Multiple sequence alignment - TraesCS3B01G106900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G106900 chr3B 100.000 2888 0 0 1 2888 72479137 72476250 0.000000e+00 5334.0
1 TraesCS3B01G106900 chr3D 91.269 1592 63 39 504 2044 46472367 46470801 0.000000e+00 2100.0
2 TraesCS3B01G106900 chr3D 88.502 287 29 4 2136 2421 301533178 301532895 7.660000e-91 344.0
3 TraesCS3B01G106900 chr3D 88.153 287 31 3 2130 2415 272003533 272003817 3.560000e-89 339.0
4 TraesCS3B01G106900 chr3D 88.889 189 7 6 2421 2609 46469016 46468842 1.350000e-53 220.0
5 TraesCS3B01G106900 chr3D 96.364 55 2 0 1 55 388517707 388517653 1.100000e-14 91.6
6 TraesCS3B01G106900 chr3D 96.364 55 2 0 1 55 511669514 511669460 1.100000e-14 91.6
7 TraesCS3B01G106900 chr3D 95.556 45 2 0 2589 2633 46468832 46468788 3.990000e-09 73.1
8 TraesCS3B01G106900 chr3A 89.435 1344 70 28 773 2079 57887078 57885770 0.000000e+00 1629.0
9 TraesCS3B01G106900 chr3A 86.090 266 32 3 56 321 57888215 57887955 6.090000e-72 281.0
10 TraesCS3B01G106900 chr3A 85.818 275 17 11 526 783 57887613 57887344 3.670000e-69 272.0
11 TraesCS3B01G106900 chr3A 93.220 59 3 1 1 59 509565896 509565839 5.130000e-13 86.1
12 TraesCS3B01G106900 chr3A 92.453 53 1 2 2077 2126 57885456 57885404 3.990000e-09 73.1
13 TraesCS3B01G106900 chr5B 88.469 529 30 16 978 1483 212786382 212785862 6.840000e-171 610.0
14 TraesCS3B01G106900 chr5A 78.010 955 138 46 1000 1926 688832016 688831106 4.240000e-148 534.0
15 TraesCS3B01G106900 chr7D 88.312 462 28 9 1108 1566 201235147 201234709 5.480000e-147 531.0
16 TraesCS3B01G106900 chr4B 77.636 939 128 49 1001 1898 650702303 650701406 2.000000e-136 496.0
17 TraesCS3B01G106900 chr4B 86.246 349 45 2 1000 1345 650706885 650706537 2.720000e-100 375.0
18 TraesCS3B01G106900 chr4D 77.037 945 140 53 1000 1898 504115841 504114928 3.370000e-129 472.0
19 TraesCS3B01G106900 chr4D 86.246 349 45 2 1000 1345 504178227 504177879 2.720000e-100 375.0
20 TraesCS3B01G106900 chr1D 92.632 285 18 3 1049 1330 453204876 453205160 9.630000e-110 407.0
21 TraesCS3B01G106900 chr2A 90.813 283 24 2 2136 2418 81019545 81019825 7.550000e-101 377.0
22 TraesCS3B01G106900 chr2A 89.247 279 25 5 2139 2415 413882503 413882228 7.660000e-91 344.0
23 TraesCS3B01G106900 chr6D 88.356 292 31 3 2136 2426 372261930 372261641 5.920000e-92 348.0
24 TraesCS3B01G106900 chr2D 88.276 290 30 4 2130 2418 27500016 27500302 7.660000e-91 344.0
25 TraesCS3B01G106900 chr2D 96.226 53 2 0 1 53 107835695 107835747 1.430000e-13 87.9
26 TraesCS3B01G106900 chr7B 87.931 290 32 3 2136 2424 29271591 29271304 3.560000e-89 339.0
27 TraesCS3B01G106900 chr5D 88.153 287 31 3 2130 2415 445778164 445778448 3.560000e-89 339.0
28 TraesCS3B01G106900 chr5D 98.182 55 1 0 1 55 410251925 410251871 2.370000e-16 97.1
29 TraesCS3B01G106900 chr5D 96.429 56 2 0 1 56 498487755 498487810 3.060000e-15 93.5
30 TraesCS3B01G106900 chr4A 87.889 289 31 3 2136 2424 125809365 125809081 1.280000e-88 337.0
31 TraesCS3B01G106900 chr1A 96.552 58 2 0 1 58 33217032 33217089 2.370000e-16 97.1
32 TraesCS3B01G106900 chr1A 96.491 57 2 0 1 57 128815556 128815500 8.520000e-16 95.3
33 TraesCS3B01G106900 chr7A 94.643 56 3 0 1 56 652536645 652536590 1.430000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G106900 chr3B 72476250 72479137 2887 True 5334.000 5334 100.000000 1 2888 1 chr3B.!!$R1 2887
1 TraesCS3B01G106900 chr3D 46468788 46472367 3579 True 797.700 2100 91.904667 504 2633 3 chr3D.!!$R4 2129
2 TraesCS3B01G106900 chr3A 57885404 57888215 2811 True 563.775 1629 88.449000 56 2126 4 chr3A.!!$R2 2070
3 TraesCS3B01G106900 chr5B 212785862 212786382 520 True 610.000 610 88.469000 978 1483 1 chr5B.!!$R1 505
