 GGACGGAGGGAGTAGAGAAAA 58.545 52.381 0.00 0.00 0.00 2.29
38 39 2.166050 GGACGGAGGGAGTAGAGAAAAC 59.834 54.545 0.00 0.00 0.00 2.43
39 40 1.817447 ACGGAGGGAGTAGAGAAAACG 59.183 52.381 0.00 0.00 0.00 3.60
40 41 1.134560 CGGAGGGAGTAGAGAAAACGG 59.865 57.143 0.00 0.00 0.00 4.44
41 42 2.454538 GGAGGGAGTAGAGAAAACGGA 58.545 52.381 0.00 0.00 0.00 4.69
42 43 2.427812 GGAGGGAGTAGAGAAAACGGAG 59.572 54.545 0.00 0.00 0.00 4.63
43 44 3.354467 GAGGGAGTAGAGAAAACGGAGA 58.646 50.000 0.00 0.00 0.00 3.71
44 45 3.358118 AGGGAGTAGAGAAAACGGAGAG 58.642 50.000 0.00 0.00 0.00 3.20
45 46 3.010361 AGGGAGTAGAGAAAACGGAGAGA 59.990 47.826 0.00 0.00 0.00 3.10
46 47 3.379057 GGGAGTAGAGAAAACGGAGAGAG 59.621 52.174 0.00 0.00 0.00 3.20
47 48 4.263435 GGAGTAGAGAAAACGGAGAGAGA 58.737 47.826 0.00 0.00 0.00 3.10
48 49 4.701171 GGAGTAGAGAAAACGGAGAGAGAA 59.299 45.833 0.00 0.00 0.00 2.87
49 50 5.392272 GGAGTAGAGAAAACGGAGAGAGAAC 60.392 48.000 0.00 0.00 0.00 3.01
50 51 5.318630 AGTAGAGAAAACGGAGAGAGAACT 58.681 41.667 0.00 0.00 0.00 3.01
51 52 6.474630 AGTAGAGAAAACGGAGAGAGAACTA 58.525 40.000 0.00 0.00 0.00 2.24
52 53 5.890424 AGAGAAAACGGAGAGAGAACTAG 57.110 43.478 0.00 0.00 0.00 2.57
53 54 5.562635 AGAGAAAACGGAGAGAGAACTAGA 58.437 41.667 0.00 0.00 0.00 2.43
54 55 6.184789 AGAGAAAACGGAGAGAGAACTAGAT 58.815 40.000 0.00 0.00 0.00 1.98
55 56 6.094881 AGAGAAAACGGAGAGAGAACTAGATG 59.905 42.308 0.00 0.00 0.00 2.90
56 57 4.993029 AAACGGAGAGAGAACTAGATGG 57.007 45.455 0.00 0.00 0.00 3.51
57 58 3.935818 ACGGAGAGAGAACTAGATGGA 57.064 47.619 0.00 0.00 0.00 3.41
58 59 4.447138 ACGGAGAGAGAACTAGATGGAT 57.553 45.455 0.00 0.00 0.00 3.41
59 60 4.798882 ACGGAGAGAGAACTAGATGGATT 58.201 43.478 0.00 0.00 0.00 3.01
60 61 5.205056 ACGGAGAGAGAACTAGATGGATTT 58.795 41.667 0.00 0.00 0.00 2.17
61 62 5.659079 ACGGAGAGAGAACTAGATGGATTTT 59.341 40.000 0.00 0.00 0.00 1.82
62 63 6.155393 ACGGAGAGAGAACTAGATGGATTTTT 59.845 38.462 0.00 0.00 0.00 1.94
63 64 6.478344 CGGAGAGAGAACTAGATGGATTTTTG 59.522 42.308 0.00 0.00 0.00 2.44
64 65 6.259829 GGAGAGAGAACTAGATGGATTTTTGC 59.740 42.308 0.00 0.00 0.00 3.68
65 66 6.715280 AGAGAGAACTAGATGGATTTTTGCA 58.285 36.000 0.00 0.00 0.00 4.08
66 67 7.170965 AGAGAGAACTAGATGGATTTTTGCAA 58.829 34.615 0.00 0.00 0.00 4.08
67 68 7.667219 AGAGAGAACTAGATGGATTTTTGCAAA 59.333 33.333 8.05 8.05 0.00 3.68
68 69 7.597386 AGAGAACTAGATGGATTTTTGCAAAC 58.403 34.615 12.39 0.50 0.00 2.93
69 70 7.231317 AGAGAACTAGATGGATTTTTGCAAACA 59.769 33.333 12.39 5.81 0.00 2.83
70 71 7.725251 AGAACTAGATGGATTTTTGCAAACAA 58.275 30.769 12.39 9.98 0.00 2.83
71 72 8.370182 AGAACTAGATGGATTTTTGCAAACAAT 58.630 29.630 12.39 14.12 35.21 2.71
72 73 8.907222 AACTAGATGGATTTTTGCAAACAATT 57.093 26.923 12.39 2.45 35.21 2.32
73 74 9.995003 AACTAGATGGATTTTTGCAAACAATTA 57.005 25.926 12.39 8.72 35.21 1.40
124 125 8.954950 ATGTATGTAATTTCTCTCTCACAAGG 57.045 34.615 0.00 0.00 0.00 3.61
125 126 7.907389 TGTATGTAATTTCTCTCTCACAAGGT 58.093 34.615 0.00 0.00 0.00 3.50
126 127 9.031537 TGTATGTAATTTCTCTCTCACAAGGTA 57.968 33.333 0.00 0.00 0.00 3.08
127 128 9.522804 GTATGTAATTTCTCTCTCACAAGGTAG 57.477 37.037 0.00 0.00 0.00 3.18
128 129 7.540474 TGTAATTTCTCTCTCACAAGGTAGT 57.460 36.000 0.00 0.00 0.00 2.73
129 130 7.963532 TGTAATTTCTCTCTCACAAGGTAGTT 58.036 34.615 0.00 0.00 0.00 2.24
130 131 9.085645 TGTAATTTCTCTCTCACAAGGTAGTTA 57.914 33.333 0.00 0.00 0.00 2.24
134 135 7.883391 TTCTCTCTCACAAGGTAGTTATAGG 57.117 40.000 0.00 0.00 0.00 2.57
135 136 6.971340 TCTCTCTCACAAGGTAGTTATAGGT 58.029 40.000 0.00 0.00 0.00 3.08
136 137 7.411808 TCTCTCTCACAAGGTAGTTATAGGTT 58.588 38.462 0.00 0.00 0.00 3.50
137 138 8.554870 TCTCTCTCACAAGGTAGTTATAGGTTA 58.445 37.037 0.00 0.00 0.00 2.85
138 139 9.186837 CTCTCTCACAAGGTAGTTATAGGTTAA 57.813 37.037 0.00 0.00 0.00 2.01
139 140 9.537852 TCTCTCACAAGGTAGTTATAGGTTAAA 57.462 33.333 0.00 0.00 0.00 1.52
156 157 7.296628 AGGTTAAAATTAGACAATTGTGCCA 57.703 32.000 17.58 0.00 34.53 4.92
157 158 7.906327 AGGTTAAAATTAGACAATTGTGCCAT 58.094 30.769 17.58 1.41 34.53 4.40
158 159 8.034804 AGGTTAAAATTAGACAATTGTGCCATC 58.965 33.333 17.58 0.39 34.53 3.51
159 160 7.009174 GGTTAAAATTAGACAATTGTGCCATCG 59.991 37.037 17.58 0.00 34.53 3.84
160 161 5.643379 AAATTAGACAATTGTGCCATCGT 57.357 34.783 17.58 0.00 34.53 3.73
161 162 4.621068 ATTAGACAATTGTGCCATCGTG 57.379 40.909 17.58 0.00 0.00 4.35
162 163 0.523072 AGACAATTGTGCCATCGTGC 59.477 50.000 17.58 0.00 0.00 5.34
163 164 0.794229 GACAATTGTGCCATCGTGCG 60.794 55.000 17.58 0.00 0.00 5.34
164 165 1.209898 CAATTGTGCCATCGTGCGT 59.790 52.632 0.00 0.00 0.00 5.24
165 166 0.794229 CAATTGTGCCATCGTGCGTC 60.794 55.000 0.00 0.00 0.00 5.19
166 167 1.233950 AATTGTGCCATCGTGCGTCA 61.234 50.000 0.00 0.00 0.00 4.35
167 168 1.638388 ATTGTGCCATCGTGCGTCAG 61.638 55.000 0.00 0.00 0.00 3.51
168 169 4.152625 GTGCCATCGTGCGTCAGC 62.153 66.667 0.00 0.00 45.41 4.26
184 185 4.760757 GCAGGGAGCGAAGGATAC 57.239 61.111 0.00 0.00 0.00 2.24
185 186 1.069935 GCAGGGAGCGAAGGATACC 59.930 63.158 0.00 0.00 37.17 2.73
