Multiple sequence alignment - TraesCS3B01G107000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G107000 chr3B 100.000 4729 0 0 1 4729 72485129 72480401 0.000000e+00 8733
1 TraesCS3B01G107000 chr3A 89.344 2074 172 23 398 2443 57892885 57890833 0.000000e+00 2560
2 TraesCS3B01G107000 chr3A 93.299 1343 60 11 2476 3792 57890842 57889504 0.000000e+00 1954
3 TraesCS3B01G107000 chr3A 90.786 369 20 3 1 356 57893257 57892890 9.200000e-132 481
4 TraesCS3B01G107000 chr3A 95.604 91 4 0 3826 3916 57889251 57889161 3.810000e-31 147
5 TraesCS3B01G107000 chr7A 79.820 2329 397 42 1346 3631 201539700 201541998 0.000000e+00 1629
6 TraesCS3B01G107000 chr7A 87.750 751 44 16 4003 4729 323488603 323487877 0.000000e+00 833
7 TraesCS3B01G107000 chr3D 92.070 908 49 8 1 895 46473427 46472530 0.000000e+00 1256
8 TraesCS3B01G107000 chr6B 93.412 759 25 10 3996 4729 639981959 639981201 0.000000e+00 1101
9 TraesCS3B01G107000 chr7B 79.984 1224 219 15 1346 2563 337636408 337637611 0.000000e+00 880
10 TraesCS3B01G107000 chr7B 90.881 318 28 1 4182 4498 207904355 207904038 4.370000e-115 425
11 TraesCS3B01G107000 chr4D 93.617 517 33 0 4213 4729 352540132 352540648 0.000000e+00 773
12 TraesCS3B01G107000 chr4D 91.458 480 39 2 4182 4660 504083380 504083858 0.000000e+00 658
13 TraesCS3B01G107000 chr4D 85.081 248 12 6 3994 4217 352526101 352526347 3.680000e-56 230
14 TraesCS3B01G107000 chr5D 93.691 317 20 0 4182 4498 304348812 304349128 4.280000e-130 475
15 TraesCS3B01G107000 chr1D 92.744 317 23 0 4182 4498 464276252 464275936 4.310000e-125 459
16 TraesCS3B01G107000 chr5B 92.114 317 24 1 4182 4498 643442188 643441873 3.360000e-121 446
17 TraesCS3B01G107000 chr7D 91.195 318 26 2 4182 4498 46831870 46832186 9.400000e-117 431
18 TraesCS3B01G107000 chr2A 81.604 212 33 6 4520 4728 38398314 38398522 2.260000e-38 171
19 TraesCS3B01G107000 chr1B 85.246 122 15 3 4006 4126 306235308 306235427 6.430000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G107000 chr3B 72480401 72485129 4728 True 8733.0 8733 100.00000 1 4729 1 chr3B.!!$R1 4728
1 TraesCS3B01G107000 chr3A 57889161 57893257 4096 True 1285.5 2560 92.25825 1 3916 4 chr3A.!!$R1 3915
2 TraesCS3B01G107000 chr7A 201539700 201541998 2298 False 1629.0 1629 79.82000 1346 3631 1 chr7A.!!$F1 2285
3 TraesCS3B01G107000 chr7A 323487877 323488603 726 True 833.0 833 87.75000 4003 4729 1 chr7A.!!$R1 726
4 TraesCS3B01G107000 chr3D 46472530 46473427 897 True 1256.0 1256 92.07000 1 895 1 chr3D.!!$R1 894
5 TraesCS3B01G107000 chr6B 639981201 639981959 758 True 1101.0 1101 93.41200 3996 4729 1 chr6B.!!$R1 733
6 TraesCS3B01G107000 chr7B 337636408 337637611 1203 False 880.0 880 79.98400 1346 2563 1 chr7B.!!$F1 1217
7 TraesCS3B01G107000 chr4D 352540132 352540648 516 False 773.0 773 93.61700 4213 4729 1 chr4D.!!$F2 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1026 0.252057 TCCCATTGACCGACTCCAGA 60.252 55.0 0.00 0.0 0.00 3.86 F
1537 1580 0.247460 AGTAGTGCATCAGCGAGCAA 59.753 50.0 0.00 0.0 46.23 3.91 F
1539 1582 0.247460 TAGTGCATCAGCGAGCAACT 59.753 50.0 0.00 0.0 46.23 3.16 F
2578 2651 0.323629 TCTAAAGTTGGGAGTGGCGG 59.676 55.0 0.00 0.0 0.00 6.13 F
3499 3593 0.660595 GCGTACGACGATGGAGATGG 60.661 60.0 21.65 0.0 46.05 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 2204 0.249868 TGGGAGAGCAGTCGTGTTTG 60.250 55.0 0.00 0.0 0.00 2.93 R
3499 3593 0.533032 GATAGCTATCTCCACCCGGC 59.467 60.0 23.85 0.0 0.00 6.13 R
3537 3631 1.373570 CGGGAGAAATCCTGCTGAAC 58.626 55.0 0.00 0.0 41.61 3.18 R
3564 3658 0.037232 GACAACTCTCGACCCCTTGG 60.037 60.0 0.00 0.0 37.80 3.61 R
4567 4907 1.263356 AGCACGGTTGTAGCTTCCTA 58.737 50.0 0.00 0.0 34.37 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 91 1.742761 CTAGACACCTGGTTGGCATG 58.257 55.000 0.00 0.00 40.22 4.06
143 145 5.899547 TGATCCAGATTTAGTAGAGGCTTCA 59.100 40.000 0.00 0.00 0.00 3.02
153 155 1.201429 AGAGGCTTCAACCCGGTCAT 61.201 55.000 0.00 0.00 0.00 3.06
160 162 1.600023 TCAACCCGGTCATGACAAAC 58.400 50.000 26.47 9.18 0.00 2.93
186 188 1.745264 CTCACAGCTAGCTAGGGCC 59.255 63.158 18.86 5.84 39.73 5.80
259 261 2.649034 CTGGTGTACGTGACCGCT 59.351 61.111 12.46 0.00 36.12 5.52
355 369 1.017701 TGATCTGCAGCAGCGTTGAG 61.018 55.000 18.43 0.00 46.23 3.02
361 375 0.585357 GCAGCAGCGTTGAGGATATG 59.415 55.000 2.38 0.00 0.00 1.78
366 380 3.758554 AGCAGCGTTGAGGATATGTTTTT 59.241 39.130 2.38 0.00 0.00 1.94
367 381 3.853671 GCAGCGTTGAGGATATGTTTTTG 59.146 43.478 2.38 0.00 0.00 2.44
368 382 4.615912 GCAGCGTTGAGGATATGTTTTTGT 60.616 41.667 2.38 0.00 0.00 2.83
370 384 6.607689 CAGCGTTGAGGATATGTTTTTGTAA 58.392 36.000 0.00 0.00 0.00 2.41
371 385 7.250569 CAGCGTTGAGGATATGTTTTTGTAAT 58.749 34.615 0.00 0.00 0.00 1.89
372 386 7.754924 CAGCGTTGAGGATATGTTTTTGTAATT 59.245 33.333 0.00 0.00 0.00 1.40
373 387 8.952278 AGCGTTGAGGATATGTTTTTGTAATTA 58.048 29.630 0.00 0.00 0.00 1.40
374 388 9.221775 GCGTTGAGGATATGTTTTTGTAATTAG 57.778 33.333 0.00 0.00 0.00 1.73
375 389 9.716507 CGTTGAGGATATGTTTTTGTAATTAGG 57.283 33.333 0.00 0.00 0.00 2.69
402 416 8.786826 TTTTATCAACACCTTGTATCGATCTT 57.213 30.769 0.00 0.00 0.00 2.40
424 438 7.725251 TCTTGACTGATTTGGCATTTAAAGTT 58.275 30.769 0.00 0.00 0.00 2.66
435 449 4.318974 GGCATTTAAAGTTGTGCTGCAAAG 60.319 41.667 2.77 0.00 39.03 2.77
452 466 6.534475 TGCAAAGCCATTCATCTAGAAAAT 57.466 33.333 0.00 0.00 40.22 1.82
456 470 7.381678 GCAAAGCCATTCATCTAGAAAATGATC 59.618 37.037 23.13 16.73 40.22 2.92
481 495 6.980978 CGCACTCTAGGAAATCTGAATTCTAA 59.019 38.462 7.05 0.00 0.00 2.10
564 595 3.599730 ATCGAAGCACTCTGATTGTCA 57.400 42.857 0.00 0.00 0.00 3.58
576 607 1.684450 TGATTGTCATCCATGGCATGC 59.316 47.619 22.02 9.90 42.67 4.06
595 626 1.064017 GCCATAAGGACATCCCCAACA 60.064 52.381 0.00 0.00 36.89 3.33
596 627 2.622977 GCCATAAGGACATCCCCAACAA 60.623 50.000 0.00 0.00 36.89 2.83
597 628 3.914771 CCATAAGGACATCCCCAACAAT 58.085 45.455 0.00 0.00 36.89 2.71
598 629 4.289245 CCATAAGGACATCCCCAACAATT 58.711 43.478 0.00 0.00 36.89 2.32
