Multiple sequence alignment - TraesCS3B01G107600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G107600 chr3B 100.000 5467 0 0 1 5467 72949295 72954761 0.000000e+00 10096.0
1 TraesCS3B01G107600 chr3B 80.952 525 74 18 2705 3226 814631040 814631541 5.130000e-105 392.0
2 TraesCS3B01G107600 chr3D 94.297 5138 182 40 1 5078 46579428 46584514 0.000000e+00 7762.0
3 TraesCS3B01G107600 chr3D 81.818 561 76 16 2669 3226 605469322 605468785 1.080000e-121 448.0
4 TraesCS3B01G107600 chr3D 79.851 134 20 5 4012 4140 609739076 609738945 2.100000e-14 91.6
5 TraesCS3B01G107600 chr3A 94.237 4616 161 38 485 5078 57948246 57943714 0.000000e+00 6953.0
6 TraesCS3B01G107600 chr3A 97.778 45 1 0 5073 5117 57943600 57943556 1.630000e-10 78.7
7 TraesCS3B01G107600 chr3A 100.000 28 0 0 42 69 57948271 57948244 1.000000e-02 52.8
8 TraesCS3B01G107600 chr1A 82.476 3304 507 57 1047 4326 117244619 117247874 0.000000e+00 2828.0
9 TraesCS3B01G107600 chr1A 86.833 281 25 5 2765 3038 535204684 535204959 2.470000e-78 303.0
10 TraesCS3B01G107600 chr1A 93.333 75 5 0 2669 2743 535204621 535204695 1.610000e-20 111.0
11 TraesCS3B01G107600 chr1D 82.558 2838 454 32 1045 3869 111089329 111092138 0.000000e+00 2460.0
12 TraesCS3B01G107600 chr1D 89.049 347 38 0 3980 4326 111092243 111092589 1.090000e-116 431.0
13 TraesCS3B01G107600 chr1D 82.839 472 51 13 2765 3226 438833794 438834245 3.970000e-106 396.0
14 TraesCS3B01G107600 chr1D 93.333 75 5 0 2669 2743 438833731 438833805 1.610000e-20 111.0
15 TraesCS3B01G107600 chr1D 86.364 88 11 1 1143 1230 87893643 87893729 1.620000e-15 95.3
16 TraesCS3B01G107600 chr1B 82.268 2831 461 31 1045 3862 169693862 169696664 0.000000e+00 2409.0
17 TraesCS3B01G107600 chr1B 87.896 347 42 0 3980 4326 169696777 169697123 5.100000e-110 409.0
18 TraesCS3B01G107600 chr1B 93.333 75 5 0 2669 2743 594691627 594691701 1.610000e-20 111.0
19 TraesCS3B01G107600 chr6B 80.478 1296 226 19 2320 3609 11954594 11955868 0.000000e+00 966.0
20 TraesCS3B01G107600 chr2A 89.513 267 28 0 1508 1774 20670386 20670652 6.780000e-89 339.0
21 TraesCS3B01G107600 chr2A 83.841 328 33 15 2801 3123 20671106 20671418 1.490000e-75 294.0
22 TraesCS3B01G107600 chr7A 71.852 1080 250 50 1079 2131 206910807 206911859 1.510000e-65 261.0
23 TraesCS3B01G107600 chr7A 77.055 292 55 9 4002 4287 206913658 206913943 2.040000e-34 158.0
24 TraesCS3B01G107600 chr7A 91.250 80 4 3 4012 4091 712180988 712181064 7.490000e-19 106.0
25 TraesCS3B01G107600 chr7D 71.733 1079 251 50 1080 2131 197610786 197611837 2.530000e-63 254.0
26 TraesCS3B01G107600 chr7B 73.529 612 142 20 1488 2089 161777037 161777638 1.190000e-51 215.0
27 TraesCS3B01G107600 chr7B 77.397 292 54 10 4002 4287 161779483 161779768 4.380000e-36 163.0
28 TraesCS3B01G107600 chr7B 88.462 130 15 0 1436 1565 698889300 698889429 2.040000e-34 158.0
29 TraesCS3B01G107600 chr7B 84.615 104 16 0 1126 1229 698888970 698889073 2.690000e-18 104.0
30 TraesCS3B01G107600 chr7B 92.857 70 1 2 399 464 710325325 710325256 1.250000e-16 99.0
31 TraesCS3B01G107600 chr7B 93.333 60 3 1 406 464 697558322 697558263 2.710000e-13 87.9
32 TraesCS3B01G107600 chr7B 97.674 43 1 0 422 464 713549361 713549403 2.110000e-09 75.0
33 TraesCS3B01G107600 chr5B 84.817 191 29 0 1492 1682 644452058 644451868 5.590000e-45 193.0
34 TraesCS3B01G107600 chrUn 88.462 130 15 0 1436 1565 87691277 87691406 2.040000e-34 158.0
35 TraesCS3B01G107600 chr6D 82.895 152 26 0 2251 2402 16852427 16852578 2.660000e-28 137.0
36 TraesCS3B01G107600 chr6D 90.110 91 7 2 1141 1230 22066636 22066547 3.460000e-22 117.0
37 TraesCS3B01G107600 chr6D 91.379 58 5 0 3141 3198 16853084 16853141 4.540000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G107600 chr3B 72949295 72954761 5466 False 10096.0 10096 100.000000 1 5467 1 chr3B.!!$F1 5466
1 TraesCS3B01G107600 chr3B 814631040 814631541 501 False 392.0 392 80.952000 2705 3226 1 chr3B.!!$F2 521
2 TraesCS3B01G107600 chr3D 46579428 46584514 5086 False 7762.0 7762 94.297000 1 5078 1 chr3D.!!$F1 5077
3 TraesCS3B01G107600 chr3D 605468785 605469322 537 True 448.0 448 81.818000 2669 3226 1 chr3D.!!$R1 557
4 TraesCS3B01G107600 chr3A 57943556 57948271 4715 True 2361.5 6953 97.338333 42 5117 3 chr3A.!!$R1 5075
5 TraesCS3B01G107600 chr1A 117244619 117247874 3255 False 2828.0 2828 82.476000 1047 4326 1 chr1A.!!$F1 3279
6 TraesCS3B01G107600 chr1D 111089329 111092589 3260 False 1445.5 2460 85.803500 1045 4326 2 chr1D.!!$F2 3281
7 TraesCS3B01G107600 chr1D 438833731 438834245 514 False 253.5 396 88.086000 2669 3226 2 chr1D.!!$F3 557
8 TraesCS3B01G107600 chr1B 169693862 169697123 3261 False 1409.0 2409 85.082000 1045 4326 2 chr1B.!!$F2 3281
9 TraesCS3B01G107600 chr6B 11954594 11955868 1274 False 966.0 966 80.478000 2320 3609 1 chr6B.!!$F1 1289
10 TraesCS3B01G107600 chr2A 20670386 20671418 1032 False 316.5 339 86.677000 1508 3123 2 chr2A.!!$F1 1615
11 TraesCS3B01G107600 chr7A 206910807 206913943 3136 False 209.5 261 74.453500 1079 4287 2 chr7A.!!$F2 3208
12 TraesCS3B01G107600 chr7D 197610786 197611837 1051 False 254.0 254 71.733000 1080 2131 1 chr7D.!!$F1 1051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 296 0.179062 GATCGATGAGGCCTGCAACT 60.179 55.000 12.0 0.0 0.00 3.16 F
504 523 0.179163 GCTTTACAATGTCAGCGGCC 60.179 55.000 0.0 0.0 0.00 6.13 F
724 753 0.467290 CCCTCTCTCTTCCTCCTCCG 60.467 65.000 0.0 0.0 0.00 4.63 F
2385 2459 1.078848 GCAGGAGATCGGCAACTGT 60.079 57.895 0.0 0.0 36.56 3.55 F
3852 4218 0.243095 GATCCTACGGGTACATCGCC 59.757 60.000 7.6 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 2243 0.744414 CCCAGAGGTACAACATGCGG 60.744 60.000 0.00 0.0 0.00 5.69 R
2778 3074 1.292223 GGCGCCAGACAGTGAGTTA 59.708 57.895 24.80 0.0 0.00 2.24 R
2931 3228 1.395826 GCTGGAGGTCGCCTGATAGT 61.396 60.000 2.98 0.0 31.76 2.12 R
3937 4355 0.109272 CAGATGACGTACTGCCGTGT 60.109 55.000 0.00 0.0 41.98 4.49 R
5414 5981 0.028505 GCATGTATGTCGGCTGCTTG 59.971 55.000 0.00 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 6.266131 TGCAACCATCTATCTTTCCCTTAT 57.734 37.500 0.00 0.00 0.00 1.73
235 239 3.479006 CGAAAGCAATTAGTCGTTGGTG 58.521 45.455 0.00 0.00 37.37 4.17
237 241 4.142902 CGAAAGCAATTAGTCGTTGGTGAT 60.143 41.667 0.00 0.00 37.37 3.06
241 245 3.873910 CAATTAGTCGTTGGTGATCCCT 58.126 45.455 0.00 0.00 0.00 4.20
243 247 1.481871 TAGTCGTTGGTGATCCCTCC 58.518 55.000 0.00 0.00 0.00 4.30
244 248 1.221021 GTCGTTGGTGATCCCTCCC 59.779 63.158 0.00 0.00 0.00 4.30
245 249 1.080354 TCGTTGGTGATCCCTCCCT 59.920 57.895 0.00 0.00 0.00 4.20
246 250 0.976073 TCGTTGGTGATCCCTCCCTC 60.976 60.000 0.00 0.00 0.00 4.30
247 251 0.978146 CGTTGGTGATCCCTCCCTCT 60.978 60.000 0.00 0.00 0.00 3.69
248 252 0.833949 GTTGGTGATCCCTCCCTCTC 59.166 60.000 0.00 0.00 0.00 3.20
249 253 0.417437 TTGGTGATCCCTCCCTCTCA 59.583 55.000 0.00 0.00 0.00 3.27
