Multiple sequence alignment - TraesCS3B01G107900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G107900 chr3B 100.000 5701 0 0 1 5701 73308167 73302467 0.000000e+00 10528.0
1 TraesCS3B01G107900 chr3D 87.177 4999 259 161 1 4786 46968253 46963424 0.000000e+00 5328.0
2 TraesCS3B01G107900 chr3D 84.018 438 49 18 5136 5563 42498690 42499116 8.900000e-108 401.0
3 TraesCS3B01G107900 chr3A 86.741 2964 132 79 1 2810 58688167 58685311 0.000000e+00 3055.0
4 TraesCS3B01G107900 chr3A 87.157 1129 74 40 3725 4837 58684116 58683043 0.000000e+00 1216.0
5 TraesCS3B01G107900 chr3A 89.655 522 24 6 3215 3706 58684693 58684172 6.230000e-179 638.0
6 TraesCS3B01G107900 chr3A 88.544 419 23 13 2815 3213 58685224 58684811 8.590000e-133 484.0
7 TraesCS3B01G107900 chr3A 83.023 430 60 8 5137 5563 172748686 172748267 1.500000e-100 377.0
8 TraesCS3B01G107900 chr3A 95.708 233 10 0 3944 4176 58071532 58071300 5.390000e-100 375.0
9 TraesCS3B01G107900 chr3A 81.595 489 38 21 4251 4727 58071300 58070852 1.950000e-94 357.0
10 TraesCS3B01G107900 chr3A 83.333 210 27 5 4631 4835 58680693 58680487 2.710000e-43 187.0
11 TraesCS3B01G107900 chr3A 84.615 169 18 4 4454 4618 58680929 58680765 1.640000e-35 161.0
12 TraesCS3B01G107900 chr7D 79.298 826 111 35 4888 5701 637149520 637148743 1.820000e-144 523.0
13 TraesCS3B01G107900 chr7D 81.197 585 62 22 5124 5701 401848264 401847721 1.470000e-115 427.0
14 TraesCS3B01G107900 chr7D 82.240 366 62 3 3939 4303 197150540 197150903 4.290000e-81 313.0
15 TraesCS3B01G107900 chr5D 80.792 682 102 18 4888 5563 396382682 396382024 1.830000e-139 507.0
16 TraesCS3B01G107900 chr5D 82.555 407 38 12 5300 5701 529052410 529052032 1.530000e-85 327.0
17 TraesCS3B01G107900 chr5D 90.816 98 6 1 1484 1581 545286733 545286639 1.670000e-25 128.0
18 TraesCS3B01G107900 chr1A 78.675 830 109 30 4886 5701 568124214 568124989 1.850000e-134 490.0
19 TraesCS3B01G107900 chr1A 92.982 171 10 2 2589 2758 117889715 117889546 1.230000e-61 248.0
20 TraesCS3B01G107900 chr7B 79.568 695 105 28 4884 5563 579828323 579828995 4.020000e-126 462.0
21 TraesCS3B01G107900 chr7B 81.148 366 66 3 3939 4303 161447874 161448237 2.010000e-74 291.0
22 TraesCS3B01G107900 chr2D 77.858 831 123 35 4886 5700 630084731 630085516 5.210000e-125 459.0
23 TraesCS3B01G107900 chr2D 79.503 322 31 13 5381 5701 474638542 474638829 4.510000e-46 196.0
24 TraesCS3B01G107900 chr2A 82.514 549 55 17 5158 5701 14936602 14937114 1.460000e-120 444.0
25 TraesCS3B01G107900 chr4A 77.506 818 124 31 4894 5701 647183561 647184328 2.440000e-118 436.0
26 TraesCS3B01G107900 chr4A 79.335 571 72 27 5136 5701 705754670 705754141 5.430000e-95 359.0
27 TraesCS3B01G107900 chr6D 81.514 568 64 22 5137 5701 158982002 158981473 4.080000e-116 429.0
28 TraesCS3B01G107900 chr6D 77.231 549 95 17 4888 5428 446918693 446918167 1.550000e-75 294.0
29 TraesCS3B01G107900 chr5A 83.105 438 55 16 5138 5563 680630241 680630671 1.160000e-101 381.0
30 TraesCS3B01G107900 chr7A 82.240 366 62 3 3939 4303 206582250 206582613 4.290000e-81 313.0
31 TraesCS3B01G107900 chr2B 80.397 403 46 16 5301 5701 629488013 629488384 5.630000e-70 276.0
32 TraesCS3B01G107900 chr5B 78.982 452 57 20 5255 5701 78314386 78314804 2.020000e-69 274.0
33 TraesCS3B01G107900 chr1D 93.064 173 10 2 2587 2758 111514650 111514479 9.480000e-63 252.0
34 TraesCS3B01G107900 chr6B 78.118 457 50 25 4947 5365 590135946 590135502 1.590000e-60 244.0
35 TraesCS3B01G107900 chr1B 91.379 174 13 2 2587 2759 170515218 170515046 2.660000e-58 237.0
36 TraesCS3B01G107900 chr1B 81.063 301 28 12 5402 5701 50361717 50361445 4.470000e-51 213.0
37 TraesCS3B01G107900 chrUn 77.326 172 23 7 4888 5057 306535047 306534890 2.830000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G107900 chr3B 73302467 73308167 5700 True 10528.000000 10528 100.000000 1 5701 1 chr3B.!!$R1 5700
1 TraesCS3B01G107900 chr3D 46963424 46968253 4829 True 5328.000000 5328 87.177000 1 4786 1 chr3D.!!$R1 4785
2 TraesCS3B01G107900 chr3A 58680487 58688167 7680 True 956.833333 3055 86.674167 1 4837 6 chr3A.!!$R3 4836
3 TraesCS3B01G107900 chr3A 58070852 58071532 680 True 366.000000 375 88.651500 3944 4727 2 chr3A.!!$R2 783
4 TraesCS3B01G107900 chr7D 637148743 637149520 777 True 523.000000 523 79.298000 4888 5701 1 chr7D.!!$R2 813
5 TraesCS3B01G107900 chr7D 401847721 401848264 543 True 427.000000 427 81.197000 5124 5701 1 chr7D.!!$R1 577
6 TraesCS3B01G107900 chr5D 396382024 396382682 658 True 507.000000 507 80.792000 4888 5563 1 chr5D.!!$R1 675
7 TraesCS3B01G107900 chr1A 568124214 568124989 775 False 490.000000 490 78.675000 4886 5701 1 chr1A.!!$F1 815
8 TraesCS3B01G107900 chr7B 579828323 579828995 672 False 462.000000 462 79.568000 4884 5563 1 chr7B.!!$F2 679
9 TraesCS3B01G107900 chr2D 630084731 630085516 785 False 459.000000 459 77.858000 4886 5700 1 chr2D.!!$F2 814
10 TraesCS3B01G107900 chr2A 14936602 14937114 512 False 444.000000 444 82.514000 5158 5701 1 chr2A.!!$F1 543
11 TraesCS3B01G107900 chr4A 647183561 647184328 767 False 436.000000 436 77.506000 4894 5701 1 chr4A.!!$F1 807
12 TraesCS3B01G107900 chr4A 705754141 705754670 529 True 359.000000 359 79.335000 5136 5701 1 chr4A.!!$R1 565
13 TraesCS3B01G107900 chr6D 158981473 158982002 529 True 429.000000 429 81.514000 5137 5701 1 chr6D.!!$R1 564
14 TraesCS3B01G107900 chr6D 446918167 446918693 526 True 294.000000 294 77.231000 4888 5428 1 chr6D.!!$R2 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 947 0.035458 CAGGGGCGTGTCTTTCTCTT 59.965 55.0 0.00 0.00 0.00 2.85 F
2513 2694 0.029834 CAGTGGCATTCATTAGCGCC 59.970 55.0 2.29 0.00 45.11 6.53 F
4313 4814 0.035056 ACTGCCCCTAGTACGTACGT 60.035 55.0 25.98 25.98 0.00 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2531 2712 0.103572 GTCCATGCCATTGCCATCAC 59.896 55.0 0.0 0.00 36.33 3.06 R
4469 4989 0.030369 ATAGGATCGACGTCGTTGCC 59.970 55.0 34.4 29.95 40.80 4.52 R
5151 5703 0.234884 GGAAGCAAAACCGTGACTCG 59.765 55.0 0.0 0.00 39.52 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 44 3.435671 GTGCCGTGCTTAGTTACTTTGAT 59.564 43.478 0.00 0.00 0.00 2.57
98 104 1.375523 ACCAAGCAACCGGATCGAC 60.376 57.895 9.46 0.00 0.00 4.20
121 127 3.054166 ACTTTAAATTTGGCCGCGAAAC 58.946 40.909 8.23 0.00 0.00 2.78
122 128 2.795175 TTAAATTTGGCCGCGAAACA 57.205 40.000 8.23 0.00 0.00 2.83
123 129 2.795175 TAAATTTGGCCGCGAAACAA 57.205 40.000 8.23 6.85 0.00 2.83