186 187 1.403687 GCAGGGAGCGAAGGATACCT 61.404 60.000 0.00 0.00 33.87 3.08
187 188 1.996798 CAGGGAGCGAAGGATACCTA 58.003 55.000 0.00 0.00 31.13 3.08
188 189 1.889829 CAGGGAGCGAAGGATACCTAG 59.110 57.143 0.00 0.00 31.13 3.02
189 190 1.499870 AGGGAGCGAAGGATACCTAGT 59.500 52.381 0.00 0.00 31.13 2.57
190 191 2.091222 AGGGAGCGAAGGATACCTAGTT 60.091 50.000 0.00 0.00 31.13 2.24
191 192 2.036089 GGGAGCGAAGGATACCTAGTTG 59.964 54.545 0.00 0.00 31.13 3.16
192 193 2.546162 GGAGCGAAGGATACCTAGTTGC 60.546 54.545 0.00 0.00 31.13 4.17
193 194 2.362717 GAGCGAAGGATACCTAGTTGCT 59.637 50.000 4.48 4.48 31.13 3.91
194 195 3.563223 AGCGAAGGATACCTAGTTGCTA 58.437 45.455 0.00 0.00 31.13 3.49
195 196 3.958798 AGCGAAGGATACCTAGTTGCTAA 59.041 43.478 0.00 0.00 31.13 3.09
196 197 4.049869 GCGAAGGATACCTAGTTGCTAAC 58.950 47.826 0.00 0.00 31.13 2.34
197 198 4.441079 GCGAAGGATACCTAGTTGCTAACA 60.441 45.833 0.00 0.00 31.13 2.41
198 199 5.282510 CGAAGGATACCTAGTTGCTAACAG 58.717 45.833 0.00 0.00 31.13 3.16
199 200 5.067413 CGAAGGATACCTAGTTGCTAACAGA 59.933 44.000 0.00 0.00 31.13 3.41
200 201 6.239064 CGAAGGATACCTAGTTGCTAACAGAT 60.239 42.308 0.00 0.00 31.13 2.90
201 202 7.439108 AAGGATACCTAGTTGCTAACAGATT 57.561 36.000 0.00 0.00 31.13 2.40
202 203 7.056844 AGGATACCTAGTTGCTAACAGATTC 57.943 40.000 0.00 0.00 28.47 2.52
203 204 5.921408 GGATACCTAGTTGCTAACAGATTCG 59.079 44.000 0.00 0.00 0.00 3.34
204 205 4.124851 ACCTAGTTGCTAACAGATTCGG 57.875 45.455 0.00 0.00 0.00 4.30
205 206 3.118738 ACCTAGTTGCTAACAGATTCGGG 60.119 47.826 0.00 0.00 0.00 5.14
206 207 2.403252 AGTTGCTAACAGATTCGGGG 57.597 50.000 0.00 0.00 0.00 5.73
207 208 1.628846 AGTTGCTAACAGATTCGGGGT 59.371 47.619 0.00 0.00 0.00 4.95
208 209 1.737793 GTTGCTAACAGATTCGGGGTG 59.262 52.381 0.00 0.00 0.00 4.61
209 210 1.271856 TGCTAACAGATTCGGGGTGA 58.728 50.000 0.00 0.00 0.00 4.02
210 211 1.626321 TGCTAACAGATTCGGGGTGAA 59.374 47.619 0.00 0.00 41.81 3.18
211 212 2.007608 GCTAACAGATTCGGGGTGAAC 58.992 52.381 0.00 0.00 40.00 3.18
212 213 2.268298 CTAACAGATTCGGGGTGAACG 58.732 52.381 0.00 0.00 40.00 3.95
213 214 0.321298 AACAGATTCGGGGTGAACGG 60.321 55.000 0.00 0.00 40.00 4.44
214 215 2.106683 CAGATTCGGGGTGAACGGC 61.107 63.158 0.00 0.00 40.00 5.68
215 216 3.192922 GATTCGGGGTGAACGGCG 61.193 66.667 4.80 4.80 40.00 6.46
216 217 4.770874 ATTCGGGGTGAACGGCGG 62.771 66.667 13.24 0.00 40.00 6.13
220 221 4.476752 GGGGTGAACGGCGGCATA 62.477 66.667 13.24 0.00 0.00 3.14
221 222 2.895372 GGGTGAACGGCGGCATAG 60.895 66.667 13.24 0.00 0.00 2.23
222 223 2.125269 GGTGAACGGCGGCATAGT 60.125 61.111 13.24 0.00 0.00 2.12
223 224 2.171725 GGTGAACGGCGGCATAGTC 61.172 63.158 13.24 0.25 0.00 2.59
224 225 2.202690 TGAACGGCGGCATAGTCG 60.203 61.111 13.24 0.00 45.76 4.18
225 226 2.103538 GAACGGCGGCATAGTCGA 59.896 61.111 13.24 0.00 42.53 4.20
226 227 1.517694 GAACGGCGGCATAGTCGAA 60.518 57.895 13.24 0.00 42.53 3.71
227 228 1.480219 GAACGGCGGCATAGTCGAAG 61.480 60.000 13.24 0.00 42.53 3.79
228 229 3.330853 CGGCGGCATAGTCGAAGC 61.331 66.667 10.53 0.00 42.53 3.86
229 230 2.967615 GGCGGCATAGTCGAAGCC 60.968 66.667 3.07 8.83 44.89 4.35
233 234 3.724494 GCATAGTCGAAGCCAGGC 58.276 61.111 1.84 1.84 0.00 4.85
234 235 1.153369 GCATAGTCGAAGCCAGGCA 60.153 57.895 15.80 0.00 0.00 4.75
235 236 1.156645 GCATAGTCGAAGCCAGGCAG 61.157 60.000 15.80 4.59 0.00 4.85
236 237 0.531532 CATAGTCGAAGCCAGGCAGG 60.532 60.000 15.80 1.68 41.84 4.85
286 287 4.261888 CCGAAACGGTGGAGTGAG 57.738 61.111 1.80 0.00 42.73 3.51
287 288 1.663739 CCGAAACGGTGGAGTGAGA 59.336 57.895 1.80 0.00 42.73 3.27
288 289 0.388649 CCGAAACGGTGGAGTGAGAG 60.389 60.000 1.80 0.00 42.73 3.20
289 290 0.596577 CGAAACGGTGGAGTGAGAGA 59.403 55.000 0.00 0.00 0.00 3.10
290 291 1.000607 CGAAACGGTGGAGTGAGAGAA 60.001 52.381 0.00 0.00 0.00 2.87
291 292 2.352814 CGAAACGGTGGAGTGAGAGAAT 60.353 50.000 0.00 0.00 0.00 2.40
292 293 2.751166 AACGGTGGAGTGAGAGAATG 57.249 50.000 0.00 0.00 0.00 2.67
293 294 1.633774 ACGGTGGAGTGAGAGAATGT 58.366 50.000 0.00 0.00 0.00 2.71
294 295 1.546476 ACGGTGGAGTGAGAGAATGTC 59.454 52.381 0.00 0.00 0.00 3.06
295 296 1.468224 CGGTGGAGTGAGAGAATGTCG 60.468 57.143 0.00 0.00 0.00 4.35
296 297 1.134965 GGTGGAGTGAGAGAATGTCGG 60.135 57.143 0.00 0.00 0.00 4.79
297 298 1.546476 GTGGAGTGAGAGAATGTCGGT 59.454 52.381 0.00 0.00 0.00 4.69
298 299 1.546029 TGGAGTGAGAGAATGTCGGTG 59.454 52.381 0.00 0.00 0.00 4.94
299 300 1.546476 GGAGTGAGAGAATGTCGGTGT 59.454 52.381 0.00 0.00 0.00 4.16
300 301 2.028930 GGAGTGAGAGAATGTCGGTGTT 60.029 50.000 0.00 0.00 0.00 3.32
301 302 2.989840 GAGTGAGAGAATGTCGGTGTTG 59.010 50.000 0.00 0.00 0.00 3.33
314 315 1.282382 GGTGTTGGGCTAGAAGGGTA 58.718 55.000 0.00 0.00 0.00 3.69
342 343 0.332972 GAGCAAGGGGGAAGGAACAT 59.667 55.000 0.00 0.00 0.00 2.71
356 357 5.453567 AAGGAACATAGTGGAACAAAAGC 57.546 39.130 0.00 0.00 44.16 3.51
359 360 3.134574 ACATAGTGGAACAAAAGCGGA 57.865 42.857 0.00 0.00 44.16 5.54