279 283 6.238484 GGAAATTTGAAACCAGATCGATCGAT 60.238 38.462 29.76 29.76 37.59 3.59
292 296 0.179062 GATCGATGAGGCCTGCAACT 60.179 55.000 12.00 0.00 0.00 3.16
296 300 0.251354 GATGAGGCCTGCAACTCTCA 59.749 55.000 12.00 12.79 40.04 3.27
305 309 5.065914 GGCCTGCAACTCTCATAATTATCA 58.934 41.667 0.00 0.00 0.00 2.15
340 344 8.980481 AACAACTGGGGATTACTAATCTATTG 57.020 34.615 8.41 8.26 38.01 1.90
341 345 7.518188 ACAACTGGGGATTACTAATCTATTGG 58.482 38.462 8.41 0.00 38.01 3.16
342 346 7.128883 ACAACTGGGGATTACTAATCTATTGGT 59.871 37.037 8.41 0.00 38.01 3.67
386 390 6.062095 CAGTGGATGGGGTAATAAACTAAGG 58.938 44.000 0.00 0.00 0.00 2.69
387 391 4.825634 GTGGATGGGGTAATAAACTAAGGC 59.174 45.833 0.00 0.00 0.00 4.35
389 393 5.044030 TGGATGGGGTAATAAACTAAGGCAA 60.044 40.000 0.00 0.00 0.00 4.52
504 523 0.179163 GCTTTACAATGTCAGCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
630 654 2.125552 TGCTGATTGCTCCGTCCG 60.126 61.111 0.00 0.00 43.37 4.79
641 665 4.753662 CCGTCCGTCTCCCTCCCA 62.754 72.222 0.00 0.00 0.00 4.37
644 668 4.393778 TCCGTCTCCCTCCCACCC 62.394 72.222 0.00 0.00 0.00 4.61
686 713 9.598517 TTTTCCATGGAGATATAAAATTTGCAC 57.401 29.630 15.53 0.00 0.00 4.57
724 753 0.467290 CCCTCTCTCTTCCTCCTCCG 60.467 65.000 0.00 0.00 0.00 4.63
812 860 6.931281 GCAAGTGCTCTGTTATTATCTATCCA 59.069 38.462 0.00 0.00 38.21 3.41
813 861 7.605691 GCAAGTGCTCTGTTATTATCTATCCAT 59.394 37.037 0.00 0.00 38.21 3.41
814 862 9.149225 CAAGTGCTCTGTTATTATCTATCCATC 57.851 37.037 0.00 0.00 0.00 3.51
815 863 7.846066 AGTGCTCTGTTATTATCTATCCATCC 58.154 38.462 0.00 0.00 0.00 3.51
816 864 7.455953 AGTGCTCTGTTATTATCTATCCATCCA 59.544 37.037 0.00 0.00 0.00 3.41
874 922 3.709987 AGATTTTGCTTGTGCTTGTGTC 58.290 40.909 0.00 0.00 40.48 3.67
875 923 2.292103 TTTTGCTTGTGCTTGTGTCC 57.708 45.000 0.00 0.00 40.48 4.02
932 980 2.509336 CGCCGCACCACCTCTTAG 60.509 66.667 0.00 0.00 0.00 2.18
980 1031 3.772025 AGTCCATTGTAGCTAGCTTGACT 59.228 43.478 24.88 19.63 0.00 3.41
981 1032 3.868077 GTCCATTGTAGCTAGCTTGACTG 59.132 47.826 24.88 15.07 0.00 3.51
995 1046 1.134075 GACTGCTCGCTCGTCGTAA 59.866 57.895 0.00 0.00 39.67 3.18
998 1049 2.202440 GCTCGCTCGTCGTAAGCA 60.202 61.111 6.72 0.00 39.81 3.91
999 1050 1.586564 GCTCGCTCGTCGTAAGCAT 60.587 57.895 6.72 0.00 39.81 3.79
1185 1242 3.282745 GAGCTCCGCGGACAAGTCA 62.283 63.158 27.28 0.94 0.00 3.41
2277 2351 2.355837 GACCTGTCGCAGAACGCA 60.356 61.111 8.20 0.00 42.60 5.24
2283 2357 1.661821 GTCGCAGAACGCACTCACT 60.662 57.895 0.00 0.00 42.60 3.41
2385 2459 1.078848 GCAGGAGATCGGCAACTGT 60.079 57.895 0.00 0.00 36.56 3.55
2730 3022 1.465200 GGCTCTCCGGTCAGATACCC 61.465 65.000 0.00 0.00 46.62 3.69
2931 3228 1.947146 CGACGTCTCGCACAACCAA 60.947 57.895 14.70 0.00 31.91 3.67
2937 3234 2.683968 GTCTCGCACAACCAACTATCA 58.316 47.619 0.00 0.00 0.00 2.15
3240 3573 1.911293 GCTCGATTTTCAGCGGTGCA 61.911 55.000 10.38 0.00 0.00 4.57
3579 3912 1.980772 CGACTACCTCCCCAACGGT 60.981 63.158 0.00 0.00 37.31 4.83
3637 3979 2.923035 CCGTGGTGGAGTGGGAGT 60.923 66.667 0.00 0.00 42.00 3.85
3852 4218 0.243095 GATCCTACGGGTACATCGCC 59.757 60.000 7.60 0.00 0.00 5.54
3919 4337 3.805422 CACCGTACTTTTGCTGTCAGTTA 59.195 43.478 0.93 0.00 0.00 2.24
3936 4354 7.879070 TGTCAGTTATAGTGAAGTTCGTTACT 58.121 34.615 0.00 0.00 39.32 2.24
3937 4355 9.002600 TGTCAGTTATAGTGAAGTTCGTTACTA 57.997 33.333 4.54 4.54 35.54 1.82
3938 4356 9.271738 GTCAGTTATAGTGAAGTTCGTTACTAC 57.728 37.037 4.23 0.00 35.54 2.73
3939 4357 9.002600 TCAGTTATAGTGAAGTTCGTTACTACA 57.997 33.333 4.23 0.00 35.54 2.74
3940 4358 9.059485 CAGTTATAGTGAAGTTCGTTACTACAC 57.941 37.037 4.23 0.00 35.54 2.90
3941 4359 7.959651 AGTTATAGTGAAGTTCGTTACTACACG 59.040 37.037 4.23 0.00 41.78 4.49
3972 4390 6.153340 ACGTCATCTGATCCCATTCAAATTTT 59.847 34.615 0.00 0.00 0.00 1.82
3973 4391 6.694411 CGTCATCTGATCCCATTCAAATTTTC 59.306 38.462 0.00 0.00 0.00 2.29
3976 4394 5.969423 TCTGATCCCATTCAAATTTTCTGC 58.031 37.500 0.00 0.00 0.00 4.26
3978 4396 5.969423 TGATCCCATTCAAATTTTCTGCTC 58.031 37.500 0.00 0.00 0.00 4.26
3992 4410 1.107114 CTGCTCCAGAGTACGGATGT 58.893 55.000 0.00 0.00 32.44 3.06
4364 4785 1.371558 GTCCTTCGGCAAGTGGAGT 59.628 57.895 0.00 0.00 0.00 3.85
4423 4844 4.416738 GCAGGCCCAGACCCAGAC 62.417 72.222 0.00 0.00 0.00 3.51
4424 4845 3.721706 CAGGCCCAGACCCAGACC 61.722 72.222 0.00 0.00 0.00 3.85
4617 5039 2.494530 CGACCCAGGAGCTAGCCTC 61.495 68.421 12.13 8.32 35.66 4.70
4645 5067 3.770040 CAGGGTGGGATCGACGCA 61.770 66.667 11.57 0.00 39.10 5.24
4648 5070 2.499205 GGTGGGATCGACGCATCA 59.501 61.111 9.37 0.00 43.03 3.07
4659 5081 2.125147 CGCATCATGTGGTCCGGT 60.125 61.111 0.00 0.00 0.00 5.28
4889 5316 2.622903 ATTGCCGTGCATGCATCTGC 62.623 55.000 25.64 24.55 38.76 4.26
4890 5317 4.899687 GCCGTGCATGCATCTGCG 62.900 66.667 25.64 21.45 45.30 5.18
4891 5318 4.899687 CCGTGCATGCATCTGCGC 62.900 66.667 25.64 14.44 45.30 6.09
4893 5320 4.899687 GTGCATGCATCTGCGCCG 62.900 66.667 25.64 0.00 44.85 6.46
4896 5323 2.588596 CATGCATCTGCGCCGGTA 60.589 61.111 4.18 0.00 45.83 4.02
4897 5324 2.280389 ATGCATCTGCGCCGGTAG 60.280 61.111 4.18 0.00 45.83 3.18
4898 5325 3.814615 ATGCATCTGCGCCGGTAGG 62.815 63.158 4.18 0.00 45.83 3.18
4931 5372 4.824166 GCTGCCGCTGTGCAATCG 62.824 66.667 0.00 0.00 41.51 3.34
5073 5521 2.258897 GCTAGGCGGCGGATACTC 59.741 66.667 9.78 0.00 0.00 2.59
5081 5648 1.038280 CGGCGGATACTCCTTTAGGT 58.962 55.000 0.00 0.00 40.19 3.08
5119 5686 3.443045 CACGCTGGGCCATGGTTC 61.443 66.667 14.67 6.56 0.00 3.62
5120 5687 3.965258 ACGCTGGGCCATGGTTCA 61.965 61.111 14.67 11.01 0.00 3.18
5121 5688 3.136123 CGCTGGGCCATGGTTCAG 61.136 66.667 23.45 23.45 0.00 3.02
5122 5689 2.356278 GCTGGGCCATGGTTCAGA 59.644 61.111 28.62 8.55 0.00 3.27
5123 5690 1.751927 GCTGGGCCATGGTTCAGAG 60.752 63.158 28.62 15.93 0.00 3.35
5124 5691 1.751927 CTGGGCCATGGTTCAGAGC 60.752 63.158 23.42 5.19 0.00 4.09
5125 5692 2.207501 CTGGGCCATGGTTCAGAGCT 62.208 60.000 23.42 0.00 0.00 4.09
5126 5693 1.751927 GGGCCATGGTTCAGAGCTG 60.752 63.158 14.67 0.00 0.00 4.24
5127 5694 1.001641 GGCCATGGTTCAGAGCTGT 60.002 57.895 14.67 0.00 0.00 4.40
5128 5695 1.310933 GGCCATGGTTCAGAGCTGTG 61.311 60.000 14.67 4.05 0.00 3.66
5129 5696 1.310933 GCCATGGTTCAGAGCTGTGG 61.311 60.000 14.67 0.00 34.80 4.17
5130 5697 0.679002 CCATGGTTCAGAGCTGTGGG 60.679 60.000 11.47 0.00 0.00 4.61
5131 5698 0.037303 CATGGTTCAGAGCTGTGGGT 59.963 55.000 11.47 0.00 0.00 4.51
5132 5699 0.037303 ATGGTTCAGAGCTGTGGGTG 59.963 55.000 11.47 0.00 0.00 4.61
5133 5700 1.302832 GGTTCAGAGCTGTGGGTGG 60.303 63.158 11.47 0.00 0.00 4.61
5134 5701 1.302832 GTTCAGAGCTGTGGGTGGG 60.303 63.158 11.47 0.00 0.00 4.61
5135 5702 2.528818 TTCAGAGCTGTGGGTGGGG 61.529 63.158 11.47 0.00 0.00 4.96
5136 5703 4.729918 CAGAGCTGTGGGTGGGGC 62.730 72.222 2.14 0.00 0.00 5.80
5137 5704 4.990910 AGAGCTGTGGGTGGGGCT 62.991 66.667 0.00 0.00 37.77 5.19