732 767 4.760047 ATGCGTGCTCGGGTGTCC 62.760 66.667 10.52 0.00 37.56 4.02
744 779 2.105821 TCGGGTGTCCAACTGAATTTCT 59.894 45.455 0.00 0.00 28.82 2.52
752 787 5.945784 TGTCCAACTGAATTTCTGATAAGGG 59.054 40.000 9.92 4.49 0.00 3.95
776 811 5.779529 ACATCTCAGCAAAATGTGACTTT 57.220 34.783 0.00 0.00 32.58 2.66
777 812 6.152932 ACATCTCAGCAAAATGTGACTTTT 57.847 33.333 0.00 0.00 32.58 2.27
778 813 7.275888 ACATCTCAGCAAAATGTGACTTTTA 57.724 32.000 0.00 0.00 32.58 1.52
779 814 7.889469 ACATCTCAGCAAAATGTGACTTTTAT 58.111 30.769 0.00 0.00 32.58 1.40
780 815 8.362639 ACATCTCAGCAAAATGTGACTTTTATT 58.637 29.630 0.00 0.00 32.58 1.40
818 855 7.508296 CCCATCTCATCTCCATTTTTATTCCTT 59.492 37.037 0.00 0.00 0.00 3.36
867 904 4.672587 TCTATGCCACATAACCTGAGTC 57.327 45.455 0.00 0.00 0.00 3.36
869 906 3.719268 ATGCCACATAACCTGAGTCAA 57.281 42.857 0.00 0.00 0.00 3.18
873 910 4.469586 TGCCACATAACCTGAGTCAAGATA 59.530 41.667 0.00 0.00 0.00 1.98
901 938 7.970614 GGACCATTCTTTGAATGTATTTGAGTC 59.029 37.037 16.08 13.50 0.00 3.36
902 939 8.408043 ACCATTCTTTGAATGTATTTGAGTCA 57.592 30.769 16.08 0.00 0.00 3.41
915 952 3.961480 TTGAGTCACCATGGTCTGTAG 57.039 47.619 16.53 3.19 0.00 2.74
929 966 1.306997 TGTAGGGGCAGGCTAGCTT 60.307 57.895 15.72 3.40 34.17 3.74
941 978 3.553511 CAGGCTAGCTTGATTACGACTTG 59.446 47.826 21.55 0.00 0.00 3.16
978 1015 2.044650 GCTGCCAGCTCCCATTGA 60.045 61.111 10.04 0.00 38.45 2.57
979 1016 2.413142 GCTGCCAGCTCCCATTGAC 61.413 63.158 10.04 0.00 38.45 3.18
989 1026 0.252057 TCCCATTGACCGACTCCAGA 60.252 55.000 0.00 0.00 0.00 3.86
1059 1097 5.317733 ACATACGATATCTCAAGCCTAGC 57.682 43.478 0.34 0.00 0.00 3.42
1062 1100 3.235200 ACGATATCTCAAGCCTAGCCTT 58.765 45.455 0.34 0.00 0.00 4.35
1063 1101 3.006323 ACGATATCTCAAGCCTAGCCTTG 59.994 47.826 7.13 7.13 42.73 3.61
1064 1102 2.918712 TATCTCAAGCCTAGCCTTGC 57.081 50.000 8.58 0.00 41.47 4.01
1065 1103 1.211456 ATCTCAAGCCTAGCCTTGCT 58.789 50.000 8.58 0.00 41.47 3.91
1067 1105 0.463474 CTCAAGCCTAGCCTTGCTCC 60.463 60.000 8.58 0.00 41.47 4.70
1068 1106 0.911525 TCAAGCCTAGCCTTGCTCCT 60.912 55.000 8.58 0.00 41.47 3.69
1069 1107 0.463474 CAAGCCTAGCCTTGCTCCTC 60.463 60.000 0.00 0.00 40.44 3.71
1073 1111 1.690633 CTAGCCTTGCTCCTCCCCA 60.691 63.158 0.00 0.00 40.44 4.96
1103 1141 7.228108 CCACATGTATGAACAGCAATATTCTCT 59.772 37.037 0.00 0.00 39.49 3.10
1104 1142 8.281194 CACATGTATGAACAGCAATATTCTCTC 58.719 37.037 0.00 0.00 39.49 3.20
1113 1151 7.876936 ACAGCAATATTCTCTCATGAACATT 57.123 32.000 0.00 0.00 0.00 2.71
1123 1161 3.567585 TCTCATGAACATTGCGTCCAAAA 59.432 39.130 0.00 0.00 34.05 2.44
1141 1179 2.291209 AACCATGTTCCAGATGTGCA 57.709 45.000 0.00 0.00 0.00 4.57
1165 1203 1.144936 GTGGCCTCCCTTCTCATCG 59.855 63.158 3.32 0.00 0.00 3.84
1205 1243 3.332919 CTGCTAGACAACAACATGCTCT 58.667 45.455 0.00 0.00 0.00 4.09
1283 1321 5.127682 GCATCAATCTGGAAATAACCTTGGT 59.872 40.000 0.00 0.00 0.00 3.67
1287 1325 4.301072 TCTGGAAATAACCTTGGTGGAG 57.699 45.455 0.00 0.00 39.71 3.86
1294 1332 1.729586 AACCTTGGTGGAGTGCTAGA 58.270 50.000 0.00 0.00 39.71 2.43
1308 1346 5.120830 GGAGTGCTAGATGTTTGTGTTACTG 59.879 44.000 0.00 0.00 0.00 2.74
1442 1485 2.352805 CCAGGGTTCAGTGCCTCC 59.647 66.667 0.00 0.00 0.00 4.30
1458 1501 3.882888 TGCCTCCGAAAATGATTACATCC 59.117 43.478 0.00 0.00 35.50 3.51
1479 1522 9.550406 ACATCCATAATAATGCAATTTTTCTGG 57.450 29.630 0.00 1.09 40.40 3.86
1493 1536 0.478072 TTCTGGTGTCCAATGGCACT 59.522 50.000 20.32 0.00 36.03 4.40
1505 1548 3.005050 CCAATGGCACTGTATATGGCTTG 59.995 47.826 0.00 2.94 42.86 4.01
1514 1557 3.023119 TGTATATGGCTTGGGCTTTGTG 58.977 45.455 0.00 0.00 38.73 3.33
1515 1558 2.236489 ATATGGCTTGGGCTTTGTGT 57.764 45.000 0.00 0.00 38.73 3.72
1526 1569 1.593196 GCTTTGTGTCCAGTAGTGCA 58.407 50.000 0.00 0.00 0.00 4.57
1531 1574 1.338105 TGTGTCCAGTAGTGCATCAGC 60.338 52.381 0.00 0.00 42.57 4.26
1535 1578 1.150567 CCAGTAGTGCATCAGCGAGC 61.151 60.000 0.00 0.00 46.23 5.03
1536 1579 0.459063 CAGTAGTGCATCAGCGAGCA 60.459 55.000 0.00 0.00 46.23 4.26
1537 1580 0.247460 AGTAGTGCATCAGCGAGCAA 59.753 50.000 0.00 0.00 46.23 3.91
1538 1581 0.371645 GTAGTGCATCAGCGAGCAAC 59.628 55.000 0.00 0.00 46.23 4.17
1539 1582 0.247460 TAGTGCATCAGCGAGCAACT 59.753 50.000 0.00 0.00 46.23 3.16
1540 1583 1.018226 AGTGCATCAGCGAGCAACTC 61.018 55.000 0.00 0.00 46.23 3.01
1569 1615 1.257743 TCTCTCAGTGGTGCACCTAC 58.742 55.000 34.75 28.14 34.49 3.18
1575 1621 1.918800 GTGGTGCACCTACCCTCCT 60.919 63.158 34.75 0.00 40.09 3.69
1595 1641 3.006323 CCTATACTGTCATCTGGACTGCC 59.994 52.174 0.00 0.00 46.17 4.85
1617 1663 5.734720 CCAATGCTAACTCTCCTGTTTCTA 58.265 41.667 0.00 0.00 0.00 2.10
1618 1664 5.814705 CCAATGCTAACTCTCCTGTTTCTAG 59.185 44.000 0.00 0.00 0.00 2.43
1621 1667 7.906199 ATGCTAACTCTCCTGTTTCTAGTAT 57.094 36.000 0.00 0.00 0.00 2.12
1679 1725 1.003233 GTGGTCTCAAGGCTCCACC 60.003 63.158 10.42 4.49 42.90 4.61
1680 1726 1.461268 TGGTCTCAAGGCTCCACCA 60.461 57.895 3.42 3.42 43.14 4.17
1797 1843 2.093288 TGGCAGAGTTTCAGCTATCCAG 60.093 50.000 0.00 0.00 0.00 3.86
1809 1855 1.394917 GCTATCCAGCGAACACACTTG 59.605 52.381 0.00 0.00 38.22 3.16
1850 1896 2.026915 TGATGGGATGACACTTGTGAGG 60.027 50.000 7.83 0.00 0.00 3.86
1886 1932 7.174253 ACACACAACATTAGTTATACACTTGGG 59.826 37.037 0.00 0.00 36.88 4.12
1985 2031 3.270027 GTTGATCGTGAACATGGATGGA 58.730 45.455 0.00 0.00 0.00 3.41
1991 2037 2.381911 GTGAACATGGATGGAGCCATT 58.618 47.619 3.11 0.00 46.29 3.16
2013 2059 7.308229 CCATTTACTCTTCAAACCTCAGTTCAG 60.308 40.741 0.00 0.00 34.19 3.02
2023 2069 1.143305 CTCAGTTCAGCTTCGTGGTG 58.857 55.000 0.00 4.52 44.85 4.17
2055 2101 8.187913 TGATAAATCAGGGTCTCTTCTATCAG 57.812 38.462 0.00 0.00 32.11 2.90
2097 2143 1.535028 GTGATGCCAATGACACGTTGA 59.465 47.619 5.43 0.00 0.00 3.18
2098 2144 2.162208 GTGATGCCAATGACACGTTGAT 59.838 45.455 5.43 0.00 0.00 2.57
2141 2187 5.155905 GGATCCCTTTCCTTCTACATCCTA 58.844 45.833 0.00 0.00 32.68 2.94
2143 2189 4.955335 TCCCTTTCCTTCTACATCCTACA 58.045 43.478 0.00 0.00 0.00 2.74