381 382 2.099921 CTGGGATTGTCAGAGTCCTACG 59.900 54.545 0.00 0.00 34.36 3.51
414 415 2.192263 GGACTCCCACAAATCTCTCCT 58.808 52.381 0.00 0.00 0.00 3.69
415 416 2.093235 GGACTCCCACAAATCTCTCCTG 60.093 54.545 0.00 0.00 0.00 3.86
424 425 2.206576 AATCTCTCCTGGTTTGTGGC 57.793 50.000 0.00 0.00 0.00 5.01
427 428 2.672996 CTCCTGGTTTGTGGCCGG 60.673 66.667 0.00 0.00 0.00 6.13
431 432 1.067250 CTGGTTTGTGGCCGGTTTG 59.933 57.895 1.90 0.00 0.00 2.93
441 442 2.631580 GCCGGTTTGCGGAAATCCA 61.632 57.895 5.09 0.00 35.14 3.41
459 460 3.745803 GACTCGCGAACCCGTCCT 61.746 66.667 11.33 0.00 38.24 3.85
488 489 0.461339 GCGGTATCACGTTGGATGGT 60.461 55.000 0.00 0.00 35.98 3.55
516 518 2.665777 CGTTCGGACGCATCAATCT 58.334 52.632 1.83 0.00 43.03 2.40
522 524 0.179111 GGACGCATCAATCTGGACGA 60.179 55.000 0.00 0.00 0.00 4.20
528 530 2.852143 GCATCAATCTGGACGATTTGCG 60.852 50.000 0.00 0.00 40.33 4.85
533 535 0.249120 TCTGGACGATTTGCGGACAT 59.751 50.000 0.00 0.00 46.49 3.06
537 539 2.250188 GGACGATTTGCGGACATTTTG 58.750 47.619 0.00 0.00 46.49 2.44
557 560 2.740714 GACACGGCGTTGGAGATGC 61.741 63.158 11.19 0.00 39.65 3.91
602 754 3.388308 AGCAGAACATATTCGCTAGCTG 58.612 45.455 13.93 6.25 40.50 4.24
605 757 4.363138 CAGAACATATTCGCTAGCTGTCA 58.637 43.478 13.93 0.00 40.04 3.58
611 764 0.667487 TTCGCTAGCTGTCAGCACAC 60.667 55.000 26.23 13.29 45.56 3.82
618 771 1.947013 CTGTCAGCACACCTGCAAG 59.053 57.895 0.00 0.00 46.97 4.01
624 777 1.406539 CAGCACACCTGCAAGAAAAGT 59.593 47.619 0.00 0.00 46.97 2.66
625 778 2.618241 CAGCACACCTGCAAGAAAAGTA 59.382 45.455 0.00 0.00 46.97 2.24
626 779 3.066621 CAGCACACCTGCAAGAAAAGTAA 59.933 43.478 0.00 0.00 46.97 2.24
627 780 3.699038 AGCACACCTGCAAGAAAAGTAAA 59.301 39.130 0.00 0.00 46.97 2.01
628 781 4.342092 AGCACACCTGCAAGAAAAGTAAAT 59.658 37.500 0.00 0.00 46.97 1.40
629 782 4.681483 GCACACCTGCAAGAAAAGTAAATC 59.319 41.667 0.00 0.00 43.62 2.17
630 783 5.507985 GCACACCTGCAAGAAAAGTAAATCT 60.508 40.000 0.00 0.00 43.62 2.40
631 784 5.916883 CACACCTGCAAGAAAAGTAAATCTG 59.083 40.000 0.00 0.00 34.07 2.90
632 785 4.919754 CACCTGCAAGAAAAGTAAATCTGC 59.080 41.667 0.00 0.00 34.07 4.26
633 786 4.584325 ACCTGCAAGAAAAGTAAATCTGCA 59.416 37.500 0.00 0.00 34.07 4.41
634 787 4.919754 CCTGCAAGAAAAGTAAATCTGCAC 59.080 41.667 0.00 0.00 34.07 4.57
635 788 4.870363 TGCAAGAAAAGTAAATCTGCACC 58.130 39.130 0.00 0.00 30.37 5.01
636 789 4.237724 GCAAGAAAAGTAAATCTGCACCC 58.762 43.478 0.00 0.00 0.00 4.61
690 843 4.084066 TCAACTTTGCATGTACATGTCGAC 60.084 41.667 31.10 18.01 40.80 4.20
747 930 5.650266 TCAAAAAGACCAGAGCAACACTTTA 59.350 36.000 0.00 0.00 0.00 1.85
780 967 3.432933 GCAAATGAAATTGTTCCGTGCAT 59.567 39.130 0.00 0.00 36.10 3.96
781 968 4.083908 GCAAATGAAATTGTTCCGTGCATT 60.084 37.500 0.00 0.00 36.10 3.56
812 1001 0.034283 TCTTGGCCATGCATGTGCTA 60.034 50.000 27.90 23.18 42.66 3.49
871 1066 5.419542 GGTTACTCAGTACAGCATTGATCA 58.580 41.667 0.00 0.00 0.00 2.92
875 1070 3.937079 CTCAGTACAGCATTGATCAAGCA 59.063 43.478 23.08 7.89 0.00 3.91
879 1074 4.703575 AGTACAGCATTGATCAAGCAACAT 59.296 37.500 23.08 12.60 0.00 2.71
898 1093 9.897744 AGCAACATGATTTATTTATCATAACCG 57.102 29.630 0.00 0.00 42.00 4.44
918 1113 7.568199 AACCGGATTATATATAAAGGCATGC 57.432 36.000 9.46 9.90 0.00 4.06
919 1114 6.658849 ACCGGATTATATATAAAGGCATGCA 58.341 36.000 21.36 0.00 0.00 3.96
920 1115 6.767902 ACCGGATTATATATAAAGGCATGCAG 59.232 38.462 21.36 2.40 0.00 4.41
939 1136 2.598686 GCTACCAGCTACCCACTTAC 57.401 55.000 0.00 0.00 38.45 2.34
998 1196 3.330720 CCCTTCCCCGCAGTTCCT 61.331 66.667 0.00 0.00 0.00 3.36
1144 1342 1.390525 TCCATCGGAGGTGGGAGAA 59.609 57.895 0.00 0.00 37.34 2.87
1152 1350 2.361737 GGTGGGAGAAGCAAGGGC 60.362 66.667 0.00 0.00 41.61 5.19
1209 1407 2.509336 CACGACACCTCCATCGCC 60.509 66.667 0.00 0.00 42.12 5.54
1237 1435 0.970937 CGGACTTGGAGGTGGAGCTA 60.971 60.000 0.00 0.00 0.00 3.32
1251 1449 2.698797 TGGAGCTACTACTAACCATGGC 59.301 50.000 13.04 0.00 0.00 4.40
1413 1611 4.074970 GTGGCATTGGAGTTCATATAGGG 58.925 47.826 0.00 0.00 0.00 3.53
1414 1612 3.084786 GGCATTGGAGTTCATATAGGGC 58.915 50.000 0.00 0.00 0.00 5.19
1415 1613 2.744202 GCATTGGAGTTCATATAGGGCG 59.256 50.000 0.00 0.00 0.00 6.13
1530 1728 1.537202 GGATTTCACATAGGCCATCGC 59.463 52.381 5.01 0.00 0.00 4.58
1540 1738 2.799452 GGCCATCGCGGGGTTACTA 61.799 63.158 17.07 0.00 35.02 1.82
1602 1800 3.864983 AAGTGGGGGAGGCGAAGGA 62.865 63.158 0.00 0.00 0.00 3.36
1767 1965 4.394920 GGTGTAGTACATGGTTGATTGGTG 59.605 45.833 6.21 0.00 0.00 4.17
1782 1980 7.169140 GGTTGATTGGTGTGTTAATTTGAGAAC 59.831 37.037 0.00 0.00 0.00 3.01
1848 2049 8.877195 ACTCCCTCTGTAACTTTTTATAAGACA 58.123 33.333 0.00 0.00 0.00 3.41
1947 2148 3.327757 TGGTGTCACCTTCTAAATGAGCT 59.672 43.478 22.56 0.00 39.58 4.09
1960 2161 0.694771 ATGAGCTGGAGTGCCTTGAA 59.305 50.000 0.00 0.00 34.31 2.69
1963 2164 2.284190 GAGCTGGAGTGCCTTGAATAC 58.716 52.381 0.00 0.00 34.31 1.89
2048 2249 8.378172 TCAGATGGTGTCTTTTGTAAAGTTAG 57.622 34.615 0.00 0.00 34.00 2.34
2049 2250 8.208224 TCAGATGGTGTCTTTTGTAAAGTTAGA 58.792 33.333 0.00 0.00 34.00 2.10