4 TraesCS3B01G106900 chr5A 688831106 688832016 910 True 534.000 534 78.010000 1000 1926 1 chr5A.!!$R1 926
5 TraesCS3B01G106900 chr4B 650701406 650702303 897 True 496.000 496 77.636000 1001 1898 1 chr4B.!!$R1 897
6 TraesCS3B01G106900 chr4D 504114928 504115841 913 True 472.000 472 77.037000 1000 1898 1 chr4D.!!$R1 898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.036952 CAGTGAGCTCGGTCACCAAT 60.037 55.0 21.54 4.96 46.94 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 2586 1.192146 TCAGCTAGTTCAAGGGCGGT 61.192 55.0 0.0 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.806640 TTGAATTTTGAATCTGGAGGCC 57.193 40.909 0.00 0.00 0.00 5.19
22 23 4.051661 TGAATTTTGAATCTGGAGGCCT 57.948 40.909 3.86 3.86 0.00 5.19
23 24 4.019174 TGAATTTTGAATCTGGAGGCCTC 58.981 43.478 25.59 25.59 0.00 4.70
33 34 2.899505 GAGGCCTCCAGTGAGCTC 59.100 66.667 23.19 6.82 37.29 4.09
34 35 3.073735 AGGCCTCCAGTGAGCTCG 61.074 66.667 9.64 0.00 37.29 5.03
35 36 4.154347 GGCCTCCAGTGAGCTCGG 62.154 72.222 9.64 4.39 37.29 4.63
36 37 3.386237 GCCTCCAGTGAGCTCGGT 61.386 66.667 9.64 0.00 37.29 4.69
37 38 2.888863 CCTCCAGTGAGCTCGGTC 59.111 66.667 9.64 2.22 37.29 4.79
38 39 1.979155 CCTCCAGTGAGCTCGGTCA 60.979 63.158 9.64 0.00 37.29 4.02
39 40 1.214062 CTCCAGTGAGCTCGGTCAC 59.786 63.158 18.61 18.61 46.22 3.67
40 41 2.219325 CTCCAGTGAGCTCGGTCACC 62.219 65.000 21.54 7.76 46.94 4.02
41 42 2.574018 CCAGTGAGCTCGGTCACCA 61.574 63.158 21.54 0.00 46.94 4.17
42 43 1.367471 CAGTGAGCTCGGTCACCAA 59.633 57.895 21.54 0.00 46.94 3.67
43 44 0.036952 CAGTGAGCTCGGTCACCAAT 60.037 55.000 21.54 4.96 46.94 3.16
44 45 0.036952 AGTGAGCTCGGTCACCAATG 60.037 55.000 21.54 0.00 46.94 2.82
45 46 1.021390 GTGAGCTCGGTCACCAATGG 61.021 60.000 16.18 0.00 40.96 3.16
46 47 2.045926 AGCTCGGTCACCAATGGC 60.046 61.111 0.00 0.00 0.00 4.40
47 48 2.359850 GCTCGGTCACCAATGGCA 60.360 61.111 0.00 0.00 29.15 4.92
48 49 2.401766 GCTCGGTCACCAATGGCAG 61.402 63.158 0.00 0.00 29.15 4.85
49 50 1.003355 CTCGGTCACCAATGGCAGT 60.003 57.895 0.00 0.00 29.15 4.40
50 51 0.606401 CTCGGTCACCAATGGCAGTT 60.606 55.000 0.00 0.00 29.15 3.16
51 52 0.179004 TCGGTCACCAATGGCAGTTT 60.179 50.000 0.00 0.00 29.15 2.66
52 53 0.240945 CGGTCACCAATGGCAGTTTC 59.759 55.000 0.00 0.00 29.15 2.78
53 54 0.603065 GGTCACCAATGGCAGTTTCC 59.397 55.000 0.00 0.00 29.15 3.13
54 55 0.240945 GTCACCAATGGCAGTTTCCG 59.759 55.000 0.00 0.00 0.00 4.30
55 56 0.893270 TCACCAATGGCAGTTTCCGG 60.893 55.000 0.00 0.00 0.00 5.14
56 57 1.152830 ACCAATGGCAGTTTCCGGT 59.847 52.632 0.00 0.00 0.00 5.28
57 58 0.469144 ACCAATGGCAGTTTCCGGTT 60.469 50.000 0.00 0.00 0.00 4.44
58 59 0.038343 CCAATGGCAGTTTCCGGTTG 60.038 55.000 0.00 0.00 0.00 3.77
63 64 1.282875 GCAGTTTCCGGTTGTCAGC 59.717 57.895 0.00 0.00 0.00 4.26
78 79 1.134670 GTCAGCCCGCTATATCATCCC 60.135 57.143 0.00 0.00 0.00 3.85
89 90 3.914426 ATATCATCCCCTATCCGCAAC 57.086 47.619 0.00 0.00 0.00 4.17
92 93 1.774254 TCATCCCCTATCCGCAACATT 59.226 47.619 0.00 0.00 0.00 2.71
151 152 3.006061 TGGACCGACCTCCATGAAT 57.994 52.632 0.00 0.00 35.23 2.57
160 161 3.499918 CGACCTCCATGAATGCCTTAATC 59.500 47.826 0.00 0.00 0.00 1.75
170 171 7.068593 CCATGAATGCCTTAATCTGGAAACTAA 59.931 37.037 0.00 0.00 0.00 2.24
240 241 8.202137 ACACATATACCTAGAAACATGGTGTAC 58.798 37.037 0.00 0.00 35.48 2.90
241 242 7.381408 CACATATACCTAGAAACATGGTGTACG 59.619 40.741 0.00 0.00 35.48 3.67
250 251 1.438651 CATGGTGTACGTGTGGAAGG 58.561 55.000 0.00 0.00 0.00 3.46
251 252 1.053424 ATGGTGTACGTGTGGAAGGT 58.947 50.000 0.00 0.00 0.00 3.50
252 253 0.831966 TGGTGTACGTGTGGAAGGTT 59.168 50.000 0.00 0.00 0.00 3.50
260 261 3.208594 ACGTGTGGAAGGTTTTTAGGTC 58.791 45.455 0.00 0.00 0.00 3.85
265 266 4.336153 TGTGGAAGGTTTTTAGGTCGAAAC 59.664 41.667 0.00 0.00 35.54 2.78
