Multiple sequence alignment - TraesCS3B01G107700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G107700 chr3B 100.000 3210 0 0 1 3210 73031131 73034340 0.000000e+00 5928.0
1 TraesCS3B01G107700 chr3B 98.175 3069 45 6 146 3210 452563157 452560096 0.000000e+00 5347.0
2 TraesCS3B01G107700 chr2B 97.685 3067 63 4 149 3210 553880195 553883258 0.000000e+00 5264.0
3 TraesCS3B01G107700 chr4B 97.389 3064 72 5 150 3210 629907328 629910386 0.000000e+00 5208.0
4 TraesCS3B01G107700 chr4B 96.021 3091 85 10 134 3210 665900165 665903231 0.000000e+00 4992.0
5 TraesCS3B01G107700 chr1A 97.069 3071 78 6 151 3210 444169075 444166006 0.000000e+00 5162.0
6 TraesCS3B01G107700 chr1A 90.196 51 2 2 100 147 517826218 517826168 2.670000e-06 63.9
7 TraesCS3B01G107700 chr1A 90.196 51 2 2 100 147 517858603 517858553 2.670000e-06 63.9
8 TraesCS3B01G107700 chr4A 96.581 3071 93 5 151 3210 36004230 36001161 0.000000e+00 5079.0
9 TraesCS3B01G107700 chr5A 95.825 2084 59 2 1129 3210 262471612 262469555 0.000000e+00 3341.0
10 TraesCS3B01G107700 chr5A 95.670 1986 55 5 134 2111 705867893 705869855 0.000000e+00 3162.0
11 TraesCS3B01G107700 chr5A 97.016 1106 31 1 2107 3210 705883335 705884440 0.000000e+00 1858.0
12 TraesCS3B01G107700 chr5A 91.310 725 30 4 149 840 310728837 310728113 0.000000e+00 959.0
13 TraesCS3B01G107700 chr2A 95.614 2075 63 2 1129 3201 694743563 694741515 0.000000e+00 3302.0
14 TraesCS3B01G107700 chr2A 98.233 283 5 0 849 1131 694743887 694743605 2.220000e-136 496.0
15 TraesCS3B01G107700 chr5D 97.169 989 25 2 2224 3210 309068222 309067235 0.000000e+00 1668.0
16 TraesCS3B01G107700 chr1D 97.068 989 27 1 2224 3210 97785404 97784416 0.000000e+00 1664.0
17 TraesCS3B01G107700 chr7A 93.562 699 35 3 151 840 699627689 699626992 0.000000e+00 1033.0
18 TraesCS3B01G107700 chr7A 98.246 285 5 0 847 1131 709138064 709137780 1.720000e-137 499.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G107700 chr3B 73031131 73034340 3209 False 5928 5928 100.0000 1 3210 1 chr3B.!!$F1 3209
1 TraesCS3B01G107700 chr3B 452560096 452563157 3061 True 5347 5347 98.1750 146 3210 1 chr3B.!!$R1 3064
2 TraesCS3B01G107700 chr2B 553880195 553883258 3063 False 5264 5264 97.6850 149 3210 1 chr2B.!!$F1 3061
3 TraesCS3B01G107700 chr4B 629907328 629910386 3058 False 5208 5208 97.3890 150 3210 1 chr4B.!!$F1 3060
4 TraesCS3B01G107700 chr4B 665900165 665903231 3066 False 4992 4992 96.0210 134 3210 1 chr4B.!!$F2 3076
5 TraesCS3B01G107700 chr1A 444166006 444169075 3069 True 5162 5162 97.0690 151 3210 1 chr1A.!!$R1 3059
6 TraesCS3B01G107700 chr4A 36001161 36004230 3069 True 5079 5079 96.5810 151 3210 1 chr4A.!!$R1 3059