2050 2251 8.499162 CAGATGGTGTCTTTTGTAAAGTTAGAG 58.501 37.037 0.00 0.00 34.00 2.43
2051 2252 8.211629 AGATGGTGTCTTTTGTAAAGTTAGAGT 58.788 33.333 0.00 0.00 31.47 3.24
2052 2253 7.548196 TGGTGTCTTTTGTAAAGTTAGAGTG 57.452 36.000 0.00 0.00 0.00 3.51
2053 2254 7.107542 TGGTGTCTTTTGTAAAGTTAGAGTGT 58.892 34.615 0.00 0.00 0.00 3.55
2054 2255 7.279313 TGGTGTCTTTTGTAAAGTTAGAGTGTC 59.721 37.037 0.00 0.00 0.00 3.67
2055 2256 7.254692 GGTGTCTTTTGTAAAGTTAGAGTGTCC 60.255 40.741 0.00 0.00 0.00 4.02
2056 2257 6.477688 TGTCTTTTGTAAAGTTAGAGTGTCCG 59.522 38.462 0.00 0.00 0.00 4.79
2057 2258 5.987347 TCTTTTGTAAAGTTAGAGTGTCCGG 59.013 40.000 0.00 0.00 0.00 5.14
2058 2259 4.942761 TTGTAAAGTTAGAGTGTCCGGT 57.057 40.909 0.00 0.00 0.00 5.28
2059 2260 4.510038 TGTAAAGTTAGAGTGTCCGGTC 57.490 45.455 0.00 0.00 0.00 4.79
2060 2261 3.890756 TGTAAAGTTAGAGTGTCCGGTCA 59.109 43.478 0.00 0.00 0.00 4.02
2061 2262 3.382048 AAAGTTAGAGTGTCCGGTCAC 57.618 47.619 22.23 22.23 38.46 3.67
2063 2264 1.887198 AGTTAGAGTGTCCGGTCACTG 59.113 52.381 34.12 0.00 46.81 3.66
2064 2265 0.601558 TTAGAGTGTCCGGTCACTGC 59.398 55.000 34.12 24.36 46.81 4.40
2065 2266 1.248785 TAGAGTGTCCGGTCACTGCC 61.249 60.000 34.12 22.01 46.81 4.85
2066 2267 3.591254 GAGTGTCCGGTCACTGCCC 62.591 68.421 34.12 18.71 46.81 5.36
2067 2268 3.936203 GTGTCCGGTCACTGCCCA 61.936 66.667 22.40 0.00 35.68 5.36
2068 2269 3.936203 TGTCCGGTCACTGCCCAC 61.936 66.667 0.00 0.00 0.00 4.61
2072 2273 4.082523 CGGTCACTGCCCACGGAT 62.083 66.667 0.00 0.00 0.00 4.18
2073 2274 2.436646 GGTCACTGCCCACGGATG 60.437 66.667 0.00 0.00 0.00 3.51
2074 2275 3.127533 GTCACTGCCCACGGATGC 61.128 66.667 0.00 0.00 0.00 3.91
2075 2276 4.758251 TCACTGCCCACGGATGCG 62.758 66.667 4.58 4.58 0.00 4.73
2077 2278 4.760047 ACTGCCCACGGATGCGTC 62.760 66.667 10.14 0.00 0.00 5.19
2100 2301 3.430862 GCGTCTGCGGGCATTTGA 61.431 61.111 0.00 0.00 38.78 2.69
2101 2302 2.787249 CGTCTGCGGGCATTTGAG 59.213 61.111 0.00 0.00 0.00 3.02
2102 2303 2.753966 CGTCTGCGGGCATTTGAGG 61.754 63.158 0.00 0.00 0.00 3.86
2103 2304 2.045045 TCTGCGGGCATTTGAGGG 60.045 61.111 0.00 0.00 0.00 4.30
2104 2305 3.142838 CTGCGGGCATTTGAGGGG 61.143 66.667 0.00 0.00 0.00 4.79
2105 2306 3.944250 CTGCGGGCATTTGAGGGGT 62.944 63.158 0.00 0.00 0.00 4.95
2106 2307 3.140814 GCGGGCATTTGAGGGGTC 61.141 66.667 0.00 0.00 0.00 4.46
2107 2308 2.354729 CGGGCATTTGAGGGGTCA 59.645 61.111 0.00 0.00 0.00 4.02
2108 2309 1.076777 CGGGCATTTGAGGGGTCAT 60.077 57.895 0.00 0.00 0.00 3.06
2109 2310 0.182537 CGGGCATTTGAGGGGTCATA 59.817 55.000 0.00 0.00 0.00 2.15
2110 2311 1.202927 CGGGCATTTGAGGGGTCATAT 60.203 52.381 0.00 0.00 0.00 1.78
2111 2312 2.752829 CGGGCATTTGAGGGGTCATATT 60.753 50.000 0.00 0.00 0.00 1.28
2112 2313 3.308401 GGGCATTTGAGGGGTCATATTT 58.692 45.455 0.00 0.00 0.00 1.40
2113 2314 3.070015 GGGCATTTGAGGGGTCATATTTG 59.930 47.826 0.00 0.00 0.00 2.32
2114 2315 3.493176 GGCATTTGAGGGGTCATATTTGC 60.493 47.826 0.00 0.00 0.00 3.68
2115 2316 3.493176 GCATTTGAGGGGTCATATTTGCC 60.493 47.826 0.00 0.00 0.00 4.52
2116 2317 2.452600 TTGAGGGGTCATATTTGCCC 57.547 50.000 6.98 6.98 38.04 5.36
2117 2318 1.607225 TGAGGGGTCATATTTGCCCT 58.393 50.000 12.76 7.94 37.98 5.19
2118 2319 1.494721 TGAGGGGTCATATTTGCCCTC 59.505 52.381 16.80 16.80 45.61 4.30
2119 2320 1.777272 GAGGGGTCATATTTGCCCTCT 59.223 52.381 16.53 3.79 43.66 3.69
2120 2321 2.979678 GAGGGGTCATATTTGCCCTCTA 59.020 50.000 16.53 0.00 43.66 2.43
2121 2322 2.711547 AGGGGTCATATTTGCCCTCTAC 59.288 50.000 12.76 1.04 38.51 2.59
2122 2323 2.550208 GGGGTCATATTTGCCCTCTACG 60.550 54.545 12.76 0.00 38.51 3.51
2123 2324 2.550208 GGGTCATATTTGCCCTCTACGG 60.550 54.545 7.92 0.00 36.69 4.02
2124 2325 2.104281 GGTCATATTTGCCCTCTACGGT 59.896 50.000 0.00 0.00 0.00 4.83
2125 2326 3.433173 GGTCATATTTGCCCTCTACGGTT 60.433 47.826 0.00 0.00 0.00 4.44
2152 2354 3.215151 TCAATAAACGGACACAGGCAAA 58.785 40.909 0.00 0.00 0.00 3.68
2182 2396 4.455877 ACTTTCACCAAAAGATCGGATGTC 59.544 41.667 0.00 0.00 46.18 3.06
2191 2405 0.921347 GATCGGATGTCCAAACGACG 59.079 55.000 0.00 0.00 45.23 5.12
2281 2499 3.109592 TTCACCACTTTCGGGCCGT 62.110 57.895 27.32 2.65 0.00 5.68
2301 2519 2.670148 CCCTTCCCCTTCTGGTCGG 61.670 68.421 0.00 0.00 0.00 4.79
2440 2672 3.050275 GTCCTGCCGCCACTTCAC 61.050 66.667 0.00 0.00 0.00 3.18
2446 2678 2.672996 CCGCCACTTCACCTTGGG 60.673 66.667 0.00 0.00 33.01 4.12
2449 2681 1.607467 GCCACTTCACCTTGGGCAT 60.607 57.895 0.00 0.00 44.01 4.40
2497 2729 2.126149 CTCGCGCTCAGACTGCTT 60.126 61.111 5.56 0.00 0.00 3.91
2585 2817 3.834799 GACCGGCGGTAGACCCAG 61.835 72.222 34.29 1.24 35.25 4.45
2655 2887 2.973899 GGACAGAGCTCTTCGCCA 59.026 61.111 15.27 0.00 40.39 5.69
2753 2985 4.284550 GCAGGGGTGGGCACAAGA 62.285 66.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
1 2 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4 5 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
5 6 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