124 130 1.941325 AAATTTGGCCGCGAAACAAA 58.059 40.000 19.51 19.51 38.33 2.83
129 135 1.082104 GGCCGCGAAACAAAGTGAG 60.082 57.895 8.23 0.00 0.00 3.51
142 148 5.130292 ACAAAGTGAGCAATGATCAAAGG 57.870 39.130 1.60 0.00 26.97 3.11
143 149 4.586001 ACAAAGTGAGCAATGATCAAAGGT 59.414 37.500 1.60 0.07 26.97 3.50
144 150 4.778534 AAGTGAGCAATGATCAAAGGTG 57.221 40.909 1.60 0.00 26.97 4.00
145 151 2.490903 AGTGAGCAATGATCAAAGGTGC 59.509 45.455 1.60 7.68 35.41 5.01
147 153 2.229543 TGAGCAATGATCAAAGGTGCAC 59.770 45.455 19.76 8.80 37.68 4.57
148 154 1.547372 AGCAATGATCAAAGGTGCACC 59.453 47.619 29.22 29.22 37.68 5.01
149 155 1.273048 GCAATGATCAAAGGTGCACCA 59.727 47.619 36.39 17.55 38.89 4.17
150 156 2.927871 GCAATGATCAAAGGTGCACCAC 60.928 50.000 36.39 19.30 38.89 4.16
151 157 1.167851 ATGATCAAAGGTGCACCACG 58.832 50.000 36.39 23.39 38.89 4.94
152 158 0.179032 TGATCAAAGGTGCACCACGT 60.179 50.000 36.39 19.06 38.89 4.49
153 159 1.070914 TGATCAAAGGTGCACCACGTA 59.929 47.619 36.39 19.66 38.89 3.57
154 160 1.463444 GATCAAAGGTGCACCACGTAC 59.537 52.381 36.39 18.76 38.89 3.67
155 161 0.876777 TCAAAGGTGCACCACGTACG 60.877 55.000 36.39 15.01 38.89 3.67
157 163 2.926901 AAAGGTGCACCACGTACGCA 62.927 55.000 36.39 1.07 38.89 5.24
191 201 7.729431 TGATCTTTGATAGTCTCATCTGGATCT 59.271 37.037 0.00 0.00 32.72 2.75
194 204 6.897706 TTGATAGTCTCATCTGGATCTGAG 57.102 41.667 3.81 3.81 40.20 3.35
322 362 3.440522 GGAAGCTACAAGGAAGCGATTTT 59.559 43.478 0.00 0.00 44.87 1.82
346 386 0.833834 ATGGCGGACAGGGATAGGAG 60.834 60.000 0.00 0.00 0.00 3.69
484 547 0.958822 TTCCAAAGGAAAAGCTCGCC 59.041 50.000 0.00 0.00 38.93 5.54
487 550 1.606601 AAAGGAAAAGCTCGCCCCC 60.607 57.895 0.00 0.00 0.00 5.40
546 609 3.709768 GCGATGCGATGCGATGCT 61.710 61.111 0.00 0.00 0.00 3.79
686 780 1.539388 TGCTTTGGTTGCAGTAATCCG 59.461 47.619 0.00 0.00 35.31 4.18
712 810 0.881796 CAGCCCCGACCTTTCTTTTC 59.118 55.000 0.00 0.00 0.00 2.29
713 811 0.476771 AGCCCCGACCTTTCTTTTCA 59.523 50.000 0.00 0.00 0.00 2.69
714 812 1.075536 AGCCCCGACCTTTCTTTTCAT 59.924 47.619 0.00 0.00 0.00 2.57
805 919 2.519441 CATGGCTAGGCATGGGCT 59.481 61.111 38.66 16.28 42.39 5.19
807 921 3.142770 ATGGCTAGGCATGGGCTGG 62.143 63.158 29.27 0.38 39.30 4.85
828 942 4.660938 GGGCAGGGGCGTGTCTTT 62.661 66.667 0.00 0.00 42.47 2.52
829 943 3.056328 GGCAGGGGCGTGTCTTTC 61.056 66.667 0.00 0.00 42.47 2.62
830 944 2.032681 GCAGGGGCGTGTCTTTCT 59.967 61.111 0.00 0.00 0.00 2.52
831 945 2.035442 GCAGGGGCGTGTCTTTCTC 61.035 63.158 0.00 0.00 0.00 2.87
832 946 1.674057 CAGGGGCGTGTCTTTCTCT 59.326 57.895 0.00 0.00 0.00 3.10
833 947 0.035458 CAGGGGCGTGTCTTTCTCTT 59.965 55.000 0.00 0.00 0.00 2.85
834 948 0.765510 AGGGGCGTGTCTTTCTCTTT 59.234 50.000 0.00 0.00 0.00 2.52
835 949 1.157585 GGGGCGTGTCTTTCTCTTTC 58.842 55.000 0.00 0.00 0.00 2.62
836 950 1.157585 GGGCGTGTCTTTCTCTTTCC 58.842 55.000 0.00 0.00 0.00 3.13
837 951 1.542547 GGGCGTGTCTTTCTCTTTCCA 60.543 52.381 0.00 0.00 0.00 3.53
838 952 2.427506 GGCGTGTCTTTCTCTTTCCAT 58.572 47.619 0.00 0.00 0.00 3.41
839 953 2.814336 GGCGTGTCTTTCTCTTTCCATT 59.186 45.455 0.00 0.00 0.00 3.16
840 954 3.253432 GGCGTGTCTTTCTCTTTCCATTT 59.747 43.478 0.00 0.00 0.00 2.32
841 955 4.467735 GCGTGTCTTTCTCTTTCCATTTC 58.532 43.478 0.00 0.00 0.00 2.17
842 956 4.214332 GCGTGTCTTTCTCTTTCCATTTCT 59.786 41.667 0.00 0.00 0.00 2.52
843 957 5.615764 GCGTGTCTTTCTCTTTCCATTTCTC 60.616 44.000 0.00 0.00 0.00 2.87
863 977 1.362406 CTCTCCTCGGGAAAAAGCGC 61.362 60.000 0.00 0.00 0.00 5.92
915 1034 3.583806 ACTCAACTTGAAGCTCATCTCG 58.416 45.455 0.00 0.00 0.00 4.04
1091 1225 2.146724 CCACACTCCACCTCCACCA 61.147 63.158 0.00 0.00 0.00 4.17
1130 1265 2.582728 GAGTAGTCTCTCTCGACCGA 57.417 55.000 0.00 0.00 37.68 4.69
1131 1266 2.466846 GAGTAGTCTCTCTCGACCGAG 58.533 57.143 12.77 12.77 43.21 4.63
1248 1383 1.672145 GCAACAACGACTCTACTCCCC 60.672 57.143 0.00 0.00 0.00 4.81
1253 1388 3.053842 ACAACGACTCTACTCCCCATCTA 60.054 47.826 0.00 0.00 0.00 1.98
1254 1389 3.211718 ACGACTCTACTCCCCATCTAC 57.788 52.381 0.00 0.00 0.00 2.59
1255 1390 2.144730 CGACTCTACTCCCCATCTACG 58.855 57.143 0.00 0.00 0.00 3.51
1270 1405 2.762745 TCTACGACAAGGTTTTGAGGC 58.237 47.619 0.00 0.00 37.73 4.70
1276 1411 1.535462 ACAAGGTTTTGAGGCGAATCG 59.465 47.619 0.00 0.00 37.73 3.34
1365 1503 4.355720 TCCCCTTGCTGCTGCTGG 62.356 66.667 17.00 16.86 40.48 4.85
1400 1538 4.874977 TGCGCGTTGTCGGTGTCA 62.875 61.111 8.43 0.00 37.56 3.58
1477 1615 4.914420 CGAGCTGCGAGCCTACCG 62.914 72.222 0.00 0.00 43.77 4.02
1490 1628 3.071837 TACCGGAGCATCGTGGCA 61.072 61.111 9.46 0.00 34.98 4.92
1511 1649 4.002982 CACGGATGGACAAGATGAAGAAA 58.997 43.478 0.00 0.00 0.00 2.52
1559 1697 1.196127 GGCTTTGCTTCTTTTGCATGC 59.804 47.619 11.82 11.82 40.34 4.06
1563 1701 1.080298 GCTTCTTTTGCATGCGCCT 60.080 52.632 14.09 0.00 37.32 5.52
1566 1704 1.808531 TTCTTTTGCATGCGCCTGCT 61.809 50.000 32.52 1.05 42.75 4.24
1567 1705 1.804326 CTTTTGCATGCGCCTGCTC 60.804 57.895 32.52 10.74 42.75 4.26
1570 1708 2.203972 TTTGCATGCGCCTGCTCTTC 62.204 55.000 32.52 9.38 42.75 2.87
1593 1731 1.279846 GTTTGACCCCCGACCTCAATA 59.720 52.381 0.00 0.00 0.00 1.90
1617 1755 1.742411 CGACCACCTTGTTCGCCATAT 60.742 52.381 0.00 0.00 0.00 1.78
1625 1763 5.345741 CACCTTGTTCGCCATATTTTTCTTG 59.654 40.000 0.00 0.00 0.00 3.02
1627 1765 5.345741 CCTTGTTCGCCATATTTTTCTTGTG 59.654 40.000 0.00 0.00 0.00 3.33
1628 1766 4.804108 TGTTCGCCATATTTTTCTTGTGG 58.196 39.130 0.00 0.00 0.00 4.17
1644 1789 3.281341 TGTGGCAATGTTTGACGAATC 57.719 42.857 0.00 0.00 43.38 2.52
1761 1906 0.833287 CAGAGGTCGTCCATCCCATT 59.167 55.000 0.51 0.00 35.89 3.16
1763 1908 0.830648 GAGGTCGTCCATCCCATTCA 59.169 55.000 0.51 0.00 35.89 2.57
1767 1912 1.417890 GTCGTCCATCCCATTCATCCT 59.582 52.381 0.00 0.00 0.00 3.24
1768 1913 1.694150 TCGTCCATCCCATTCATCCTC 59.306 52.381 0.00 0.00 0.00 3.71
1769 1914 1.271054 CGTCCATCCCATTCATCCTCC 60.271 57.143 0.00 0.00 0.00 4.30
1770 1915 1.059098 TCCATCCCATTCATCCTCCG 58.941 55.000 0.00 0.00 0.00 4.63
1772 1917 1.977854 CCATCCCATTCATCCTCCGTA 59.022 52.381 0.00 0.00 0.00 4.02
1785 1949 2.100916 TCCTCCGTAGCTGCATTCTTAC 59.899 50.000 1.02 0.00 0.00 2.34
1788 1952 4.184629 CTCCGTAGCTGCATTCTTACTTT 58.815 43.478 1.02 0.00 0.00 2.66
1809 1973 3.247006 TCTGTCTTTTACCGATCAGCC 57.753 47.619 0.00 0.00 0.00 4.85
1826 1990 3.350612 CGGCCGGCGTTCTGAAAA 61.351 61.111 22.54 0.00 0.00 2.29
1827 1991 2.561373 GGCCGGCGTTCTGAAAAG 59.439 61.111 22.54 0.00 0.00 2.27
1833 1997 1.394917 CGGCGTTCTGAAAAGGAGATG 59.605 52.381 0.00 0.00 0.00 2.90