2145 2191 4.962995 CCCTTTCCTTCTACATCCTACAGA 59.037 45.833 0.00 0.00 0.00 3.41
2146 2192 5.163395 CCCTTTCCTTCTACATCCTACAGAC 60.163 48.000 0.00 0.00 0.00 3.51
2147 2193 5.659079 CCTTTCCTTCTACATCCTACAGACT 59.341 44.000 0.00 0.00 0.00 3.24
2149 2195 7.201839 CCTTTCCTTCTACATCCTACAGACTAC 60.202 44.444 0.00 0.00 0.00 2.73
2150 2196 5.692928 TCCTTCTACATCCTACAGACTACC 58.307 45.833 0.00 0.00 0.00 3.18
2151 2197 5.432390 TCCTTCTACATCCTACAGACTACCT 59.568 44.000 0.00 0.00 0.00 3.08
2152 2198 6.618610 TCCTTCTACATCCTACAGACTACCTA 59.381 42.308 0.00 0.00 0.00 3.08
2153 2199 7.295196 TCCTTCTACATCCTACAGACTACCTAT 59.705 40.741 0.00 0.00 0.00 2.57
2156 2202 7.451732 TCTACATCCTACAGACTACCTATGAC 58.548 42.308 0.00 0.00 0.00 3.06
2157 2203 6.014771 ACATCCTACAGACTACCTATGACA 57.985 41.667 0.00 0.00 0.00 3.58
2158 2204 5.828859 ACATCCTACAGACTACCTATGACAC 59.171 44.000 0.00 0.00 0.00 3.67
2159 2205 5.446260 TCCTACAGACTACCTATGACACA 57.554 43.478 0.00 0.00 0.00 3.72
2161 2207 6.250711 TCCTACAGACTACCTATGACACAAA 58.749 40.000 0.00 0.00 0.00 2.83
2162 2208 6.152323 TCCTACAGACTACCTATGACACAAAC 59.848 42.308 0.00 0.00 0.00 2.93
2163 2209 5.801531 ACAGACTACCTATGACACAAACA 57.198 39.130 0.00 0.00 0.00 2.83
2164 2210 5.539048 ACAGACTACCTATGACACAAACAC 58.461 41.667 0.00 0.00 0.00 3.32
2165 2211 4.621460 CAGACTACCTATGACACAAACACG 59.379 45.833 0.00 0.00 0.00 4.49
2166 2212 4.521639 AGACTACCTATGACACAAACACGA 59.478 41.667 0.00 0.00 0.00 4.35
2167 2213 4.553323 ACTACCTATGACACAAACACGAC 58.447 43.478 0.00 0.00 0.00 4.34
2168 2214 3.746045 ACCTATGACACAAACACGACT 57.254 42.857 0.00 0.00 0.00 4.18
2169 2215 3.390135 ACCTATGACACAAACACGACTG 58.610 45.455 0.00 0.00 0.00 3.51
2170 2216 2.157668 CCTATGACACAAACACGACTGC 59.842 50.000 0.00 0.00 0.00 4.40
2214 2266 1.712018 CTCATGTGACATGCCAGCCG 61.712 60.000 20.23 0.00 0.00 5.52
2221 2273 3.506096 CATGCCAGCCGAGTGCAG 61.506 66.667 0.00 0.00 44.83 4.41
2346 2398 3.195396 AGAGGACTTTCAGCTAGCTCAAG 59.805 47.826 23.36 23.36 0.00 3.02
2348 2400 3.056179 AGGACTTTCAGCTAGCTCAAGTC 60.056 47.826 34.55 34.55 39.90 3.01
2433 2485 1.674980 TGCAAGGACGCATGCATGA 60.675 52.632 30.64 2.59 46.87 3.07
2435 2487 1.063649 CAAGGACGCATGCATGAGC 59.936 57.895 30.64 20.72 42.57 4.26
2465 2517 2.991190 GTGCATTGCCATGTTCTTTGAG 59.009 45.455 6.12 0.00 32.28 3.02
2470 2522 3.096489 TGCCATGTTCTTTGAGCAAAC 57.904 42.857 0.00 0.00 0.00 2.93
2471 2523 2.694628 TGCCATGTTCTTTGAGCAAACT 59.305 40.909 0.00 0.00 0.00 2.66
2472 2524 3.132646 TGCCATGTTCTTTGAGCAAACTT 59.867 39.130 0.00 0.00 0.00 2.66
2513 2565 2.006772 CCAGATCGGTAGTTTGCGC 58.993 57.895 0.00 0.00 0.00 6.09
2514 2566 1.631072 CAGATCGGTAGTTTGCGCG 59.369 57.895 0.00 0.00 0.00 6.86
2521 2573 1.425412 GGTAGTTTGCGCGAGAAAGA 58.575 50.000 12.10 0.00 0.00 2.52
2523 2575 3.184541 GGTAGTTTGCGCGAGAAAGATA 58.815 45.455 12.10 1.30 0.00 1.98
2529 2581 1.202417 TGCGCGAGAAAGATAGAAGGG 60.202 52.381 12.10 0.00 0.00 3.95
2578 2651 0.323629 TCTAAAGTTGGGAGTGGCGG 59.676 55.000 0.00 0.00 0.00 6.13
2620 2699 3.181469 ACTGTTGTCATTGTGGTCGTACT 60.181 43.478 0.00 0.00 0.00 2.73
2626 2705 2.103432 TCATTGTGGTCGTACTGTTGGT 59.897 45.455 0.00 0.00 0.00 3.67
2671 2750 2.984562 TGGCTTCAGCATTTATCGTCA 58.015 42.857 0.30 0.00 44.36 4.35
2676 2755 4.260375 GCTTCAGCATTTATCGTCATCGTT 60.260 41.667 0.00 0.00 41.59 3.85
2720 2814 4.884668 AGAACAAGACGATGGGTTTCTA 57.115 40.909 0.00 0.00 0.00 2.10
2869 2963 3.691609 AGTAGCATTGCTGTAAAGAAGCC 59.308 43.478 21.31 0.00 40.10 4.35
2897 2991 1.916181 CTAGGCCAAGGGGAGAAAGAA 59.084 52.381 5.01 0.00 35.59 2.52
2915 3009 3.030291 AGAATTCCGCTCTGAGATGACT 58.970 45.455 9.28 0.00 0.00 3.41
3040 3134 7.332182 GTCTCTAAACAGGTGGATTTTCAGTAG 59.668 40.741 0.00 0.00 0.00 2.57
3043 3137 8.092687 TCTAAACAGGTGGATTTTCAGTAGTAC 58.907 37.037 0.00 0.00 0.00 2.73
3052 3146 5.817816 GGATTTTCAGTAGTACAGTGGATGG 59.182 44.000 2.52 0.00 0.00 3.51
3152 3246 5.670485 TGCGAGTCCAAGATTATACATTGT 58.330 37.500 0.00 0.00 0.00 2.71
3277 3371 3.695606 GCTCAGAGGCACACGGGA 61.696 66.667 0.00 0.00 0.00 5.14
3470 3564 3.164358 CGATCTTCGCAATATCGTCGAT 58.836 45.455 13.16 13.16 38.12 3.59
3493 3587 0.734942 AAGTTGGCGTACGACGATGG 60.735 55.000 21.65 0.00 46.05 3.51
3499 3593 0.660595 GCGTACGACGATGGAGATGG 60.661 60.000 21.65 0.00 46.05 3.51
3537 3631 3.357079 GGGTTGCTCTGTGGTGCG 61.357 66.667 0.00 0.00 35.02 5.34
3576 3670 2.245438 GAGGCTTCCAAGGGGTCGAG 62.245 65.000 0.00 0.00 34.93 4.04
3592 3686 1.895798 TCGAGAGTTGTCCAGATGCTT 59.104 47.619 0.00 0.00 0.00 3.91
3613 3707 2.358615 GGCGTCTGTGATGTGCCA 60.359 61.111 0.00 0.00 45.06 4.92
3619 3713 2.669229 TGTGATGTGCCACAGCCG 60.669 61.111 11.03 0.00 41.63 5.52
3734 3828 6.153170 CAGATGATATGCTGGAGTAGATGACT 59.847 42.308 0.00 0.00 42.90 3.41
3741 3835 2.234661 CTGGAGTAGATGACTGGTTGCA 59.765 50.000 0.00 0.00 39.06 4.08
3768 3865 2.879462 CGCAAGTCCGTCGGCTAC 60.879 66.667 6.34 0.00 0.00 3.58
3770 3867 2.183555 CAAGTCCGTCGGCTACCC 59.816 66.667 6.34 0.00 0.00 3.69
3792 3889 3.505680 CCTTGTTTTGGCAGCATACTGTA 59.494 43.478 0.00 0.00 46.30 2.74
3793 3890 4.158394 CCTTGTTTTGGCAGCATACTGTAT 59.842 41.667 0.00 0.00 46.30 2.29
3794 3891 4.963276 TGTTTTGGCAGCATACTGTATC 57.037 40.909 0.00 0.00 46.30 2.24
3795 3892 4.588899 TGTTTTGGCAGCATACTGTATCT 58.411 39.130 0.00 0.00 46.30 1.98
3796 3893 4.635765 TGTTTTGGCAGCATACTGTATCTC 59.364 41.667 0.00 0.00 46.30 2.75
3797 3894 2.800881 TGGCAGCATACTGTATCTCG 57.199 50.000 0.00 0.00 46.30 4.04
3798 3895 1.341209 TGGCAGCATACTGTATCTCGG 59.659 52.381 0.00 0.00 46.30 4.63
3800 3897 2.557056 GGCAGCATACTGTATCTCGGTA 59.443 50.000 0.00 0.00 46.30 4.02
3801 3898 3.005472 GGCAGCATACTGTATCTCGGTAA 59.995 47.826 0.00 0.00 46.30 2.85
3802 3899 4.500887 GGCAGCATACTGTATCTCGGTAAA 60.501 45.833 0.00 0.00 46.30 2.01
3803 3900 4.681942 GCAGCATACTGTATCTCGGTAAAG 59.318 45.833 0.00 0.00 46.30 1.85
3804 3901 5.736492 GCAGCATACTGTATCTCGGTAAAGT 60.736 44.000 0.00 0.00 46.30 2.66