6 7 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
7 8 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
8 9 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
9 10 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
10 11 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
11 12 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
12 13 1.203212 TCTACTCCCTCCGTCCCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
13 14 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28
14 15 0.033405 CTCTACTCCCTCCGTCCCAA 60.033 60.000 0.00 0.00 0.00 4.12
15 16 0.917821 TCTCTACTCCCTCCGTCCCA 60.918 60.000 0.00 0.00 0.00 4.37
16 17 0.258194 TTCTCTACTCCCTCCGTCCC 59.742 60.000 0.00 0.00 0.00 4.46
17 18 2.140839 TTTCTCTACTCCCTCCGTCC 57.859 55.000 0.00 0.00 0.00 4.79
18 19 2.159407 CGTTTTCTCTACTCCCTCCGTC 60.159 54.545 0.00 0.00 0.00 4.79
19 20 1.817447 CGTTTTCTCTACTCCCTCCGT 59.183 52.381 0.00 0.00 0.00 4.69
20 21 1.134560 CCGTTTTCTCTACTCCCTCCG 59.865 57.143 0.00 0.00 0.00 4.63
21 22 2.427812 CTCCGTTTTCTCTACTCCCTCC 59.572 54.545 0.00 0.00 0.00 4.30
22 23 3.354467 TCTCCGTTTTCTCTACTCCCTC 58.646 50.000 0.00 0.00 0.00 4.30
23 24 3.010361 TCTCTCCGTTTTCTCTACTCCCT 59.990 47.826 0.00 0.00 0.00 4.20
24 25 3.354467 TCTCTCCGTTTTCTCTACTCCC 58.646 50.000 0.00 0.00 0.00 4.30
25 26 4.263435 TCTCTCTCCGTTTTCTCTACTCC 58.737 47.826 0.00 0.00 0.00 3.85
26 27 5.413523 AGTTCTCTCTCCGTTTTCTCTACTC 59.586 44.000 0.00 0.00 0.00 2.59
27 28 5.318630 AGTTCTCTCTCCGTTTTCTCTACT 58.681 41.667 0.00 0.00 0.00 2.57
28 29 5.632244 AGTTCTCTCTCCGTTTTCTCTAC 57.368 43.478 0.00 0.00 0.00 2.59
29 30 6.709281 TCTAGTTCTCTCTCCGTTTTCTCTA 58.291 40.000 0.00 0.00 0.00 2.43
30 31 5.562635 TCTAGTTCTCTCTCCGTTTTCTCT 58.437 41.667 0.00 0.00 0.00 3.10
31 32 5.883503 TCTAGTTCTCTCTCCGTTTTCTC 57.116 43.478 0.00 0.00 0.00 2.87
32 33 5.126384 CCATCTAGTTCTCTCTCCGTTTTCT 59.874 44.000 0.00 0.00 0.00 2.52
33 34 5.125739 TCCATCTAGTTCTCTCTCCGTTTTC 59.874 44.000 0.00 0.00 0.00 2.29
34 35 5.017490 TCCATCTAGTTCTCTCTCCGTTTT 58.983 41.667 0.00 0.00 0.00 2.43
35 36 4.601084 TCCATCTAGTTCTCTCTCCGTTT 58.399 43.478 0.00 0.00 0.00 3.60
36 37 4.237976 TCCATCTAGTTCTCTCTCCGTT 57.762 45.455 0.00 0.00 0.00 4.44
37 38 3.935818 TCCATCTAGTTCTCTCTCCGT 57.064 47.619 0.00 0.00 0.00 4.69
38 39 5.782893 AAATCCATCTAGTTCTCTCTCCG 57.217 43.478 0.00 0.00 0.00 4.63
39 40 6.259829 GCAAAAATCCATCTAGTTCTCTCTCC 59.740 42.308 0.00 0.00 0.00 3.71
40 41 6.820656 TGCAAAAATCCATCTAGTTCTCTCTC 59.179 38.462 0.00 0.00 0.00 3.20
41 42 6.715280 TGCAAAAATCCATCTAGTTCTCTCT 58.285 36.000 0.00 0.00 0.00 3.10
42 43 6.992063 TGCAAAAATCCATCTAGTTCTCTC 57.008 37.500 0.00 0.00 0.00 3.20
43 44 7.231317 TGTTTGCAAAAATCCATCTAGTTCTCT 59.769 33.333 14.67 0.00 0.00 3.10
44 45 7.370383 TGTTTGCAAAAATCCATCTAGTTCTC 58.630 34.615 14.67 0.00 0.00 2.87
45 46 7.288810 TGTTTGCAAAAATCCATCTAGTTCT 57.711 32.000 14.67 0.00 0.00 3.01
46 47 7.945033 TTGTTTGCAAAAATCCATCTAGTTC 57.055 32.000 14.67 0.00 0.00 3.01
47 48 8.907222 AATTGTTTGCAAAAATCCATCTAGTT 57.093 26.923 14.67 0.00 38.21 2.24
99 100 8.543774 ACCTTGTGAGAGAGAAATTACATACAT 58.456 33.333 0.00 0.00 0.00 2.29
100 101 7.907389 ACCTTGTGAGAGAGAAATTACATACA 58.093 34.615 0.00 0.00 0.00 2.29
101 102 9.522804 CTACCTTGTGAGAGAGAAATTACATAC 57.477 37.037 0.00 0.00 0.00 2.39
102 103 9.256228 ACTACCTTGTGAGAGAGAAATTACATA 57.744 33.333 0.00 0.00 0.00 2.29
103 104 8.140112 ACTACCTTGTGAGAGAGAAATTACAT 57.860 34.615 0.00 0.00 0.00 2.29
104 105 7.540474 ACTACCTTGTGAGAGAGAAATTACA 57.460 36.000 0.00 0.00 0.00 2.41
108 109 8.919145 CCTATAACTACCTTGTGAGAGAGAAAT 58.081 37.037 0.00 0.00 0.00 2.17
109 110 7.894364 ACCTATAACTACCTTGTGAGAGAGAAA 59.106 37.037 0.00 0.00 0.00 2.52
110 111 7.411808 ACCTATAACTACCTTGTGAGAGAGAA 58.588 38.462 0.00 0.00 0.00 2.87
111 112 6.971340 ACCTATAACTACCTTGTGAGAGAGA 58.029 40.000 0.00 0.00 0.00 3.10
112 113 7.648039 AACCTATAACTACCTTGTGAGAGAG 57.352 40.000 0.00 0.00 0.00 3.20
113 114 9.537852 TTTAACCTATAACTACCTTGTGAGAGA 57.462 33.333 0.00 0.00 0.00 3.10
130 131 9.030452 TGGCACAATTGTCTAATTTTAACCTAT 57.970 29.630 8.48 0.00 34.34 2.57
131 132 8.410673 TGGCACAATTGTCTAATTTTAACCTA 57.589 30.769 8.48 0.00 34.34 3.08
132 133 7.296628 TGGCACAATTGTCTAATTTTAACCT 57.703 32.000 8.48 0.00 34.34 3.50
151 152 4.152625 GCTGACGCACGATGGCAC 62.153 66.667 0.00 0.00 35.78 5.01
152 153 4.678499 TGCTGACGCACGATGGCA 62.678 61.111 0.00 0.00 42.25 4.92
153 154 3.857854 CTGCTGACGCACGATGGC 61.858 66.667 0.00 0.00 42.25 4.40
154 155 3.190849 CCTGCTGACGCACGATGG 61.191 66.667 0.00 0.00 42.25 3.51
155 156 3.190849 CCCTGCTGACGCACGATG 61.191 66.667 0.00 0.00 42.25 3.84
156 157 3.362399 CTCCCTGCTGACGCACGAT 62.362 63.158 0.00 0.00 42.25 3.73
157 158 4.056125 CTCCCTGCTGACGCACGA 62.056 66.667 0.00 0.00 42.25 4.35
161 162 4.742201 TTCGCTCCCTGCTGACGC 62.742 66.667 0.00 0.00 40.11 5.19
162 163 2.507992 CTTCGCTCCCTGCTGACG 60.508 66.667 0.00 0.00 40.11 4.35