266 267 4.336153 GTGGAAGGTTTTTAGGTCGAAACA 59.664 41.667 0.00 0.00 37.46 2.83
281 282 4.686554 GTCGAAACAGTTAACATGAGAGCT 59.313 41.667 8.61 0.00 0.00 4.09
282 283 5.862323 GTCGAAACAGTTAACATGAGAGCTA 59.138 40.000 8.61 0.00 0.00 3.32
283 284 5.862323 TCGAAACAGTTAACATGAGAGCTAC 59.138 40.000 8.61 0.00 0.00 3.58
284 285 5.062308 CGAAACAGTTAACATGAGAGCTACC 59.938 44.000 8.61 0.00 0.00 3.18
285 286 5.483685 AACAGTTAACATGAGAGCTACCA 57.516 39.130 8.61 0.00 0.00 3.25
312 313 2.179949 GCAAATCTGCGGCTCTTTAC 57.820 50.000 0.00 0.00 39.20 2.01
313 314 1.529826 GCAAATCTGCGGCTCTTTACG 60.530 52.381 0.00 0.00 39.20 3.18
325 540 5.176958 GCGGCTCTTTACGATATGTAATGTT 59.823 40.000 0.00 0.00 42.45 2.71
338 553 9.817365 CGATATGTAATGTTCATCCTCAAAATC 57.183 33.333 0.00 0.00 0.00 2.17
342 557 9.911788 ATGTAATGTTCATCCTCAAAATCTACT 57.088 29.630 0.00 0.00 0.00 2.57
343 558 9.383519 TGTAATGTTCATCCTCAAAATCTACTC 57.616 33.333 0.00 0.00 0.00 2.59
344 559 9.606631 GTAATGTTCATCCTCAAAATCTACTCT 57.393 33.333 0.00 0.00 0.00 3.24
374 589 6.899393 TTGCAACTCTGAAATTCAAGGTAT 57.101 33.333 0.00 0.00 0.00 2.73
438 653 4.935702 TGGAGCTGAAAAGTTTGAATGTG 58.064 39.130 0.00 0.00 0.00 3.21
450 665 5.401550 AGTTTGAATGTGGAATAACATGCG 58.598 37.500 0.00 0.00 38.75 4.73
451 666 4.368874 TTGAATGTGGAATAACATGCGG 57.631 40.909 0.00 0.00 38.75 5.69
452 667 3.351740 TGAATGTGGAATAACATGCGGT 58.648 40.909 0.00 0.00 38.75 5.68
453 668 4.518249 TGAATGTGGAATAACATGCGGTA 58.482 39.130 0.00 0.00 38.75 4.02
454 669 5.129634 TGAATGTGGAATAACATGCGGTAT 58.870 37.500 0.00 0.00 38.75 2.73
455 670 6.292150 TGAATGTGGAATAACATGCGGTATA 58.708 36.000 0.00 0.00 38.75 1.47
456 671 6.203915 TGAATGTGGAATAACATGCGGTATAC 59.796 38.462 0.00 0.00 38.75 1.47
457 672 4.688879 ATGTGGAATAACATGCGGTATACG 59.311 41.667 0.00 0.00 39.32 3.06
458 673 5.510009 ATGTGGAATAACATGCGGTATACGA 60.510 40.000 0.00 0.00 41.36 3.43
459 674 7.283833 ATGTGGAATAACATGCGGTATACGAG 61.284 42.308 0.00 0.00 41.36 4.18
460 675 9.559880 ATGTGGAATAACATGCGGTATACGAGT 62.560 40.741 0.00 0.00 41.36 4.18
471 686 3.778618 GGTATACGAGTTGGACTTGGAC 58.221 50.000 0.00 0.00 33.85 4.02
472 687 2.649331 ATACGAGTTGGACTTGGACG 57.351 50.000 0.00 0.00 33.85 4.79
473 688 0.599558 TACGAGTTGGACTTGGACGG 59.400 55.000 0.00 0.00 33.85 4.79
474 689 1.111116 ACGAGTTGGACTTGGACGGA 61.111 55.000 0.00 0.00 33.85 4.69
475 690 0.388649 CGAGTTGGACTTGGACGGAG 60.389 60.000 0.00 0.00 0.00 4.63
487 702 4.680487 ACGGAGTGGCTAGTAGGG 57.320 61.111 0.00 0.00 42.51 3.53
488 703 1.696075 ACGGAGTGGCTAGTAGGGT 59.304 57.895 0.00 0.00 42.51 4.34
489 704 0.683504 ACGGAGTGGCTAGTAGGGTG 60.684 60.000 0.00 0.00 42.51 4.61
490 705 1.823976 GGAGTGGCTAGTAGGGTGC 59.176 63.158 0.00 0.00 0.00 5.01
491 706 1.437986 GAGTGGCTAGTAGGGTGCG 59.562 63.158 0.00 0.00 0.00 5.34
492 707 1.305046 AGTGGCTAGTAGGGTGCGT 60.305 57.895 0.00 0.00 0.00 5.24
493 708 1.153628 GTGGCTAGTAGGGTGCGTG 60.154 63.158 0.00 0.00 0.00 5.34
494 709 2.202892 GGCTAGTAGGGTGCGTGC 60.203 66.667 0.00 0.00 0.00 5.34
495 710 2.577059 GCTAGTAGGGTGCGTGCA 59.423 61.111 0.00 0.00 0.00 4.57
496 711 1.810030 GCTAGTAGGGTGCGTGCAC 60.810 63.158 16.40 16.40 45.49 4.57
497 712 1.890894 CTAGTAGGGTGCGTGCACT 59.109 57.895 22.82 8.30 45.52 4.40
502 717 3.357079 GGGTGCGTGCACTCCTTG 61.357 66.667 22.82 0.00 45.52 3.61
503 718 3.357079 GGTGCGTGCACTCCTTGG 61.357 66.667 22.82 0.00 45.52 3.61
504 719 2.280797 GTGCGTGCACTCCTTGGA 60.281 61.111 17.32 0.00 43.12 3.53
505 720 1.891919 GTGCGTGCACTCCTTGGAA 60.892 57.895 17.32 0.00 43.12 3.53
506 721 1.073025 TGCGTGCACTCCTTGGAAT 59.927 52.632 16.19 0.00 0.00 3.01
507 722 0.323302 TGCGTGCACTCCTTGGAATA 59.677 50.000 16.19 0.00 0.00 1.75