3807 3904 5.736492 GCATACTGTATCTCGGTAAAGTGCT 60.736 44.000 0.00 0.00 40.70 4.40
3808 3905 4.111375 ACTGTATCTCGGTAAAGTGCTG 57.889 45.455 0.00 0.00 33.34 4.41
3809 3906 3.510360 ACTGTATCTCGGTAAAGTGCTGT 59.490 43.478 0.00 0.00 33.34 4.40
3810 3907 4.703575 ACTGTATCTCGGTAAAGTGCTGTA 59.296 41.667 0.00 0.00 33.34 2.74
3812 3909 6.127423 ACTGTATCTCGGTAAAGTGCTGTATT 60.127 38.462 0.00 0.00 33.34 1.89
3813 3910 6.636705 TGTATCTCGGTAAAGTGCTGTATTT 58.363 36.000 0.00 0.00 0.00 1.40
3814 3911 6.755141 TGTATCTCGGTAAAGTGCTGTATTTC 59.245 38.462 0.00 0.00 0.00 2.17
3815 3912 4.501071 TCTCGGTAAAGTGCTGTATTTCC 58.499 43.478 0.00 0.00 0.00 3.13
3816 3913 3.255725 TCGGTAAAGTGCTGTATTTCCG 58.744 45.455 0.00 0.00 33.89 4.30
3817 3914 2.350498 CGGTAAAGTGCTGTATTTCCGG 59.650 50.000 0.00 0.00 31.43 5.14
3819 3916 3.373130 GGTAAAGTGCTGTATTTCCGGTC 59.627 47.826 0.00 0.00 0.00 4.79
3820 3917 3.418684 AAAGTGCTGTATTTCCGGTCT 57.581 42.857 0.00 0.00 0.00 3.85
3821 3918 2.386661 AGTGCTGTATTTCCGGTCTG 57.613 50.000 0.00 0.00 0.00 3.51
3822 3919 1.623811 AGTGCTGTATTTCCGGTCTGT 59.376 47.619 0.00 0.00 0.00 3.41
3823 3920 2.829720 AGTGCTGTATTTCCGGTCTGTA 59.170 45.455 0.00 0.00 0.00 2.74
3824 3921 3.119101 AGTGCTGTATTTCCGGTCTGTAG 60.119 47.826 0.00 0.00 0.00 2.74
3852 4168 0.036577 TTCTGGAGCTGCTCTTCTGC 60.037 55.000 27.09 12.10 39.61 4.26
3889 4205 4.754114 TGCTAATGTTGGTTTGATTTTGCC 59.246 37.500 0.00 0.00 0.00 4.52
3904 4220 2.871096 TTGCCGGTCTTTTAGTGGAT 57.129 45.000 1.90 0.00 0.00 3.41
3908 4224 2.548480 GCCGGTCTTTTAGTGGATATGC 59.452 50.000 1.90 0.00 0.00 3.14
3916 4232 2.024176 TAGTGGATATGCACGGGGAT 57.976 50.000 20.04 0.00 0.00 3.85
3917 4233 2.024176 AGTGGATATGCACGGGGATA 57.976 50.000 20.04 0.00 0.00 2.59
3918 4234 1.902508 AGTGGATATGCACGGGGATAG 59.097 52.381 20.04 0.00 30.37 2.08
3919 4235 1.623811 GTGGATATGCACGGGGATAGT 59.376 52.381 11.86 0.00 30.37 2.12
3920 4236 2.829720 GTGGATATGCACGGGGATAGTA 59.170 50.000 11.86 0.00 30.37 1.82
3921 4237 3.096852 TGGATATGCACGGGGATAGTAG 58.903 50.000 4.82 0.00 30.37 2.57
3922 4238 2.431057 GGATATGCACGGGGATAGTAGG 59.569 54.545 4.82 0.00 30.37 3.18
3923 4239 2.688902 TATGCACGGGGATAGTAGGT 57.311 50.000 0.00 0.00 0.00 3.08
3924 4240 1.802553 ATGCACGGGGATAGTAGGTT 58.197 50.000 0.00 0.00 0.00 3.50
3925 4241 1.575419 TGCACGGGGATAGTAGGTTT 58.425 50.000 0.00 0.00 0.00 3.27
3926 4242 1.910671 TGCACGGGGATAGTAGGTTTT 59.089 47.619 0.00 0.00 0.00 2.43
3927 4243 2.093341 TGCACGGGGATAGTAGGTTTTC 60.093 50.000 0.00 0.00 0.00 2.29
3928 4244 2.817901 CACGGGGATAGTAGGTTTTCG 58.182 52.381 0.00 0.00 0.00 3.46
3929 4245 1.137675 ACGGGGATAGTAGGTTTTCGC 59.862 52.381 0.00 0.00 0.00 4.70
3930 4246 1.539712 CGGGGATAGTAGGTTTTCGCC 60.540 57.143 0.00 0.00 37.72 5.54
3931 4247 1.202734 GGGGATAGTAGGTTTTCGCCC 60.203 57.143 0.00 0.00 35.72 6.13
3932 4248 1.202734 GGGATAGTAGGTTTTCGCCCC 60.203 57.143 0.00 0.00 0.00 5.80
3933 4249 1.539712 GGATAGTAGGTTTTCGCCCCG 60.540 57.143 0.00 0.00 0.00 5.73
3934 4250 1.137675 GATAGTAGGTTTTCGCCCCGT 59.862 52.381 0.00 0.00 0.00 5.28
3935 4251 1.846007 TAGTAGGTTTTCGCCCCGTA 58.154 50.000 0.00 0.00 0.00 4.02
3936 4252 0.533951 AGTAGGTTTTCGCCCCGTAG 59.466 55.000 0.00 0.00 0.00 3.51
3951 4267 0.370273 CGTAGGATGCGTTTGACAGC 59.630 55.000 0.00 0.00 40.12 4.40
3952 4268 0.370273 GTAGGATGCGTTTGACAGCG 59.630 55.000 0.00 0.00 35.87 5.18
3953 4269 0.245266 TAGGATGCGTTTGACAGCGA 59.755 50.000 5.81 0.00 35.87 4.93
3954 4270 0.602638 AGGATGCGTTTGACAGCGAA 60.603 50.000 5.81 0.00 35.87 4.70
3955 4271 0.447801 GGATGCGTTTGACAGCGAAT 59.552 50.000 5.81 0.90 35.87 3.34
3956 4272 1.527696 GATGCGTTTGACAGCGAATG 58.472 50.000 5.81 0.00 35.87 2.67
3957 4273 0.454957 ATGCGTTTGACAGCGAATGC 60.455 50.000 5.81 0.00 46.29 3.56
3958 4274 1.082169 GCGTTTGACAGCGAATGCA 60.082 52.632 0.00 0.00 45.69 3.96
3959 4275 0.454957 GCGTTTGACAGCGAATGCAT 60.455 50.000 0.00 0.00 45.69 3.96
3960 4276 1.527696 CGTTTGACAGCGAATGCATC 58.472 50.000 0.00 0.00 46.23 3.91
3973 4289 2.100846 TGCATCGCAGCAGATTTCC 58.899 52.632 0.00 0.00 40.11 3.13
3974 4290 0.393402 TGCATCGCAGCAGATTTCCT 60.393 50.000 0.00 0.00 40.11 3.36
3975 4291 1.134431 TGCATCGCAGCAGATTTCCTA 60.134 47.619 0.00 0.00 40.11 2.94
3976 4292 1.262683 GCATCGCAGCAGATTTCCTAC 59.737 52.381 0.00 0.00 0.00 3.18
3977 4293 2.831333 CATCGCAGCAGATTTCCTACT 58.169 47.619 0.00 0.00 0.00 2.57
3978 4294 3.800261 GCATCGCAGCAGATTTCCTACTA 60.800 47.826 0.00 0.00 0.00 1.82
3979 4295 3.717400 TCGCAGCAGATTTCCTACTAG 57.283 47.619 0.00 0.00 0.00 2.57
3980 4296 3.024547 TCGCAGCAGATTTCCTACTAGT 58.975 45.455 0.00 0.00 0.00 2.57
3981 4297 3.119291 CGCAGCAGATTTCCTACTAGTG 58.881 50.000 5.39 0.00 0.00 2.74
3982 4298 2.869192 GCAGCAGATTTCCTACTAGTGC 59.131 50.000 5.39 0.00 0.00 4.40
3983 4299 3.462021 CAGCAGATTTCCTACTAGTGCC 58.538 50.000 5.39 0.00 0.00 5.01
3984 4300 3.107601 AGCAGATTTCCTACTAGTGCCA 58.892 45.455 5.39 0.00 0.00 4.92
3985 4301 3.713764 AGCAGATTTCCTACTAGTGCCAT 59.286 43.478 5.39 0.00 0.00 4.40
3986 4302 4.901849 AGCAGATTTCCTACTAGTGCCATA 59.098 41.667 5.39 0.00 0.00 2.74
3987 4303 5.366768 AGCAGATTTCCTACTAGTGCCATAA 59.633 40.000 5.39 0.00 0.00 1.90
3988 4304 5.467063 GCAGATTTCCTACTAGTGCCATAAC 59.533 44.000 5.39 0.00 0.00 1.89
3989 4305 6.686632 GCAGATTTCCTACTAGTGCCATAACT 60.687 42.308 5.39 0.00 0.00 2.24
3990 4306 6.926272 CAGATTTCCTACTAGTGCCATAACTC 59.074 42.308 5.39 0.00 0.00 3.01
3991 4307 4.913335 TTCCTACTAGTGCCATAACTCG 57.087 45.455 5.39 0.00 0.00 4.18
3992 4308 3.894759 TCCTACTAGTGCCATAACTCGT 58.105 45.455 5.39 0.00 31.65 4.18
3993 4309 4.275810 TCCTACTAGTGCCATAACTCGTT 58.724 43.478 5.39 0.00 29.73 3.85
3994 4310 4.708421 TCCTACTAGTGCCATAACTCGTTT 59.292 41.667 5.39 0.00 29.73 3.60
3995 4311 5.186409 TCCTACTAGTGCCATAACTCGTTTT 59.814 40.000 5.39 0.00 29.73 2.43
3996 4312 5.873164 CCTACTAGTGCCATAACTCGTTTTT 59.127 40.000 5.39 0.00 29.73 1.94
3997 4313 5.857822 ACTAGTGCCATAACTCGTTTTTC 57.142 39.130 0.00 0.00 0.00 2.29