1836 2000 3.596214 GCGTTCTGAAAAGGAGATGGTA 58.404 45.455 0.00 0.00 0.00 3.25
1838 2002 3.933332 CGTTCTGAAAAGGAGATGGTACC 59.067 47.826 4.43 4.43 0.00 3.34
1839 2003 4.562757 CGTTCTGAAAAGGAGATGGTACCA 60.563 45.833 18.99 18.99 0.00 3.25
2084 2253 1.647545 CGACGGCCACGAGGTACTTA 61.648 60.000 13.04 0.00 41.55 2.24
2110 2282 1.553248 ACGCCCAGCTGATAACTAACA 59.447 47.619 17.39 0.00 0.00 2.41
2111 2283 1.933853 CGCCCAGCTGATAACTAACAC 59.066 52.381 17.39 0.00 0.00 3.32
2112 2284 1.933853 GCCCAGCTGATAACTAACACG 59.066 52.381 17.39 0.00 0.00 4.49
2146 2318 6.310711 CGATCTCATCAATCGTCATCATCAAT 59.689 38.462 0.00 0.00 40.78 2.57
2147 2319 7.487189 CGATCTCATCAATCGTCATCATCAATA 59.513 37.037 0.00 0.00 40.78 1.90
2148 2320 7.880059 TCTCATCAATCGTCATCATCAATAC 57.120 36.000 0.00 0.00 0.00 1.89
2149 2321 6.870439 TCTCATCAATCGTCATCATCAATACC 59.130 38.462 0.00 0.00 0.00 2.73
2150 2322 5.634859 TCATCAATCGTCATCATCAATACCG 59.365 40.000 0.00 0.00 0.00 4.02
2151 2323 5.195001 TCAATCGTCATCATCAATACCGA 57.805 39.130 0.00 0.00 0.00 4.69
2152 2324 5.222631 TCAATCGTCATCATCAATACCGAG 58.777 41.667 0.00 0.00 0.00 4.63
2272 2453 2.233271 GCGACCAAATCATGATCCCAT 58.767 47.619 9.06 0.00 0.00 4.00
2383 2564 1.866601 CGCGCACAGGATATTGATTGA 59.133 47.619 8.75 0.00 0.00 2.57
2510 2691 2.223433 GCAGTCAGTGGCATTCATTAGC 60.223 50.000 0.00 0.00 0.00 3.09
2511 2692 2.031314 CAGTCAGTGGCATTCATTAGCG 59.969 50.000 0.00 0.00 0.00 4.26
2512 2693 1.016627 TCAGTGGCATTCATTAGCGC 58.983 50.000 0.00 0.00 0.00 5.92
2513 2694 0.029834 CAGTGGCATTCATTAGCGCC 59.970 55.000 2.29 0.00 45.11 6.53
2516 2697 2.050985 GCATTCATTAGCGCCCGC 60.051 61.111 2.29 4.20 42.33 6.13
2533 2714 3.399770 CCCGTACGTGCGTGTGTG 61.400 66.667 24.09 8.66 0.00 3.82
2534 2715 2.353723 CCGTACGTGCGTGTGTGA 60.354 61.111 24.09 0.00 0.00 3.58
2535 2716 1.731613 CCGTACGTGCGTGTGTGAT 60.732 57.895 24.09 0.00 0.00 3.06
2536 2717 1.410711 CGTACGTGCGTGTGTGATG 59.589 57.895 18.32 0.00 0.00 3.07
2537 2718 1.779061 GTACGTGCGTGTGTGATGG 59.221 57.895 7.55 0.00 0.00 3.51
2538 2719 2.024868 TACGTGCGTGTGTGATGGC 61.025 57.895 7.55 0.00 0.00 4.40
2539 2720 2.701163 TACGTGCGTGTGTGATGGCA 62.701 55.000 7.55 0.00 0.00 4.92
2568 2755 3.718434 TGGACCTTAGCTTGATGATGGAT 59.282 43.478 0.00 0.00 0.00 3.41
2762 2949 3.870955 CCGGCTGGCAGGTATCTA 58.129 61.111 17.64 0.00 0.00 1.98
2763 2950 2.133195 CCGGCTGGCAGGTATCTAA 58.867 57.895 17.64 0.00 0.00 2.10
2767 2954 1.338200 GGCTGGCAGGTATCTAATCCG 60.338 57.143 17.64 0.00 0.00 4.18
2810 2997 7.331026 TGCATGCAAACTACTCTTACTATTCT 58.669 34.615 20.30 0.00 0.00 2.40
2812 2999 8.756864 GCATGCAAACTACTCTTACTATTCTAC 58.243 37.037 14.21 0.00 0.00 2.59
2844 3113 6.425417 AGAACATTTTTCTTCTTCTCGAGACC 59.575 38.462 16.36 0.00 33.02 3.85
2870 3139 6.900568 ACGAAATCACATTTGAAAGCAAAA 57.099 29.167 0.00 0.00 46.19 2.44
2871 3140 6.936374 ACGAAATCACATTTGAAAGCAAAAG 58.064 32.000 0.00 0.00 46.19 2.27
2875 3144 7.966246 AATCACATTTGAAAGCAAAAGCATA 57.034 28.000 0.00 0.00 46.19 3.14
2878 3147 6.864685 TCACATTTGAAAGCAAAAGCATAGAG 59.135 34.615 0.00 0.00 46.19 2.43
2959 3228 4.762289 ATAGTGCAGGAAGTTAAGGAGG 57.238 45.455 0.00 0.00 0.00 4.30
2972 3241 4.282195 AGTTAAGGAGGTGAGTGAGTTGAG 59.718 45.833 0.00 0.00 0.00 3.02
2974 3243 2.243810 AGGAGGTGAGTGAGTTGAGAC 58.756 52.381 0.00 0.00 0.00 3.36
3022 3300 6.146184 GCTGCAAAGCGATCTAGTTATAATGA 59.854 38.462 0.00 0.00 0.00 2.57
3051 3344 1.493311 GCAGAACGCGTTCTTCAGG 59.507 57.895 43.09 33.22 46.95 3.86
3052 3345 1.493311 CAGAACGCGTTCTTCAGGC 59.507 57.895 43.09 21.97 46.95 4.85
3053 3346 1.069090 AGAACGCGTTCTTCAGGCA 59.931 52.632 40.88 0.00 46.95 4.75
3054 3347 0.946221 AGAACGCGTTCTTCAGGCAG 60.946 55.000 40.88 0.00 46.95 4.85
3141 3434 0.516001 CTAGCAATGGCATAGCAGCG 59.484 55.000 0.00 0.00 44.61 5.18
3146 3439 1.442526 AATGGCATAGCAGCGCAGAC 61.443 55.000 11.47 0.00 34.64 3.51
3176 3469 2.182537 GGCCCTTGCTTGAATGCG 59.817 61.111 0.00 0.00 37.74 4.73
3177 3470 2.639327 GGCCCTTGCTTGAATGCGT 61.639 57.895 0.00 0.00 37.74 5.24
3195 3489 1.694169 TGCTTCATCCCTCCCTCCC 60.694 63.158 0.00 0.00 0.00 4.30
3213 3619 3.639094 CTCCCTCCCTAGTCACATTACTG 59.361 52.174 0.00 0.00 0.00 2.74
3221 3631 4.212847 CCTAGTCACATTACTGCATGCATC 59.787 45.833 22.97 3.74 0.00 3.91
3232 3642 3.321968 ACTGCATGCATCGAGGATAAGTA 59.678 43.478 22.97 0.00 0.00 2.24
3284 3698 5.255710 TCAGATTAGCAGAGTAGTCAAGC 57.744 43.478 0.00 3.72 0.00 4.01
3384 3801 3.126001 TGTCTCCTTGCAGTAAACTGG 57.874 47.619 11.86 0.00 43.94 4.00
3449 3872 8.040727 TGCATGTTGACTGTGTAGTATAGAAAT 58.959 33.333 0.00 0.00 37.25 2.17
3560 3992 2.420722 TGTTGGGTTTGAAACGAGTGTC 59.579 45.455 1.53 0.00 0.00 3.67
3581 4017 2.287788 CGTAGTACGTGGTGGTCAAACT 60.288 50.000 14.62 0.00 36.74 2.66
3583 4019 1.202604 AGTACGTGGTGGTCAAACTGG 60.203 52.381 0.00 0.00 0.00 4.00
3613 4068 5.710984 CAGTCCATACGTGTTAACTCTCTT 58.289 41.667 7.22 0.00 0.00 2.85
3624 4079 5.463724 GTGTTAACTCTCTTCACTGTTCCTG 59.536 44.000 7.22 0.00 0.00 3.86
3649 4104 2.621070 TCTTTTAGGTGAGCCCTCAGT 58.379 47.619 0.00 0.00 44.81 3.41
3715 4177 3.493767 AACTCCTCCTCTCAACCAAAC 57.506 47.619 0.00 0.00 0.00 2.93
3716 4178 2.408565 ACTCCTCCTCTCAACCAAACA 58.591 47.619 0.00 0.00 0.00 2.83
3717 4179 2.104963 ACTCCTCCTCTCAACCAAACAC 59.895 50.000 0.00 0.00 0.00 3.32
3718 4180 2.370189 CTCCTCCTCTCAACCAAACACT 59.630 50.000 0.00 0.00 0.00 3.55
3719 4181 2.104792 TCCTCCTCTCAACCAAACACTG 59.895 50.000 0.00 0.00 0.00 3.66
3722 4215 4.058817 CTCCTCTCAACCAAACACTGTAC 58.941 47.826 0.00 0.00 0.00 2.90
3774 4270 4.961622 GAAGTGTCGATGCATGCG 57.038 55.556 14.09 8.11 0.00 4.73
3959 4460 3.362797 CACTGGTGGCTGCAGCTG 61.363 66.667 35.82 22.15 41.70 4.24
4181 4682 1.003718 GGACAACAACCTCCTCCCG 60.004 63.158 0.00 0.00 0.00 5.14
4184 4685 2.852075 AACAACCTCCTCCCGGCA 60.852 61.111 0.00 0.00 0.00 5.69
4312 4813 0.379669 CACTGCCCCTAGTACGTACG 59.620 60.000 19.49 15.01 0.00 3.67
4313 4814 0.035056 ACTGCCCCTAGTACGTACGT 60.035 55.000 25.98 25.98 0.00 3.57
4355 4862 2.269241 GGTGCCGGAGAAGAAGGG 59.731 66.667 5.05 0.00 0.00 3.95
4356 4863 2.291043 GGTGCCGGAGAAGAAGGGA 61.291 63.158 5.05 0.00 0.00 4.20
4357 4864 1.219393 GTGCCGGAGAAGAAGGGAG 59.781 63.158 5.05 0.00 0.00 4.30
4358 4865 1.229209 TGCCGGAGAAGAAGGGAGT 60.229 57.895 5.05 0.00 0.00 3.85
4359 4866 0.040646 TGCCGGAGAAGAAGGGAGTA 59.959 55.000 5.05 0.00 0.00 2.59
4360 4867 0.460722 GCCGGAGAAGAAGGGAGTAC 59.539 60.000 5.05 0.00 0.00 2.73