5138 5705 4.416738 GAGCTGTGGGTGGGGCTC 62.417 72.222 0.00 0.00 43.07 4.70
5141 5708 3.953775 CTGTGGGTGGGGCTCGTT 61.954 66.667 0.00 0.00 0.00 3.85
5142 5709 4.263572 TGTGGGTGGGGCTCGTTG 62.264 66.667 0.00 0.00 0.00 4.10
5143 5710 3.948719 GTGGGTGGGGCTCGTTGA 61.949 66.667 0.00 0.00 0.00 3.18
5144 5711 3.172106 TGGGTGGGGCTCGTTGAA 61.172 61.111 0.00 0.00 0.00 2.69
5145 5712 2.671963 GGGTGGGGCTCGTTGAAC 60.672 66.667 0.00 0.00 0.00 3.18
5146 5713 2.112297 GGTGGGGCTCGTTGAACA 59.888 61.111 0.00 0.00 0.00 3.18
5147 5714 1.303317 GGTGGGGCTCGTTGAACAT 60.303 57.895 0.00 0.00 0.00 2.71
5148 5715 0.893727 GGTGGGGCTCGTTGAACATT 60.894 55.000 0.00 0.00 0.00 2.71
5149 5716 0.521735 GTGGGGCTCGTTGAACATTC 59.478 55.000 0.00 0.00 0.00 2.67
5150 5717 0.953471 TGGGGCTCGTTGAACATTCG 60.953 55.000 0.00 0.00 0.00 3.34
5151 5718 0.953960 GGGGCTCGTTGAACATTCGT 60.954 55.000 0.00 0.00 0.00 3.85
5152 5719 0.442699 GGGCTCGTTGAACATTCGTC 59.557 55.000 0.00 0.00 0.00 4.20
5153 5720 1.429463 GGCTCGTTGAACATTCGTCT 58.571 50.000 0.00 0.00 0.00 4.18
5154 5721 1.126846 GGCTCGTTGAACATTCGTCTG 59.873 52.381 0.00 0.00 0.00 3.51
5155 5722 1.462541 GCTCGTTGAACATTCGTCTGC 60.463 52.381 0.00 0.00 0.00 4.26
5156 5723 1.126846 CTCGTTGAACATTCGTCTGCC 59.873 52.381 0.00 0.00 0.00 4.85
5157 5724 1.148310 CGTTGAACATTCGTCTGCCT 58.852 50.000 0.00 0.00 0.00 4.75
5158 5725 1.136252 CGTTGAACATTCGTCTGCCTG 60.136 52.381 0.00 0.00 0.00 4.85
5159 5726 1.873591 GTTGAACATTCGTCTGCCTGT 59.126 47.619 0.00 0.00 0.00 4.00
5160 5727 1.795768 TGAACATTCGTCTGCCTGTC 58.204 50.000 0.00 0.00 0.00 3.51
5161 5728 1.344438 TGAACATTCGTCTGCCTGTCT 59.656 47.619 0.00 0.00 0.00 3.41
5162 5729 2.560981 TGAACATTCGTCTGCCTGTCTA 59.439 45.455 0.00 0.00 0.00 2.59
5163 5730 2.656560 ACATTCGTCTGCCTGTCTAC 57.343 50.000 0.00 0.00 0.00 2.59
5164 5731 1.893137 ACATTCGTCTGCCTGTCTACA 59.107 47.619 0.00 0.00 0.00 2.74
5165 5732 2.094494 ACATTCGTCTGCCTGTCTACAG 60.094 50.000 3.02 3.02 43.40 2.74
5166 5733 0.243907 TTCGTCTGCCTGTCTACAGC 59.756 55.000 4.53 1.74 42.47 4.40
5167 5734 0.609406 TCGTCTGCCTGTCTACAGCT 60.609 55.000 4.53 0.00 42.47 4.24
5168 5735 0.244994 CGTCTGCCTGTCTACAGCTT 59.755 55.000 4.53 0.00 42.47 3.74
5169 5736 1.734047 CGTCTGCCTGTCTACAGCTTC 60.734 57.143 4.53 0.00 42.47 3.86
5170 5737 1.273606 GTCTGCCTGTCTACAGCTTCA 59.726 52.381 4.53 2.09 42.47 3.02
5171 5738 2.093764 GTCTGCCTGTCTACAGCTTCAT 60.094 50.000 4.53 0.00 42.47 2.57
5172 5739 2.093816 TCTGCCTGTCTACAGCTTCATG 60.094 50.000 4.53 0.00 42.47 3.07
5173 5740 1.901833 TGCCTGTCTACAGCTTCATGA 59.098 47.619 4.53 0.00 42.47 3.07
5174 5741 2.302733 TGCCTGTCTACAGCTTCATGAA 59.697 45.455 8.12 8.12 42.47 2.57
5175 5742 3.054875 TGCCTGTCTACAGCTTCATGAAT 60.055 43.478 8.96 0.00 42.47 2.57
5176 5743 3.311871 GCCTGTCTACAGCTTCATGAATG 59.688 47.826 8.96 8.04 42.47 2.67
5177 5744 4.763073 CCTGTCTACAGCTTCATGAATGA 58.237 43.478 14.50 2.75 42.47 2.57
5178 5745 4.809958 CCTGTCTACAGCTTCATGAATGAG 59.190 45.833 14.50 7.60 42.47 2.90
5179 5746 5.411831 TGTCTACAGCTTCATGAATGAGT 57.588 39.130 14.50 12.27 38.19 3.41
5180 5747 6.406288 CCTGTCTACAGCTTCATGAATGAGTA 60.406 42.308 14.50 12.67 42.47 2.59
5181 5748 6.935167 TGTCTACAGCTTCATGAATGAGTAA 58.065 36.000 14.50 4.89 38.19 2.24
5182 5749 7.386059 TGTCTACAGCTTCATGAATGAGTAAA 58.614 34.615 14.50 0.89 38.19 2.01
5183 5750 7.547019 TGTCTACAGCTTCATGAATGAGTAAAG 59.453 37.037 14.50 6.82 38.19 1.85
5184 5751 5.557891 ACAGCTTCATGAATGAGTAAAGC 57.442 39.130 14.50 9.39 37.26 3.51
5185 5752 5.005740 ACAGCTTCATGAATGAGTAAAGCA 58.994 37.500 14.50 0.00 38.66 3.91
5186 5753 5.106396 ACAGCTTCATGAATGAGTAAAGCAC 60.106 40.000 14.50 0.00 38.66 4.40
5187 5754 5.123502 CAGCTTCATGAATGAGTAAAGCACT 59.876 40.000 8.96 0.00 38.66 4.40
5194 5761 3.403276 GAGTAAAGCACTCGACGCT 57.597 52.632 0.00 0.00 44.19 5.07
5195 5762 1.261097 GAGTAAAGCACTCGACGCTC 58.739 55.000 5.12 0.00 44.19 5.03
5196 5763 0.882474 AGTAAAGCACTCGACGCTCT 59.118 50.000 5.12 0.00 39.29 4.09
5197 5764 1.269998 AGTAAAGCACTCGACGCTCTT 59.730 47.619 5.12 5.34 39.29 2.85
5198 5765 1.649662 GTAAAGCACTCGACGCTCTTC 59.350 52.381 5.12 0.00 39.29 2.87
5199 5766 0.315568 AAAGCACTCGACGCTCTTCT 59.684 50.000 5.12 0.00 39.29 2.85
5200 5767 0.315568 AAGCACTCGACGCTCTTCTT 59.684 50.000 5.12 0.00 39.29 2.52
5201 5768 0.387878 AGCACTCGACGCTCTTCTTG 60.388 55.000 0.00 0.00 33.35 3.02
5202 5769 0.664767 GCACTCGACGCTCTTCTTGT 60.665 55.000 0.00 0.00 0.00 3.16
5203 5770 1.401148 GCACTCGACGCTCTTCTTGTA 60.401 52.381 0.00 0.00 0.00 2.41
5204 5771 2.510874 CACTCGACGCTCTTCTTGTAG 58.489 52.381 0.00 0.00 0.00 2.74
5205 5772 1.469308 ACTCGACGCTCTTCTTGTAGG 59.531 52.381 0.00 0.00 0.00 3.18
5206 5773 0.170561 TCGACGCTCTTCTTGTAGGC 59.829 55.000 0.00 0.00 0.00 3.93
5207 5774 0.109272 CGACGCTCTTCTTGTAGGCA 60.109 55.000 0.00 0.00 0.00 4.75
5208 5775 1.634702 GACGCTCTTCTTGTAGGCAG 58.365 55.000 0.00 0.00 0.00 4.85
5209 5776 0.390472 ACGCTCTTCTTGTAGGCAGC 60.390 55.000 0.00 0.00 0.00 5.25
5210 5777 0.108424 CGCTCTTCTTGTAGGCAGCT 60.108 55.000 0.00 0.00 0.00 4.24
5211 5778 1.674221 CGCTCTTCTTGTAGGCAGCTT 60.674 52.381 0.00 0.00 0.00 3.74
5212 5779 1.736681 GCTCTTCTTGTAGGCAGCTTG 59.263 52.381 0.00 0.00 0.00 4.01
5213 5780 1.736681 CTCTTCTTGTAGGCAGCTTGC 59.263 52.381 0.00 0.00 44.08 4.01
5222 5789 3.458653 GCAGCTTGCAGGGGAAAA 58.541 55.556 0.00 0.00 44.26 2.29
5223 5790 1.291272 GCAGCTTGCAGGGGAAAAG 59.709 57.895 0.00 0.00 44.26 2.27
5224 5791 1.969862 CAGCTTGCAGGGGAAAAGG 59.030 57.895 0.00 0.00 0.00 3.11
5225 5792 0.829182 CAGCTTGCAGGGGAAAAGGT 60.829 55.000 0.00 0.00 32.11 3.50
5226 5793 0.829182 AGCTTGCAGGGGAAAAGGTG 60.829 55.000 0.00 0.00 30.86 4.00
5227 5794 1.820010 GCTTGCAGGGGAAAAGGTGG 61.820 60.000 0.00 0.00 0.00 4.61
5228 5795 1.820010 CTTGCAGGGGAAAAGGTGGC 61.820 60.000 0.00 0.00 0.00 5.01
5229 5796 2.203625 GCAGGGGAAAAGGTGGCA 60.204 61.111 0.00 0.00 0.00 4.92
5230 5797 2.278330 GCAGGGGAAAAGGTGGCAG 61.278 63.158 0.00 0.00 0.00 4.85
5231 5798 1.153756 CAGGGGAAAAGGTGGCAGT 59.846 57.895 0.00 0.00 0.00 4.40
5232 5799 1.153756 AGGGGAAAAGGTGGCAGTG 59.846 57.895 0.00 0.00 0.00 3.66
5233 5800 2.574018 GGGGAAAAGGTGGCAGTGC 61.574 63.158 6.55 6.55 0.00 4.40
5246 5813 1.742761 GCAGTGCCAGATTTAGAGCA 58.257 50.000 2.85 0.00 0.00 4.26
5247 5814 2.086869 GCAGTGCCAGATTTAGAGCAA 58.913 47.619 2.85 0.00 36.91 3.91
5248 5815 2.159462 GCAGTGCCAGATTTAGAGCAAC 60.159 50.000 2.85 0.00 36.91 4.17
5249 5816 3.341823 CAGTGCCAGATTTAGAGCAACT 58.658 45.455 0.00 0.00 36.91 3.16
5250 5817 3.373439 CAGTGCCAGATTTAGAGCAACTC 59.627 47.826 0.00 0.00 36.91 3.01
5251 5818 2.680339 GTGCCAGATTTAGAGCAACTCC 59.320 50.000 0.00 0.00 36.91 3.85
5252 5819 2.305635 TGCCAGATTTAGAGCAACTCCA 59.694 45.455 0.00 0.00 30.97 3.86
5253 5820 3.244875 TGCCAGATTTAGAGCAACTCCAA 60.245 43.478 0.00 0.00 30.97 3.53