3998 4314 5.548406 ACTAGTGCCATAACTCGTTTTTCT 58.452 37.500 0.00 0.00 0.00 2.52
3999 4315 5.638234 ACTAGTGCCATAACTCGTTTTTCTC 59.362 40.000 0.00 0.00 0.00 2.87
4000 4316 4.642429 AGTGCCATAACTCGTTTTTCTCT 58.358 39.130 0.00 0.00 0.00 3.10
4001 4317 5.063880 AGTGCCATAACTCGTTTTTCTCTT 58.936 37.500 0.00 0.00 0.00 2.85
4015 4331 6.324042 GTTTTTCTCTTGGGAAACGTTTACA 58.676 36.000 24.13 17.80 35.31 2.41
4100 4416 0.739462 CGCACGTCTTTATCCCAGCA 60.739 55.000 0.00 0.00 0.00 4.41
4102 4418 1.676014 GCACGTCTTTATCCCAGCACT 60.676 52.381 0.00 0.00 0.00 4.40
4166 4501 1.134551 GCATCGCTTCTTTCCTCTCCT 60.135 52.381 0.00 0.00 0.00 3.69
4188 4527 3.312718 GCCATGGCCAGCAACCAA 61.313 61.111 27.24 0.00 41.49 3.67
4247 4586 0.542702 CCAGCAACCACCCCAAGATT 60.543 55.000 0.00 0.00 0.00 2.40
4248 4587 1.341080 CAGCAACCACCCCAAGATTT 58.659 50.000 0.00 0.00 0.00 2.17
4455 4795 1.845809 GCGAGCTGGAACCACAACTG 61.846 60.000 0.00 0.00 0.00 3.16
4456 4796 0.249868 CGAGCTGGAACCACAACTGA 60.250 55.000 0.00 0.00 0.00 3.41
4517 4857 3.734231 CGTCGATATTTGCTACAATCGGT 59.266 43.478 10.08 0.00 41.11 4.69
4567 4907 4.091549 ACAAATGGATGCAGTTGGAGATT 58.908 39.130 27.20 6.95 34.84 2.40
4606 4946 2.604046 TCGGAAAAGCTATGAGAGGC 57.396 50.000 0.00 0.00 0.00 4.70
4630 4970 1.698506 AAAATGTTTCAGCGGGGTGA 58.301 45.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.353704 CGTATGGACAGCTGGTGAAAGA 60.354 50.000 19.93 0.00 0.00 2.52
89 91 4.410400 CGTTGCTGGAGGACCCCC 62.410 72.222 0.00 0.00 34.81 5.40
143 145 0.183971 TGGTTTGTCATGACCGGGTT 59.816 50.000 22.85 0.00 38.81 4.11
153 155 3.743521 CTGTGAGGAAGATGGTTTGTCA 58.256 45.455 0.00 0.00 0.00 3.58
160 162 1.761784 AGCTAGCTGTGAGGAAGATGG 59.238 52.381 18.57 0.00 0.00 3.51
186 188 3.003394 TGAACATTCACTAGCCCATGG 57.997 47.619 4.14 4.14 31.01 3.66
371 385 9.104965 CGATACAAGGTGTTGATAAAATCCTAA 57.895 33.333 0.00 0.00 37.10 2.69
372 386 8.479689 TCGATACAAGGTGTTGATAAAATCCTA 58.520 33.333 0.00 0.00 37.10 2.94
373 387 7.335627 TCGATACAAGGTGTTGATAAAATCCT 58.664 34.615 0.00 0.00 37.10 3.24
374 388 7.548196 TCGATACAAGGTGTTGATAAAATCC 57.452 36.000 0.00 0.00 37.10 3.01
375 389 9.046296 AGATCGATACAAGGTGTTGATAAAATC 57.954 33.333 0.00 0.00 37.10 2.17
376 390 8.964476 AGATCGATACAAGGTGTTGATAAAAT 57.036 30.769 0.00 0.00 37.10 1.82
381 395 5.812642 GTCAAGATCGATACAAGGTGTTGAT 59.187 40.000 0.00 0.00 37.10 2.57
385 399 4.462834 TCAGTCAAGATCGATACAAGGTGT 59.537 41.667 0.00 0.00 0.00 4.16
402 416 6.700960 CACAACTTTAAATGCCAAATCAGTCA 59.299 34.615 0.00 0.00 0.00 3.41
435 449 5.049198 TGCGATCATTTTCTAGATGAATGGC 60.049 40.000 20.54 17.52 37.11 4.40
452 466 3.954258 TCAGATTTCCTAGAGTGCGATCA 59.046 43.478 0.00 0.00 0.00 2.92
456 470 5.355596 AGAATTCAGATTTCCTAGAGTGCG 58.644 41.667 8.44 0.00 0.00 5.34
481 495 5.636903 AATTATGAGTGCCCAGTCACTAT 57.363 39.130 7.89 2.82 46.40 2.12
536 560 3.447229 TCAGAGTGCTTCGATACAATGGA 59.553 43.478 0.00 0.00 0.00 3.41
576 607 3.380471 TTGTTGGGGATGTCCTTATGG 57.620 47.619 0.00 0.00 35.95 2.74
604 635 4.054825 CCCACGGTTGGCACATGC 62.055 66.667 0.00 0.00 42.35 4.06
625 660 5.015515 TCCTTGTGCATTTTCATATGACCA 58.984 37.500 4.48 0.00 0.00 4.02
725 760 3.486383 TCAGAAATTCAGTTGGACACCC 58.514 45.455 0.00 0.00 0.00 4.61
732 767 5.183713 TGTGCCCTTATCAGAAATTCAGTTG 59.816 40.000 0.00 0.00 0.00 3.16
744 779 1.839354 TGCTGAGATGTGCCCTTATCA 59.161 47.619 0.00 0.00 0.00 2.15
752 787 3.057736 AGTCACATTTTGCTGAGATGTGC 60.058 43.478 14.95 11.61 46.29 4.57
780 815 7.677745 TGGAGATGAGATGGGGAAAAATAAAAA 59.322 33.333 0.00 0.00 0.00 1.94
818 855 3.020984 GTGGACCCACTGTGAAAGAAAA 58.979 45.455 9.86 0.00 43.12 2.29
820 857 1.562008 TGTGGACCCACTGTGAAAGAA 59.438 47.619 18.81 0.00 46.30 2.52
867 904 6.604795 ACATTCAAAGAATGGTCCCTATCTTG 59.395 38.462 20.15 0.00 32.72 3.02
869 906 6.332976 ACATTCAAAGAATGGTCCCTATCT 57.667 37.500 20.15 0.00 32.14 1.98
873 910 6.953520 TCAAATACATTCAAAGAATGGTCCCT 59.046 34.615 20.15 5.25 32.14 4.20
901 938 1.224592 GCCCCTACAGACCATGGTG 59.775 63.158 25.52 11.92 0.00 4.17
902 939 1.229820 TGCCCCTACAGACCATGGT 60.230 57.895 19.89 19.89 0.00 3.55
915 952 0.474184 TAATCAAGCTAGCCTGCCCC 59.526 55.000 12.13 0.00 0.00 5.80
929 966 6.711194 TGGAAATTTGTACCAAGTCGTAATCA 59.289 34.615 0.00 0.00 0.00 2.57
941 978 5.177511 GCAGCTCTTTTTGGAAATTTGTACC 59.822 40.000 0.00 0.00 0.00 3.34
978 1015 1.276421 CATCTGGTTTCTGGAGTCGGT 59.724 52.381 0.00 0.00 0.00 4.69
979 1016 2.009042 GCATCTGGTTTCTGGAGTCGG 61.009 57.143 0.00 0.00 0.00 4.79
989 1026 0.038166 ACCGGTCATGCATCTGGTTT 59.962 50.000 12.13 0.00 39.97 3.27
1032 1070 5.952347 AGGCTTGAGATATCGTATGTATGGA 59.048 40.000 0.00 0.00 0.00 3.41
1059 1097 1.225704 GTGATGGGGAGGAGCAAGG 59.774 63.158 0.00 0.00 0.00 3.61
1062 1100 2.124768 TGGTGATGGGGAGGAGCA 59.875 61.111 0.00 0.00 0.00 4.26
1063 1101 1.639635 ATGTGGTGATGGGGAGGAGC 61.640 60.000 0.00 0.00 0.00 4.70
1064 1102 0.182061 CATGTGGTGATGGGGAGGAG 59.818 60.000 0.00 0.00 0.00 3.69
1065 1103 0.549902 ACATGTGGTGATGGGGAGGA 60.550 55.000 0.00 0.00 0.00 3.71
1067 1105 2.439135 TCATACATGTGGTGATGGGGAG 59.561 50.000 9.11 0.00 0.00 4.30
1068 1106 2.486716 TCATACATGTGGTGATGGGGA 58.513 47.619 9.11 0.00 0.00 4.81
1069 1107 2.951642 GTTCATACATGTGGTGATGGGG 59.048 50.000 9.11 0.00 0.00 4.96
1073 1111 3.954200 TGCTGTTCATACATGTGGTGAT 58.046 40.909 9.11 0.00 32.86 3.06
1103 1141 3.551863 GGTTTTGGACGCAATGTTCATGA 60.552 43.478 0.00 0.00 35.49 3.07
1104 1142 2.730928 GGTTTTGGACGCAATGTTCATG 59.269 45.455 0.00 0.00 35.49 3.07
1113 1151 0.671251 GGAACATGGTTTTGGACGCA 59.329 50.000 0.00 0.00 0.00 5.24
1123 1161 2.291089 TGATGCACATCTGGAACATGGT 60.291 45.455 11.66 0.00 38.20 3.55
1141 1179 0.625683 AGAAGGGAGGCCACCATGAT 60.626 55.000 21.72 3.30 0.00 2.45
1165 1203 2.825836 CGCAACATCCCCTGAGGC 60.826 66.667 0.00 0.00 34.51 4.70
1219 1257 6.115448 ACTTAGCACTGGAAAGTTCATAGT 57.885 37.500 0.00 0.00 29.25 2.12
1283 1321 3.769739 ACACAAACATCTAGCACTCCA 57.230 42.857 0.00 0.00 0.00 3.86