7 TraesCS3B01G107700 chr5A 262469555 262471612 2057 True 3341 3341 95.8250 1129 3210 1 chr5A.!!$R1 2081
8 TraesCS3B01G107700 chr5A 705867893 705869855 1962 False 3162 3162 95.6700 134 2111 1 chr5A.!!$F1 1977
9 TraesCS3B01G107700 chr5A 705883335 705884440 1105 False 1858 1858 97.0160 2107 3210 1 chr5A.!!$F2 1103
10 TraesCS3B01G107700 chr5A 310728113 310728837 724 True 959 959 91.3100 149 840 1 chr5A.!!$R2 691
11 TraesCS3B01G107700 chr2A 694741515 694743887 2372 True 1899 3302 96.9235 849 3201 2 chr2A.!!$R1 2352
12 TraesCS3B01G107700 chr5D 309067235 309068222 987 True 1668 1668 97.1690 2224 3210 1 chr5D.!!$R1 986
13 TraesCS3B01G107700 chr1D 97784416 97785404 988 True 1664 1664 97.0680 2224 3210 1 chr1D.!!$R1 986
14 TraesCS3B01G107700 chr7A 699626992 699627689 697 True 1033 1033 93.5620 151 840 1 chr7A.!!$R1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.039346 CAACATGGATTGTGCGTGCA 60.039 50.0 0.00 0.00 38.99 4.57 F
70 71 0.171679 ACATGGATTGTGCGTGCATG 59.828 50.0 0.09 0.09 46.75 4.06 F
71 72 0.171679 CATGGATTGTGCGTGCATGT 59.828 50.0 7.93 0.00 39.61 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 1762 0.930726 AAGAACACCCAACCCCAAGA 59.069 50.000 0.0 0.0 0.0 3.02 R
2043 2131 4.321675 GGGAAAACGACCAATAAAGCATGT 60.322 41.667 0.0 0.0 0.0 3.21 R
2877 2992 0.036952 CCAGTCTGTCGTGCATCCTT 60.037 55.000 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.818714 CAGCAGCCGAGCCAGAAG 60.819 66.667 0.00 0.00 34.23 2.85
19 20 3.317571 AGCAGCCGAGCCAGAAGT 61.318 61.111 0.00 0.00 34.23 3.01
20 21 3.123620 GCAGCCGAGCCAGAAGTG 61.124 66.667 0.00 0.00 0.00 3.16
21 22 3.123620 CAGCCGAGCCAGAAGTGC 61.124 66.667 0.00 0.00 0.00 4.40
22 23 4.749310 AGCCGAGCCAGAAGTGCG 62.749 66.667 0.00 0.00 0.00 5.34
25 26 2.816958 CGAGCCAGAAGTGCGCAT 60.817 61.111 15.91 0.00 0.00 4.73
26 27 2.789917 GAGCCAGAAGTGCGCATG 59.210 61.111 15.91 7.72 0.00 4.06
27 28 3.392595 GAGCCAGAAGTGCGCATGC 62.393 63.158 15.91 7.91 43.20 4.06
28 29 4.487412 GCCAGAAGTGCGCATGCC 62.487 66.667 15.91 5.48 41.78 4.40
29 30 2.749044 CCAGAAGTGCGCATGCCT 60.749 61.111 15.91 8.06 41.78 4.75
30 31 2.483745 CAGAAGTGCGCATGCCTG 59.516 61.111 15.91 16.74 41.78 4.85
31 32 3.437795 AGAAGTGCGCATGCCTGC 61.438 61.111 15.91 11.53 45.31 4.85
32 33 3.437795 GAAGTGCGCATGCCTGCT 61.438 61.111 15.91 0.54 46.65 4.24
33 34 3.678717 GAAGTGCGCATGCCTGCTG 62.679 63.158 15.91 6.89 46.65 4.41
46 47 4.377708 TGCTGCGTGCGTGAGGAT 62.378 61.111 0.00 0.00 46.63 3.24
47 48 3.857854 GCTGCGTGCGTGAGGATG 61.858 66.667 0.00 0.00 41.87 3.51
51 52 2.741985 CGTGCGTGAGGATGCCAA 60.742 61.111 0.00 0.00 32.56 4.52