513 728 4.009675 GTGCACTCCTTGGAATAACATGA 58.990 43.478 10.32 0.00 0.00 3.07
585 800 0.179001 ACTTGTTTCTCCAACGGGGG 60.179 55.000 0.00 0.00 38.36 5.40
607 823 1.037493 GTCATGCCATGCCATCATGT 58.963 50.000 0.00 0.00 46.64 3.21
609 825 1.133606 TCATGCCATGCCATCATGTCT 60.134 47.619 0.00 0.00 46.64 3.41
696 923 3.123453 GCAAGCCGTTGAAAAATCCATTC 59.877 43.478 0.00 0.00 35.46 2.67
704 931 5.408299 CGTTGAAAAATCCATTCCCCTTTTC 59.592 40.000 0.00 0.00 36.81 2.29
906 1430 5.757320 CACACACCAGCAAAAATATTCCAAA 59.243 36.000 0.00 0.00 0.00 3.28
909 1433 6.146021 CACACCAGCAAAAATATTCCAAAGAC 59.854 38.462 0.00 0.00 0.00 3.01
919 1443 6.428385 AATATTCCAAAGACGCAAGAAGAG 57.572 37.500 0.00 0.00 43.62 2.85
920 1444 2.169832 TCCAAAGACGCAAGAAGAGG 57.830 50.000 0.00 0.00 43.62 3.69
921 1445 0.519077 CCAAAGACGCAAGAAGAGGC 59.481 55.000 0.00 0.00 43.62 4.70
922 1446 1.517242 CAAAGACGCAAGAAGAGGCT 58.483 50.000 0.00 0.00 36.72 4.58
923 1447 2.612972 CCAAAGACGCAAGAAGAGGCTA 60.613 50.000 0.00 0.00 32.34 3.93
924 1448 2.663826 AAGACGCAAGAAGAGGCTAG 57.336 50.000 0.00 0.00 32.34 3.42
925 1449 1.840737 AGACGCAAGAAGAGGCTAGA 58.159 50.000 0.00 0.00 31.41 2.43
1495 2108 4.785453 CCTCCTCCACGGCCAAGC 62.785 72.222 2.24 0.00 0.00 4.01
1566 2194 3.827898 CCGAGCCACGAGGAGTCC 61.828 72.222 1.86 0.00 45.77 3.85
1631 2289 4.742649 AGTCGAGCAGGCGAGGGA 62.743 66.667 0.00 0.00 41.49 4.20
1998 2705 8.101419 GTCTTTTCCCCATTTTAGAGTAGAGAA 58.899 37.037 0.00 0.00 0.00 2.87
2002 2709 8.855804 TTCCCCATTTTAGAGTAGAGAATAGT 57.144 34.615 0.00 0.00 0.00 2.12
2067 2777 6.565974 TGTTAGGCCTCTCTGGATATATCTT 58.434 40.000 9.68 0.00 38.35 2.40
2068 2778 7.019388 TGTTAGGCCTCTCTGGATATATCTTT 58.981 38.462 9.68 0.00 38.35 2.52
2069 2779 7.179338 TGTTAGGCCTCTCTGGATATATCTTTC 59.821 40.741 9.68 0.00 38.35 2.62
2094 2827 9.304335 TCGGTATATTACTCATAGGAATGACAA 57.696 33.333 0.00 0.00 37.20 3.18
2110 2843 8.093307 AGGAATGACAATAGCTATGATGTACTG 58.907 37.037 7.09 2.36 0.00 2.74
2111 2844 8.090831 GGAATGACAATAGCTATGATGTACTGA 58.909 37.037 7.09 0.00 0.00 3.41
2112 2845 9.650539 GAATGACAATAGCTATGATGTACTGAT 57.349 33.333 7.09 0.00 0.00 2.90
2116 2849 9.481340 GACAATAGCTATGATGTACTGATTTCA 57.519 33.333 7.09 0.00 0.00 2.69
2117 2850 9.836864 ACAATAGCTATGATGTACTGATTTCAA 57.163 29.630 7.09 0.00 0.00 2.69
2122 2855 8.209584 AGCTATGATGTACTGATTTCAAGTCAT 58.790 33.333 0.00 0.00 0.00 3.06
2123 2856 8.834465 GCTATGATGTACTGATTTCAAGTCATT 58.166 33.333 0.00 0.00 0.00 2.57
2126 2859 8.722480 TGATGTACTGATTTCAAGTCATTAGG 57.278 34.615 0.00 0.00 0.00 2.69
2127 2860 8.321353 TGATGTACTGATTTCAAGTCATTAGGT 58.679 33.333 0.00 0.00 0.00 3.08
2128 2861 8.723942 ATGTACTGATTTCAAGTCATTAGGTC 57.276 34.615 0.00 0.00 0.00 3.85
2130 2863 9.031537 TGTACTGATTTCAAGTCATTAGGTCTA 57.968 33.333 0.00 0.00 0.00 2.59
2131 2864 9.303537 GTACTGATTTCAAGTCATTAGGTCTAC 57.696 37.037 0.00 0.00 0.00 2.59
2132 2865 7.036220 ACTGATTTCAAGTCATTAGGTCTACG 58.964 38.462 0.00 0.00 0.00 3.51
2133 2866 6.338146 TGATTTCAAGTCATTAGGTCTACGG 58.662 40.000 0.00 0.00 0.00 4.02
2142 2875 1.688772 TAGGTCTACGGCTGCTAAGG 58.311 55.000 0.00 0.00 0.00 2.69
2145 2878 0.528684 GTCTACGGCTGCTAAGGCTG 60.529 60.000 0.00 0.00 46.66 4.85
2155 2888 0.253327 GCTAAGGCTGCCACCTAGTT 59.747 55.000 22.65 7.66 39.93 2.24
2161 2894 3.421844 AGGCTGCCACCTAGTTAAAAAG 58.578 45.455 22.65 0.00 38.67 2.27
2168 2901 7.011499 TGCCACCTAGTTAAAAAGTCTGATA 57.989 36.000 0.00 0.00 0.00 2.15
2176 2909 7.396540 AGTTAAAAAGTCTGATATGGCAAGG 57.603 36.000 0.00 0.00 0.00 3.61
2187 2920 7.715249 GTCTGATATGGCAAGGTAATTAACAGA 59.285 37.037 2.78 0.00 0.00 3.41
2189 2922 8.815565 TGATATGGCAAGGTAATTAACAGAAA 57.184 30.769 2.78 0.00 0.00 2.52