4361 4868 1.848652 CCGGAGAAGAAGGGAGTACA 58.151 55.000 0.00 0.00 0.00 2.90
4362 4869 1.477295 CCGGAGAAGAAGGGAGTACAC 59.523 57.143 0.00 0.00 0.00 2.90
4367 4874 2.761208 AGAAGAAGGGAGTACACATCCG 59.239 50.000 0.00 0.00 37.75 4.18
4375 4882 2.287069 GGAGTACACATCCGTCGATCTG 60.287 54.545 0.00 0.00 0.00 2.90
4417 4931 8.668510 ACTGCTGATTGATCGTTAATTCTTAT 57.331 30.769 0.00 0.00 0.00 1.73
4418 4932 9.764363 ACTGCTGATTGATCGTTAATTCTTATA 57.236 29.630 0.00 0.00 0.00 0.98
4451 4971 5.704445 CGTACGTACGTGATGATCATTAC 57.296 43.478 33.95 18.24 44.13 1.89
4467 4987 1.626686 TTACGTACCAAGGGAACGGA 58.373 50.000 16.92 8.63 40.81 4.69
4469 4989 1.444895 CGTACCAAGGGAACGGACG 60.445 63.158 7.99 0.00 33.13 4.79
4507 5031 7.704578 TCCTATATAGCTAGCTAGTGGTTTG 57.295 40.000 27.42 13.45 31.45 2.93
4521 5045 0.794473 GGTTTGTCGATCGGGTTGAC 59.206 55.000 16.41 6.09 40.99 3.18
4528 5052 1.129879 CGATCGGGTTGACACGTACG 61.130 60.000 15.01 15.01 44.39 3.67
4531 5055 0.237235 TCGGGTTGACACGTACGTAC 59.763 55.000 22.34 15.32 44.39 3.67
4546 5070 2.049341 TACGTTGCGCGGTGCTTA 60.049 55.556 15.31 0.00 46.63 3.09
4558 5082 2.529151 CGGTGCTTATTTTGATGTGGC 58.471 47.619 0.00 0.00 0.00 5.01
4563 5087 4.081406 TGCTTATTTTGATGTGGCTGAGT 58.919 39.130 0.00 0.00 0.00 3.41
4568 5092 1.527034 TTGATGTGGCTGAGTCTTGC 58.473 50.000 0.00 0.00 0.00 4.01
4570 5094 1.085091 GATGTGGCTGAGTCTTGCTG 58.915 55.000 8.22 0.00 0.00 4.41
4576 5100 2.099592 TGGCTGAGTCTTGCTGTTTTTG 59.900 45.455 8.22 0.00 0.00 2.44
4577 5101 2.099756 GGCTGAGTCTTGCTGTTTTTGT 59.900 45.455 8.22 0.00 0.00 2.83
4614 5138 4.149617 GCTACGTAGCGTGTATACATGAG 58.850 47.826 30.10 14.84 41.39 2.90
4615 5139 4.084171 GCTACGTAGCGTGTATACATGAGA 60.084 45.833 30.10 11.37 41.39 3.27
4668 5196 7.275183 TGTGGATTTGTGATCCTCTTATGTAG 58.725 38.462 6.61 0.00 38.95 2.74
4670 5198 8.421784 GTGGATTTGTGATCCTCTTATGTAGTA 58.578 37.037 6.61 0.00 38.95 1.82
4682 5210 7.174772 TCCTCTTATGTAGTACGTGTGTTGTAA 59.825 37.037 5.21 0.00 0.00 2.41
4683 5211 7.972277 CCTCTTATGTAGTACGTGTGTTGTAAT 59.028 37.037 5.21 0.00 0.00 1.89
4694 5222 7.949903 ACGTGTGTTGTAATATAGTGTTTCA 57.050 32.000 0.00 0.00 0.00 2.69
4695 5223 8.367943 ACGTGTGTTGTAATATAGTGTTTCAA 57.632 30.769 0.00 0.00 0.00 2.69
4734 5262 8.430063 GCTACAATTGATGTTCAAAATGACAAG 58.570 33.333 13.59 7.76 43.63 3.16
4767 5295 5.343307 TCATGAACTGATGAGGATTTCGA 57.657 39.130 0.00 0.00 0.00 3.71
4776 5304 1.552348 GAGGATTTCGAGGATGCGCG 61.552 60.000 0.00 0.00 0.00 6.86
4781 5309 1.351430 TTTCGAGGATGCGCGTGAAG 61.351 55.000 6.97 0.00 0.00 3.02
4797 5325 3.443976 GTGAAGAAGAAAAGGCGCAAAA 58.556 40.909 10.83 0.00 0.00 2.44
4802 5330 0.389025 AGAAAAGGCGCAAAACCAGG 59.611 50.000 10.83 0.00 0.00 4.45
4809 5337 0.313987 GCGCAAAACCAGGCTAAACT 59.686 50.000 0.30 0.00 0.00 2.66
4810 5338 1.269569 GCGCAAAACCAGGCTAAACTT 60.270 47.619 0.30 0.00 0.00 2.66
4811 5339 2.801699 GCGCAAAACCAGGCTAAACTTT 60.802 45.455 0.30 0.00 0.00 2.66
4812 5340 2.794350 CGCAAAACCAGGCTAAACTTTG 59.206 45.455 0.00 0.00 0.00 2.77
4813 5341 2.543848 GCAAAACCAGGCTAAACTTTGC 59.456 45.455 15.27 15.27 41.06 3.68
4814 5342 3.791245 CAAAACCAGGCTAAACTTTGCA 58.209 40.909 0.00 0.00 0.00 4.08
4815 5343 3.452755 AAACCAGGCTAAACTTTGCAC 57.547 42.857 0.00 0.00 0.00 4.57
4816 5344 1.328279 ACCAGGCTAAACTTTGCACC 58.672 50.000 0.00 0.00 0.00 5.01
4817 5345 1.133482 ACCAGGCTAAACTTTGCACCT 60.133 47.619 0.00 0.00 0.00 4.00
4818 5346 1.541588 CCAGGCTAAACTTTGCACCTC 59.458 52.381 0.00 0.00 0.00 3.85
4819 5347 1.541588 CAGGCTAAACTTTGCACCTCC 59.458 52.381 0.00 0.00 0.00 4.30
4820 5348 1.144913 AGGCTAAACTTTGCACCTCCA 59.855 47.619 0.00 0.00 0.00 3.86
4821 5349 1.269723 GGCTAAACTTTGCACCTCCAC 59.730 52.381 0.00 0.00 0.00 4.02
4822 5350 1.069227 GCTAAACTTTGCACCTCCACG 60.069 52.381 0.00 0.00 0.00 4.94
4823 5351 2.489971 CTAAACTTTGCACCTCCACGA 58.510 47.619 0.00 0.00 0.00 4.35
4824 5352 1.021968 AAACTTTGCACCTCCACGAC 58.978 50.000 0.00 0.00 0.00 4.34
4825 5353 0.107410 AACTTTGCACCTCCACGACA 60.107 50.000 0.00 0.00 0.00 4.35
4826 5354 0.814010 ACTTTGCACCTCCACGACAC 60.814 55.000 0.00 0.00 0.00 3.67
4827 5355 0.532862 CTTTGCACCTCCACGACACT 60.533 55.000 0.00 0.00 0.00 3.55
4828 5356 0.813610 TTTGCACCTCCACGACACTG 60.814 55.000 0.00 0.00 0.00 3.66
4829 5357 3.044305 GCACCTCCACGACACTGC 61.044 66.667 0.00 0.00 0.00 4.40
4830 5358 2.737180 CACCTCCACGACACTGCT 59.263 61.111 0.00 0.00 0.00 4.24
4831 5359 1.665916 CACCTCCACGACACTGCTG 60.666 63.158 0.00 0.00 0.00 4.41
4832 5360 2.740055 CCTCCACGACACTGCTGC 60.740 66.667 0.00 0.00 0.00 5.25
4833 5361 2.341543 CTCCACGACACTGCTGCT 59.658 61.111 0.00 0.00 0.00 4.24
4834 5362 1.586541 CTCCACGACACTGCTGCTA 59.413 57.895 0.00 0.00 0.00 3.49
4835 5363 0.174389 CTCCACGACACTGCTGCTAT 59.826 55.000 0.00 0.00 0.00 2.97
4836 5364 0.108662 TCCACGACACTGCTGCTATG 60.109 55.000 0.00 1.48 0.00 2.23
4837 5365 1.699656 CCACGACACTGCTGCTATGC 61.700 60.000 0.00 0.00 0.00 3.14
4838 5366 0.738762 CACGACACTGCTGCTATGCT 60.739 55.000 0.00 0.00 0.00 3.79
4839 5367 0.738762 ACGACACTGCTGCTATGCTG 60.739 55.000 0.00 0.00 37.79 4.41
4845 5373 3.275338 GCTGCTATGCTGCCGGTC 61.275 66.667 1.90 0.00 45.42 4.79
4846 5374 2.590007 CTGCTATGCTGCCGGTCC 60.590 66.667 1.90 0.00 0.00 4.46
4847 5375 3.390183 CTGCTATGCTGCCGGTCCA 62.390 63.158 1.90 0.00 0.00 4.02
4848 5376 2.124736 GCTATGCTGCCGGTCCAA 60.125 61.111 1.90 0.00 0.00 3.53
4849 5377 2.182842 GCTATGCTGCCGGTCCAAG 61.183 63.158 1.90 0.00 0.00 3.61
4850 5378 1.221840 CTATGCTGCCGGTCCAAGT 59.778 57.895 1.90 0.00 0.00 3.16
4851 5379 0.392998 CTATGCTGCCGGTCCAAGTT 60.393 55.000 1.90 0.00 0.00 2.66
4852 5380 0.676466 TATGCTGCCGGTCCAAGTTG 60.676 55.000 1.90 0.00 0.00 3.16
4853 5381 2.281484 GCTGCCGGTCCAAGTTGA 60.281 61.111 3.87 0.00 0.00 3.18
4854 5382 1.896660 GCTGCCGGTCCAAGTTGAA 60.897 57.895 3.87 0.00 0.00 2.69
4855 5383 1.856265 GCTGCCGGTCCAAGTTGAAG 61.856 60.000 3.87 0.00 0.00 3.02
4856 5384 1.228124 TGCCGGTCCAAGTTGAAGG 60.228 57.895 3.87 3.19 0.00 3.46
4857 5385 1.228154 GCCGGTCCAAGTTGAAGGT 60.228 57.895 3.87 0.00 0.00 3.50
4858 5386 0.822121 GCCGGTCCAAGTTGAAGGTT 60.822 55.000 3.87 0.00 0.00 3.50
4859 5387 1.543871 GCCGGTCCAAGTTGAAGGTTA 60.544 52.381 3.87 0.00 0.00 2.85
4860 5388 2.853705 CCGGTCCAAGTTGAAGGTTAA 58.146 47.619 3.87 0.00 0.00 2.01
4861 5389 2.551032 CCGGTCCAAGTTGAAGGTTAAC 59.449 50.000 3.87 0.00 0.00 2.01
4862 5390 2.222445 CGGTCCAAGTTGAAGGTTAACG 59.778 50.000 3.87 0.00 33.39 3.18