52 53 2.870372 GTGCGTGAGGATGCCAAC 59.130 61.111 0.00 0.00 32.56 3.77
53 54 1.965930 GTGCGTGAGGATGCCAACA 60.966 57.895 0.00 0.00 32.56 3.33
54 55 1.002257 TGCGTGAGGATGCCAACAT 60.002 52.632 0.00 0.00 39.98 2.71
55 56 1.307355 TGCGTGAGGATGCCAACATG 61.307 55.000 0.00 0.00 36.35 3.21
56 57 1.996786 GCGTGAGGATGCCAACATGG 61.997 60.000 0.00 0.00 41.55 3.66
57 58 0.392863 CGTGAGGATGCCAACATGGA 60.393 55.000 0.00 0.00 40.96 3.41
58 59 1.748244 CGTGAGGATGCCAACATGGAT 60.748 52.381 0.00 0.00 40.96 3.41
59 60 2.381911 GTGAGGATGCCAACATGGATT 58.618 47.619 0.00 0.00 40.96 3.01
60 61 2.100252 GTGAGGATGCCAACATGGATTG 59.900 50.000 0.00 0.00 40.96 2.67
61 62 2.291735 TGAGGATGCCAACATGGATTGT 60.292 45.455 0.00 0.00 40.96 2.71
62 63 2.100252 GAGGATGCCAACATGGATTGTG 59.900 50.000 0.00 0.00 40.96 3.33
63 64 1.472026 GGATGCCAACATGGATTGTGC 60.472 52.381 0.00 0.70 40.96 4.57
64 65 0.173935 ATGCCAACATGGATTGTGCG 59.826 50.000 0.00 0.00 40.96 5.34
65 66 1.177895 TGCCAACATGGATTGTGCGT 61.178 50.000 0.00 0.00 40.96 5.24
66 67 0.733566 GCCAACATGGATTGTGCGTG 60.734 55.000 0.00 0.00 40.96 5.34
67 68 0.733566 CCAACATGGATTGTGCGTGC 60.734 55.000 0.00 0.00 40.96 5.34
68 69 0.039346 CAACATGGATTGTGCGTGCA 60.039 50.000 0.00 0.00 38.99 4.57
69 70 0.889994 AACATGGATTGTGCGTGCAT 59.110 45.000 0.00 0.00 38.99 3.96
70 71 0.171679 ACATGGATTGTGCGTGCATG 59.828 50.000 0.09 0.09 46.75 4.06
71 72 0.171679 CATGGATTGTGCGTGCATGT 59.828 50.000 7.93 0.00 39.61 3.21
72 73 0.171679 ATGGATTGTGCGTGCATGTG 59.828 50.000 7.93 0.00 0.00 3.21
73 74 1.153978 GGATTGTGCGTGCATGTGG 60.154 57.895 7.93 0.00 0.00 4.17
74 75 1.585267 GGATTGTGCGTGCATGTGGA 61.585 55.000 7.93 0.00 0.00 4.02
75 76 0.179181 GATTGTGCGTGCATGTGGAG 60.179 55.000 7.93 0.00 0.00 3.86
76 77 1.588824 ATTGTGCGTGCATGTGGAGG 61.589 55.000 7.93 0.00 0.00 4.30
77 78 4.107051 GTGCGTGCATGTGGAGGC 62.107 66.667 7.93 11.47 45.39 4.70
79 80 3.136123 GCGTGCATGTGGAGGCAT 61.136 61.111 13.12 0.00 41.77 4.40
80 81 2.795973 CGTGCATGTGGAGGCATG 59.204 61.111 0.00 2.06 41.77 4.06
81 82 1.746239 CGTGCATGTGGAGGCATGA 60.746 57.895 9.87 0.00 46.66 3.07
82 83 1.099295 CGTGCATGTGGAGGCATGAT 61.099 55.000 9.87 0.00 46.66 2.45
83 84 0.384309 GTGCATGTGGAGGCATGATG 59.616 55.000 9.87 0.00 46.65 3.07
84 85 0.753848 TGCATGTGGAGGCATGATGG 60.754 55.000 9.87 0.00 46.65 3.51
85 86 0.466739 GCATGTGGAGGCATGATGGA 60.467 55.000 9.87 0.00 46.65 3.41
86 87 1.315690 CATGTGGAGGCATGATGGAC 58.684 55.000 0.00 0.00 46.65 4.02
87 88 0.179037 ATGTGGAGGCATGATGGACG 60.179 55.000 0.00 0.00 0.00 4.79
88 89 1.264045 TGTGGAGGCATGATGGACGA 61.264 55.000 0.00 0.00 0.00 4.20