5254 5821 3.127721 GCCAGATTTAGAGCAACTCCAAC 59.872 47.826 0.00 0.00 0.00 3.77
5255 5822 3.372206 CCAGATTTAGAGCAACTCCAACG 59.628 47.826 0.00 0.00 0.00 4.10
5256 5823 3.003480 AGATTTAGAGCAACTCCAACGC 58.997 45.455 0.00 0.00 0.00 4.84
5257 5824 1.519408 TTTAGAGCAACTCCAACGCC 58.481 50.000 0.00 0.00 0.00 5.68
5258 5825 0.394938 TTAGAGCAACTCCAACGCCA 59.605 50.000 0.00 0.00 0.00 5.69
5259 5826 0.394938 TAGAGCAACTCCAACGCCAA 59.605 50.000 0.00 0.00 0.00 4.52
5260 5827 0.465460 AGAGCAACTCCAACGCCAAA 60.465 50.000 0.00 0.00 0.00 3.28
5261 5828 0.317854 GAGCAACTCCAACGCCAAAC 60.318 55.000 0.00 0.00 0.00 2.93
5262 5829 1.034838 AGCAACTCCAACGCCAAACA 61.035 50.000 0.00 0.00 0.00 2.83
5263 5830 0.594796 GCAACTCCAACGCCAAACAG 60.595 55.000 0.00 0.00 0.00 3.16
5264 5831 1.021202 CAACTCCAACGCCAAACAGA 58.979 50.000 0.00 0.00 0.00 3.41
5265 5832 1.021968 AACTCCAACGCCAAACAGAC 58.978 50.000 0.00 0.00 0.00 3.51
5266 5833 1.157870 ACTCCAACGCCAAACAGACG 61.158 55.000 0.00 0.00 0.00 4.18
5267 5834 0.878523 CTCCAACGCCAAACAGACGA 60.879 55.000 0.00 0.00 0.00 4.20
5268 5835 0.878523 TCCAACGCCAAACAGACGAG 60.879 55.000 0.00 0.00 0.00 4.18
5269 5836 1.082756 CAACGCCAAACAGACGAGC 60.083 57.895 0.00 0.00 0.00 5.03
5270 5837 1.522806 AACGCCAAACAGACGAGCA 60.523 52.632 0.00 0.00 0.00 4.26
5271 5838 1.498865 AACGCCAAACAGACGAGCAG 61.499 55.000 0.00 0.00 0.00 4.24
5272 5839 1.956170 CGCCAAACAGACGAGCAGT 60.956 57.895 0.00 0.00 0.00 4.40
5273 5840 1.498865 CGCCAAACAGACGAGCAGTT 61.499 55.000 0.00 0.00 0.00 3.16
5274 5841 0.663153 GCCAAACAGACGAGCAGTTT 59.337 50.000 0.00 0.00 36.75 2.66
5277 5844 2.286418 CCAAACAGACGAGCAGTTTGTC 60.286 50.000 20.10 0.00 45.97 3.18
5278 5845 1.583054 AACAGACGAGCAGTTTGTCC 58.417 50.000 8.52 0.00 45.97 4.02
5279 5846 0.597637 ACAGACGAGCAGTTTGTCCG 60.598 55.000 1.05 0.00 43.70 4.79
5280 5847 0.597637 CAGACGAGCAGTTTGTCCGT 60.598 55.000 1.05 0.00 40.56 4.69
5281 5848 0.104304 AGACGAGCAGTTTGTCCGTT 59.896 50.000 1.05 0.00 40.56 4.44
5282 5849 0.935196 GACGAGCAGTTTGTCCGTTT 59.065 50.000 0.00 0.00 34.59 3.60
5283 5850 0.655733 ACGAGCAGTTTGTCCGTTTG 59.344 50.000 0.00 0.00 0.00 2.93
5284 5851 0.041312 CGAGCAGTTTGTCCGTTTGG 60.041 55.000 0.00 0.00 0.00 3.28
5285 5852 1.021968 GAGCAGTTTGTCCGTTTGGT 58.978 50.000 0.00 0.00 36.30 3.67
5286 5853 1.404035 GAGCAGTTTGTCCGTTTGGTT 59.596 47.619 0.00 0.00 36.30 3.67
5287 5854 1.822371 AGCAGTTTGTCCGTTTGGTTT 59.178 42.857 0.00 0.00 36.30 3.27
5288 5855 2.159296 AGCAGTTTGTCCGTTTGGTTTC 60.159 45.455 0.00 0.00 36.30 2.78
5289 5856 2.159296 GCAGTTTGTCCGTTTGGTTTCT 60.159 45.455 0.00 0.00 36.30 2.52
5290 5857 3.691498 CAGTTTGTCCGTTTGGTTTCTC 58.309 45.455 0.00 0.00 36.30 2.87
5291 5858 2.686405 AGTTTGTCCGTTTGGTTTCTCC 59.314 45.455 0.00 0.00 36.30 3.71
5292 5859 2.421751 TTGTCCGTTTGGTTTCTCCA 57.578 45.000 0.00 0.00 45.60 3.86
5293 5860 2.649531 TGTCCGTTTGGTTTCTCCAT 57.350 45.000 0.00 0.00 46.60 3.41
5294 5861 2.500229 TGTCCGTTTGGTTTCTCCATC 58.500 47.619 0.00 0.00 46.60 3.51
5295 5862 2.105821 TGTCCGTTTGGTTTCTCCATCT 59.894 45.455 0.00 0.00 46.60 2.90
5296 5863 2.484264 GTCCGTTTGGTTTCTCCATCTG 59.516 50.000 0.00 0.00 46.60 2.90
5297 5864 2.105821 TCCGTTTGGTTTCTCCATCTGT 59.894 45.455 0.00 0.00 46.60 3.41
5298 5865 2.226437 CCGTTTGGTTTCTCCATCTGTG 59.774 50.000 0.00 0.00 46.60 3.66
5299 5866 2.878406 CGTTTGGTTTCTCCATCTGTGT 59.122 45.455 0.00 0.00 46.60 3.72
5300 5867 3.058914 CGTTTGGTTTCTCCATCTGTGTC 60.059 47.826 0.00 0.00 46.60 3.67
5301 5868 4.137543 GTTTGGTTTCTCCATCTGTGTCT 58.862 43.478 0.00 0.00 46.60 3.41
5302 5869 3.407424 TGGTTTCTCCATCTGTGTCTG 57.593 47.619 0.00 0.00 41.93 3.51
5303 5870 2.972021 TGGTTTCTCCATCTGTGTCTGA 59.028 45.455 0.00 0.00 41.93 3.27
5304 5871 3.244215 TGGTTTCTCCATCTGTGTCTGAC 60.244 47.826 0.00 0.00 41.93 3.51
5305 5872 3.007398 GGTTTCTCCATCTGTGTCTGACT 59.993 47.826 9.51 0.00 35.97 3.41
5306 5873 3.949842 TTCTCCATCTGTGTCTGACTG 57.050 47.619 9.51 0.00 0.00 3.51
5307 5874 3.160679 TCTCCATCTGTGTCTGACTGA 57.839 47.619 9.51 5.42 36.99 3.41
5308 5875 3.706183 TCTCCATCTGTGTCTGACTGAT 58.294 45.455 9.51 7.39 42.37 2.90
5311 5878 2.290531 ATCTGTGTCTGACTGATGCG 57.709 50.000 9.51 0.00 40.66 4.73
5312 5879 0.389037 TCTGTGTCTGACTGATGCGC 60.389 55.000 9.51 0.00 0.00 6.09
5313 5880 1.357258 CTGTGTCTGACTGATGCGCC 61.357 60.000 4.18 0.00 0.00 6.53
5314 5881 2.103042 GTGTCTGACTGATGCGCCC 61.103 63.158 4.18 0.00 0.00 6.13
5315 5882 2.265739 GTCTGACTGATGCGCCCA 59.734 61.111 4.18 1.49 0.00 5.36
5316 5883 1.375908 GTCTGACTGATGCGCCCAA 60.376 57.895 4.18 0.00 0.00 4.12
5317 5884 1.375908 TCTGACTGATGCGCCCAAC 60.376 57.895 4.18 1.20 0.00 3.77
5318 5885 1.672030 CTGACTGATGCGCCCAACA 60.672 57.895 4.18 5.72 0.00 3.33
5319 5886 1.642037 CTGACTGATGCGCCCAACAG 61.642 60.000 4.18 11.51 44.66 3.16
5320 5887 2.360350 ACTGATGCGCCCAACAGG 60.360 61.111 12.58 0.00 43.76 4.00
5329 5896 4.095590 CCCAACAGGCCGATGTTT 57.904 55.556 7.61 0.00 41.41 2.83
5330 5897 2.350738 CCCAACAGGCCGATGTTTT 58.649 52.632 7.61 0.00 41.41 2.43
5331 5898 0.678950 CCCAACAGGCCGATGTTTTT 59.321 50.000 7.61 0.00 41.41 1.94
5351 5918 3.307339 TTTTCGTCACGTGTACAAAGC 57.693 42.857 16.51 0.00 0.00 3.51
5352 5919 1.923899 TTCGTCACGTGTACAAAGCA 58.076 45.000 16.51 0.00 0.00 3.91
5353 5920 1.923899 TCGTCACGTGTACAAAGCAA 58.076 45.000 16.51 0.00 0.00 3.91
5354 5921 1.855978 TCGTCACGTGTACAAAGCAAG 59.144 47.619 16.51 0.00 0.00 4.01
5355 5922 1.591158 CGTCACGTGTACAAAGCAAGT 59.409 47.619 16.51 0.00 0.00 3.16
5356 5923 2.029970 CGTCACGTGTACAAAGCAAGTT 59.970 45.455 16.51 0.00 0.00 2.66
5357 5924 3.350912 GTCACGTGTACAAAGCAAGTTG 58.649 45.455 16.51 0.00 34.52 3.16
5358 5925 2.108700 CACGTGTACAAAGCAAGTTGC 58.891 47.619 20.44 20.44 45.46 4.17
5359 5926 1.064952 ACGTGTACAAAGCAAGTTGCC 59.935 47.619 24.02 8.33 46.52 4.52
5360 5927 1.599419 CGTGTACAAAGCAAGTTGCCC 60.599 52.381 24.02 6.30 46.52 5.36
5361 5928 1.681264 GTGTACAAAGCAAGTTGCCCT 59.319 47.619 24.02 9.23 46.52 5.19
5362 5929 2.100749 GTGTACAAAGCAAGTTGCCCTT 59.899 45.455 24.02 14.79 46.52 3.95
5363 5930 2.763448 TGTACAAAGCAAGTTGCCCTTT 59.237 40.909 24.02 15.69 46.52 3.11
5364 5931 3.954904 TGTACAAAGCAAGTTGCCCTTTA 59.045 39.130 24.02 8.32 46.52 1.85
5365 5932 4.402793 TGTACAAAGCAAGTTGCCCTTTAA 59.597 37.500 24.02 8.13 46.52 1.52
5366 5933 4.479786 ACAAAGCAAGTTGCCCTTTAAA 57.520 36.364 24.02 0.00 46.52 1.52
5367 5934 4.837972 ACAAAGCAAGTTGCCCTTTAAAA 58.162 34.783 24.02 0.00 46.52 1.52
5368 5935 5.249420 ACAAAGCAAGTTGCCCTTTAAAAA 58.751 33.333 24.02 0.00 46.52 1.94
5397 5964 2.972505 CGGCCAGCGTCAACAGTT 60.973 61.111 2.24 0.00 0.00 3.16
5398 5965 2.946762 GGCCAGCGTCAACAGTTC 59.053 61.111 0.00 0.00 0.00 3.01
5399 5966 1.891919 GGCCAGCGTCAACAGTTCA 60.892 57.895 0.00 0.00 0.00 3.18
5400 5967 1.237285 GGCCAGCGTCAACAGTTCAT 61.237 55.000 0.00 0.00 0.00 2.57