4863 5391 2.031420 GGTCCAAGTTGAAGGTTAACGC 60.031 50.000 3.87 0.00 33.39 4.84
4864 5392 2.614983 GTCCAAGTTGAAGGTTAACGCA 59.385 45.455 3.87 0.00 33.39 5.24
4865 5393 3.252458 GTCCAAGTTGAAGGTTAACGCAT 59.748 43.478 3.87 0.00 33.39 4.73
4866 5394 3.886505 TCCAAGTTGAAGGTTAACGCATT 59.113 39.130 3.87 0.00 33.39 3.56
4867 5395 5.049267 GTCCAAGTTGAAGGTTAACGCATTA 60.049 40.000 3.87 0.00 33.39 1.90
4868 5396 5.708230 TCCAAGTTGAAGGTTAACGCATTAT 59.292 36.000 3.87 0.00 33.39 1.28
4869 5397 6.027749 CCAAGTTGAAGGTTAACGCATTATC 58.972 40.000 3.87 0.00 33.39 1.75
4870 5398 5.813080 AGTTGAAGGTTAACGCATTATCC 57.187 39.130 0.00 0.00 33.39 2.59
4871 5399 5.497474 AGTTGAAGGTTAACGCATTATCCT 58.503 37.500 0.00 0.00 40.74 3.24
4872 5400 5.585047 AGTTGAAGGTTAACGCATTATCCTC 59.415 40.000 2.78 0.00 38.88 3.71
4873 5401 5.353394 TGAAGGTTAACGCATTATCCTCT 57.647 39.130 2.78 0.00 38.88 3.69
4874 5402 6.474140 TGAAGGTTAACGCATTATCCTCTA 57.526 37.500 2.78 0.00 38.88 2.43
4875 5403 6.513180 TGAAGGTTAACGCATTATCCTCTAG 58.487 40.000 2.78 0.00 38.88 2.43
4876 5404 5.470047 AGGTTAACGCATTATCCTCTAGG 57.530 43.478 0.00 0.00 36.21 3.02
4918 5446 2.552585 TAACGAGCGCTTCTTCGGGG 62.553 60.000 13.26 0.00 0.00 5.73
4937 5465 1.410083 GGGGGCTCACAATGATTAGCA 60.410 52.381 1.40 0.00 36.68 3.49
4943 5471 5.997746 GGGCTCACAATGATTAGCATTACTA 59.002 40.000 0.00 0.00 45.23 1.82
4983 5513 2.736343 CTACGTGTCGTGTTGGGCGA 62.736 60.000 0.00 0.00 41.39 5.54
5209 5783 2.313051 TTTCGCGGGAGTCACAACCA 62.313 55.000 6.13 0.00 0.00 3.67
5231 5808 5.182001 CCATGACTCTCGGAAACAGAAAAAT 59.818 40.000 0.00 0.00 0.00 1.82
5278 5997 1.576421 GAGAGGCACGGTTTTGCTG 59.424 57.895 0.00 0.00 42.56 4.41
5296 6015 1.153997 GTCGAGAGAGGCACGGTTC 60.154 63.158 0.00 0.00 43.49 3.62
5314 6033 1.812922 CTGCTTTCGCGAGAGGCAT 60.813 57.895 25.84 0.00 44.79 4.40
5400 6549 0.865769 GGTTTTGCTTTCGCGAGAGA 59.134 50.000 28.81 12.02 43.69 3.10
5418 6567 1.658994 GACACGGTTGTCCTTTCACA 58.341 50.000 0.00 0.00 45.77 3.58
5429 6578 1.140052 TCCTTTCACAAGAGGCACGAA 59.860 47.619 0.00 0.00 32.93 3.85
5441 6590 4.889427 CACGAATGTGCCTCTCGA 57.111 55.556 0.00 0.00 39.67 4.04
5446 6595 1.798223 CGAATGTGCCTCTCGAAAACA 59.202 47.619 0.00 0.00 34.52 2.83
5452 6601 3.882888 TGTGCCTCTCGAAAACAGAAAAT 59.117 39.130 0.00 0.00 0.00 1.82
5527 7113 1.734117 GCATGGTTGTGCTTTCGCC 60.734 57.895 0.00 0.00 41.82 5.54
5532 7118 1.576421 GTTGTGCTTTCGCCAGAGG 59.424 57.895 0.00 0.00 34.43 3.69
5551 7137 1.374125 CACAACCGTGCCTCATCGA 60.374 57.895 0.00 0.00 36.06 3.59
5552 7138 0.948623 CACAACCGTGCCTCATCGAA 60.949 55.000 0.00 0.00 36.06 3.71
5553 7139 0.250124 ACAACCGTGCCTCATCGAAA 60.250 50.000 0.00 0.00 0.00 3.46
5554 7140 0.871722 CAACCGTGCCTCATCGAAAA 59.128 50.000 0.00 0.00 0.00 2.29
5555 7141 0.872388 AACCGTGCCTCATCGAAAAC 59.128 50.000 0.00 0.00 0.00 2.43
5556 7142 1.289109 ACCGTGCCTCATCGAAAACG 61.289 55.000 0.00 0.00 0.00 3.60
5557 7143 1.011968 CCGTGCCTCATCGAAAACGA 61.012 55.000 0.00 0.00 33.03 3.85
5558 7144 0.787787 CGTGCCTCATCGAAAACGAA 59.212 50.000 0.00 0.00 33.03 3.85
5559 7145 1.193650 CGTGCCTCATCGAAAACGAAA 59.806 47.619 0.00 0.00 33.03 3.46
5560 7146 2.349060 CGTGCCTCATCGAAAACGAAAA 60.349 45.455 0.00 0.00 33.03 2.29
5561 7147 3.623863 GTGCCTCATCGAAAACGAAAAA 58.376 40.909 0.00 0.00 0.00 1.94
5659 8333 1.734465 CGAGAGGCAAGGTTGTGATTC 59.266 52.381 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 35 9.326413 GGATCCTCTTTAATTCGATCAAAGTAA 57.674 33.333 3.84 0.00 32.68 2.24
39 44 6.489022 TCAGATACGGATCCTCTTTAATTCGA 59.511 38.462 10.75 0.00 31.81 3.71
98 104 1.068194 TCGCGGCCAAATTTAAAGTGG 60.068 47.619 6.13 13.89 35.39 4.00
121 127 4.921515 CACCTTTGATCATTGCTCACTTTG 59.078 41.667 0.00 0.00 0.00 2.77
122 128 4.560108 GCACCTTTGATCATTGCTCACTTT 60.560 41.667 0.00 0.00 0.00 2.66
123 129 3.057033 GCACCTTTGATCATTGCTCACTT 60.057 43.478 0.00 0.00 0.00 3.16
124 130 2.490903 GCACCTTTGATCATTGCTCACT 59.509 45.455 0.00 0.00 0.00 3.41
129 135 1.273048 TGGTGCACCTTTGATCATTGC 59.727 47.619 34.75 5.70 36.82 3.56
143 149 2.073037 TACTGTGCGTACGTGGTGCA 62.073 55.000 17.90 2.18 36.02 4.57
144 150 1.372004 TACTGTGCGTACGTGGTGC 60.372 57.895 17.90 0.00 0.00 5.01
145 151 2.427360 GTACTGTGCGTACGTGGTG 58.573 57.895 17.90 7.90 39.15 4.17
157 163 6.374613 TGAGACTATCAAAGATCACGTACTGT 59.625 38.462 0.00 0.00 34.02 3.55
158 164 6.786207 TGAGACTATCAAAGATCACGTACTG 58.214 40.000 0.00 0.00 34.02 2.74
175 185 4.141298 TGAGCTCAGATCCAGATGAGACTA 60.141 45.833 13.74 0.00 44.68 2.59
247 279 1.405872 CAACCATGCATGTAGGCCAT 58.594 50.000 24.58 0.65 0.00 4.40
322 362 1.434188 ATCCCTGTCCGCCATGATAA 58.566 50.000 0.00 0.00 0.00 1.75
450 490 4.129148 GAAAGGCGGGCAGGGGAT 62.129 66.667 3.78 0.00 0.00 3.85
484 547 3.411517 ATTGCACCGAGGAGGGGG 61.412 66.667 0.00 0.00 46.01 5.40
578 641 3.579626 AAAGAAACAGAGCGCGCGC 62.580 57.895 45.10 45.10 42.33 6.86
579 642 1.507919 GAAAGAAACAGAGCGCGCG 60.508 57.895 28.44 28.44 0.00 6.86
580 643 0.235926 AAGAAAGAAACAGAGCGCGC 59.764 50.000 26.66 26.66 0.00 6.86
581 644 2.670401 AAAGAAAGAAACAGAGCGCG 57.330 45.000 0.00 0.00 0.00 6.86
582 645 5.089411 GGAATAAAGAAAGAAACAGAGCGC 58.911 41.667 0.00 0.00 0.00 5.92
686 780 4.176752 GGTCGGGGCTGGATGGAC 62.177 72.222 0.00 0.00 0.00 4.02
828 942 4.693420 AGGAGAGGAGAAATGGAAAGAGA 58.307 43.478 0.00 0.00 0.00 3.10
829 943 4.441356 CGAGGAGAGGAGAAATGGAAAGAG 60.441 50.000 0.00 0.00 0.00 2.85
830 944 3.449018 CGAGGAGAGGAGAAATGGAAAGA 59.551 47.826 0.00 0.00 0.00 2.52
831 945 3.431486 CCGAGGAGAGGAGAAATGGAAAG 60.431 52.174 0.00 0.00 0.00 2.62
832 946 2.501723 CCGAGGAGAGGAGAAATGGAAA 59.498 50.000 0.00 0.00 0.00 3.13
833 947 2.111384 CCGAGGAGAGGAGAAATGGAA 58.889 52.381 0.00 0.00 0.00 3.53
834 948 1.689575 CCCGAGGAGAGGAGAAATGGA 60.690 57.143 0.00 0.00 0.00 3.41
835 949 0.755686 CCCGAGGAGAGGAGAAATGG 59.244 60.000 0.00 0.00 0.00 3.16
836 950 1.781786 TCCCGAGGAGAGGAGAAATG 58.218 55.000 0.00 0.00 0.00 2.32
837 951 2.552093 TTCCCGAGGAGAGGAGAAAT 57.448 50.000 0.00 0.00 32.57 2.17
838 952 2.320681 TTTCCCGAGGAGAGGAGAAA 57.679 50.000 0.00 0.00 32.57 2.52
839 953 2.320681 TTTTCCCGAGGAGAGGAGAA 57.679 50.000 0.00 0.00 32.57 2.87
840 954 2.180276 CTTTTTCCCGAGGAGAGGAGA 58.820 52.381 0.00 0.00 32.57 3.71
841 955 1.406205 GCTTTTTCCCGAGGAGAGGAG 60.406 57.143 0.00 0.00 32.57 3.69
842 956 0.613777 GCTTTTTCCCGAGGAGAGGA 59.386 55.000 0.00 0.00 31.21 3.71
843 957 0.741221 CGCTTTTTCCCGAGGAGAGG 60.741 60.000 0.00 0.00 31.21 3.69