89 90 0.531532 GTGGAGGCATGATGGACGAG 60.532 60.000 0.00 0.00 0.00 4.18
90 91 0.977627 TGGAGGCATGATGGACGAGT 60.978 55.000 0.00 0.00 0.00 4.18
91 92 1.040646 GGAGGCATGATGGACGAGTA 58.959 55.000 0.00 0.00 0.00 2.59
92 93 1.269831 GGAGGCATGATGGACGAGTAC 60.270 57.143 0.00 0.00 0.00 2.73
93 94 1.683917 GAGGCATGATGGACGAGTACT 59.316 52.381 0.00 0.00 0.00 2.73
94 95 2.885266 GAGGCATGATGGACGAGTACTA 59.115 50.000 0.00 0.00 0.00 1.82
95 96 2.623889 AGGCATGATGGACGAGTACTAC 59.376 50.000 0.00 0.00 0.00 2.73
96 97 2.623889 GGCATGATGGACGAGTACTACT 59.376 50.000 0.00 0.00 0.00 2.57
97 98 3.819337 GGCATGATGGACGAGTACTACTA 59.181 47.826 0.00 0.00 0.00 1.82
98 99 4.083217 GGCATGATGGACGAGTACTACTAG 60.083 50.000 0.00 0.00 0.00 2.57
99 100 4.515944 GCATGATGGACGAGTACTACTAGT 59.484 45.833 0.00 0.00 36.76 2.57
100 101 5.699915 GCATGATGGACGAGTACTACTAGTA 59.300 44.000 1.89 1.89 34.19 1.82
130 131 3.986996 AAATTCTCATTTTGGCTGGGG 57.013 42.857 0.00 0.00 0.00 4.96
131 132 1.870064 ATTCTCATTTTGGCTGGGGG 58.130 50.000 0.00 0.00 0.00 5.40
158 159 2.403561 GCCCCCTCAGAATCTCTACTT 58.596 52.381 0.00 0.00 0.00 2.24
200 201 4.618067 GGTCGCGTTTCGGATTTTATTTTT 59.382 37.500 5.77 0.00 39.05 1.94
204 205 5.341196 CGCGTTTCGGATTTTATTTTTGTCT 59.659 36.000 0.00 0.00 33.78 3.41
215 216 7.899648 TTTTATTTTTGTCTCACCTTACCCA 57.100 32.000 0.00 0.00 0.00 4.51
254 255 0.178903 TGGTACTTGCTCCCACCTCT 60.179 55.000 0.00 0.00 32.04 3.69
756 793 0.719015 ATCCACCTCTTCCTCCTCCA 59.281 55.000 0.00 0.00 0.00 3.86
814 851 2.347490 CAGCACGCCTACCTGGTT 59.653 61.111 3.84 0.00 38.35 3.67
1390 1477 7.096477 GCTGAACTTGTTTAGTTTATTGCTGTG 60.096 37.037 7.05 0.00 47.00 3.66
1675 1762 0.740737 GTGTTCTTGTGCTGCAGGTT 59.259 50.000 17.12 0.00 0.00 3.50
1868 1955 4.755266 TGTAGGAGATAGCAAAAGGACC 57.245 45.455 0.00 0.00 0.00 4.46
2877 2992 0.325203 TCTCACCGATCACCATCCCA 60.325 55.000 0.00 0.00 0.00 4.37
3070 3187 7.699878 AGGAGAAACCAATTTACTGAAGGTAT 58.300 34.615 0.00 0.00 42.04 2.73
3138 3255 4.527564 GATTTGCGTCGGAAATATTCTGG 58.472 43.478 22.42 0.00 36.68 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.123620 CACTTCTGGCTCGGCTGC 61.124 66.667 0.00 0.00 0.00 5.25
5 6 4.749310 CGCACTTCTGGCTCGGCT 62.749 66.667 0.00 0.00 0.00 5.52
9 10 2.789917 CATGCGCACTTCTGGCTC 59.210 61.111 14.90 0.00 0.00 4.70
10 11 3.437795 GCATGCGCACTTCTGGCT 61.438 61.111 14.90 0.00 38.36 4.75
13 14 2.483745 CAGGCATGCGCACTTCTG 59.516 61.111 14.90 16.48 41.24 3.02
14 15 3.437795 GCAGGCATGCGCACTTCT 61.438 61.111 14.90 7.39 43.87 2.85
29 30 4.377708 ATCCTCACGCACGCAGCA 62.378 61.111 0.00 0.00 46.13 4.41
30 31 3.857854 CATCCTCACGCACGCAGC 61.858 66.667 0.00 0.00 40.87 5.25