163 164 1.965754 ATCCTTCGCTCCCTGCTGAC 61.966 60.000 0.00 0.00 40.11 3.51
164 165 0.397114 TATCCTTCGCTCCCTGCTGA 60.397 55.000 0.00 0.00 40.11 4.26
165 166 0.249657 GTATCCTTCGCTCCCTGCTG 60.250 60.000 0.00 0.00 40.11 4.41
166 167 1.403687 GGTATCCTTCGCTCCCTGCT 61.404 60.000 0.00 0.00 40.11 4.24
167 168 1.069935 GGTATCCTTCGCTCCCTGC 59.930 63.158 0.00 0.00 38.57 4.85
168 169 1.889829 CTAGGTATCCTTCGCTCCCTG 59.110 57.143 0.00 0.00 34.61 4.45
169 170 1.499870 ACTAGGTATCCTTCGCTCCCT 59.500 52.381 0.00 0.00 34.61 4.20
170 171 1.998222 ACTAGGTATCCTTCGCTCCC 58.002 55.000 0.00 0.00 34.61 4.30
171 172 2.546162 GCAACTAGGTATCCTTCGCTCC 60.546 54.545 0.00 0.00 34.61 4.70
172 173 2.362717 AGCAACTAGGTATCCTTCGCTC 59.637 50.000 0.00 0.00 34.61 5.03
173 174 2.389715 AGCAACTAGGTATCCTTCGCT 58.610 47.619 0.00 0.00 34.61 4.93
174 175 2.892784 AGCAACTAGGTATCCTTCGC 57.107 50.000 0.00 0.00 34.61 4.70
175 176 5.067413 TCTGTTAGCAACTAGGTATCCTTCG 59.933 44.000 0.00 0.00 34.61 3.79
176 177 6.466885 TCTGTTAGCAACTAGGTATCCTTC 57.533 41.667 0.00 0.00 34.61 3.46
177 178 7.439108 AATCTGTTAGCAACTAGGTATCCTT 57.561 36.000 0.00 0.00 34.61 3.36
178 179 6.239064 CGAATCTGTTAGCAACTAGGTATCCT 60.239 42.308 0.00 0.00 37.71 3.24
179 180 5.921408 CGAATCTGTTAGCAACTAGGTATCC 59.079 44.000 0.00 0.00 0.00 2.59
180 181 5.921408 CCGAATCTGTTAGCAACTAGGTATC 59.079 44.000 0.00 0.00 0.00 2.24
181 182 5.221461 CCCGAATCTGTTAGCAACTAGGTAT 60.221 44.000 0.00 0.00 0.00 2.73
182 183 4.098960 CCCGAATCTGTTAGCAACTAGGTA 59.901 45.833 0.00 0.00 0.00 3.08
183 184 3.118738 CCCGAATCTGTTAGCAACTAGGT 60.119 47.826 0.00 0.00 0.00 3.08
184 185 3.458189 CCCGAATCTGTTAGCAACTAGG 58.542 50.000 0.00 0.00 0.00 3.02
185 186 3.118738 ACCCCGAATCTGTTAGCAACTAG 60.119 47.826 0.00 0.00 0.00 2.57
186 187 2.835764 ACCCCGAATCTGTTAGCAACTA 59.164 45.455 0.00 0.00 0.00 2.24
187 188 1.628846 ACCCCGAATCTGTTAGCAACT 59.371 47.619 0.00 0.00 0.00 3.16
188 189 1.737793 CACCCCGAATCTGTTAGCAAC 59.262 52.381 0.00 0.00 0.00 4.17
189 190 1.626321 TCACCCCGAATCTGTTAGCAA 59.374 47.619 0.00 0.00 0.00 3.91
190 191 1.271856 TCACCCCGAATCTGTTAGCA 58.728 50.000 0.00 0.00 0.00 3.49
191 192 2.007608 GTTCACCCCGAATCTGTTAGC 58.992 52.381 0.00 0.00 35.63 3.09
192 193 2.268298 CGTTCACCCCGAATCTGTTAG 58.732 52.381 0.00 0.00 35.63 2.34
193 194 1.066716 CCGTTCACCCCGAATCTGTTA 60.067 52.381 0.00 0.00 35.63 2.41
194 195 0.321298 CCGTTCACCCCGAATCTGTT 60.321 55.000 0.00 0.00 35.63 3.16
195 196 1.295423 CCGTTCACCCCGAATCTGT 59.705 57.895 0.00 0.00 35.63 3.41
196 197 2.106683 GCCGTTCACCCCGAATCTG 61.107 63.158 0.00 0.00 35.63 2.90
197 198 2.267961 GCCGTTCACCCCGAATCT 59.732 61.111 0.00 0.00 35.63 2.40
198 199 3.192922 CGCCGTTCACCCCGAATC 61.193 66.667 0.00 0.00 35.63 2.52
199 200 4.770874 CCGCCGTTCACCCCGAAT 62.771 66.667 0.00 0.00 35.63 3.34
203 204 4.476752 TATGCCGCCGTTCACCCC 62.477 66.667 0.00 0.00 0.00 4.95
204 205 2.895372 CTATGCCGCCGTTCACCC 60.895 66.667 0.00 0.00 0.00 4.61
205 206 2.125269 ACTATGCCGCCGTTCACC 60.125 61.111 0.00 0.00 0.00 4.02
206 207 2.514013 CGACTATGCCGCCGTTCAC 61.514 63.158 0.00 0.00 0.00 3.18
207 208 2.202690 CGACTATGCCGCCGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
208 209 1.480219 CTTCGACTATGCCGCCGTTC 61.480 60.000 0.00 0.00 0.00 3.95
209 210 1.518572 CTTCGACTATGCCGCCGTT 60.519 57.895 0.00 0.00 0.00 4.44
210 211 2.104331 CTTCGACTATGCCGCCGT 59.896 61.111 0.00 0.00 0.00 5.68
211 212 3.330853 GCTTCGACTATGCCGCCG 61.331 66.667 0.00 0.00 0.00 6.46
212 213 2.967615 GGCTTCGACTATGCCGCC 60.968 66.667 2.82 0.00 38.53 6.13
215 216 1.889573 GCCTGGCTTCGACTATGCC 60.890 63.158 12.43 10.00 46.36 4.40
216 217 1.153369 TGCCTGGCTTCGACTATGC 60.153 57.895 21.03 0.00 0.00 3.14
217 218 0.531532 CCTGCCTGGCTTCGACTATG 60.532 60.000 21.03 0.00 0.00 2.23
218 219 1.826024 CCTGCCTGGCTTCGACTAT 59.174 57.895 21.03 0.00 0.00 2.12
219 220 3.298958 CCTGCCTGGCTTCGACTA 58.701 61.111 21.03 0.00 0.00 2.59
270 271 0.596577 TCTCTCACTCCACCGTTTCG 59.403 55.000 0.00 0.00 0.00 3.46
271 272 2.814280 TTCTCTCACTCCACCGTTTC 57.186 50.000 0.00 0.00 0.00 2.78
272 273 2.368875 ACATTCTCTCACTCCACCGTTT 59.631 45.455 0.00 0.00 0.00 3.60
273 274 1.971357 ACATTCTCTCACTCCACCGTT 59.029 47.619 0.00 0.00 0.00 4.44
274 275 1.546476 GACATTCTCTCACTCCACCGT 59.454 52.381 0.00 0.00 0.00 4.83
275 276 1.468224 CGACATTCTCTCACTCCACCG 60.468 57.143 0.00 0.00 0.00 4.94
276 277 1.134965 CCGACATTCTCTCACTCCACC 60.135 57.143 0.00 0.00 0.00 4.61
277 278 1.546476 ACCGACATTCTCTCACTCCAC 59.454 52.381 0.00 0.00 0.00 4.02
278 279 1.546029 CACCGACATTCTCTCACTCCA 59.454 52.381 0.00 0.00 0.00 3.86
279 280 1.546476 ACACCGACATTCTCTCACTCC 59.454 52.381 0.00 0.00 0.00 3.85
280 281 2.989840 CAACACCGACATTCTCTCACTC 59.010 50.000 0.00 0.00 0.00 3.51
281 282 2.289072 CCAACACCGACATTCTCTCACT 60.289 50.000 0.00 0.00 0.00 3.41
282 283 2.069273 CCAACACCGACATTCTCTCAC 58.931 52.381 0.00 0.00 0.00 3.51
283 284 1.001974 CCCAACACCGACATTCTCTCA 59.998 52.381 0.00 0.00 0.00 3.27