5401 5968 0.593128 GCCAGCGTCAACAGTTCATT 59.407 50.000 0.00 0.00 0.00 2.57
5402 5969 1.400242 GCCAGCGTCAACAGTTCATTC 60.400 52.381 0.00 0.00 0.00 2.67
5403 5970 1.197721 CCAGCGTCAACAGTTCATTCC 59.802 52.381 0.00 0.00 0.00 3.01
5404 5971 1.136252 CAGCGTCAACAGTTCATTCCG 60.136 52.381 0.00 0.00 0.00 4.30
5405 5972 0.165944 GCGTCAACAGTTCATTCCGG 59.834 55.000 0.00 0.00 0.00 5.14
5406 5973 0.165944 CGTCAACAGTTCATTCCGGC 59.834 55.000 0.00 0.00 0.00 6.13
5407 5974 0.165944 GTCAACAGTTCATTCCGGCG 59.834 55.000 0.00 0.00 0.00 6.46
5408 5975 0.953471 TCAACAGTTCATTCCGGCGG 60.953 55.000 22.51 22.51 0.00 6.13
5409 5976 1.072505 AACAGTTCATTCCGGCGGT 59.927 52.632 27.32 4.04 0.00 5.68
5410 5977 0.953960 AACAGTTCATTCCGGCGGTC 60.954 55.000 27.32 10.35 0.00 4.79
5411 5978 1.375396 CAGTTCATTCCGGCGGTCA 60.375 57.895 27.32 14.63 0.00 4.02
5412 5979 0.744414 CAGTTCATTCCGGCGGTCAT 60.744 55.000 27.32 16.38 0.00 3.06
5413 5980 0.828022 AGTTCATTCCGGCGGTCATA 59.172 50.000 27.32 10.44 0.00 2.15
5414 5981 0.935196 GTTCATTCCGGCGGTCATAC 59.065 55.000 27.32 14.52 0.00 2.39
5415 5982 0.537653 TTCATTCCGGCGGTCATACA 59.462 50.000 27.32 1.27 0.00 2.29
5416 5983 0.537653 TCATTCCGGCGGTCATACAA 59.462 50.000 27.32 12.18 0.00 2.41
5417 5984 0.937304 CATTCCGGCGGTCATACAAG 59.063 55.000 27.32 3.89 0.00 3.16
5418 5985 0.814010 ATTCCGGCGGTCATACAAGC 60.814 55.000 27.32 0.00 0.00 4.01
5419 5986 2.125310 CCGGCGGTCATACAAGCA 60.125 61.111 19.97 0.00 0.00 3.91
5420 5987 2.173669 CCGGCGGTCATACAAGCAG 61.174 63.158 19.97 0.00 0.00 4.24
5421 5988 2.813179 CGGCGGTCATACAAGCAGC 61.813 63.158 0.00 0.00 0.00 5.25
5422 5989 2.472909 GGCGGTCATACAAGCAGCC 61.473 63.158 0.00 0.00 36.08 4.85
5423 5990 2.813179 GCGGTCATACAAGCAGCCG 61.813 63.158 0.00 0.00 41.79 5.52
5424 5991 1.153647 CGGTCATACAAGCAGCCGA 60.154 57.895 0.00 0.00 41.45 5.54
5425 5992 1.421410 CGGTCATACAAGCAGCCGAC 61.421 60.000 0.00 0.00 41.45 4.79
5426 5993 0.391130 GGTCATACAAGCAGCCGACA 60.391 55.000 0.00 0.00 0.00 4.35
5427 5994 1.656652 GTCATACAAGCAGCCGACAT 58.343 50.000 0.00 0.00 0.00 3.06
5428 5995 2.483013 GGTCATACAAGCAGCCGACATA 60.483 50.000 0.00 0.00 0.00 2.29
5429 5996 2.540101 GTCATACAAGCAGCCGACATAC 59.460 50.000 0.00 0.00 0.00 2.39
5430 5997 2.167487 TCATACAAGCAGCCGACATACA 59.833 45.455 0.00 0.00 0.00 2.29
5431 5998 2.979814 TACAAGCAGCCGACATACAT 57.020 45.000 0.00 0.00 0.00 2.29
5432 5999 1.372582 ACAAGCAGCCGACATACATG 58.627 50.000 0.00 0.00 0.00 3.21
5433 6000 0.028505 CAAGCAGCCGACATACATGC 59.971 55.000 0.00 0.00 37.15 4.06
5434 6001 1.097547 AAGCAGCCGACATACATGCC 61.098 55.000 0.00 0.00 37.61 4.40
5435 6002 1.819208 GCAGCCGACATACATGCCA 60.819 57.895 0.00 0.00 0.00 4.92
5436 6003 1.779025 GCAGCCGACATACATGCCAG 61.779 60.000 0.00 0.00 0.00 4.85
5437 6004 1.524621 AGCCGACATACATGCCAGC 60.525 57.895 0.00 0.00 0.00 4.85
5438 6005 2.546494 GCCGACATACATGCCAGCC 61.546 63.158 0.00 0.00 0.00 4.85
5439 6006 1.146930 CCGACATACATGCCAGCCT 59.853 57.895 0.00 0.00 0.00 4.58
5440 6007 0.882042 CCGACATACATGCCAGCCTC 60.882 60.000 0.00 0.00 0.00 4.70
5441 6008 0.105593 CGACATACATGCCAGCCTCT 59.894 55.000 0.00 0.00 0.00 3.69
5442 6009 1.341209 CGACATACATGCCAGCCTCTA 59.659 52.381 0.00 0.00 0.00 2.43
5443 6010 2.224042 CGACATACATGCCAGCCTCTAA 60.224 50.000 0.00 0.00 0.00 2.10
5444 6011 3.741075 CGACATACATGCCAGCCTCTAAA 60.741 47.826 0.00 0.00 0.00 1.85
5445 6012 4.199310 GACATACATGCCAGCCTCTAAAA 58.801 43.478 0.00 0.00 0.00 1.52
5446 6013 4.599041 ACATACATGCCAGCCTCTAAAAA 58.401 39.130 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.534042 TCCATCGGAGAGGAGAAACT 57.466 50.000 0.00 0.00 43.16 2.66
7 8 0.103937 GTGCTTCCATCGGAGAGGAG 59.896 60.000 2.73 0.00 43.16 3.69
40 41 0.953960 CGGGAAGGTCCGGTGAAAAG 60.954 60.000 0.00 0.00 45.78 2.27
115 116 0.326264 GCTCTTGCTCCTCAGGGAAA 59.674 55.000 0.00 0.00 41.69 3.13
163 167 2.095532 GTGTGATGCTTGATCAGTGAGC 59.904 50.000 10.38 10.38 42.00 4.26
164 168 2.676839 GGTGTGATGCTTGATCAGTGAG 59.323 50.000 0.00 0.00 42.00 3.51
166 170 2.676839 GAGGTGTGATGCTTGATCAGTG 59.323 50.000 0.00 0.00 42.00 3.66
167 171 2.570752 AGAGGTGTGATGCTTGATCAGT 59.429 45.455 0.00 0.00 42.00 3.41
168 172 3.118702 AGAGAGGTGTGATGCTTGATCAG 60.119 47.826 0.00 0.00 42.00 2.90
169 173 2.836372 AGAGAGGTGTGATGCTTGATCA 59.164 45.455 0.00 0.00 38.87 2.92
170 174 3.540314 AGAGAGGTGTGATGCTTGATC 57.460 47.619 0.00 0.00 0.00 2.92
171 175 3.996921 AAGAGAGGTGTGATGCTTGAT 57.003 42.857 0.00 0.00 0.00 2.57
235 239 1.460497 GGGGTGAGAGGGAGGGATC 60.460 68.421 0.00 0.00 0.00 3.36
237 241 4.075793 CGGGGTGAGAGGGAGGGA 62.076 72.222 0.00 0.00 0.00 4.20
241 245 0.549169 AATTTCCGGGGTGAGAGGGA 60.549 55.000 0.00 0.00 0.00 4.20
243 247 1.004277 TCAAATTTCCGGGGTGAGAGG 59.996 52.381 0.00 0.00 0.00 3.69
244 248 2.489938 TCAAATTTCCGGGGTGAGAG 57.510 50.000 0.00 0.00 0.00 3.20
245 249 2.888414 GTTTCAAATTTCCGGGGTGAGA 59.112 45.455 0.00 0.00 0.00 3.27
246 250 2.029380 GGTTTCAAATTTCCGGGGTGAG 60.029 50.000 0.00 0.00 0.00 3.51
247 251 1.964933 GGTTTCAAATTTCCGGGGTGA 59.035 47.619 0.00 0.00 0.00 4.02
248 252 1.689273 TGGTTTCAAATTTCCGGGGTG 59.311 47.619 0.00 0.00 0.00 4.61
249 253 1.967779 CTGGTTTCAAATTTCCGGGGT 59.032 47.619 0.00 0.00 0.00 4.95
279 283 1.571955 TATGAGAGTTGCAGGCCTCA 58.428 50.000 0.00 13.75 39.60 3.86
292 296 8.217111 TGTTTATGCCTGGTGATAATTATGAGA 58.783 33.333 1.78 0.00 0.00 3.27
296 300 8.632679 CAGTTGTTTATGCCTGGTGATAATTAT 58.367 33.333 0.00 0.00 0.00 1.28
305 309 1.549950 CCCCAGTTGTTTATGCCTGGT 60.550 52.381 0.00 0.00 42.39 4.00
338 342 4.513692 CAGACTGTCGATTAACCAAACCAA 59.486 41.667 1.52 0.00 0.00 3.67
339 343 4.062293 CAGACTGTCGATTAACCAAACCA 58.938 43.478 1.52 0.00 0.00 3.67
340 344 3.120304 GCAGACTGTCGATTAACCAAACC 60.120 47.826 3.99 0.00 0.00 3.27
341 345 3.496884 TGCAGACTGTCGATTAACCAAAC 59.503 43.478 3.99 0.00 0.00 2.93
342 346 3.734463 TGCAGACTGTCGATTAACCAAA 58.266 40.909 3.99 0.00 0.00 3.28
386 390 2.159462 CCTTGTGCTTAGCTTAGCTTGC 60.159 50.000 23.89 17.34 41.76 4.01
387 391 3.338249 TCCTTGTGCTTAGCTTAGCTTG 58.662 45.455 23.89 7.30 41.76 4.01
389 393 2.093235 CCTCCTTGTGCTTAGCTTAGCT 60.093 50.000 23.89 12.67 41.76 3.32
504 523 5.799827 TTAACCAGATCAAAGGGTTTTGG 57.200 39.130 13.84 3.90 42.01 3.28
644 668 2.536997 AAAACGAGATCGGCAGGGGG 62.537 60.000 7.22 0.00 44.95 5.40
659 683 9.598517 TGCAAATTTTATATCTCCATGGAAAAC 57.401 29.630 17.00 1.77 0.00 2.43
709 736 3.007473 AGTAACGGAGGAGGAAGAGAG 57.993 52.381 0.00 0.00 0.00 3.20
710 737 4.581309 TTAGTAACGGAGGAGGAAGAGA 57.419 45.455 0.00 0.00 0.00 3.10
724 753 6.742109 TCACACTCACACTAGGTTTAGTAAC 58.258 40.000 0.00 0.00 38.05 2.50
812 860 5.222844 TGGAAGGGTAGATAGATGGATGGAT 60.223 44.000 0.00 0.00 0.00 3.41
813 861 4.109600 TGGAAGGGTAGATAGATGGATGGA 59.890 45.833 0.00 0.00 0.00 3.41
814 862 4.429505 TGGAAGGGTAGATAGATGGATGG 58.570 47.826 0.00 0.00 0.00 3.51