1287 1325 4.213270 TGCAGTAACACAAACATCTAGCAC 59.787 41.667 0.00 0.00 0.00 4.40
1294 1332 2.892852 AGGCATGCAGTAACACAAACAT 59.107 40.909 21.36 0.00 0.00 2.71
1458 1501 8.819974 GGACACCAGAAAAATTGCATTATTATG 58.180 33.333 0.00 0.00 34.76 1.90
1468 1511 3.747529 GCCATTGGACACCAGAAAAATTG 59.252 43.478 6.95 0.00 33.81 2.32
1479 1522 3.565482 CCATATACAGTGCCATTGGACAC 59.435 47.826 17.37 17.37 37.05 3.67
1493 1536 3.023119 CACAAAGCCCAAGCCATATACA 58.977 45.455 0.00 0.00 41.25 2.29
1505 1548 1.523758 CACTACTGGACACAAAGCCC 58.476 55.000 0.00 0.00 0.00 5.19
1514 1557 0.173481 TCGCTGATGCACTACTGGAC 59.827 55.000 0.00 0.00 39.64 4.02
1515 1558 0.457443 CTCGCTGATGCACTACTGGA 59.543 55.000 0.00 0.00 39.64 3.86
1526 1569 0.975040 AGGAGGAGTTGCTCGCTGAT 60.975 55.000 0.00 0.00 0.00 2.90
1531 1574 2.955660 AGAAGATAGGAGGAGTTGCTCG 59.044 50.000 0.00 0.00 0.00 5.03
1535 1578 5.067674 CACTGAGAGAAGATAGGAGGAGTTG 59.932 48.000 0.00 0.00 0.00 3.16
1536 1579 5.200483 CACTGAGAGAAGATAGGAGGAGTT 58.800 45.833 0.00 0.00 0.00 3.01
1537 1580 4.386312 CCACTGAGAGAAGATAGGAGGAGT 60.386 50.000 0.00 0.00 0.00 3.85
1538 1581 4.144297 CCACTGAGAGAAGATAGGAGGAG 58.856 52.174 0.00 0.00 0.00 3.69
1539 1582 3.529734 ACCACTGAGAGAAGATAGGAGGA 59.470 47.826 0.00 0.00 0.00 3.71
1540 1583 3.636300 CACCACTGAGAGAAGATAGGAGG 59.364 52.174 0.00 0.00 0.00 4.30
1569 1615 3.829601 GTCCAGATGACAGTATAGGAGGG 59.170 52.174 0.00 0.00 43.85 4.30
1595 1641 6.402222 ACTAGAAACAGGAGAGTTAGCATTG 58.598 40.000 0.00 0.00 0.00 2.82
1617 1663 5.046878 TGTCGAACACAAAGGTATCCATACT 60.047 40.000 0.00 0.00 30.70 2.12
1618 1664 5.172934 TGTCGAACACAAAGGTATCCATAC 58.827 41.667 0.00 0.00 29.30 2.39
1621 1667 3.755112 TGTCGAACACAAAGGTATCCA 57.245 42.857 0.00 0.00 29.30 3.41
1662 1708 0.842030 ATGGTGGAGCCTTGAGACCA 60.842 55.000 0.00 0.00 40.89 4.02
1679 1725 2.485124 GGAGAGATTGGCAGTCCAGATG 60.485 54.545 6.36 0.00 44.53 2.90
1680 1726 1.767681 GGAGAGATTGGCAGTCCAGAT 59.232 52.381 6.36 0.00 44.53 2.90
1809 1855 0.952984 GTGAAGCTCTGGCCAGACAC 60.953 60.000 32.00 29.85 39.73 3.67
1850 1896 1.356624 GTTGTGTGTGCTGGACTGC 59.643 57.895 0.00 0.00 0.00 4.40
1886 1932 2.224475 CCTCATGTCCCCTGATGTGATC 60.224 54.545 0.00 0.00 0.00 2.92
1949 1995 2.113860 TCAACCTTGTATCCTGCAGC 57.886 50.000 8.66 0.00 0.00 5.25
1985 2031 4.985538 TGAGGTTTGAAGAGTAAATGGCT 58.014 39.130 0.00 0.00 0.00 4.75
1991 2037 5.057149 GCTGAACTGAGGTTTGAAGAGTAA 58.943 41.667 0.00 0.00 35.58 2.24
2013 2059 2.010145 TCATAGAAGCACCACGAAGC 57.990 50.000 0.00 0.00 0.00 3.86
2023 2069 7.003402 AGAGACCCTGATTTATCATAGAAGC 57.997 40.000 0.00 0.00 36.02 3.86
2055 2101 1.513586 GCTGCGCAATGACAAGCTC 60.514 57.895 13.05 0.00 0.00 4.09
2097 2143 2.185350 CTCGCCGAGGACAGCAAT 59.815 61.111 6.13 0.00 0.00 3.56
2141 2187 5.539048 GTGTTTGTGTCATAGGTAGTCTGT 58.461 41.667 0.00 0.00 0.00 3.41
2143 2189 4.521639 TCGTGTTTGTGTCATAGGTAGTCT 59.478 41.667 0.00 0.00 0.00 3.24
2145 2191 4.280174 AGTCGTGTTTGTGTCATAGGTAGT 59.720 41.667 0.00 0.00 0.00 2.73
2146 2192 4.621460 CAGTCGTGTTTGTGTCATAGGTAG 59.379 45.833 0.00 0.00 0.00 3.18
2147 2193 4.552355 CAGTCGTGTTTGTGTCATAGGTA 58.448 43.478 0.00 0.00 0.00 3.08
2149 2195 2.157668 GCAGTCGTGTTTGTGTCATAGG 59.842 50.000 0.00 0.00 0.00 2.57
2150 2196 3.059884 AGCAGTCGTGTTTGTGTCATAG 58.940 45.455 0.00 0.00 0.00 2.23
2151 2197 3.057019 GAGCAGTCGTGTTTGTGTCATA 58.943 45.455 0.00 0.00 0.00 2.15
2152 2198 1.867233 GAGCAGTCGTGTTTGTGTCAT 59.133 47.619 0.00 0.00 0.00 3.06
2153 2199 1.134818 AGAGCAGTCGTGTTTGTGTCA 60.135 47.619 0.00 0.00 0.00 3.58
2156 2202 0.861837 GGAGAGCAGTCGTGTTTGTG 59.138 55.000 0.00 0.00 0.00 3.33
2157 2203 0.249911 GGGAGAGCAGTCGTGTTTGT 60.250 55.000 0.00 0.00 0.00 2.83
2158 2204 0.249868 TGGGAGAGCAGTCGTGTTTG 60.250 55.000 0.00 0.00 0.00 2.93
2159 2205 0.468226 TTGGGAGAGCAGTCGTGTTT 59.532 50.000 0.00 0.00 0.00 2.83
2161 2207 1.367840 GTTGGGAGAGCAGTCGTGT 59.632 57.895 0.00 0.00 0.00 4.49
2162 2208 1.374758 GGTTGGGAGAGCAGTCGTG 60.375 63.158 0.00 0.00 0.00 4.35
2163 2209 2.584391 GGGTTGGGAGAGCAGTCGT 61.584 63.158 0.00 0.00 0.00 4.34
2164 2210 2.266055 GGGTTGGGAGAGCAGTCG 59.734 66.667 0.00 0.00 0.00 4.18
2165 2211 1.779061 TTGGGGTTGGGAGAGCAGTC 61.779 60.000 0.00 0.00 0.00 3.51
2166 2212 1.142688 ATTGGGGTTGGGAGAGCAGT 61.143 55.000 0.00 0.00 0.00 4.40
2167 2213 0.394899 GATTGGGGTTGGGAGAGCAG 60.395 60.000 0.00 0.00 0.00 4.24
2168 2214 1.691219 GATTGGGGTTGGGAGAGCA 59.309 57.895 0.00 0.00 0.00 4.26
2169 2215 1.076705 GGATTGGGGTTGGGAGAGC 60.077 63.158 0.00 0.00 0.00 4.09
2170 2216 1.615262 GGGATTGGGGTTGGGAGAG 59.385 63.158 0.00 0.00 0.00 3.20
2214 2266 1.227674 CGGAATAGGGGCTGCACTC 60.228 63.158 0.21 0.00 0.00 3.51
2221 2273 1.111277 AATGCAAACGGAATAGGGGC 58.889 50.000 0.00 0.00 0.00 5.80
2346 2398 5.979288 ATATACCCAACTCCACTATCGAC 57.021 43.478 0.00 0.00 0.00 4.20
2348 2400 5.479306 CCAATATACCCAACTCCACTATCG 58.521 45.833 0.00 0.00 0.00 2.92
2444 2496 2.991190 CTCAAAGAACATGGCAATGCAC 59.009 45.455 7.79 0.00 37.29 4.57
2450 2502 2.694628 AGTTTGCTCAAAGAACATGGCA 59.305 40.909 0.00 0.00 0.00 4.92
2454 2506 4.500375 GCCTGAAGTTTGCTCAAAGAACAT 60.500 41.667 0.00 0.00 0.00 2.71
2465 2517 2.159327 AGCAATTGCCTGAAGTTTGC 57.841 45.000 26.45 0.00 43.38 3.68
2470 2522 3.672767 AAAGGAAGCAATTGCCTGAAG 57.327 42.857 26.45 0.00 43.38 3.02
2471 2523 3.387374 TGAAAAGGAAGCAATTGCCTGAA 59.613 39.130 26.45 0.73 43.38 3.02
2472 2524 2.964464 TGAAAAGGAAGCAATTGCCTGA 59.036 40.909 26.45 0.54 43.38 3.86
2512 2564 3.133183 AGGTTCCCTTCTATCTTTCTCGC 59.867 47.826 0.00 0.00 0.00 5.03
2513 2565 4.688021 CAGGTTCCCTTCTATCTTTCTCG 58.312 47.826 0.00 0.00 0.00 4.04
2514 2566 4.163268 AGCAGGTTCCCTTCTATCTTTCTC 59.837 45.833 0.00 0.00 0.00 2.87
2521 2573 3.185455 ACAGAAGCAGGTTCCCTTCTAT 58.815 45.455 8.80 0.00 44.30 1.98
2523 2575 1.439543 ACAGAAGCAGGTTCCCTTCT 58.560 50.000 8.80 5.10 46.36 2.85
2529 2581 5.877012 TGATGAAAGATACAGAAGCAGGTTC 59.123 40.000 4.00 4.00 35.08 3.62