284 285 1.726853 CCCAACACCGACATTCTCTC 58.273 55.000 0.00 0.00 0.00 3.20
285 286 0.321653 GCCCAACACCGACATTCTCT 60.322 55.000 0.00 0.00 0.00 3.10
286 287 0.321653 AGCCCAACACCGACATTCTC 60.322 55.000 0.00 0.00 0.00 2.87
287 288 0.981183 TAGCCCAACACCGACATTCT 59.019 50.000 0.00 0.00 0.00 2.40
288 289 1.066430 TCTAGCCCAACACCGACATTC 60.066 52.381 0.00 0.00 0.00 2.67
289 290 0.981183 TCTAGCCCAACACCGACATT 59.019 50.000 0.00 0.00 0.00 2.71
290 291 0.981183 TTCTAGCCCAACACCGACAT 59.019 50.000 0.00 0.00 0.00 3.06
291 292 0.320374 CTTCTAGCCCAACACCGACA 59.680 55.000 0.00 0.00 0.00 4.35
292 293 0.391263 CCTTCTAGCCCAACACCGAC 60.391 60.000 0.00 0.00 0.00 4.79
293 294 1.550130 CCCTTCTAGCCCAACACCGA 61.550 60.000 0.00 0.00 0.00 4.69
294 295 1.078426 CCCTTCTAGCCCAACACCG 60.078 63.158 0.00 0.00 0.00 4.94
295 296 1.282382 TACCCTTCTAGCCCAACACC 58.718 55.000 0.00 0.00 0.00 4.16
296 297 2.421529 CCATACCCTTCTAGCCCAACAC 60.422 54.545 0.00 0.00 0.00 3.32
297 298 1.843851 CCATACCCTTCTAGCCCAACA 59.156 52.381 0.00 0.00 0.00 3.33
298 299 2.124411 TCCATACCCTTCTAGCCCAAC 58.876 52.381 0.00 0.00 0.00 3.77
299 300 2.579624 TCCATACCCTTCTAGCCCAA 57.420 50.000 0.00 0.00 0.00 4.12
300 301 2.815357 ATCCATACCCTTCTAGCCCA 57.185 50.000 0.00 0.00 0.00 5.36
301 302 3.515901 CTGTATCCATACCCTTCTAGCCC 59.484 52.174 0.00 0.00 32.33 5.19
314 315 1.143813 CCCCCTTGCTCTGTATCCAT 58.856 55.000 0.00 0.00 0.00 3.41
325 326 1.285078 ACTATGTTCCTTCCCCCTTGC 59.715 52.381 0.00 0.00 0.00 4.01
342 343 2.489971 CAGTCCGCTTTTGTTCCACTA 58.510 47.619 0.00 0.00 0.00 2.74
356 357 0.898320 ACTCTGACAATCCCAGTCCG 59.102 55.000 0.00 0.00 35.15 4.79
359 360 2.334006 AGGACTCTGACAATCCCAGT 57.666 50.000 0.00 0.00 32.47 4.00
381 382 3.644399 GAGTCCGAACCTCCGCCAC 62.644 68.421 0.00 0.00 0.00 5.01
392 393 1.825474 GAGAGATTTGTGGGAGTCCGA 59.175 52.381 2.26 0.00 35.24 4.55
402 403 3.490348 CCACAAACCAGGAGAGATTTGT 58.510 45.455 0.00 0.00 44.08 2.83
414 415 3.082579 GCAAACCGGCCACAAACCA 62.083 57.895 0.00 0.00 0.00 3.67
415 416 2.279851 GCAAACCGGCCACAAACC 60.280 61.111 0.00 0.00 0.00 3.27
427 428 1.128692 CGAGTCTGGATTTCCGCAAAC 59.871 52.381 0.00 0.00 39.43 2.93
431 432 2.517450 CGCGAGTCTGGATTTCCGC 61.517 63.158 0.00 0.00 39.43 5.54
441 442 3.745803 GGACGGGTTCGCGAGTCT 61.746 66.667 21.04 0.63 40.63 3.24
459 460 1.801771 CGTGATACCGCAAACTTTGGA 59.198 47.619 3.69 0.00 0.00 3.53
513 515 0.249120 TGTCCGCAAATCGTCCAGAT 59.751 50.000 0.00 0.00 42.43 2.90
516 518 1.529226 AAATGTCCGCAAATCGTCCA 58.471 45.000 0.00 0.00 36.19 4.02
522 524 3.380142 GTGTCACAAAATGTCCGCAAAT 58.620 40.909 0.00 0.00 0.00 2.32
528 530 0.385473 CGCCGTGTCACAAAATGTCC 60.385 55.000 3.42 0.00 0.00 4.02
533 535 1.025113 TCCAACGCCGTGTCACAAAA 61.025 50.000 3.42 0.00 0.00 2.44
537 539 1.374252 ATCTCCAACGCCGTGTCAC 60.374 57.895 0.00 0.00 0.00 3.67
557 560 1.066929 GGGCATGTGCTAAACCAAAGG 60.067 52.381 4.84 0.00 41.70 3.11
558 561 1.895131 AGGGCATGTGCTAAACCAAAG 59.105 47.619 4.84 0.00 41.70 2.77
559 562 1.892474 GAGGGCATGTGCTAAACCAAA 59.108 47.619 4.84 0.00 41.70 3.28
561 564 0.676466 CGAGGGCATGTGCTAAACCA 60.676 55.000 4.84 0.00 41.70 3.67
562 565 0.392461 TCGAGGGCATGTGCTAAACC 60.392 55.000 4.84 0.00 41.70 3.27
611 764 4.919754 GTGCAGATTTACTTTTCTTGCAGG 59.080 41.667 0.00 0.00 31.45 4.85
618 771 5.473504 TCTTCTGGGTGCAGATTTACTTTTC 59.526 40.000 0.00 0.00 0.00 2.29
624 777 4.774124 CTCATCTTCTGGGTGCAGATTTA 58.226 43.478 0.00 0.00 0.00 1.40
625 778 3.618351 CTCATCTTCTGGGTGCAGATTT 58.382 45.455 0.00 0.00 0.00 2.17
626 779 2.683152 GCTCATCTTCTGGGTGCAGATT 60.683 50.000 0.00 0.00 0.00 2.40
627 780 1.134159 GCTCATCTTCTGGGTGCAGAT 60.134 52.381 0.00 0.00 0.00 2.90
628 781 0.251354 GCTCATCTTCTGGGTGCAGA 59.749 55.000 0.00 0.00 0.00 4.26
629 782 0.252479 AGCTCATCTTCTGGGTGCAG 59.748 55.000 0.00 0.00 0.00 4.41
630 783 0.694771 AAGCTCATCTTCTGGGTGCA 59.305 50.000 0.00 0.00 0.00 4.57
631 784 1.093159 CAAGCTCATCTTCTGGGTGC 58.907 55.000 0.00 0.00 31.27 5.01
632 785 2.775911 TCAAGCTCATCTTCTGGGTG 57.224 50.000 0.00 0.00 31.27 4.61
633 786 3.560882 CCTTTCAAGCTCATCTTCTGGGT 60.561 47.826 0.00 0.00 31.27 4.51
634 787 3.015327 CCTTTCAAGCTCATCTTCTGGG 58.985 50.000 0.00 0.00 31.27 4.45
635 788 2.422832 GCCTTTCAAGCTCATCTTCTGG 59.577 50.000 0.00 0.00 31.27 3.86
636 789 2.422832 GGCCTTTCAAGCTCATCTTCTG 59.577 50.000 0.00 0.00 31.27 3.02
641 794 2.097825 ACATGGCCTTTCAAGCTCATC 58.902 47.619 3.32 0.00 0.00 2.92
690 843 3.851838 GCAACCATTCACACGTACTTTGG 60.852 47.826 0.00 0.00 0.00 3.28
747 930 6.518493 ACAATTTCATTTGCTGTCATGTTCT 58.482 32.000 0.00 0.00 0.00 3.01
780 967 2.433604 TGGCCAAGAAAATGCTGTTCAA 59.566 40.909 0.61 0.00 0.00 2.69
781 968 2.037901 TGGCCAAGAAAATGCTGTTCA 58.962 42.857 0.61 0.00 0.00 3.18
812 1001 3.307480 GGTGGTTTGTAGGTGAGCTGTAT 60.307 47.826 0.00 0.00 0.00 2.29
898 1093 7.814264 AGCTGCATGCCTTTATATATAATCC 57.186 36.000 16.68 0.00 44.23 3.01
920 1115 1.829222 TGTAAGTGGGTAGCTGGTAGC 59.171 52.381 7.50 7.50 42.84 3.58