815 863 5.307976 TGTTGGAAGGGTAGATAGATGGATG 59.692 44.000 0.00 0.00 0.00 3.51
816 864 5.308237 GTGTTGGAAGGGTAGATAGATGGAT 59.692 44.000 0.00 0.00 0.00 3.41
874 922 1.200020 GGTGCGTCAAATTCAGAAGGG 59.800 52.381 0.00 0.00 0.00 3.95
875 923 1.879380 TGGTGCGTCAAATTCAGAAGG 59.121 47.619 0.00 0.00 0.00 3.46
932 980 3.103911 CCGCACCGTCGAACAGAC 61.104 66.667 0.00 0.00 46.16 3.51
943 994 1.298859 GGACTGATTGACACCGCACC 61.299 60.000 0.00 0.00 0.00 5.01
980 1031 2.202440 GCTTACGACGAGCGAGCA 60.202 61.111 0.00 0.00 44.57 4.26
981 1032 0.316772 TATGCTTACGACGAGCGAGC 60.317 55.000 0.00 5.76 44.57 5.03
995 1046 2.508716 CCCATATCAGGAGGCATATGCT 59.491 50.000 26.12 12.92 41.70 3.79
998 1049 1.487976 CGCCCATATCAGGAGGCATAT 59.512 52.381 0.30 0.00 46.08 1.78
999 1050 0.904649 CGCCCATATCAGGAGGCATA 59.095 55.000 0.30 0.00 46.08 3.14
1386 1451 2.527100 GCATTGTTGCTGAGATCAAGC 58.473 47.619 12.26 12.26 45.77 4.01
1722 1787 2.683572 TTGAGCTGGCCGAGGCTA 60.684 61.111 15.90 7.07 39.05 3.93
1875 1940 1.073722 CTTGAGGTTGCTGAGGCCA 59.926 57.895 5.01 0.00 37.74 5.36
2178 2243 0.744414 CCCAGAGGTACAACATGCGG 60.744 60.000 0.00 0.00 0.00 5.69
2778 3074 1.292223 GGCGCCAGACAGTGAGTTA 59.708 57.895 24.80 0.00 0.00 2.24
2784 3080 2.584608 GGTATGGCGCCAGACAGT 59.415 61.111 44.23 27.52 39.80 3.55
2931 3228 1.395826 GCTGGAGGTCGCCTGATAGT 61.396 60.000 2.98 0.00 31.76 2.12
2937 3234 3.965026 TAGCAGCTGGAGGTCGCCT 62.965 63.158 17.12 3.58 36.03 5.52
3678 4020 2.027625 GCAGTCGTGGTGCAGGTAC 61.028 63.158 0.00 0.00 40.86 3.34
3936 4354 1.131693 CAGATGACGTACTGCCGTGTA 59.868 52.381 0.00 0.00 41.98 2.90
3937 4355 0.109272 CAGATGACGTACTGCCGTGT 60.109 55.000 0.00 0.00 41.98 4.49
3938 4356 0.170339 TCAGATGACGTACTGCCGTG 59.830 55.000 10.64 0.00 41.98 4.94
3939 4357 1.065701 GATCAGATGACGTACTGCCGT 59.934 52.381 10.64 0.00 45.18 5.68
3940 4358 1.600663 GGATCAGATGACGTACTGCCG 60.601 57.143 10.64 0.00 34.57 5.69
3941 4359 1.269831 GGGATCAGATGACGTACTGCC 60.270 57.143 10.64 7.91 34.57 4.85
3972 4390 1.341089 ACATCCGTACTCTGGAGCAGA 60.341 52.381 0.00 0.00 39.30 4.26
3973 4391 1.107114 ACATCCGTACTCTGGAGCAG 58.893 55.000 0.00 0.00 39.30 4.24
3976 4394 4.762251 TGATCATACATCCGTACTCTGGAG 59.238 45.833 0.00 0.00 39.30 3.86
3978 4396 5.241728 TCTTGATCATACATCCGTACTCTGG 59.758 44.000 0.00 0.00 0.00 3.86
3992 4410 5.737349 GCTCTTGGTCGTGATCTTGATCATA 60.737 44.000 15.23 5.76 32.61 2.15
4364 4785 1.595993 GCACCGGTCTACTCTGCTCA 61.596 60.000 2.59 0.00 0.00 4.26
4421 4842 3.386237 AGCGAGCTGGAGTGGGTC 61.386 66.667 0.00 0.00 0.00 4.46
4422 4843 3.699894 CAGCGAGCTGGAGTGGGT 61.700 66.667 16.69 0.00 40.17 4.51
4469 4890 1.556911 TCCTCTTGCTTGGACTGATCC 59.443 52.381 0.00 0.00 46.48 3.36
4471 4892 2.777832 GTCCTCTTGCTTGGACTGAT 57.222 50.000 5.05 0.00 46.65 2.90
4475 4896 0.250513 ATCCGTCCTCTTGCTTGGAC 59.749 55.000 0.00 0.00 46.69 4.02
4476 4897 0.537188 GATCCGTCCTCTTGCTTGGA 59.463 55.000 0.00 0.00 0.00 3.53
4621 5043 3.682292 GATCCCACCCTGTGCGTCC 62.682 68.421 0.00 0.00 31.34 4.79
4623 5045 4.082523 CGATCCCACCCTGTGCGT 62.083 66.667 0.00 0.00 31.34 5.24
4626 5048 2.184322 CGTCGATCCCACCCTGTG 59.816 66.667 0.00 0.00 0.00 3.66
4645 5067 2.900273 CGGACCGGACCACATGAT 59.100 61.111 22.85 0.00 0.00 2.45
4659 5081 2.668212 CTTGTTTGCTCCGCCGGA 60.668 61.111 5.05 5.37 0.00 5.14
4664 5086 0.164647 CTTCTCGCTTGTTTGCTCCG 59.835 55.000 0.00 0.00 0.00 4.63
4924 5351 1.958715 CACCGGTCACACGATTGCA 60.959 57.895 2.59 0.00 35.47 4.08
4931 5372 1.265905 GGAACAAATCACCGGTCACAC 59.734 52.381 2.59 0.00 0.00 3.82
5073 5521 2.124695 GGCGGCCTGACCTAAAGG 60.125 66.667 12.87 0.00 42.17 3.11
5117 5684 2.528818 CCCCACCCACAGCTCTGAA 61.529 63.158 3.60 0.00 0.00 3.02
5118 5685 2.930019 CCCCACCCACAGCTCTGA 60.930 66.667 3.60 0.00 0.00 3.27
5119 5686 4.729918 GCCCCACCCACAGCTCTG 62.730 72.222 0.00 0.00 0.00 3.35
5120 5687 4.990910 AGCCCCACCCACAGCTCT 62.991 66.667 0.00 0.00 0.00 4.09
5121 5688 4.416738 GAGCCCCACCCACAGCTC 62.417 72.222 0.00 0.00 44.36 4.09
5124 5691 3.953775 AACGAGCCCCACCCACAG 61.954 66.667 0.00 0.00 0.00 3.66
5125 5692 4.263572 CAACGAGCCCCACCCACA 62.264 66.667 0.00 0.00 0.00 4.17
5126 5693 3.485346 TTCAACGAGCCCCACCCAC 62.485 63.158 0.00 0.00 0.00 4.61
5127 5694 3.172106 TTCAACGAGCCCCACCCA 61.172 61.111 0.00 0.00 0.00 4.51
5128 5695 2.671963 GTTCAACGAGCCCCACCC 60.672 66.667 0.00 0.00 0.00 4.61
5129 5696 0.893727 AATGTTCAACGAGCCCCACC 60.894 55.000 0.00 0.00 0.00 4.61
5130 5697 0.521735 GAATGTTCAACGAGCCCCAC 59.478 55.000 0.00 0.00 0.00 4.61
5131 5698 0.953471 CGAATGTTCAACGAGCCCCA 60.953 55.000 0.00 0.00 0.00 4.96
5132 5699 0.953960 ACGAATGTTCAACGAGCCCC 60.954 55.000 0.00 0.00 0.00 5.80
5133 5700 0.442699 GACGAATGTTCAACGAGCCC 59.557 55.000 0.00 0.00 0.00 5.19
5134 5701 1.126846 CAGACGAATGTTCAACGAGCC 59.873 52.381 0.00 0.00 0.00 4.70
5135 5702 1.462541 GCAGACGAATGTTCAACGAGC 60.463 52.381 0.00 0.00 0.00 5.03
5136 5703 1.126846 GGCAGACGAATGTTCAACGAG 59.873 52.381 0.00 0.00 0.00 4.18
5137 5704 1.144969 GGCAGACGAATGTTCAACGA 58.855 50.000 0.00 0.00 0.00 3.85
5138 5705 1.136252 CAGGCAGACGAATGTTCAACG 60.136 52.381 0.00 0.00 0.00 4.10
5139 5706 1.873591 ACAGGCAGACGAATGTTCAAC 59.126 47.619 0.00 0.00 0.00 3.18
5140 5707 2.143122 GACAGGCAGACGAATGTTCAA 58.857 47.619 0.00 0.00 0.00 2.69
5141 5708 1.344438 AGACAGGCAGACGAATGTTCA 59.656 47.619 0.00 0.00 0.00 3.18
5142 5709 2.086054 AGACAGGCAGACGAATGTTC 57.914 50.000 0.00 0.00 0.00 3.18
5143 5710 2.299013 TGTAGACAGGCAGACGAATGTT 59.701 45.455 0.00 0.00 0.00 2.71
5144 5711 1.893137 TGTAGACAGGCAGACGAATGT 59.107 47.619 0.00 0.00 0.00 2.71
5145 5712 2.534298 CTGTAGACAGGCAGACGAATG 58.466 52.381 1.47 0.00 40.20 2.67
5146 5713 1.134965 GCTGTAGACAGGCAGACGAAT 60.135 52.381 11.51 0.00 43.94 3.34
5147 5714 0.243907 GCTGTAGACAGGCAGACGAA 59.756 55.000 11.51 0.00 43.94 3.85
5148 5715 0.609406 AGCTGTAGACAGGCAGACGA 60.609 55.000 11.51 0.00 43.94 4.20
5149 5716 0.244994 AAGCTGTAGACAGGCAGACG 59.755 55.000 11.51 0.00 43.94 4.18
5150 5717 1.273606 TGAAGCTGTAGACAGGCAGAC 59.726 52.381 11.51 0.00 43.94 3.51
5151 5718 1.632589 TGAAGCTGTAGACAGGCAGA 58.367 50.000 11.51 0.00 43.94 4.26
5152 5719 2.093816 TCATGAAGCTGTAGACAGGCAG 60.094 50.000 11.51 0.00 43.94 4.85
5153 5720 1.901833 TCATGAAGCTGTAGACAGGCA 59.098 47.619 11.51 0.00 43.94 4.75
5154 5721 2.680312 TCATGAAGCTGTAGACAGGC 57.320 50.000 11.51 4.26 43.94 4.85
5155 5722 4.763073 TCATTCATGAAGCTGTAGACAGG 58.237 43.478 14.54 0.00 37.90 4.00
5156 5723 5.417811 ACTCATTCATGAAGCTGTAGACAG 58.582 41.667 14.54 5.26 40.52 3.51
5157 5724 5.411831 ACTCATTCATGAAGCTGTAGACA 57.588 39.130 14.54 0.00 36.18 3.41
5158 5725 7.465245 GCTTTACTCATTCATGAAGCTGTAGAC 60.465 40.741 14.54 6.19 35.27 2.59
5159 5726 6.536582 GCTTTACTCATTCATGAAGCTGTAGA 59.463 38.462 14.54 9.91 35.27 2.59