2578 2651 2.748058 AATGACGGTGTGCCTCCCAC 62.748 60.000 0.00 0.00 44.90 4.61
2620 2699 1.353022 GGACCCCTATGACAACCAACA 59.647 52.381 0.00 0.00 0.00 3.33
2626 2705 5.014755 ACATAAACAAGGACCCCTATGACAA 59.985 40.000 0.00 0.00 31.13 3.18
2676 2755 1.774217 AGGGTGAAGGTTGCCTCCA 60.774 57.895 0.00 0.00 30.89 3.86
2897 2991 3.291584 TGTAGTCATCTCAGAGCGGAAT 58.708 45.455 0.00 0.00 0.00 3.01
2915 3009 2.881734 TGGTGGATGTTGCCAATTGTA 58.118 42.857 4.43 0.00 40.20 2.41
2936 3030 4.401519 CCTCGGAGTTTAACTAGATGGACA 59.598 45.833 4.02 0.00 0.00 4.02
3152 3246 1.344438 ACGTTCTCAGGCTTGATGTCA 59.656 47.619 0.00 0.00 31.68 3.58
3225 3319 1.380524 CTTTGCTCCCTGCTCATCAG 58.619 55.000 0.00 0.00 43.37 2.90
3277 3371 1.447838 CACTCGGGCGCAACATAGT 60.448 57.895 10.83 5.16 0.00 2.12
3302 3396 5.048643 GCTCTTATCTGAGATGGCGTAGTTA 60.049 44.000 4.96 0.00 36.23 2.24
3356 3450 2.630098 CCTCCTTCCGCTGATTATCTCA 59.370 50.000 0.00 0.00 0.00 3.27
3493 3587 0.832135 TATCTCCACCCGGCCATCTC 60.832 60.000 2.24 0.00 0.00 2.75
3499 3593 0.533032 GATAGCTATCTCCACCCGGC 59.467 60.000 23.85 0.00 0.00 6.13
3537 3631 1.373570 CGGGAGAAATCCTGCTGAAC 58.626 55.000 0.00 0.00 41.61 3.18
3543 3637 1.147153 GCCTCCGGGAGAAATCCTG 59.853 63.158 25.60 7.69 35.93 3.86
3562 3656 0.685097 CAACTCTCGACCCCTTGGAA 59.315 55.000 0.00 0.00 34.81 3.53
3564 3658 0.037232 GACAACTCTCGACCCCTTGG 60.037 60.000 0.00 0.00 37.80 3.61
3566 3660 0.471211 TGGACAACTCTCGACCCCTT 60.471 55.000 0.00 0.00 0.00 3.95
3568 3662 0.898789 TCTGGACAACTCTCGACCCC 60.899 60.000 0.00 0.00 0.00 4.95
3569 3663 1.134965 CATCTGGACAACTCTCGACCC 60.135 57.143 0.00 0.00 0.00 4.46
3570 3664 1.737363 GCATCTGGACAACTCTCGACC 60.737 57.143 0.00 0.00 0.00 4.79
3576 3670 2.746362 CCTTCAAGCATCTGGACAACTC 59.254 50.000 0.00 0.00 0.00 3.01
3592 3686 0.950555 GCACATCACAGACGCCTTCA 60.951 55.000 0.00 0.00 0.00 3.02
3750 3844 4.789075 TAGCCGACGGACTTGCGC 62.789 66.667 20.50 0.00 0.00 6.09
3751 3845 2.879462 GTAGCCGACGGACTTGCG 60.879 66.667 20.50 0.00 0.00 4.85
3754 3848 3.073101 GGGGTAGCCGACGGACTT 61.073 66.667 20.50 4.54 0.00 3.01
3755 3849 3.597086 AAGGGGTAGCCGACGGACT 62.597 63.158 20.50 16.50 0.00 3.85
3757 3851 3.072468 CAAGGGGTAGCCGACGGA 61.072 66.667 20.50 0.00 0.00 4.69
3758 3852 2.459202 AAACAAGGGGTAGCCGACGG 62.459 60.000 10.29 10.29 0.00 4.79
3768 3865 1.066929 GTATGCTGCCAAAACAAGGGG 60.067 52.381 0.00 0.00 0.00 4.79
3770 3867 2.297033 ACAGTATGCTGCCAAAACAAGG 59.703 45.455 11.09 0.00 46.30 3.61
3792 3889 5.116882 GGAAATACAGCACTTTACCGAGAT 58.883 41.667 0.00 0.00 0.00 2.75
3793 3890 4.501071 GGAAATACAGCACTTTACCGAGA 58.499 43.478 0.00 0.00 0.00 4.04
3794 3891 3.306166 CGGAAATACAGCACTTTACCGAG 59.694 47.826 0.00 0.00 40.16 4.63
3795 3892 3.255725 CGGAAATACAGCACTTTACCGA 58.744 45.455 0.00 0.00 40.16 4.69
3796 3893 2.350498 CCGGAAATACAGCACTTTACCG 59.650 50.000 0.00 0.00 37.98 4.02
3797 3894 3.340928 ACCGGAAATACAGCACTTTACC 58.659 45.455 9.46 0.00 0.00 2.85
3798 3895 4.092968 CAGACCGGAAATACAGCACTTTAC 59.907 45.833 9.46 0.00 0.00 2.01
3800 3897 3.074412 CAGACCGGAAATACAGCACTTT 58.926 45.455 9.46 0.00 0.00 2.66
3801 3898 2.038557 ACAGACCGGAAATACAGCACTT 59.961 45.455 9.46 0.00 0.00 3.16
3802 3899 1.623811 ACAGACCGGAAATACAGCACT 59.376 47.619 9.46 0.00 0.00 4.40
3803 3900 2.094762 ACAGACCGGAAATACAGCAC 57.905 50.000 9.46 0.00 0.00 4.40
3804 3901 2.418197 GCTACAGACCGGAAATACAGCA 60.418 50.000 9.46 0.00 0.00 4.41
3807 3904 3.130516 CAGAGCTACAGACCGGAAATACA 59.869 47.826 9.46 0.00 0.00 2.29
3808 3905 3.130693 ACAGAGCTACAGACCGGAAATAC 59.869 47.826 9.46 0.00 0.00 1.89
3809 3906 3.130516 CACAGAGCTACAGACCGGAAATA 59.869 47.826 9.46 0.00 0.00 1.40
3810 3907 2.093973 CACAGAGCTACAGACCGGAAAT 60.094 50.000 9.46 0.00 0.00 2.17
3812 3909 0.888619 CACAGAGCTACAGACCGGAA 59.111 55.000 9.46 0.00 0.00 4.30
3813 3910 0.251209 ACACAGAGCTACAGACCGGA 60.251 55.000 9.46 0.00 0.00 5.14
3814 3911 0.603569 AACACAGAGCTACAGACCGG 59.396 55.000 0.00 0.00 0.00 5.28
3815 3912 2.029828 AGAAACACAGAGCTACAGACCG 60.030 50.000 0.00 0.00 0.00 4.79
3816 3913 3.321497 CAGAAACACAGAGCTACAGACC 58.679 50.000 0.00 0.00 0.00 3.85
3817 3914 3.005897 TCCAGAAACACAGAGCTACAGAC 59.994 47.826 0.00 0.00 0.00 3.51
3819 3916 3.583806 CTCCAGAAACACAGAGCTACAG 58.416 50.000 0.00 0.00 0.00 2.74
3820 3917 2.289072 GCTCCAGAAACACAGAGCTACA 60.289 50.000 3.69 0.00 46.50 2.74
3821 3918 2.342179 GCTCCAGAAACACAGAGCTAC 58.658 52.381 3.69 0.00 46.50 3.58
3822 3919 2.751166 GCTCCAGAAACACAGAGCTA 57.249 50.000 3.69 0.00 46.50 3.32
3823 3920 3.621953 GCTCCAGAAACACAGAGCT 57.378 52.632 3.69 0.00 46.50 4.09
3889 4205 3.245284 CGTGCATATCCACTAAAAGACCG 59.755 47.826 0.00 0.00 33.60 4.79
3904 4220 2.688902 ACCTACTATCCCCGTGCATA 57.311 50.000 0.00 0.00 0.00 3.14
3908 4224 2.817901 CGAAAACCTACTATCCCCGTG 58.182 52.381 0.00 0.00 0.00 4.94
3916 4232 1.750778 CTACGGGGCGAAAACCTACTA 59.249 52.381 0.00 0.00 0.00 1.82
3917 4233 0.533951 CTACGGGGCGAAAACCTACT 59.466 55.000 0.00 0.00 0.00 2.57
3918 4234 0.460811 CCTACGGGGCGAAAACCTAC 60.461 60.000 0.00 0.00 0.00 3.18
3919 4235 0.614415 TCCTACGGGGCGAAAACCTA 60.614 55.000 0.00 0.00 34.39 3.08
3920 4236 1.269703 ATCCTACGGGGCGAAAACCT 61.270 55.000 0.00 0.00 34.39 3.50
3921 4237 1.093496 CATCCTACGGGGCGAAAACC 61.093 60.000 0.00 0.00 34.39 3.27
3922 4238 1.712018 GCATCCTACGGGGCGAAAAC 61.712 60.000 0.00 0.00 34.39 2.43
3923 4239 1.450669 GCATCCTACGGGGCGAAAA 60.451 57.895 0.00 0.00 34.39 2.29
3924 4240 2.188469 GCATCCTACGGGGCGAAA 59.812 61.111 0.00 0.00 34.39 3.46
3925 4241 4.215742 CGCATCCTACGGGGCGAA 62.216 66.667 12.30 0.00 44.80 4.70
3927 4243 4.524318 AACGCATCCTACGGGGCG 62.524 66.667 14.88 14.88 46.35 6.13
3928 4244 2.124860 AAACGCATCCTACGGGGC 60.125 61.111 0.00 0.00 34.39 5.80
3929 4245 1.087771 GTCAAACGCATCCTACGGGG 61.088 60.000 0.00 0.00 34.00 5.73
3930 4246 0.390603 TGTCAAACGCATCCTACGGG 60.391 55.000 0.00 0.00 34.00 5.28
3931 4247 0.999406 CTGTCAAACGCATCCTACGG 59.001 55.000 0.00 0.00 34.00 4.02