2199 2932 9.454859 AAGGTAATTAACAGAAAAGAGATGAGG 57.545 33.333 2.78 0.00 0.00 3.86
2221 3336 3.955551 GGTGGTGACCCTAAAAAGAAACA 59.044 43.478 0.00 0.00 36.03 2.83
2251 3366 1.197036 GCGAGAACCTAGGCAAAACAC 59.803 52.381 9.30 0.00 0.00 3.32
2257 3372 6.072673 CGAGAACCTAGGCAAAACACTTAAAT 60.073 38.462 9.30 0.00 0.00 1.40
2263 3378 7.286775 ACCTAGGCAAAACACTTAAATGAAAGA 59.713 33.333 9.30 0.00 0.00 2.52
2264 3379 8.141268 CCTAGGCAAAACACTTAAATGAAAGAA 58.859 33.333 0.00 0.00 0.00 2.52
2265 3380 9.696917 CTAGGCAAAACACTTAAATGAAAGAAT 57.303 29.630 0.00 0.00 0.00 2.40
2267 3382 8.424133 AGGCAAAACACTTAAATGAAAGAATCT 58.576 29.630 0.00 0.00 0.00 2.40
2275 3390 9.350357 CACTTAAATGAAAGAATCTCACCAATG 57.650 33.333 0.00 0.00 0.00 2.82
2285 3400 5.892119 AGAATCTCACCAATGCATGAAGAAT 59.108 36.000 0.00 0.00 0.00 2.40
2295 3410 6.369340 CCAATGCATGAAGAATTTTAGTTGCA 59.631 34.615 0.00 8.21 42.35 4.08
2299 3414 7.629130 TGCATGAAGAATTTTAGTTGCAAAAC 58.371 30.769 0.00 0.00 36.06 2.43
2319 3434 8.729756 GCAAAACCATTAAATAAAGGATGCTTT 58.270 29.630 16.85 16.85 33.50 3.51
2322 3437 9.599866 AAACCATTAAATAAAGGATGCTTTAGC 57.400 29.630 21.78 0.00 42.50 3.09
2339 3454 5.772521 CTTTAGCACCAACAAGTTAAGCAT 58.227 37.500 0.00 0.00 0.00 3.79
2349 3464 6.183360 CCAACAAGTTAAGCATCTACGCATTA 60.183 38.462 0.00 0.00 0.00 1.90
2354 3469 1.424638 AGCATCTACGCATTAGGGGT 58.575 50.000 0.00 0.00 45.69 4.95
2355 3470 1.768870 AGCATCTACGCATTAGGGGTT 59.231 47.619 0.00 0.00 43.28 4.11
2368 3483 6.330278 GCATTAGGGGTTTTAGTTGCTAAAG 58.670 40.000 2.26 0.00 37.27 1.85
2370 3485 7.524863 GCATTAGGGGTTTTAGTTGCTAAAGTT 60.525 37.037 2.26 0.00 37.27 2.66
2375 3490 8.760735 AGGGGTTTTAGTTGCTAAAGTTTTTAA 58.239 29.630 0.00 0.00 37.27 1.52
2388 3503 9.020813 GCTAAAGTTTTTAATATGCTTAGCACC 57.979 33.333 9.82 0.00 43.04 5.01
2393 3508 8.408601 AGTTTTTAATATGCTTAGCACCTCATG 58.591 33.333 9.82 0.00 43.04 3.07
2402 3517 4.382685 GCTTAGCACCTCATGTAAGTACCA 60.383 45.833 0.00 0.00 30.64 3.25
2411 4069 5.589855 CCTCATGTAAGTACCAATGCATTGA 59.410 40.000 35.47 17.69 40.14 2.57
2412 4070 6.095300 CCTCATGTAAGTACCAATGCATTGAA 59.905 38.462 35.47 22.13 40.14 2.69
2415 4073 6.892658 TGTAAGTACCAATGCATTGAAAGT 57.107 33.333 35.47 26.62 40.14 2.66
2418 4076 6.515272 AAGTACCAATGCATTGAAAGTAGG 57.485 37.500 35.47 21.51 40.14 3.18
2445 4562 3.276857 AGCAACTGTCATATGGCTTCAG 58.723 45.455 9.09 11.43 0.00 3.02
2446 4563 3.012518 GCAACTGTCATATGGCTTCAGT 58.987 45.455 9.09 11.98 40.40 3.41
2447 4564 3.064545 GCAACTGTCATATGGCTTCAGTC 59.935 47.826 9.09 2.73 38.21 3.51
2448 4565 3.170791 ACTGTCATATGGCTTCAGTCG 57.829 47.619 9.09 0.00 34.87 4.18
2449 4566 2.159043 ACTGTCATATGGCTTCAGTCGG 60.159 50.000 9.09 0.00 34.87 4.79
2450 4567 1.221414 GTCATATGGCTTCAGTCGGC 58.779 55.000 0.00 0.00 0.00 5.54
2451 4568 0.829990 TCATATGGCTTCAGTCGGCA 59.170 50.000 2.13 0.00 41.36 5.69
2464 4581 4.871513 TCAGTCGGCATAATAACTGCTAG 58.128 43.478 0.00 0.00 39.15 3.42
2482 4599 6.641314 ACTGCTAGTATAACGATTTTGATCCG 59.359 38.462 0.00 0.00 0.00 4.18
2491 4608 6.377327 AACGATTTTGATCCGAAATAGCAT 57.623 33.333 9.91 1.21 28.70 3.79
2492 4609 7.490962 AACGATTTTGATCCGAAATAGCATA 57.509 32.000 9.91 0.00 28.70 3.14
2493 4610 7.121974 ACGATTTTGATCCGAAATAGCATAG 57.878 36.000 9.91 0.00 28.70 2.23
2494 4611 6.017933 CGATTTTGATCCGAAATAGCATAGC 58.982 40.000 4.65 0.00 28.70 2.97
2495 4612 6.347644 CGATTTTGATCCGAAATAGCATAGCA 60.348 38.462 4.65 0.00 28.70 3.49
2529 4646 5.992829 AGTCGTTATATGTCTCTCAGTCGAT 59.007 40.000 0.00 0.00 0.00 3.59
2543 4660 8.516234 TCTCTCAGTCGATATAATTTAAGGAGC 58.484 37.037 0.00 0.00 0.00 4.70
2545 4662 8.516234 TCTCAGTCGATATAATTTAAGGAGCTC 58.484 37.037 4.71 4.71 0.00 4.09
2576 4693 2.159128 CCGAGCTCATAGCCTCCATATG 60.159 54.545 15.40 0.00 43.77 1.78