1070 1204 2.217038 TGGAGGTGGAGTGTGGCTC 61.217 63.158 0.00 0.00 43.39 4.70
1091 1225 8.040132 ACTACTCGACTATAAATATAGGAGCGT 58.960 37.037 11.18 8.13 39.91 5.07
1126 1261 0.114560 TCTTCCCTTGACTCCTCGGT 59.885 55.000 0.00 0.00 0.00 4.69
1127 1262 1.205893 CTTCTTCCCTTGACTCCTCGG 59.794 57.143 0.00 0.00 0.00 4.63
1129 1264 3.618752 GCTTCTTCTTCCCTTGACTCCTC 60.619 52.174 0.00 0.00 0.00 3.71
1130 1265 2.304470 GCTTCTTCTTCCCTTGACTCCT 59.696 50.000 0.00 0.00 0.00 3.69
1131 1266 2.616765 GGCTTCTTCTTCCCTTGACTCC 60.617 54.545 0.00 0.00 0.00 3.85
1248 1383 3.125316 GCCTCAAAACCTTGTCGTAGATG 59.875 47.826 0.00 0.00 40.67 2.90
1253 1388 0.179067 TCGCCTCAAAACCTTGTCGT 60.179 50.000 0.00 0.00 33.94 4.34
1254 1389 0.941542 TTCGCCTCAAAACCTTGTCG 59.058 50.000 0.00 0.00 33.94 4.35
1255 1390 2.412847 CGATTCGCCTCAAAACCTTGTC 60.413 50.000 0.00 0.00 33.94 3.18
1270 1405 3.112580 GCTTCTCCTTCTCTTCGATTCG 58.887 50.000 0.00 0.00 0.00 3.34
1276 1411 1.404851 CGTGGGCTTCTCCTTCTCTTC 60.405 57.143 0.00 0.00 34.39 2.87
1362 1500 3.782244 GACGACAAGCAGCGCCAG 61.782 66.667 2.29 0.00 0.00 4.85
1365 1503 3.832171 CGAGACGACAAGCAGCGC 61.832 66.667 0.00 0.00 0.00 5.92
1366 1504 2.429236 ACGAGACGACAAGCAGCG 60.429 61.111 0.00 0.00 0.00 5.18
1373 1511 4.617486 AACGCGCACGAGACGACA 62.617 61.111 5.73 0.00 43.93 4.35
1472 1610 2.279517 GCCACGATGCTCCGGTAG 60.280 66.667 0.00 0.00 0.00 3.18
1477 1615 3.740128 ATCCGTGCCACGATGCTCC 62.740 63.158 20.57 0.00 46.05 4.70
1490 1628 3.981071 TTCTTCATCTTGTCCATCCGT 57.019 42.857 0.00 0.00 0.00 4.69
1511 1649 0.250513 GAATGGTCTTGACGGAGGCT 59.749 55.000 0.00 0.00 0.00 4.58
1559 1697 1.135859 GTCAAACATGAAGAGCAGGCG 60.136 52.381 0.00 0.00 0.00 5.52
1563 1701 1.547675 GGGGGTCAAACATGAAGAGCA 60.548 52.381 0.00 0.00 0.00 4.26
1566 1704 1.060729 TCGGGGGTCAAACATGAAGA 58.939 50.000 0.00 0.00 0.00 2.87
1567 1705 1.165270 GTCGGGGGTCAAACATGAAG 58.835 55.000 0.00 0.00 0.00 3.02
1570 1708 0.676782 GAGGTCGGGGGTCAAACATG 60.677 60.000 0.00 0.00 0.00 3.21
1617 1755 4.328440 CGTCAAACATTGCCACAAGAAAAA 59.672 37.500 0.00 0.00 0.00 1.94
1625 1763 3.236816 CAGATTCGTCAAACATTGCCAC 58.763 45.455 0.00 0.00 0.00 5.01
1627 1765 3.559238 ACAGATTCGTCAAACATTGCC 57.441 42.857 0.00 0.00 0.00 4.52
1628 1766 5.888412 AAAACAGATTCGTCAAACATTGC 57.112 34.783 0.00 0.00 0.00 3.56
1629 1767 6.122125 GCAAAAACAGATTCGTCAAACATTG 58.878 36.000 0.00 0.00 0.00 2.82
1644 1789 2.498892 GCTCTGCGTGCAAAAACAG 58.501 52.632 0.00 0.00 0.00 3.16
1761 1906 1.069204 GAATGCAGCTACGGAGGATGA 59.931 52.381 0.00 0.00 0.00 2.92
1763 1908 1.418334 AGAATGCAGCTACGGAGGAT 58.582 50.000 0.00 0.00 0.00 3.24
1767 1912 3.887621 AAGTAAGAATGCAGCTACGGA 57.112 42.857 0.00 0.00 0.00 4.69
1768 1913 4.631813 AGAAAAGTAAGAATGCAGCTACGG 59.368 41.667 0.00 0.00 0.00 4.02
1769 1914 5.120830 ACAGAAAAGTAAGAATGCAGCTACG 59.879 40.000 0.00 0.00 0.00 3.51
1770 1915 6.370166 AGACAGAAAAGTAAGAATGCAGCTAC 59.630 38.462 0.00 0.00 0.00 3.58
1772 1917 5.312079 AGACAGAAAAGTAAGAATGCAGCT 58.688 37.500 0.00 0.00 0.00 4.24
1785 1949 5.390991 GGCTGATCGGTAAAAGACAGAAAAG 60.391 44.000 2.89 0.00 35.77 2.27
1788 1952 3.596214 GGCTGATCGGTAAAAGACAGAA 58.404 45.455 2.89 0.00 35.77 3.02
1809 1973 3.308878 CTTTTCAGAACGCCGGCCG 62.309 63.158 23.46 21.04 44.21 6.13
1815 1979 2.427506 ACCATCTCCTTTTCAGAACGC 58.572 47.619 0.00 0.00 0.00 4.84
1825 1989 3.624777 CTGCAAATGGTACCATCTCCTT 58.375 45.455 27.49 15.17 35.31 3.36
1826 1990 2.092212 CCTGCAAATGGTACCATCTCCT 60.092 50.000 27.49 9.49 35.31 3.69
1827 1991 2.301346 CCTGCAAATGGTACCATCTCC 58.699 52.381 27.49 17.46 35.31 3.71
1833 1997 1.098050 CTCAGCCTGCAAATGGTACC 58.902 55.000 4.43 4.43 0.00 3.34
1836 2000 1.980772 GGCTCAGCCTGCAAATGGT 60.981 57.895 9.09 0.00 46.69 3.55
2084 2253 0.686441 TATCAGCTGGGCGTGGTAGT 60.686 55.000 15.13 0.00 0.00 2.73
2110 2282 1.434622 ATGAGATCGCCGTACGTCGT 61.435 55.000 18.75 6.06 44.19 4.34
2111 2283 0.721811 GATGAGATCGCCGTACGTCG 60.722 60.000 13.18 13.18 44.19 5.12
2112 2284 0.306840 TGATGAGATCGCCGTACGTC 59.693 55.000 15.21 0.00 44.19 4.34
2146 2318 0.405198 TGGTGGGTCAGTACTCGGTA 59.595 55.000 0.00 0.00 0.00 4.02
2147 2319 0.898789 CTGGTGGGTCAGTACTCGGT 60.899 60.000 0.00 0.00 0.00 4.69
2148 2320 0.611062 TCTGGTGGGTCAGTACTCGG 60.611 60.000 0.00 0.00 36.25 4.63
2149 2321 1.475403 ATCTGGTGGGTCAGTACTCG 58.525 55.000 0.00 0.00 36.25 4.18
2150 2322 3.181474 GCTAATCTGGTGGGTCAGTACTC 60.181 52.174 0.00 0.00 36.25 2.59
2151 2323 2.766828 GCTAATCTGGTGGGTCAGTACT 59.233 50.000 0.00 0.00 36.25 2.73
2152 2324 2.481449 CGCTAATCTGGTGGGTCAGTAC 60.481 54.545 0.00 0.00 36.25 2.73
2225 2398 3.188786 GCCGCAGTTACTGGCTCG 61.189 66.667 14.63 8.97 45.40 5.03
2279 2460 0.172578 TGCGCGCTACACTATTGAGT 59.827 50.000 33.29 0.00 35.80 3.41
2289 2470 2.685387 ATCCAGCTACTGCGCGCTAC 62.685 60.000 33.29 16.23 45.42 3.58
2338 2519 2.099921 AGACGCAGGTTGATGCTAGTAG 59.900 50.000 0.00 0.00 44.24 2.57
2339 2520 2.100197 AGACGCAGGTTGATGCTAGTA 58.900 47.619 0.00 0.00 44.24 1.82
2340 2521 0.898320 AGACGCAGGTTGATGCTAGT 59.102 50.000 0.00 0.00 44.24 2.57
2516 2697 3.399770 CACACACGCACGTACGGG 61.400 66.667 21.06 18.06 43.76 5.28
2526 2707 1.153978 GCCATTGCCATCACACACG 60.154 57.895 0.00 0.00 0.00 4.49
2528 2709 0.533032 CATGCCATTGCCATCACACA 59.467 50.000 0.00 0.00 36.33 3.72
2529 2710 0.179094 CCATGCCATTGCCATCACAC 60.179 55.000 0.00 0.00 36.33 3.82
2530 2711 0.324460 TCCATGCCATTGCCATCACA 60.324 50.000 0.00 0.00 36.33 3.58
2531 2712 0.103572 GTCCATGCCATTGCCATCAC 59.896 55.000 0.00 0.00 36.33 3.06
2532 2713 1.044231 GGTCCATGCCATTGCCATCA 61.044 55.000 0.00 0.00 36.33 3.07
2533 2714 0.757935 AGGTCCATGCCATTGCCATC 60.758 55.000 0.00 0.00 36.33 3.51
2534 2715 0.325860 AAGGTCCATGCCATTGCCAT 60.326 50.000 0.00 0.00 36.33 4.40
2535 2716 0.334335 TAAGGTCCATGCCATTGCCA 59.666 50.000 0.00 0.00 36.33 4.92
2536 2717 1.035139 CTAAGGTCCATGCCATTGCC 58.965 55.000 0.00 0.00 36.33 4.52
2537 2718 0.386838 GCTAAGGTCCATGCCATTGC 59.613 55.000 0.00 0.00 38.26 3.56
2538 2719 2.062971 AGCTAAGGTCCATGCCATTG 57.937 50.000 0.00 0.00 0.00 2.82
2539 2720 2.025037 TCAAGCTAAGGTCCATGCCATT 60.025 45.455 0.00 0.00 0.00 3.16
2568 2755 0.947960 CACCACACATACGCCAAACA 59.052 50.000 0.00 0.00 0.00 2.83
2759 2946 2.482414 TAAGGGGAAGGCGGATTAGA 57.518 50.000 0.00 0.00 0.00 2.10
2762 2949 1.700186 GAGATAAGGGGAAGGCGGATT 59.300 52.381 0.00 0.00 0.00 3.01
2763 2950 1.353091 GAGATAAGGGGAAGGCGGAT 58.647 55.000 0.00 0.00 0.00 4.18