939 1136 3.355626 AGTGTACACCGATCGATGATG 57.644 47.619 18.44 11.39 0.00 3.07
998 1196 3.243839 GCAAGAAAAAGAAGTGGCCATGA 60.244 43.478 9.72 0.00 0.00 3.07
1167 1365 1.575244 CATGGCTGATACTCACACCG 58.425 55.000 0.00 0.00 0.00 4.94
1188 1386 2.927856 ATGGAGGTGTCGTGCCCA 60.928 61.111 0.00 0.00 0.00 5.36
1196 1394 0.691078 ACCTATGGCGATGGAGGTGT 60.691 55.000 2.61 0.00 40.86 4.16
1209 1407 0.179073 CTCCAAGTCCGCCACCTATG 60.179 60.000 0.00 0.00 0.00 2.23
1367 1565 2.436469 CGCTACCACCTGCATGCA 60.436 61.111 21.29 21.29 0.00 3.96
1497 1695 2.115427 TGAAATCCGATGCCACCTCTA 58.885 47.619 0.00 0.00 0.00 2.43
1530 1728 0.665369 CGGCGCTTATAGTAACCCCG 60.665 60.000 7.64 0.00 0.00 5.73
1540 1738 4.483243 CCCACCACCGGCGCTTAT 62.483 66.667 7.64 0.00 0.00 1.73
1569 1767 2.125673 CTTCCACCTACACCGGCG 60.126 66.667 0.00 0.00 0.00 6.46
1602 1800 2.108278 GACCAACACCGCTACCACCT 62.108 60.000 0.00 0.00 0.00 4.00
1631 1829 2.203480 CCCCACCACCCACAACAG 60.203 66.667 0.00 0.00 0.00 3.16
1801 1999 8.957466 GGGAGTATTTCATTAGCAAACTAAAGT 58.043 33.333 0.00 0.00 41.62 2.66
1802 2000 9.178758 AGGGAGTATTTCATTAGCAAACTAAAG 57.821 33.333 0.00 0.00 41.62 1.85
1947 2148 2.419990 CCATCGTATTCAAGGCACTCCA 60.420 50.000 0.00 0.00 38.49 3.86
1960 2161 7.534723 ACCACATAGTACAATACCATCGTAT 57.465 36.000 0.00 0.00 36.72 3.06
1963 2164 7.827701 AGATACCACATAGTACAATACCATCG 58.172 38.462 0.00 0.00 0.00 3.84
1997 2198 1.057471 TGGACCCGTTACATGTTCCA 58.943 50.000 2.30 7.18 0.00 3.53
2010 2211 2.505819 ACCATCTGATTAGTGTGGACCC 59.494 50.000 15.08 0.00 35.86 4.46
2050 2251 3.936203 TGGGCAGTGACCGGACAC 61.936 66.667 26.56 26.56 40.60 3.67
2051 2252 3.936203 GTGGGCAGTGACCGGACA 61.936 66.667 11.36 5.04 29.56 4.02
2055 2256 4.082523 ATCCGTGGGCAGTGACCG 62.083 66.667 11.36 0.00 29.56 4.79
2056 2257 2.436646 CATCCGTGGGCAGTGACC 60.437 66.667 8.59 8.59 0.00 4.02
2057 2258 3.127533 GCATCCGTGGGCAGTGAC 61.128 66.667 0.00 0.00 0.00 3.67
2058 2259 4.758251 CGCATCCGTGGGCAGTGA 62.758 66.667 0.00 0.00 0.00 3.41
2083 2284 3.386867 CTCAAATGCCCGCAGACGC 62.387 63.158 0.00 0.00 38.22 5.19
2084 2285 2.753966 CCTCAAATGCCCGCAGACG 61.754 63.158 0.00 0.00 39.67 4.18
2085 2286 2.409870 CCCTCAAATGCCCGCAGAC 61.410 63.158 0.00 0.00 0.00 3.51
2086 2287 2.045045 CCCTCAAATGCCCGCAGA 60.045 61.111 0.00 0.00 0.00 4.26
2087 2288 3.142838 CCCCTCAAATGCCCGCAG 61.143 66.667 0.00 0.00 0.00 5.18
2088 2289 3.936772 GACCCCTCAAATGCCCGCA 62.937 63.158 0.00 0.00 0.00 5.69
2089 2290 3.140814 GACCCCTCAAATGCCCGC 61.141 66.667 0.00 0.00 0.00 6.13
2090 2291 0.182537 TATGACCCCTCAAATGCCCG 59.817 55.000 0.00 0.00 0.00 6.13
2091 2292 2.683211 ATATGACCCCTCAAATGCCC 57.317 50.000 0.00 0.00 0.00 5.36
2092 2293 3.493176 GCAAATATGACCCCTCAAATGCC 60.493 47.826 0.00 0.00 0.00 4.40
2093 2294 3.493176 GGCAAATATGACCCCTCAAATGC 60.493 47.826 0.00 0.00 0.00 3.56
2094 2295 4.326504 GGCAAATATGACCCCTCAAATG 57.673 45.455 0.00 0.00 0.00 2.32
2104 2305 3.470645 ACCGTAGAGGGCAAATATGAC 57.529 47.619 0.00 0.00 46.96 3.06
2105 2306 3.199071 ACAACCGTAGAGGGCAAATATGA 59.801 43.478 0.00 0.00 46.96 2.15
2106 2307 3.541632 ACAACCGTAGAGGGCAAATATG 58.458 45.455 0.00 0.00 46.96 1.78
2107 2308 3.926058 ACAACCGTAGAGGGCAAATAT 57.074 42.857 0.00 0.00 46.96 1.28
2108 2309 4.395959 CTACAACCGTAGAGGGCAAATA 57.604 45.455 0.00 0.00 46.98 1.40
2109 2310 3.261981 CTACAACCGTAGAGGGCAAAT 57.738 47.619 0.00 0.00 46.98 2.32
2110 2311 2.754946 CTACAACCGTAGAGGGCAAA 57.245 50.000 0.00 0.00 46.98 3.68
2118 2319 6.197842 GTCCGTTTATTGATCTACAACCGTAG 59.802 42.308 0.00 0.00 45.62 3.51
2119 2320 6.035843 GTCCGTTTATTGATCTACAACCGTA 58.964 40.000 0.00 0.00 41.52 4.02
2120 2321 4.866486 GTCCGTTTATTGATCTACAACCGT 59.134 41.667 0.00 0.00 41.52 4.83
2121 2322 4.865925 TGTCCGTTTATTGATCTACAACCG 59.134 41.667 0.00 0.00 41.52 4.44
2122 2323 5.640357 TGTGTCCGTTTATTGATCTACAACC 59.360 40.000 0.00 0.00 41.52 3.77
2123 2324 6.183360 CCTGTGTCCGTTTATTGATCTACAAC 60.183 42.308 0.00 0.00 41.52 3.32
2124 2325 5.872617 CCTGTGTCCGTTTATTGATCTACAA 59.127 40.000 0.00 0.00 42.95 2.41
2125 2326 5.416083 CCTGTGTCCGTTTATTGATCTACA 58.584 41.667 0.00 0.00 0.00 2.74
2135 2336 1.671845 GTGTTTGCCTGTGTCCGTTTA 59.328 47.619 0.00 0.00 0.00 2.01
2152 2354 6.293955 CCGATCTTTTGGTGAAAGTATTGTGT 60.294 38.462 0.00 0.00 44.17 3.72
2182 2396 1.666700 TGAACTTTGGTCGTCGTTTGG 59.333 47.619 0.00 0.00 0.00 3.28
2191 2405 1.935199 TCCGTCGTTTGAACTTTGGTC 59.065 47.619 0.00 0.00 0.00 4.02
2281 2499 1.229853 GACCAGAAGGGGAAGGGGA 60.230 63.158 0.00 0.00 42.91 4.81
2328 2546 1.001269 AGTCGGACGATCCTCCACA 60.001 57.895 10.83 0.00 33.30 4.17
2352 2570 2.049433 CGACGACGGCTCCTTGTT 60.049 61.111 0.00 0.00 35.72 2.83
2389 2616 0.841961 CCTCAAGGGCCTCATCATCA 59.158 55.000 6.46 0.00 0.00 3.07
2430 2662 3.365265 GCCCAAGGTGAAGTGGCG 61.365 66.667 0.00 0.00 33.21 5.69
2497 2729 0.896019 GGCTCTCCGGCTAGCTATCA 60.896 60.000 22.24 0.00 38.80 2.15
2655 2887 1.985116 GAGCAAGGGAGAGGGACGT 60.985 63.158 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.