2578 4695 3.056250 CGAGCTCATAGCCTCCATATGTT 60.056 47.826 15.40 0.00 43.77 2.71
2579 4696 4.562347 CGAGCTCATAGCCTCCATATGTTT 60.562 45.833 15.40 0.00 43.77 2.83
2580 4697 4.649692 AGCTCATAGCCTCCATATGTTTG 58.350 43.478 1.24 0.00 43.77 2.93
2581 4698 4.349048 AGCTCATAGCCTCCATATGTTTGA 59.651 41.667 1.24 0.00 43.77 2.69
2583 4700 5.180868 GCTCATAGCCTCCATATGTTTGAAG 59.819 44.000 1.24 0.00 34.48 3.02
2584 4701 6.499106 TCATAGCCTCCATATGTTTGAAGA 57.501 37.500 1.24 0.00 33.29 2.87
2585 4702 6.291377 TCATAGCCTCCATATGTTTGAAGAC 58.709 40.000 1.24 0.00 33.29 3.01
2629 4774 0.109597 CTCCAAATCCAACTGCACGC 60.110 55.000 0.00 0.00 0.00 5.34
2633 4778 3.545124 AATCCAACTGCACGCGGGA 62.545 57.895 15.48 6.49 0.00 5.14
2634 4779 3.545124 ATCCAACTGCACGCGGGAA 62.545 57.895 15.48 0.00 0.00 3.97
2635 4780 3.726517 CCAACTGCACGCGGGAAG 61.727 66.667 16.89 16.89 0.00 3.46
2636 4781 2.972505 CAACTGCACGCGGGAAGT 60.973 61.111 18.72 18.72 0.00 3.01
2637 4782 2.203153 AACTGCACGCGGGAAGTT 60.203 55.556 29.29 29.29 0.00 2.66
2638 4783 1.822186 AACTGCACGCGGGAAGTTT 60.822 52.632 29.29 13.37 28.57 2.66
2639 4784 1.782028 AACTGCACGCGGGAAGTTTC 61.782 55.000 29.29 0.88 28.57 2.78
2640 4785 1.961277 CTGCACGCGGGAAGTTTCT 60.961 57.895 15.48 0.00 0.00 2.52
2641 4786 1.507141 CTGCACGCGGGAAGTTTCTT 61.507 55.000 15.48 0.00 0.00 2.52
2642 4787 1.206831 GCACGCGGGAAGTTTCTTC 59.793 57.895 15.48 1.39 0.00 2.87
2643 4788 1.228657 GCACGCGGGAAGTTTCTTCT 61.229 55.000 15.48 0.00 0.00 2.85
2644 4789 1.226746 CACGCGGGAAGTTTCTTCTT 58.773 50.000 12.47 0.00 0.00 2.52
2645 4790 1.194772 CACGCGGGAAGTTTCTTCTTC 59.805 52.381 12.47 0.00 41.92 2.87
2646 4791 1.070289 ACGCGGGAAGTTTCTTCTTCT 59.930 47.619 12.47 0.00 42.19 2.85
2647 4792 2.143925 CGCGGGAAGTTTCTTCTTCTT 58.856 47.619 0.00 0.00 42.19 2.52
2648 4793 3.243975 ACGCGGGAAGTTTCTTCTTCTTA 60.244 43.478 12.47 0.00 42.19 2.10
2649 4794 3.933332 CGCGGGAAGTTTCTTCTTCTTAT 59.067 43.478 0.00 0.00 42.19 1.73
2650 4795 4.201724 CGCGGGAAGTTTCTTCTTCTTATG 60.202 45.833 0.00 0.00 42.19 1.90
2651 4796 4.437524 GCGGGAAGTTTCTTCTTCTTATGC 60.438 45.833 8.96 3.12 42.19 3.14
2652 4797 4.201724 CGGGAAGTTTCTTCTTCTTATGCG 60.202 45.833 8.96 0.00 42.19 4.73
2653 4798 4.437524 GGGAAGTTTCTTCTTCTTATGCGC 60.438 45.833 0.00 0.00 42.19 6.09
2654 4799 4.437524 GGAAGTTTCTTCTTCTTATGCGCC 60.438 45.833 4.18 0.00 42.19 6.53
2655 4800 3.674997 AGTTTCTTCTTCTTATGCGCCA 58.325 40.909 4.18 0.00 0.00 5.69
2656 4801 3.437049 AGTTTCTTCTTCTTATGCGCCAC 59.563 43.478 4.18 0.00 0.00 5.01
2657 4802 2.760634 TCTTCTTCTTATGCGCCACA 57.239 45.000 4.18 0.00 0.00 4.17
2658 4803 3.266510 TCTTCTTCTTATGCGCCACAT 57.733 42.857 4.18 0.00 43.18 3.21
2659 4804 2.938451 TCTTCTTCTTATGCGCCACATG 59.062 45.455 4.18 0.00 40.06 3.21
2660 4805 1.016627 TCTTCTTATGCGCCACATGC 58.983 50.000 4.18 0.00 40.06 4.06
2671 4816 2.857592 GCCACATGCGAGATTTGAAT 57.142 45.000 0.00 0.00 0.00 2.57
2672 4817 2.724349 GCCACATGCGAGATTTGAATC 58.276 47.619 0.00 0.00 35.64 2.52
2673 4818 2.097954 GCCACATGCGAGATTTGAATCA 59.902 45.455 6.50 0.00 37.89 2.57
2674 4819 3.427909 GCCACATGCGAGATTTGAATCAA 60.428 43.478 6.50 0.00 37.89 2.57
2675 4820 4.100529 CCACATGCGAGATTTGAATCAAC 58.899 43.478 0.00 0.00 37.89 3.18
2676 4821 4.100529 CACATGCGAGATTTGAATCAACC 58.899 43.478 0.00 0.00 37.89 3.77
2677 4822 3.129287 ACATGCGAGATTTGAATCAACCC 59.871 43.478 0.00 0.00 37.89 4.11
2678 4823 2.789213 TGCGAGATTTGAATCAACCCA 58.211 42.857 0.00 0.00 37.89 4.51
2679 4824 3.153130 TGCGAGATTTGAATCAACCCAA 58.847 40.909 0.00 0.00 37.89 4.12
2680 4825 3.057596 TGCGAGATTTGAATCAACCCAAC 60.058 43.478 0.00 0.00 37.89 3.77
2681 4826 3.673323 GCGAGATTTGAATCAACCCAACC 60.673 47.826 0.00 0.00 37.89 3.77