5160 5727 6.314648 TGCTTTACTCATTCATGAAGCTGTAG 59.685 38.462 14.54 9.68 37.65 2.74
5161 5728 6.092670 GTGCTTTACTCATTCATGAAGCTGTA 59.907 38.462 14.54 12.37 37.65 2.74
5162 5729 5.005740 TGCTTTACTCATTCATGAAGCTGT 58.994 37.500 14.54 13.27 37.65 4.40
5163 5730 5.123502 AGTGCTTTACTCATTCATGAAGCTG 59.876 40.000 14.54 8.43 37.65 4.24
5164 5731 5.251764 AGTGCTTTACTCATTCATGAAGCT 58.748 37.500 14.54 0.00 37.65 3.74
5165 5732 5.557891 AGTGCTTTACTCATTCATGAAGC 57.442 39.130 14.54 9.36 37.42 3.86
5177 5744 0.882474 AGAGCGTCGAGTGCTTTACT 59.118 50.000 12.88 3.96 44.18 2.24
5178 5745 1.649662 GAAGAGCGTCGAGTGCTTTAC 59.350 52.381 12.88 1.82 44.18 2.01
5179 5746 1.540267 AGAAGAGCGTCGAGTGCTTTA 59.460 47.619 12.88 0.00 44.18 1.85
5180 5747 0.315568 AGAAGAGCGTCGAGTGCTTT 59.684 50.000 12.88 5.29 44.18 3.51
5181 5748 0.315568 AAGAAGAGCGTCGAGTGCTT 59.684 50.000 12.88 1.92 44.18 3.91
5183 5750 0.664767 ACAAGAAGAGCGTCGAGTGC 60.665 55.000 0.00 1.37 0.00 4.40
5184 5751 2.510874 CTACAAGAAGAGCGTCGAGTG 58.489 52.381 0.00 0.00 0.00 3.51
5185 5752 1.469308 CCTACAAGAAGAGCGTCGAGT 59.531 52.381 0.00 0.00 0.00 4.18
5186 5753 1.795889 GCCTACAAGAAGAGCGTCGAG 60.796 57.143 0.00 0.00 0.00 4.04
5187 5754 0.170561 GCCTACAAGAAGAGCGTCGA 59.829 55.000 0.00 0.00 0.00 4.20
5188 5755 0.109272 TGCCTACAAGAAGAGCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
5189 5756 1.634702 CTGCCTACAAGAAGAGCGTC 58.365 55.000 0.00 0.00 0.00 5.19
5190 5757 0.390472 GCTGCCTACAAGAAGAGCGT 60.390 55.000 0.00 0.00 0.00 5.07
5191 5758 0.108424 AGCTGCCTACAAGAAGAGCG 60.108 55.000 0.00 0.00 0.00 5.03
5192 5759 1.736681 CAAGCTGCCTACAAGAAGAGC 59.263 52.381 0.00 0.00 0.00 4.09
5193 5760 1.736681 GCAAGCTGCCTACAAGAAGAG 59.263 52.381 0.00 0.00 37.42 2.85
5194 5761 1.072173 TGCAAGCTGCCTACAAGAAGA 59.928 47.619 0.00 0.00 44.23 2.87
5195 5762 1.467734 CTGCAAGCTGCCTACAAGAAG 59.532 52.381 0.00 0.00 44.23 2.85
5196 5763 1.527034 CTGCAAGCTGCCTACAAGAA 58.473 50.000 0.00 0.00 44.23 2.52
5197 5764 0.321919 CCTGCAAGCTGCCTACAAGA 60.322 55.000 0.00 0.00 44.23 3.02
5198 5765 1.310933 CCCTGCAAGCTGCCTACAAG 61.311 60.000 0.00 0.00 44.23 3.16
5199 5766 1.303561 CCCTGCAAGCTGCCTACAA 60.304 57.895 0.00 0.00 44.23 2.41
5200 5767 2.352422 CCCTGCAAGCTGCCTACA 59.648 61.111 0.00 0.00 44.23 2.74
5201 5768 2.439156 CCCCTGCAAGCTGCCTAC 60.439 66.667 0.00 0.00 44.23 3.18
5202 5769 1.788518 TTTCCCCTGCAAGCTGCCTA 61.789 55.000 0.00 0.00 44.23 3.93
5203 5770 2.661574 TTTTCCCCTGCAAGCTGCCT 62.662 55.000 0.00 0.00 44.23 4.75
5204 5771 2.163601 CTTTTCCCCTGCAAGCTGCC 62.164 60.000 0.00 0.00 44.23 4.85
5205 5772 1.291272 CTTTTCCCCTGCAAGCTGC 59.709 57.895 0.00 0.00 45.29 5.25
5206 5773 0.829182 ACCTTTTCCCCTGCAAGCTG 60.829 55.000 0.00 0.00 0.00 4.24
5207 5774 0.829182 CACCTTTTCCCCTGCAAGCT 60.829 55.000 0.00 0.00 0.00 3.74
5208 5775 1.667722 CACCTTTTCCCCTGCAAGC 59.332 57.895 0.00 0.00 0.00 4.01
5209 5776 1.820010 GCCACCTTTTCCCCTGCAAG 61.820 60.000 0.00 0.00 0.00 4.01
5210 5777 1.836604 GCCACCTTTTCCCCTGCAA 60.837 57.895 0.00 0.00 0.00 4.08
5211 5778 2.203625 GCCACCTTTTCCCCTGCA 60.204 61.111 0.00 0.00 0.00 4.41
5212 5779 2.203625 TGCCACCTTTTCCCCTGC 60.204 61.111 0.00 0.00 0.00 4.85
5213 5780 1.153756 ACTGCCACCTTTTCCCCTG 59.846 57.895 0.00 0.00 0.00 4.45
5214 5781 1.153756 CACTGCCACCTTTTCCCCT 59.846 57.895 0.00 0.00 0.00 4.79
5215 5782 2.574018 GCACTGCCACCTTTTCCCC 61.574 63.158 0.00 0.00 0.00 4.81
5216 5783 3.051210 GCACTGCCACCTTTTCCC 58.949 61.111 0.00 0.00 0.00 3.97
5227 5794 1.742761 TGCTCTAAATCTGGCACTGC 58.257 50.000 0.00 0.00 0.00 4.40
5228 5795 3.341823 AGTTGCTCTAAATCTGGCACTG 58.658 45.455 0.00 0.00 34.30 3.66
5229 5796 3.604582 GAGTTGCTCTAAATCTGGCACT 58.395 45.455 0.00 0.00 34.30 4.40
5230 5797 2.680339 GGAGTTGCTCTAAATCTGGCAC 59.320 50.000 0.00 0.00 33.99 5.01
5231 5798 2.305635 TGGAGTTGCTCTAAATCTGGCA 59.694 45.455 0.00 0.00 33.99 4.92
5232 5799 2.991250 TGGAGTTGCTCTAAATCTGGC 58.009 47.619 0.00 0.00 33.99 4.85
5233 5800 3.372206 CGTTGGAGTTGCTCTAAATCTGG 59.628 47.826 0.00 0.00 33.06 3.86
5234 5801 3.181516 GCGTTGGAGTTGCTCTAAATCTG 60.182 47.826 0.00 0.00 33.06 2.90
5235 5802 3.003480 GCGTTGGAGTTGCTCTAAATCT 58.997 45.455 0.00 0.00 33.06 2.40
5236 5803 2.096013 GGCGTTGGAGTTGCTCTAAATC 59.904 50.000 0.00 0.00 33.06 2.17
5237 5804 2.084546 GGCGTTGGAGTTGCTCTAAAT 58.915 47.619 0.00 0.00 33.06 1.40
5238 5805 1.202710 TGGCGTTGGAGTTGCTCTAAA 60.203 47.619 0.00 0.00 33.06 1.85
5239 5806 0.394938 TGGCGTTGGAGTTGCTCTAA 59.605 50.000 0.00 0.00 0.00 2.10
5240 5807 0.394938 TTGGCGTTGGAGTTGCTCTA 59.605 50.000 0.00 0.00 0.00 2.43
5241 5808 0.465460 TTTGGCGTTGGAGTTGCTCT 60.465 50.000 0.00 0.00 0.00 4.09
5242 5809 0.317854 GTTTGGCGTTGGAGTTGCTC 60.318 55.000 0.00 0.00 0.00 4.26
5243 5810 1.034838 TGTTTGGCGTTGGAGTTGCT 61.035 50.000 0.00 0.00 0.00 3.91
5244 5811 0.594796 CTGTTTGGCGTTGGAGTTGC 60.595 55.000 0.00 0.00 0.00 4.17
5245 5812 1.021202 TCTGTTTGGCGTTGGAGTTG 58.979 50.000 0.00 0.00 0.00 3.16
5246 5813 1.021968 GTCTGTTTGGCGTTGGAGTT 58.978 50.000 0.00 0.00 0.00 3.01
5247 5814 1.157870 CGTCTGTTTGGCGTTGGAGT 61.158 55.000 0.00 0.00 39.21 3.85
5248 5815 0.878523 TCGTCTGTTTGGCGTTGGAG 60.879 55.000 0.00 0.00 45.15 3.86
5249 5816 0.878523 CTCGTCTGTTTGGCGTTGGA 60.879 55.000 0.00 0.00 45.15 3.53
5250 5817 1.569493 CTCGTCTGTTTGGCGTTGG 59.431 57.895 0.00 0.00 45.15 3.77
5251 5818 1.082756 GCTCGTCTGTTTGGCGTTG 60.083 57.895 0.00 0.00 45.15 4.10
5252 5819 1.498865 CTGCTCGTCTGTTTGGCGTT 61.499 55.000 0.00 0.00 45.15 4.84
5253 5820 1.956170 CTGCTCGTCTGTTTGGCGT 60.956 57.895 0.00 0.00 45.15 5.68
5254 5821 1.498865 AACTGCTCGTCTGTTTGGCG 61.499 55.000 0.00 0.00 46.47 5.69
5255 5822 0.663153 AAACTGCTCGTCTGTTTGGC 59.337 50.000 11.90 0.00 42.68 4.52
5258 5825 1.940613 GGACAAACTGCTCGTCTGTTT 59.059 47.619 8.63 8.63 44.33 2.83
5259 5826 1.583054 GGACAAACTGCTCGTCTGTT 58.417 50.000 0.00 0.00 38.30 3.16
5260 5827 0.597637 CGGACAAACTGCTCGTCTGT 60.598 55.000 0.00 0.00 32.47 3.41
5261 5828 0.597637 ACGGACAAACTGCTCGTCTG 60.598 55.000 0.00 0.00 41.01 3.51
5262 5829 0.104304 AACGGACAAACTGCTCGTCT 59.896 50.000 0.00 0.00 31.12 4.18
5263 5830 0.935196 AAACGGACAAACTGCTCGTC 59.065 50.000 0.00 0.00 31.12 4.20
5264 5831 0.655733 CAAACGGACAAACTGCTCGT 59.344 50.000 0.00 0.00 32.39 4.18
5265 5832 0.041312 CCAAACGGACAAACTGCTCG 60.041 55.000 0.00 0.00 0.00 5.03
5266 5833 1.021968 ACCAAACGGACAAACTGCTC 58.978 50.000 0.00 0.00 0.00 4.26
5267 5834 1.470051 AACCAAACGGACAAACTGCT 58.530 45.000 0.00 0.00 0.00 4.24
5268 5835 2.159296 AGAAACCAAACGGACAAACTGC 60.159 45.455 0.00 0.00 0.00 4.40
5269 5836 3.488553 GGAGAAACCAAACGGACAAACTG 60.489 47.826 0.00 0.00 38.79 3.16
5270 5837 2.686405 GGAGAAACCAAACGGACAAACT 59.314 45.455 0.00 0.00 38.79 2.66
5271 5838 2.424246 TGGAGAAACCAAACGGACAAAC 59.576 45.455 0.00 0.00 46.75 2.93