31 32 3.857854 GCATCCTCACGCACGCAG 61.858 66.667 0.00 0.00 0.00 5.18
34 35 2.741985 TTGGCATCCTCACGCACG 60.742 61.111 0.00 0.00 0.00 5.34
35 36 1.308069 ATGTTGGCATCCTCACGCAC 61.308 55.000 0.00 0.00 0.00 5.34
36 37 1.002257 ATGTTGGCATCCTCACGCA 60.002 52.632 0.00 0.00 0.00 5.24
37 38 1.430632 CATGTTGGCATCCTCACGC 59.569 57.895 0.00 0.00 31.99 5.34
38 39 0.392863 TCCATGTTGGCATCCTCACG 60.393 55.000 0.00 0.00 37.47 4.35
39 40 2.062971 ATCCATGTTGGCATCCTCAC 57.937 50.000 0.00 0.00 37.47 3.51
40 41 2.291735 ACAATCCATGTTGGCATCCTCA 60.292 45.455 0.00 0.00 40.06 3.86
41 42 2.100252 CACAATCCATGTTGGCATCCTC 59.900 50.000 0.00 0.00 41.46 3.71
42 43 2.104967 CACAATCCATGTTGGCATCCT 58.895 47.619 0.00 0.00 41.46 3.24
43 44 1.472026 GCACAATCCATGTTGGCATCC 60.472 52.381 0.00 0.00 41.46 3.51
44 45 1.799917 CGCACAATCCATGTTGGCATC 60.800 52.381 0.00 0.00 41.46 3.91
45 46 0.173935 CGCACAATCCATGTTGGCAT 59.826 50.000 0.00 0.00 41.46 4.40
46 47 1.177895 ACGCACAATCCATGTTGGCA 61.178 50.000 1.62 0.00 41.46 4.92
47 48 0.733566 CACGCACAATCCATGTTGGC 60.734 55.000 1.62 1.70 41.46 4.52
48 49 0.733566 GCACGCACAATCCATGTTGG 60.734 55.000 1.62 0.00 41.46 3.77
49 50 0.039346 TGCACGCACAATCCATGTTG 60.039 50.000 0.00 0.00 41.46 3.33
50 51 0.889994 ATGCACGCACAATCCATGTT 59.110 45.000 0.00 0.00 41.46 2.71
51 52 0.171679 CATGCACGCACAATCCATGT 59.828 50.000 0.00 0.00 45.34 3.21
52 53 0.171679 ACATGCACGCACAATCCATG 59.828 50.000 0.00 0.00 39.23 3.66
53 54 0.171679 CACATGCACGCACAATCCAT 59.828 50.000 0.00 0.00 0.00 3.41
54 55 1.580437 CACATGCACGCACAATCCA 59.420 52.632 0.00 0.00 0.00 3.41
55 56 1.153978 CCACATGCACGCACAATCC 60.154 57.895 0.00 0.00 0.00 3.01
56 57 0.179181 CTCCACATGCACGCACAATC 60.179 55.000 0.00 0.00 0.00 2.67
57 58 1.588824 CCTCCACATGCACGCACAAT 61.589 55.000 0.00 0.00 0.00 2.71
58 59 2.260154 CCTCCACATGCACGCACAA 61.260 57.895 0.00 0.00 0.00 3.33
59 60 2.669229 CCTCCACATGCACGCACA 60.669 61.111 0.00 0.00 0.00 4.57
60 61 4.107051 GCCTCCACATGCACGCAC 62.107 66.667 0.00 0.00 0.00 5.34
61 62 3.923782 ATGCCTCCACATGCACGCA 62.924 57.895 0.00 0.00 40.88 5.24
62 63 3.136123 ATGCCTCCACATGCACGC 61.136 61.111 0.00 0.00 40.88 5.34
63 64 1.099295 ATCATGCCTCCACATGCACG 61.099 55.000 0.00 0.00 45.75 5.34
64 65 0.384309 CATCATGCCTCCACATGCAC 59.616 55.000 0.00 0.00 45.75 4.57
65 66 0.753848 CCATCATGCCTCCACATGCA 60.754 55.000 0.00 0.00 45.75 3.96
66 67 0.466739 TCCATCATGCCTCCACATGC 60.467 55.000 0.00 0.00 45.75 4.06
68 69 0.179037 CGTCCATCATGCCTCCACAT 60.179 55.000 0.00 0.00 0.00 3.21
69 70 1.221566 CGTCCATCATGCCTCCACA 59.778 57.895 0.00 0.00 0.00 4.17