2682 4827 3.758554 CGAGATTTGAATCAACCCAACCT 59.241 43.478 0.00 0.00 37.89 3.50
2683 4828 4.142600 CGAGATTTGAATCAACCCAACCTC 60.143 45.833 0.00 0.00 37.89 3.85
2684 4829 4.089361 AGATTTGAATCAACCCAACCTCC 58.911 43.478 0.00 0.00 37.89 4.30
2685 4830 3.320610 TTTGAATCAACCCAACCTCCA 57.679 42.857 0.00 0.00 0.00 3.86
2686 4831 3.320610 TTGAATCAACCCAACCTCCAA 57.679 42.857 0.00 0.00 0.00 3.53
2687 4832 2.593026 TGAATCAACCCAACCTCCAAC 58.407 47.619 0.00 0.00 0.00 3.77
2688 4833 1.539827 GAATCAACCCAACCTCCAACG 59.460 52.381 0.00 0.00 0.00 4.10
2689 4834 0.893727 ATCAACCCAACCTCCAACGC 60.894 55.000 0.00 0.00 0.00 4.84
2690 4835 1.826054 CAACCCAACCTCCAACGCA 60.826 57.895 0.00 0.00 0.00 5.24
2691 4836 1.152830 AACCCAACCTCCAACGCAT 59.847 52.632 0.00 0.00 0.00 4.73
2692 4837 0.893727 AACCCAACCTCCAACGCATC 60.894 55.000 0.00 0.00 0.00 3.91
2693 4838 1.303236 CCCAACCTCCAACGCATCA 60.303 57.895 0.00 0.00 0.00 3.07
2694 4839 0.680921 CCCAACCTCCAACGCATCAT 60.681 55.000 0.00 0.00 0.00 2.45
2695 4840 0.734889 CCAACCTCCAACGCATCATC 59.265 55.000 0.00 0.00 0.00 2.92
2696 4841 0.374758 CAACCTCCAACGCATCATCG 59.625 55.000 0.00 0.00 0.00 3.84
2697 4842 0.249120 AACCTCCAACGCATCATCGA 59.751 50.000 0.00 0.00 0.00 3.59
2698 4843 0.460284 ACCTCCAACGCATCATCGAC 60.460 55.000 0.00 0.00 0.00 4.20
2699 4844 1.482621 CCTCCAACGCATCATCGACG 61.483 60.000 0.00 0.00 0.00 5.12
2700 4845 0.525455 CTCCAACGCATCATCGACGA 60.525 55.000 0.00 0.00 0.00 4.20
2701 4846 0.800683 TCCAACGCATCATCGACGAC 60.801 55.000 0.00 0.00 0.00 4.34
2702 4847 1.266943 CAACGCATCATCGACGACG 59.733 57.895 0.00 0.00 41.26 5.12
2703 4848 1.872234 AACGCATCATCGACGACGG 60.872 57.895 7.55 0.00 40.21 4.79
2704 4849 3.024609 CGCATCATCGACGACGGG 61.025 66.667 7.55 0.50 40.21 5.28
2705 4850 3.330853 GCATCATCGACGACGGGC 61.331 66.667 7.55 0.00 40.21 6.13
2706 4851 2.104132 CATCATCGACGACGGGCA 59.896 61.111 7.55 0.00 40.21 5.36
2707 4852 2.104331 ATCATCGACGACGGGCAC 59.896 61.111 7.55 0.00 40.21 5.01
2721 4866 4.251246 GCACCCGGCCATTAATGA 57.749 55.556 17.23 0.00 36.11 2.57
2722 4867 1.733526 GCACCCGGCCATTAATGAC 59.266 57.895 17.23 4.98 36.11 3.06
2723 4868 1.034838 GCACCCGGCCATTAATGACA 61.035 55.000 17.23 0.00 36.11 3.58
2724 4869 0.738389 CACCCGGCCATTAATGACAC 59.262 55.000 17.23 5.86 0.00 3.67
2725 4870 0.746563 ACCCGGCCATTAATGACACG 60.747 55.000 17.23 15.89 0.00 4.49
2726 4871 0.462937 CCCGGCCATTAATGACACGA 60.463 55.000 17.23 0.00 0.00 4.35
2727 4872 0.655733 CCGGCCATTAATGACACGAC 59.344 55.000 17.23 1.12 0.00 4.34
2728 4873 0.655733 CGGCCATTAATGACACGACC 59.344 55.000 17.23 7.15 0.00 4.79
2729 4874 0.655733 GGCCATTAATGACACGACCG 59.344 55.000 17.23 0.00 0.00 4.79
2730 4875 0.027586 GCCATTAATGACACGACCGC 59.972 55.000 17.23 5.26 0.00 5.68
2731 4876 1.651987 CCATTAATGACACGACCGCT 58.348 50.000 17.23 0.00 0.00 5.52
2732 4877 1.593006 CCATTAATGACACGACCGCTC 59.407 52.381 17.23 0.00 0.00 5.03
2733 4878 1.593006 CATTAATGACACGACCGCTCC 59.407 52.381 10.04 0.00 0.00 4.70
2734 4879 0.604073 TTAATGACACGACCGCTCCA 59.396 50.000 0.00 0.00 0.00 3.86
2735 4880 0.821517 TAATGACACGACCGCTCCAT 59.178 50.000 0.00 0.00 0.00 3.41
2736 4881 0.460284 AATGACACGACCGCTCCATC 60.460 55.000 0.00 0.00 0.00 3.51
2737 4882 2.579787 GACACGACCGCTCCATCG 60.580 66.667 0.00 0.00 43.97 3.84
2754 4899 4.191015 GGATTCCCGTGGGAGCCC 62.191 72.222 7.85 9.51 46.06 5.19
2755 4900 4.547367 GATTCCCGTGGGAGCCCG 62.547 72.222 7.85 0.00 46.06 6.13
2757 4902 3.988050 ATTCCCGTGGGAGCCCGTA 62.988 63.158 7.85 0.00 46.06 4.02
2758 4903 4.700448 TCCCGTGGGAGCCCGTAA 62.700 66.667 2.72 0.00 39.76 3.18
2759 4904 4.157120 CCCGTGGGAGCCCGTAAG 62.157 72.222 0.00 0.00 39.42 2.34