2767 2954 1.954927 CAACGAGATAAGGGGAAGGC 58.045 55.000 0.00 0.00 0.00 4.35
2844 3113 5.143660 TGCTTTCAAATGTGATTTCGTACG 58.856 37.500 9.53 9.53 32.48 3.67
2870 3139 5.939764 TCACATTAACACTCCTCTATGCT 57.060 39.130 0.00 0.00 0.00 3.79
2871 3140 6.818644 TCTTTCACATTAACACTCCTCTATGC 59.181 38.462 0.00 0.00 0.00 3.14
2875 3144 7.989741 CCATATCTTTCACATTAACACTCCTCT 59.010 37.037 0.00 0.00 0.00 3.69
2878 3147 7.987458 TCTCCATATCTTTCACATTAACACTCC 59.013 37.037 0.00 0.00 0.00 3.85
2959 3228 1.069204 TGCCAGTCTCAACTCACTCAC 59.931 52.381 0.00 0.00 31.71 3.51
2972 3241 1.862806 GACGTGAAAGCTGCCAGTC 59.137 57.895 0.00 0.00 0.00 3.51
2974 3243 2.856032 CGACGTGAAAGCTGCCAG 59.144 61.111 0.00 0.00 0.00 4.85
3022 3300 1.587054 CGTTCTGCGACTTCCCTCT 59.413 57.895 0.00 0.00 44.77 3.69
3051 3344 2.183046 GAGAGACGGACAGCCTGC 59.817 66.667 0.00 0.00 0.00 4.85
3052 3345 2.888863 GGAGAGACGGACAGCCTG 59.111 66.667 0.00 0.00 0.00 4.85
3053 3346 2.752238 CGGAGAGACGGACAGCCT 60.752 66.667 0.00 0.00 0.00 4.58
3153 3446 4.065281 CAAGCAAGGGCCTGCAGC 62.065 66.667 23.65 19.95 45.18 5.25
3155 3448 1.228956 ATTCAAGCAAGGGCCTGCA 60.229 52.632 23.65 8.76 45.18 4.41
3176 3469 1.529309 GGAGGGAGGGATGAAGCAC 59.471 63.158 0.00 0.00 0.00 4.40
3177 3470 1.694169 GGGAGGGAGGGATGAAGCA 60.694 63.158 0.00 0.00 0.00 3.91
3195 3489 4.375272 CATGCAGTAATGTGACTAGGGAG 58.625 47.826 0.00 0.00 0.00 4.30
3213 3619 4.931601 TCATTACTTATCCTCGATGCATGC 59.068 41.667 11.82 11.82 0.00 4.06
3221 3631 7.664082 AATGCTTGATCATTACTTATCCTCG 57.336 36.000 0.00 0.00 35.12 4.63
3258 3668 7.923344 GCTTGACTACTCTGCTAATCTGAATAA 59.077 37.037 0.00 0.00 0.00 1.40
3284 3698 8.681486 TGATTGAATCTCAACTATAATGGTGG 57.319 34.615 6.73 0.00 39.45 4.61
3384 3801 5.363939 AGCATGCTAACAGGATTCTACTTC 58.636 41.667 21.21 0.00 0.00 3.01
3449 3872 1.264749 CGATCCCCAGTTCCACCTCA 61.265 60.000 0.00 0.00 0.00 3.86
3570 4006 0.314935 CATGCACCAGTTTGACCACC 59.685 55.000 0.00 0.00 0.00 4.61
3581 4017 0.744057 CGTATGGACTGCATGCACCA 60.744 55.000 26.83 26.83 36.83 4.17
3583 4019 0.374758 CACGTATGGACTGCATGCAC 59.625 55.000 18.46 8.17 0.00 4.57
3613 4068 3.297134 AAAGAAAGCCAGGAACAGTGA 57.703 42.857 0.00 0.00 0.00 3.41
3624 4079 1.819288 GGGCTCACCTAAAAGAAAGCC 59.181 52.381 2.60 2.60 46.77 4.35
3649 4104 2.550487 GGCTGTTGTCGCCATACAA 58.450 52.632 0.00 0.00 46.77 2.41
3715 4177 3.925379 TGCACTGGTATGAAGTACAGTG 58.075 45.455 16.75 16.75 40.93 3.66
3716 4178 4.617253 TTGCACTGGTATGAAGTACAGT 57.383 40.909 0.00 0.00 34.87 3.55
3717 4179 5.940192 TTTTGCACTGGTATGAAGTACAG 57.060 39.130 0.00 0.00 34.87 2.74
3741 4234 6.532657 TCGACACTTCGTTTAGTTTTCTTCTT 59.467 34.615 0.00 0.00 46.01 2.52
3774 4270 3.533691 GTACGCGTCGCTCTGCAC 61.534 66.667 18.63 0.74 0.00 4.57
4312 4813 3.286576 CCGATGACGATCAGTACGTAAC 58.713 50.000 0.00 0.00 43.97 2.50
4313 4814 2.286595 GCCGATGACGATCAGTACGTAA 60.287 50.000 0.00 0.00 43.97 3.18
4355 4862 2.855187 GCAGATCGACGGATGTGTACTC 60.855 54.545 0.00 0.00 43.80 2.59
4356 4863 1.065701 GCAGATCGACGGATGTGTACT 59.934 52.381 0.00 0.00 43.80 2.73
4357 4864 1.065701 AGCAGATCGACGGATGTGTAC 59.934 52.381 0.00 0.00 43.80 2.90
4358 4865 1.389555 AGCAGATCGACGGATGTGTA 58.610 50.000 0.00 0.00 43.80 2.90
4359 4866 0.532573 AAGCAGATCGACGGATGTGT 59.467 50.000 0.00 0.00 43.80 3.72
4360 4867 2.492019 TAAGCAGATCGACGGATGTG 57.508 50.000 0.00 0.00 44.51 3.21
4361 4868 2.427453 AGTTAAGCAGATCGACGGATGT 59.573 45.455 0.00 0.00 31.51 3.06
4362 4869 2.791560 CAGTTAAGCAGATCGACGGATG 59.208 50.000 0.00 0.00 31.51 3.51
4445 4965 2.094078 CCGTTCCCTTGGTACGTAATGA 60.094 50.000 10.65 0.00 43.23 2.57
4450 4970 1.667722 GTCCGTTCCCTTGGTACGT 59.332 57.895 10.65 0.00 43.23 3.57
4451 4971 1.444895 CGTCCGTTCCCTTGGTACG 60.445 63.158 5.44 5.44 44.11 3.67
4452 4972 1.079612 CCGTCCGTTCCCTTGGTAC 60.080 63.158 0.00 0.00 0.00 3.34
4453 4973 2.946346 GCCGTCCGTTCCCTTGGTA 61.946 63.158 0.00 0.00 0.00 3.25
4454 4974 4.324991 GCCGTCCGTTCCCTTGGT 62.325 66.667 0.00 0.00 0.00 3.67
4467 4987 2.503375 GATCGACGTCGTTGCCGT 60.503 61.111 34.40 16.10 42.06 5.68
4469 4989 0.030369 ATAGGATCGACGTCGTTGCC 59.970 55.000 34.40 29.95 40.80 4.52
4475 4995 5.051816 AGCTAGCTATATAGGATCGACGTC 58.948 45.833 17.69 5.18 0.00 4.34
4478 4998 6.425721 CCACTAGCTAGCTATATAGGATCGAC 59.574 46.154 24.36 0.00 0.00 4.20
4507 5031 0.168788 TACGTGTCAACCCGATCGAC 59.831 55.000 18.66 6.83 0.00 4.20
4528 5052 1.689352 ATAAGCACCGCGCAACGTAC 61.689 55.000 8.75 0.00 46.13 3.67
4531 5055 0.727793 AAAATAAGCACCGCGCAACG 60.728 50.000 8.75 0.00 46.13 4.10
4534 5058 0.808125 ATCAAAATAAGCACCGCGCA 59.192 45.000 8.75 0.00 46.13 6.09
4546 5070 3.057033 GCAAGACTCAGCCACATCAAAAT 60.057 43.478 0.00 0.00 0.00 1.82
4558 5082 6.587608 AGAAAAACAAAAACAGCAAGACTCAG 59.412 34.615 0.00 0.00 0.00 3.35
4563 5087 6.036577 AGGAGAAAAACAAAAACAGCAAGA 57.963 33.333 0.00 0.00 0.00 3.02
4652 5176 6.183360 ACACACGTACTACATAAGAGGATCAC 60.183 42.308 0.00 0.00 37.82 3.06
4654 5178 6.374565 ACACACGTACTACATAAGAGGATC 57.625 41.667 0.00 0.00 0.00 3.36
4668 5196 8.914654 TGAAACACTATATTACAACACACGTAC 58.085 33.333 0.00 0.00 0.00 3.67
4670 5198 7.949903 TGAAACACTATATTACAACACACGT 57.050 32.000 0.00 0.00 0.00 4.49
4728 5256 1.748950 TGAACAGCAAGCACTTGTCA 58.251 45.000 11.77 5.04 42.31 3.58
4734 5262 2.291465 TCAGTTCATGAACAGCAAGCAC 59.709 45.455 33.92 10.42 43.47 4.40
4767 5295 0.037326 TTCTTCTTCACGCGCATCCT 60.037 50.000 5.73 0.00 0.00 3.24
4776 5304 2.774439 TTGCGCCTTTTCTTCTTCAC 57.226 45.000 4.18 0.00 0.00 3.18
4781 5309 2.127251 CTGGTTTTGCGCCTTTTCTTC 58.873 47.619 4.18 0.00 0.00 2.87
4797 5325 1.133482 AGGTGCAAAGTTTAGCCTGGT 60.133 47.619 0.00 0.00 0.00 4.00
4802 5330 1.069227 CGTGGAGGTGCAAAGTTTAGC 60.069 52.381 0.00 0.00 0.00 3.09
4809 5337 0.813610 CAGTGTCGTGGAGGTGCAAA 60.814 55.000 0.00 0.00 0.00 3.68
4810 5338 1.227527 CAGTGTCGTGGAGGTGCAA 60.228 57.895 0.00 0.00 0.00 4.08
4811 5339 2.421314 CAGTGTCGTGGAGGTGCA 59.579 61.111 0.00 0.00 0.00 4.57
4812 5340 3.044305 GCAGTGTCGTGGAGGTGC 61.044 66.667 0.00 0.00 0.00 5.01
4813 5341 1.665916 CAGCAGTGTCGTGGAGGTG 60.666 63.158 0.00 0.00 0.00 4.00
4814 5342 2.737180 CAGCAGTGTCGTGGAGGT 59.263 61.111 0.00 0.00 0.00 3.85
4815 5343 1.877576 TAGCAGCAGTGTCGTGGAGG 61.878 60.000 0.00 0.00 0.00 4.30
4816 5344 0.174389 ATAGCAGCAGTGTCGTGGAG 59.826 55.000 0.00 0.00 0.00 3.86
4817 5345 0.108662 CATAGCAGCAGTGTCGTGGA 60.109 55.000 0.00 0.00 0.00 4.02
4818 5346 1.699656 GCATAGCAGCAGTGTCGTGG 61.700 60.000 0.00 0.00 0.00 4.94