3932 4248 0.370273 GCTGTCAAACGCATCCTACG 59.630 55.000 0.00 0.00 0.00 3.51
3933 4249 0.370273 CGCTGTCAAACGCATCCTAC 59.630 55.000 0.00 0.00 0.00 3.18
3934 4250 0.245266 TCGCTGTCAAACGCATCCTA 59.755 50.000 0.00 0.00 0.00 2.94
3935 4251 0.602638 TTCGCTGTCAAACGCATCCT 60.603 50.000 0.00 0.00 0.00 3.24
3936 4252 0.447801 ATTCGCTGTCAAACGCATCC 59.552 50.000 0.00 0.00 0.00 3.51
3937 4253 1.527696 CATTCGCTGTCAAACGCATC 58.472 50.000 0.00 0.00 0.00 3.91
3938 4254 0.454957 GCATTCGCTGTCAAACGCAT 60.455 50.000 0.00 0.00 34.30 4.73
3939 4255 1.082169 GCATTCGCTGTCAAACGCA 60.082 52.632 0.00 0.00 34.30 5.24
3940 4256 0.454957 ATGCATTCGCTGTCAAACGC 60.455 50.000 0.00 0.00 39.64 4.84
3941 4257 1.527696 GATGCATTCGCTGTCAAACG 58.472 50.000 0.00 0.00 39.64 3.60
3942 4258 1.527696 CGATGCATTCGCTGTCAAAC 58.472 50.000 0.00 0.00 41.69 2.93
3943 4259 3.973923 CGATGCATTCGCTGTCAAA 57.026 47.368 0.00 0.00 41.69 2.69
3952 4268 2.382519 GAAATCTGCTGCGATGCATTC 58.617 47.619 0.00 0.00 42.48 2.67
3953 4269 1.066605 GGAAATCTGCTGCGATGCATT 59.933 47.619 0.00 0.00 42.48 3.56
3954 4270 0.666913 GGAAATCTGCTGCGATGCAT 59.333 50.000 0.00 0.00 42.48 3.96
3955 4271 0.393402 AGGAAATCTGCTGCGATGCA 60.393 50.000 7.53 0.00 41.05 3.96
3956 4272 1.262683 GTAGGAAATCTGCTGCGATGC 59.737 52.381 7.53 0.00 0.00 3.91
3957 4273 2.831333 AGTAGGAAATCTGCTGCGATG 58.169 47.619 7.53 0.00 37.05 3.84
3958 4274 3.639094 ACTAGTAGGAAATCTGCTGCGAT 59.361 43.478 1.45 0.00 38.86 4.58
3959 4275 3.024547 ACTAGTAGGAAATCTGCTGCGA 58.975 45.455 1.45 0.00 38.86 5.10
3960 4276 3.119291 CACTAGTAGGAAATCTGCTGCG 58.881 50.000 1.45 0.00 38.86 5.18
3961 4277 2.869192 GCACTAGTAGGAAATCTGCTGC 59.131 50.000 1.45 0.00 38.86 5.25
3962 4278 3.118629 TGGCACTAGTAGGAAATCTGCTG 60.119 47.826 1.45 0.00 38.86 4.41
3963 4279 3.107601 TGGCACTAGTAGGAAATCTGCT 58.892 45.455 1.45 0.00 41.38 4.24
3964 4280 3.543680 TGGCACTAGTAGGAAATCTGC 57.456 47.619 1.45 1.01 0.00 4.26
3965 4281 6.821388 AGTTATGGCACTAGTAGGAAATCTG 58.179 40.000 1.45 0.00 0.00 2.90
3966 4282 6.239064 CGAGTTATGGCACTAGTAGGAAATCT 60.239 42.308 1.45 0.00 0.00 2.40
3967 4283 5.921408 CGAGTTATGGCACTAGTAGGAAATC 59.079 44.000 1.45 0.00 0.00 2.17
3968 4284 5.363005 ACGAGTTATGGCACTAGTAGGAAAT 59.637 40.000 1.45 0.00 31.51 2.17
3969 4285 4.708421 ACGAGTTATGGCACTAGTAGGAAA 59.292 41.667 1.45 0.00 31.51 3.13
3970 4286 4.275810 ACGAGTTATGGCACTAGTAGGAA 58.724 43.478 1.45 0.00 31.51 3.36
3971 4287 3.894759 ACGAGTTATGGCACTAGTAGGA 58.105 45.455 1.45 0.00 31.51 2.94
3972 4288 4.650754 AACGAGTTATGGCACTAGTAGG 57.349 45.455 1.45 0.00 32.02 3.18
3973 4289 6.812160 AGAAAAACGAGTTATGGCACTAGTAG 59.188 38.462 0.00 0.00 32.02 2.57
3974 4290 6.694447 AGAAAAACGAGTTATGGCACTAGTA 58.306 36.000 0.00 0.00 32.02 1.82
3975 4291 5.548406 AGAAAAACGAGTTATGGCACTAGT 58.452 37.500 0.00 0.00 34.41 2.57
3976 4292 5.869888 AGAGAAAAACGAGTTATGGCACTAG 59.130 40.000 0.00 0.00 0.00 2.57
3977 4293 5.790593 AGAGAAAAACGAGTTATGGCACTA 58.209 37.500 0.00 0.00 0.00 2.74
3978 4294 4.642429 AGAGAAAAACGAGTTATGGCACT 58.358 39.130 0.00 0.00 0.00 4.40
3979 4295 5.147162 CAAGAGAAAAACGAGTTATGGCAC 58.853 41.667 0.00 0.00 0.00 5.01
3980 4296 4.215399 CCAAGAGAAAAACGAGTTATGGCA 59.785 41.667 0.00 0.00 0.00 4.92
3981 4297 4.379499 CCCAAGAGAAAAACGAGTTATGGC 60.379 45.833 0.00 0.00 0.00 4.40
3982 4298 5.001232 TCCCAAGAGAAAAACGAGTTATGG 58.999 41.667 0.00 0.00 0.00 2.74
3983 4299 6.554334 TTCCCAAGAGAAAAACGAGTTATG 57.446 37.500 0.00 0.00 0.00 1.90
3984 4300 6.967135 GTTTCCCAAGAGAAAAACGAGTTAT 58.033 36.000 0.00 0.00 37.49 1.89
3985 4301 6.367686 GTTTCCCAAGAGAAAAACGAGTTA 57.632 37.500 0.00 0.00 37.49 2.24
3986 4302 5.244785 GTTTCCCAAGAGAAAAACGAGTT 57.755 39.130 0.00 0.00 37.49 3.01
3987 4303 4.895224 GTTTCCCAAGAGAAAAACGAGT 57.105 40.909 0.00 0.00 37.49 4.18
3991 4307 6.324042 TGTAAACGTTTCCCAAGAGAAAAAC 58.676 36.000 18.42 5.82 37.49 2.43
3992 4308 6.512342 TGTAAACGTTTCCCAAGAGAAAAA 57.488 33.333 18.42 0.00 37.49 1.94
3993 4309 6.512342 TTGTAAACGTTTCCCAAGAGAAAA 57.488 33.333 18.42 0.00 37.49 2.29
3994 4310 6.512091 CGATTGTAAACGTTTCCCAAGAGAAA 60.512 38.462 18.42 0.32 33.40 2.52
3995 4311 5.049954 CGATTGTAAACGTTTCCCAAGAGAA 60.050 40.000 18.42 4.01 0.00 2.87
3996 4312 4.449743 CGATTGTAAACGTTTCCCAAGAGA 59.550 41.667 18.42 1.37 0.00 3.10
3997 4313 4.378046 CCGATTGTAAACGTTTCCCAAGAG 60.378 45.833 18.42 16.61 0.00 2.85
3998 4314 3.499157 CCGATTGTAAACGTTTCCCAAGA 59.501 43.478 18.42 2.42 0.00 3.02
3999 4315 3.251487 ACCGATTGTAAACGTTTCCCAAG 59.749 43.478 18.42 11.80 0.00 3.61
4000 4316 3.003482 CACCGATTGTAAACGTTTCCCAA 59.997 43.478 18.42 20.21 0.00 4.12
4001 4317 2.548904 CACCGATTGTAAACGTTTCCCA 59.451 45.455 18.42 12.70 0.00 4.37
4100 4416 4.899352 AAGATTTCTGTGGACTAGCAGT 57.101 40.909 0.00 0.00 34.57 4.40
4102 4418 5.163301 GGGATAAGATTTCTGTGGACTAGCA 60.163 44.000 0.00 0.00 0.00 3.49
4142 4477 0.326264 AGGAAAGAAGCGATGCAGGT 59.674 50.000 0.00 0.00 0.00 4.00
4166 4501 4.657408 TGCTGGCCATGGCACGAA 62.657 61.111 36.56 19.41 44.11 3.85
4188 4527 4.824515 AGCCTCGCCGGTCTAGCT 62.825 66.667 1.90 4.13 34.25 3.32
4226 4565 3.815407 CTTGGGGTGGTTGCTGGCT 62.815 63.158 0.00 0.00 0.00 4.75
4247 4586 2.038975 ACGGAGCCAGCCTAGGAA 59.961 61.111 14.75 0.00 0.00 3.36
4248 4587 2.442272 GACGGAGCCAGCCTAGGA 60.442 66.667 14.75 0.00 0.00 2.94
4290 4629 1.202330 CAGTTCCAGCAGAGGAGGAT 58.798 55.000 0.00 0.00 39.25 3.24
4455 4795 3.301642 GCGATGCAGTTGTAGCAAAAATC 59.698 43.478 0.00 0.00 46.27 2.17
4456 4796 3.244976 GCGATGCAGTTGTAGCAAAAAT 58.755 40.909 0.00 0.00 46.27 1.82
4517 4857 1.815196 CCACAAAACTGCACAGCCA 59.185 52.632 0.00 0.00 0.00 4.75
4567 4907 1.263356 AGCACGGTTGTAGCTTCCTA 58.737 50.000 0.00 0.00 34.37 2.94
4599 4939 5.278463 GCTGAAACATTTTTGTAGCCTCTCA 60.278 40.000 0.00 0.00 30.50 3.27
4606 4946 3.005367 ACCCCGCTGAAACATTTTTGTAG 59.995 43.478 0.00 0.00 0.00 2.74
4630 4970 3.606846 CGTTCGATGCAAACATGTCAGTT 60.607 43.478 0.00 0.00 36.35 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.