70 71 0.531532 CTCGTCCATCATGCCTCCAC 60.532 60.000 0.00 0.00 0.00 4.02
71 72 0.977627 ACTCGTCCATCATGCCTCCA 60.978 55.000 0.00 0.00 0.00 3.86
72 73 1.040646 TACTCGTCCATCATGCCTCC 58.959 55.000 0.00 0.00 0.00 4.30
73 74 1.683917 AGTACTCGTCCATCATGCCTC 59.316 52.381 0.00 0.00 0.00 4.70
74 75 1.781786 AGTACTCGTCCATCATGCCT 58.218 50.000 0.00 0.00 0.00 4.75
75 76 2.623889 AGTAGTACTCGTCCATCATGCC 59.376 50.000 0.00 0.00 0.00 4.40
76 77 3.992260 AGTAGTACTCGTCCATCATGC 57.008 47.619 0.00 0.00 0.00 4.06
77 78 7.119605 GTACTAGTAGTACTCGTCCATCATG 57.880 44.000 26.55 0.00 45.70 3.07
108 109 4.507157 CCCCCAGCCAAAATGAGAATTTTT 60.507 41.667 0.00 0.00 31.96 1.94
109 110 3.009363 CCCCCAGCCAAAATGAGAATTTT 59.991 43.478 0.00 0.00 34.37 1.82
110 111 2.573009 CCCCCAGCCAAAATGAGAATTT 59.427 45.455 0.00 0.00 0.00 1.82
111 112 2.190538 CCCCCAGCCAAAATGAGAATT 58.809 47.619 0.00 0.00 0.00 2.17
112 113 1.870064 CCCCCAGCCAAAATGAGAAT 58.130 50.000 0.00 0.00 0.00 2.40
113 114 3.379617 CCCCCAGCCAAAATGAGAA 57.620 52.632 0.00 0.00 0.00 2.87
133 134 3.406595 GATTCTGAGGGGGCCGTGG 62.407 68.421 0.00 0.00 0.00 4.94
134 135 2.190578 GATTCTGAGGGGGCCGTG 59.809 66.667 0.00 0.00 0.00 4.94
135 136 2.041265 AGATTCTGAGGGGGCCGT 59.959 61.111 0.00 0.00 0.00 5.68
136 137 0.470080 TAGAGATTCTGAGGGGGCCG 60.470 60.000 0.00 0.00 0.00 6.13
137 138 1.052617 GTAGAGATTCTGAGGGGGCC 58.947 60.000 0.00 0.00 0.00 5.80
138 139 2.095604 AGTAGAGATTCTGAGGGGGC 57.904 55.000 0.00 0.00 0.00 5.80
139 140 3.922375 AGAAGTAGAGATTCTGAGGGGG 58.078 50.000 0.00 0.00 35.70 5.40
140 141 6.553100 ACATTAGAAGTAGAGATTCTGAGGGG 59.447 42.308 0.00 0.00 37.56 4.79
141 142 7.505585 AGACATTAGAAGTAGAGATTCTGAGGG 59.494 40.741 0.00 0.00 37.56 4.30
142 143 8.463930 AGACATTAGAAGTAGAGATTCTGAGG 57.536 38.462 0.00 0.00 37.56 3.86
143 144 9.119418 TGAGACATTAGAAGTAGAGATTCTGAG 57.881 37.037 0.00 0.00 37.56 3.35
144 145 9.119418 CTGAGACATTAGAAGTAGAGATTCTGA 57.881 37.037 0.00 0.00 37.56 3.27
158 159 4.398358 CGACCTACCAACTGAGACATTAGA 59.602 45.833 0.00 0.00 0.00 2.10
200 201 2.696526 AGACTGGGTAAGGTGAGACA 57.303 50.000 0.00 0.00 0.00 3.41
1581 1668 4.614036 CCGGGTGCCCCTTTGGTT 62.614 66.667 8.43 0.00 42.67 3.67
1675 1762 0.930726 AAGAACACCCAACCCCAAGA 59.069 50.000 0.00 0.00 0.00 3.02
2043 2131 4.321675 GGGAAAACGACCAATAAAGCATGT 60.322 41.667 0.00 0.00 0.00 3.21
2877 2992 0.036952 CCAGTCTGTCGTGCATCCTT 60.037 55.000 0.00 0.00 0.00 3.36
3095 3212 6.793505 ATCGTACAAGTAGGAGGAAGAAAT 57.206 37.500 8.37 0.00 34.06 2.17
3138 3255 5.358160 AGGGTCTAAAATTCATGCAAGTAGC 59.642 40.000 0.00 0.00 45.96 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.