4819 5347 0.738762 AGCATAGCAGCAGTGTCGTG 60.739 55.000 0.00 0.00 36.85 4.35
4820 5348 0.738762 CAGCATAGCAGCAGTGTCGT 60.739 55.000 0.00 0.00 36.85 4.34
4821 5349 2.004445 CAGCATAGCAGCAGTGTCG 58.996 57.895 0.00 0.00 36.85 4.35
4822 5350 1.712977 GGCAGCATAGCAGCAGTGTC 61.713 60.000 8.58 0.00 42.80 3.67
4823 5351 1.748122 GGCAGCATAGCAGCAGTGT 60.748 57.895 8.58 0.00 42.80 3.55
4824 5352 2.820619 CGGCAGCATAGCAGCAGTG 61.821 63.158 8.58 0.00 42.80 3.66
4825 5353 2.513204 CGGCAGCATAGCAGCAGT 60.513 61.111 8.58 0.00 42.80 4.40
4826 5354 3.277602 CCGGCAGCATAGCAGCAG 61.278 66.667 8.58 4.29 42.80 4.24
4827 5355 4.100084 ACCGGCAGCATAGCAGCA 62.100 61.111 0.00 0.00 42.80 4.41
4828 5356 3.275338 GACCGGCAGCATAGCAGC 61.275 66.667 0.00 0.00 40.31 5.25
4829 5357 2.590007 GGACCGGCAGCATAGCAG 60.590 66.667 0.00 0.00 35.83 4.24
4830 5358 2.874648 CTTGGACCGGCAGCATAGCA 62.875 60.000 0.00 0.00 35.83 3.49
4831 5359 2.124736 TTGGACCGGCAGCATAGC 60.125 61.111 0.00 0.00 0.00 2.97
4832 5360 0.392998 AACTTGGACCGGCAGCATAG 60.393 55.000 0.00 0.00 0.00 2.23
4833 5361 0.676466 CAACTTGGACCGGCAGCATA 60.676 55.000 0.00 0.00 0.00 3.14
4834 5362 1.973281 CAACTTGGACCGGCAGCAT 60.973 57.895 0.00 0.00 0.00 3.79
4835 5363 2.594303 CAACTTGGACCGGCAGCA 60.594 61.111 0.00 0.00 0.00 4.41
4836 5364 1.856265 CTTCAACTTGGACCGGCAGC 61.856 60.000 0.00 0.00 0.00 5.25
4837 5365 1.237285 CCTTCAACTTGGACCGGCAG 61.237 60.000 0.00 0.00 0.00 4.85
4838 5366 1.228124 CCTTCAACTTGGACCGGCA 60.228 57.895 0.00 0.00 0.00 5.69
4839 5367 0.822121 AACCTTCAACTTGGACCGGC 60.822 55.000 0.00 0.00 0.00 6.13
4840 5368 2.551032 GTTAACCTTCAACTTGGACCGG 59.449 50.000 0.00 0.00 0.00 5.28
4841 5369 2.222445 CGTTAACCTTCAACTTGGACCG 59.778 50.000 0.00 0.00 0.00 4.79
4842 5370 2.031420 GCGTTAACCTTCAACTTGGACC 60.031 50.000 0.00 0.00 0.00 4.46
4843 5371 2.614983 TGCGTTAACCTTCAACTTGGAC 59.385 45.455 0.00 0.00 0.00 4.02
4844 5372 2.920524 TGCGTTAACCTTCAACTTGGA 58.079 42.857 0.00 0.00 0.00 3.53
4845 5373 3.915437 ATGCGTTAACCTTCAACTTGG 57.085 42.857 0.00 0.00 0.00 3.61
4846 5374 6.027749 GGATAATGCGTTAACCTTCAACTTG 58.972 40.000 15.77 0.00 31.83 3.16
4847 5375 5.944007 AGGATAATGCGTTAACCTTCAACTT 59.056 36.000 19.04 0.00 39.32 2.66
4848 5376 5.497474 AGGATAATGCGTTAACCTTCAACT 58.503 37.500 19.04 0.00 39.32 3.16
4849 5377 5.585047 AGAGGATAATGCGTTAACCTTCAAC 59.415 40.000 23.86 13.70 41.57 3.18
4850 5378 5.741011 AGAGGATAATGCGTTAACCTTCAA 58.259 37.500 23.86 0.00 41.57 2.69
4851 5379 5.353394 AGAGGATAATGCGTTAACCTTCA 57.647 39.130 23.86 0.00 41.57 3.02
4852 5380 5.927115 CCTAGAGGATAATGCGTTAACCTTC 59.073 44.000 23.86 17.46 41.57 3.46
4853 5381 5.601313 TCCTAGAGGATAATGCGTTAACCTT 59.399 40.000 23.86 16.89 41.57 3.50
4854 5382 5.145564 TCCTAGAGGATAATGCGTTAACCT 58.854 41.667 23.41 23.41 43.47 3.50
4855 5383 5.464030 TCCTAGAGGATAATGCGTTAACC 57.536 43.478 15.37 15.37 39.78 2.85
4860 5388 9.948818 TGCAATTTGTCCTAGAGGATAATGCGT 62.949 40.741 19.97 4.25 45.86 5.24
4861 5389 7.676640 TGCAATTTGTCCTAGAGGATAATGCG 61.677 42.308 19.97 11.71 45.86 4.73
4868 5396 4.908601 TCTTGCAATTTGTCCTAGAGGA 57.091 40.909 0.00 0.00 43.08 3.71
4869 5397 4.761739 TGTTCTTGCAATTTGTCCTAGAGG 59.238 41.667 0.00 0.00 0.00 3.69
4870 5398 5.947228 TGTTCTTGCAATTTGTCCTAGAG 57.053 39.130 0.00 0.00 0.00 2.43
4871 5399 5.827797 AGTTGTTCTTGCAATTTGTCCTAGA 59.172 36.000 0.00 0.00 0.00 2.43
4872 5400 6.076981 AGTTGTTCTTGCAATTTGTCCTAG 57.923 37.500 0.00 0.00 0.00 3.02
4873 5401 6.770785 ACTAGTTGTTCTTGCAATTTGTCCTA 59.229 34.615 0.00 0.00 0.00 2.94
4874 5402 5.594317 ACTAGTTGTTCTTGCAATTTGTCCT 59.406 36.000 0.00 0.00 0.00 3.85
4875 5403 5.831997 ACTAGTTGTTCTTGCAATTTGTCC 58.168 37.500 0.00 0.00 0.00 4.02
4876 5404 8.743099 GTTAACTAGTTGTTCTTGCAATTTGTC 58.257 33.333 18.56 0.00 39.89 3.18
4877 5405 7.431084 CGTTAACTAGTTGTTCTTGCAATTTGT 59.569 33.333 18.56 0.00 39.89 2.83
4878 5406 7.642194 TCGTTAACTAGTTGTTCTTGCAATTTG 59.358 33.333 18.56 0.00 39.89 2.32
4879 5407 7.699566 TCGTTAACTAGTTGTTCTTGCAATTT 58.300 30.769 18.56 0.00 39.89 1.82
4880 5408 7.254227 TCGTTAACTAGTTGTTCTTGCAATT 57.746 32.000 18.56 0.00 39.89 2.32
4881 5409 6.565999 GCTCGTTAACTAGTTGTTCTTGCAAT 60.566 38.462 18.56 0.00 39.89 3.56
4882 5410 5.277154 GCTCGTTAACTAGTTGTTCTTGCAA 60.277 40.000 18.56 0.00 39.89 4.08
4918 5446 2.057137 TGCTAATCATTGTGAGCCCC 57.943 50.000 0.00 0.00 33.87 5.80
4919 5447 4.823989 AGTAATGCTAATCATTGTGAGCCC 59.176 41.667 0.82 0.00 44.62 5.19
4937 5465 1.283181 CGAGAGCGCGCCTAGTAAT 59.717 57.895 30.33 7.05 0.00 1.89
4939 5467 3.277602 CCGAGAGCGCGCCTAGTA 61.278 66.667 30.33 0.00 35.83 1.82
4965 5493 2.144833 ATCGCCCAACACGACACGTA 62.145 55.000 0.00 0.00 43.23 3.57
5007 5541 7.444299 AGCAGAAAACATGTGTGGAAAAATAT 58.556 30.769 0.00 0.00 0.00 1.28
5021 5555 7.603963 AAACCGTTTAAAAAGCAGAAAACAT 57.396 28.000 0.00 0.00 32.61 2.71
5022 5556 7.422878 AAAACCGTTTAAAAAGCAGAAAACA 57.577 28.000 0.00 0.00 32.61 2.83
5151 5703 0.234884 GGAAGCAAAACCGTGACTCG 59.765 55.000 0.00 0.00 39.52 4.18
5209 5783 6.090898 CGTATTTTTCTGTTTCCGAGAGTCAT 59.909 38.462 0.00 0.00 0.00 3.06
5278 5997 1.153997 GAACCGTGCCTCTCTCGAC 60.154 63.158 0.00 0.00 33.89 4.20
5366 6514 1.656818 AAACCATGCCTCGCGGAATG 61.657 55.000 6.13 5.32 44.87 2.67
5367 6515 0.965363 AAAACCATGCCTCGCGGAAT 60.965 50.000 6.13 0.00 0.00 3.01
5400 6549 2.014128 CTTGTGAAAGGACAACCGTGT 58.986 47.619 0.00 0.00 42.10 4.49
5410 6559 1.593196 TTCGTGCCTCTTGTGAAAGG 58.407 50.000 0.00 0.00 35.65 3.11
5429 6578 2.839486 TCTGTTTTCGAGAGGCACAT 57.161 45.000 0.00 0.00 0.00 3.21
5472 6621 1.299541 CCGTGCCTATTGCGAAAGAT 58.700 50.000 0.00 0.00 45.60 2.40
5481 6630 2.228822 CAGAAGCAAAACCGTGCCTATT 59.771 45.455 0.00 0.00 46.14 1.73
5483 7069 1.234821 CAGAAGCAAAACCGTGCCTA 58.765 50.000 0.00 0.00 46.14 3.93
5486 7072 2.010817 CGCAGAAGCAAAACCGTGC 61.011 57.895 0.00 0.00 45.28 5.34
5536 7122 0.872388 GTTTTCGATGAGGCACGGTT 59.128 50.000 0.00 0.00 0.00 4.44
5558 7144 1.202722 TCGTTTCCGAGGAGGCTTTTT 60.203 47.619 0.00 0.00 38.40 1.94
5559 7145 0.395312 TCGTTTCCGAGGAGGCTTTT 59.605 50.000 0.00 0.00 38.40 2.27
5560 7146 0.395312 TTCGTTTCCGAGGAGGCTTT 59.605 50.000 0.00 0.00 45.24 3.51
5561 7147 0.395312 TTTCGTTTCCGAGGAGGCTT 59.605 50.000 0.00 0.00 45.24 4.35
5562 7148 0.395312 TTTTCGTTTCCGAGGAGGCT 59.605 50.000 0.00 0.00 45.24 4.58
5648 8322 1.276421 CCTCTCACGGAATCACAACCT 59.724 52.381 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.