5272 5839 2.724454 TGGAGAAACCAAACGGACAAA 58.276 42.857 0.00 0.00 46.75 2.83
5273 5840 2.421751 TGGAGAAACCAAACGGACAA 57.578 45.000 0.00 0.00 46.75 3.18
5283 5850 3.007398 AGTCAGACACAGATGGAGAAACC 59.993 47.826 2.66 0.00 39.54 3.27
5284 5851 3.993081 CAGTCAGACACAGATGGAGAAAC 59.007 47.826 2.66 0.00 0.00 2.78
5285 5852 3.897505 TCAGTCAGACACAGATGGAGAAA 59.102 43.478 2.66 0.00 0.00 2.52
5286 5853 3.500343 TCAGTCAGACACAGATGGAGAA 58.500 45.455 2.66 0.00 0.00 2.87
5287 5854 3.160679 TCAGTCAGACACAGATGGAGA 57.839 47.619 2.66 0.00 0.00 3.71
5288 5855 3.783191 CATCAGTCAGACACAGATGGAG 58.217 50.000 16.89 0.24 42.59 3.86
5289 5856 2.093816 GCATCAGTCAGACACAGATGGA 60.094 50.000 22.10 4.25 45.11 3.41
5290 5857 2.277969 GCATCAGTCAGACACAGATGG 58.722 52.381 22.10 11.12 45.11 3.51
5291 5858 1.925185 CGCATCAGTCAGACACAGATG 59.075 52.381 18.95 18.95 46.81 2.90
5292 5859 1.738365 GCGCATCAGTCAGACACAGAT 60.738 52.381 0.30 0.49 31.50 2.90
5293 5860 0.389037 GCGCATCAGTCAGACACAGA 60.389 55.000 0.30 0.00 0.00 3.41
5294 5861 1.357258 GGCGCATCAGTCAGACACAG 61.357 60.000 10.83 0.00 0.00 3.66
5295 5862 1.374631 GGCGCATCAGTCAGACACA 60.375 57.895 10.83 0.00 0.00 3.72
5296 5863 2.103042 GGGCGCATCAGTCAGACAC 61.103 63.158 10.83 0.00 0.00 3.67
5297 5864 2.110757 TTGGGCGCATCAGTCAGACA 62.111 55.000 10.83 0.00 0.00 3.41
5298 5865 1.375908 TTGGGCGCATCAGTCAGAC 60.376 57.895 10.83 0.00 0.00 3.51
5299 5866 1.375908 GTTGGGCGCATCAGTCAGA 60.376 57.895 10.83 0.00 0.00 3.27
5300 5867 1.642037 CTGTTGGGCGCATCAGTCAG 61.642 60.000 25.78 14.36 0.00 3.51
5301 5868 1.672030 CTGTTGGGCGCATCAGTCA 60.672 57.895 25.78 9.26 0.00 3.41
5302 5869 2.401766 CCTGTTGGGCGCATCAGTC 61.402 63.158 29.32 10.69 0.00 3.51
5303 5870 2.360350 CCTGTTGGGCGCATCAGT 60.360 61.111 29.32 0.00 0.00 3.41
5312 5879 0.678950 AAAAACATCGGCCTGTTGGG 59.321 50.000 10.87 0.00 39.25 4.12
5330 5897 3.124806 TGCTTTGTACACGTGACGAAAAA 59.875 39.130 25.01 12.84 0.00 1.94
5331 5898 2.671888 TGCTTTGTACACGTGACGAAAA 59.328 40.909 25.01 14.87 0.00 2.29
5332 5899 2.269172 TGCTTTGTACACGTGACGAAA 58.731 42.857 25.01 15.09 0.00 3.46
5333 5900 1.923899 TGCTTTGTACACGTGACGAA 58.076 45.000 25.01 18.85 0.00 3.85
5334 5901 1.855978 CTTGCTTTGTACACGTGACGA 59.144 47.619 25.01 12.82 0.00 4.20
5335 5902 1.591158 ACTTGCTTTGTACACGTGACG 59.409 47.619 25.01 2.24 0.00 4.35
5336 5903 3.350912 CAACTTGCTTTGTACACGTGAC 58.649 45.455 25.01 16.06 0.00 3.67
5337 5904 2.223157 GCAACTTGCTTTGTACACGTGA 60.223 45.455 25.01 2.68 40.96 4.35
5338 5905 2.108700 GCAACTTGCTTTGTACACGTG 58.891 47.619 15.48 15.48 40.96 4.49
5339 5906 1.064952 GGCAACTTGCTTTGTACACGT 59.935 47.619 13.43 0.00 44.28 4.49
5340 5907 1.599419 GGGCAACTTGCTTTGTACACG 60.599 52.381 13.43 0.00 44.28 4.49
5341 5908 1.681264 AGGGCAACTTGCTTTGTACAC 59.319 47.619 13.43 0.00 44.28 2.90
5342 5909 2.065899 AGGGCAACTTGCTTTGTACA 57.934 45.000 13.43 0.00 44.28 2.90
5343 5910 3.452755 AAAGGGCAACTTGCTTTGTAC 57.547 42.857 13.43 0.00 44.28 2.90
5344 5911 5.599999 TTTAAAGGGCAACTTGCTTTGTA 57.400 34.783 13.43 0.00 44.28 2.41
5345 5912 4.479786 TTTAAAGGGCAACTTGCTTTGT 57.520 36.364 13.43 0.65 44.28 2.83
5346 5913 5.809719 TTTTTAAAGGGCAACTTGCTTTG 57.190 34.783 13.43 0.00 44.28 2.77
5370 5937 2.973082 GCTGGCCGCTGGATTTTT 59.027 55.556 11.61 0.00 35.14 1.94
5371 5938 3.443045 CGCTGGCCGCTGGATTTT 61.443 61.111 15.78 0.00 36.13 1.82
5372 5939 4.722700 ACGCTGGCCGCTGGATTT 62.723 61.111 15.78 0.00 41.76 2.17
5380 5947 2.954753 GAACTGTTGACGCTGGCCG 61.955 63.158 0.00 0.00 44.21 6.13
5381 5948 1.237285 ATGAACTGTTGACGCTGGCC 61.237 55.000 0.00 0.00 0.00 5.36
5382 5949 0.593128 AATGAACTGTTGACGCTGGC 59.407 50.000 0.00 0.00 0.00 4.85
5383 5950 1.197721 GGAATGAACTGTTGACGCTGG 59.802 52.381 0.00 0.00 0.00 4.85
5384 5951 1.136252 CGGAATGAACTGTTGACGCTG 60.136 52.381 0.00 0.00 0.00 5.18
5385 5952 1.148310 CGGAATGAACTGTTGACGCT 58.852 50.000 0.00 0.00 0.00 5.07
5386 5953 0.165944 CCGGAATGAACTGTTGACGC 59.834 55.000 0.00 0.00 0.00 5.19
5387 5954 0.165944 GCCGGAATGAACTGTTGACG 59.834 55.000 5.05 0.00 0.00 4.35
5388 5955 0.165944 CGCCGGAATGAACTGTTGAC 59.834 55.000 5.05 0.00 0.00 3.18
5389 5956 0.953471 CCGCCGGAATGAACTGTTGA 60.953 55.000 5.05 0.00 0.00 3.18
5390 5957 1.234615 ACCGCCGGAATGAACTGTTG 61.235 55.000 11.71 0.00 0.00 3.33
5391 5958 0.953960 GACCGCCGGAATGAACTGTT 60.954 55.000 11.71 0.00 0.00 3.16
5392 5959 1.375523 GACCGCCGGAATGAACTGT 60.376 57.895 11.71 0.00 0.00 3.55
5393 5960 0.744414 ATGACCGCCGGAATGAACTG 60.744 55.000 11.71 0.00 0.00 3.16
5394 5961 0.828022 TATGACCGCCGGAATGAACT 59.172 50.000 11.71 0.00 0.00 3.01
5395 5962 0.935196 GTATGACCGCCGGAATGAAC 59.065 55.000 11.71 0.00 0.00 3.18
5396 5963 0.537653 TGTATGACCGCCGGAATGAA 59.462 50.000 11.71 0.00 0.00 2.57
5397 5964 0.537653 TTGTATGACCGCCGGAATGA 59.462 50.000 11.71 0.00 0.00 2.57
5398 5965 0.937304 CTTGTATGACCGCCGGAATG 59.063 55.000 11.71 0.00 0.00 2.67
5399 5966 0.814010 GCTTGTATGACCGCCGGAAT 60.814 55.000 11.71 5.65 0.00 3.01
5400 5967 1.448893 GCTTGTATGACCGCCGGAA 60.449 57.895 11.71 0.00 0.00 4.30
5401 5968 2.185867 GCTTGTATGACCGCCGGA 59.814 61.111 11.71 0.00 0.00 5.14
5402 5969 2.125310 TGCTTGTATGACCGCCGG 60.125 61.111 0.00 0.00 0.00 6.13
5403 5970 2.813179 GCTGCTTGTATGACCGCCG 61.813 63.158 0.00 0.00 0.00 6.46
5404 5971 2.472909 GGCTGCTTGTATGACCGCC 61.473 63.158 0.00 0.00 0.00 6.13
5405 5972 2.813179 CGGCTGCTTGTATGACCGC 61.813 63.158 0.00 0.00 33.46 5.68
5406 5973 1.153647 TCGGCTGCTTGTATGACCG 60.154 57.895 0.00 0.00 41.92 4.79
5407 5974 0.391130 TGTCGGCTGCTTGTATGACC 60.391 55.000 0.00 0.00 0.00 4.02
5408 5975 1.656652 ATGTCGGCTGCTTGTATGAC 58.343 50.000 0.00 0.00 0.00 3.06
5409 5976 2.167487 TGTATGTCGGCTGCTTGTATGA 59.833 45.455 0.00 0.00 0.00 2.15
5410 5977 2.549926 TGTATGTCGGCTGCTTGTATG 58.450 47.619 0.00 0.00 0.00 2.39
5411 5978 2.979814 TGTATGTCGGCTGCTTGTAT 57.020 45.000 0.00 0.00 0.00 2.29
5412 5979 2.549926 CATGTATGTCGGCTGCTTGTA 58.450 47.619 0.00 0.00 0.00 2.41
5413 5980 1.372582 CATGTATGTCGGCTGCTTGT 58.627 50.000 0.00 0.00 0.00 3.16
5414 5981 0.028505 GCATGTATGTCGGCTGCTTG 59.971 55.000 0.00 0.00 0.00 4.01
5415 5982 1.097547 GGCATGTATGTCGGCTGCTT 61.098 55.000 0.00 0.00 33.43 3.91
5416 5983 1.524621 GGCATGTATGTCGGCTGCT 60.525 57.895 0.00 0.00 33.43 4.24
5417 5984 1.779025 CTGGCATGTATGTCGGCTGC 61.779 60.000 0.00 0.00 34.48 5.25
5418 5985 2.314256 CTGGCATGTATGTCGGCTG 58.686 57.895 0.00 0.00 34.48 4.85
5419 5986 4.863707 CTGGCATGTATGTCGGCT 57.136 55.556 0.00 0.00 34.48 5.52
5421 5988 0.882042 GAGGCTGGCATGTATGTCGG 60.882 60.000 3.38 0.97 41.60 4.79
5422 5989 0.105593 AGAGGCTGGCATGTATGTCG 59.894 55.000 3.38 0.00 34.48 4.35
5423 5990 3.475566 TTAGAGGCTGGCATGTATGTC 57.524 47.619 3.38 0.00 0.00 3.06
5424 5991 3.931907 TTTAGAGGCTGGCATGTATGT 57.068 42.857 3.38 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.