2760 4905 3.072468 CCGTGGGAGCCCGTAAGA 61.072 66.667 0.29 0.00 43.02 2.10
2761 4906 2.432300 CCGTGGGAGCCCGTAAGAT 61.432 63.158 0.29 0.00 43.02 2.40
2762 4907 1.227263 CGTGGGAGCCCGTAAGATG 60.227 63.158 0.29 0.00 43.02 2.90
2763 4908 1.146263 GTGGGAGCCCGTAAGATGG 59.854 63.158 0.29 0.00 43.02 3.51
2764 4909 1.306654 TGGGAGCCCGTAAGATGGT 60.307 57.895 0.29 0.00 43.02 3.55
2765 4910 1.146263 GGGAGCCCGTAAGATGGTG 59.854 63.158 0.00 0.00 43.02 4.17
2766 4911 1.523938 GGAGCCCGTAAGATGGTGC 60.524 63.158 0.00 0.00 43.02 5.01
2767 4912 1.523938 GAGCCCGTAAGATGGTGCC 60.524 63.158 0.00 0.00 43.02 5.01
2768 4913 2.252072 GAGCCCGTAAGATGGTGCCA 62.252 60.000 0.00 0.00 43.02 4.92
2769 4914 1.152963 GCCCGTAAGATGGTGCCAT 60.153 57.895 2.95 2.95 43.02 4.40
2770 4915 1.447317 GCCCGTAAGATGGTGCCATG 61.447 60.000 8.64 0.00 43.02 3.66
2771 4916 0.107214 CCCGTAAGATGGTGCCATGT 60.107 55.000 8.64 1.25 43.02 3.21
2772 4917 1.016627 CCGTAAGATGGTGCCATGTG 58.983 55.000 8.64 0.00 43.02 3.21
2773 4918 1.016627 CGTAAGATGGTGCCATGTGG 58.983 55.000 8.64 0.00 43.02 4.17
2786 4931 1.954382 CCATGTGGCATCATCTCTTGG 59.046 52.381 0.00 0.00 0.00 3.61
2787 4932 1.337071 CATGTGGCATCATCTCTTGGC 59.663 52.381 0.00 0.00 38.77 4.52
2788 4933 0.622136 TGTGGCATCATCTCTTGGCT 59.378 50.000 0.00 0.00 39.04 4.75
2789 4934 1.005097 TGTGGCATCATCTCTTGGCTT 59.995 47.619 0.00 0.00 39.04 4.35
2790 4935 1.404391 GTGGCATCATCTCTTGGCTTG 59.596 52.381 0.00 0.00 39.04 4.01
2791 4936 0.384669 GGCATCATCTCTTGGCTTGC 59.615 55.000 0.00 0.00 35.67 4.01
2792 4937 1.100510 GCATCATCTCTTGGCTTGCA 58.899 50.000 0.00 0.00 0.00 4.08
2793 4938 1.202268 GCATCATCTCTTGGCTTGCAC 60.202 52.381 0.00 0.00 0.00 4.57
2794 4939 1.063616 CATCATCTCTTGGCTTGCACG 59.936 52.381 0.00 0.00 0.00 5.34
2795 4940 0.035317 TCATCTCTTGGCTTGCACGT 59.965 50.000 0.00 0.00 0.00 4.49
2796 4941 0.167470 CATCTCTTGGCTTGCACGTG 59.833 55.000 12.28 12.28 0.00 4.49
2797 4942 0.035317 ATCTCTTGGCTTGCACGTGA 59.965 50.000 22.23 1.04 0.00 4.35
2798 4943 0.601046 TCTCTTGGCTTGCACGTGAG 60.601 55.000 22.23 10.06 0.00 3.51
2799 4944 2.180131 CTCTTGGCTTGCACGTGAGC 62.180 60.000 22.23 19.92 38.17 4.26
2800 4945 2.515757 TTGGCTTGCACGTGAGCA 60.516 55.556 25.19 13.31 43.99 4.26
2801 4946 2.453773 CTTGGCTTGCACGTGAGCAG 62.454 60.000 25.19 15.61 46.54 4.24
2802 4947 2.666190 GGCTTGCACGTGAGCAGA 60.666 61.111 25.19 6.96 46.54 4.26
2803 4948 2.553268 GCTTGCACGTGAGCAGAC 59.447 61.111 22.23 3.11 46.54 3.51
2804 4949 2.959357 GCTTGCACGTGAGCAGACC 61.959 63.158 22.23 0.00 46.54 3.85
2805 4950 2.661537 TTGCACGTGAGCAGACCG 60.662 61.111 22.23 0.00 46.54 4.79
2806 4951 3.145422 TTGCACGTGAGCAGACCGA 62.145 57.895 22.23 0.00 46.54 4.69
2807 4952 2.807045 GCACGTGAGCAGACCGAG 60.807 66.667 22.23 0.00 0.00 4.63
2808 4953 2.126307 CACGTGAGCAGACCGAGG 60.126 66.667 10.90 0.00 0.00 4.63
2809 4954 2.282251 ACGTGAGCAGACCGAGGA 60.282 61.111 0.00 0.00 0.00 3.71
2810 4955 2.336478 ACGTGAGCAGACCGAGGAG 61.336 63.158 0.00 0.00 0.00 3.69
2811 4956 2.183046 GTGAGCAGACCGAGGAGC 59.817 66.667 0.00 0.00 0.00 4.70
2812 4957 3.071206 TGAGCAGACCGAGGAGCC 61.071 66.667 0.00 0.00 0.00 4.70
2813 4958 4.200283 GAGCAGACCGAGGAGCCG 62.200 72.222 0.00 0.00 0.00 5.52
2815 4960 4.070552 GCAGACCGAGGAGCCGTT 62.071 66.667 0.00 0.00 0.00 4.44
2816 4961 2.657237 CAGACCGAGGAGCCGTTT 59.343 61.111 0.00 0.00 0.00 3.60
2817 4962 1.738099 CAGACCGAGGAGCCGTTTG 60.738 63.158 0.00 0.00 0.00 2.93
2818 4963 1.906824 AGACCGAGGAGCCGTTTGA 60.907 57.895 0.00 0.00 0.00 2.69
2819 4964 1.446272 GACCGAGGAGCCGTTTGAG 60.446 63.158 0.00 0.00 0.00 3.02
2820 4965 2.815647 CCGAGGAGCCGTTTGAGC 60.816 66.667 0.00 0.00 0.00 4.26
2821 4966 2.048222 CGAGGAGCCGTTTGAGCA 60.048 61.111 0.00 0.00 0.00 4.26
2822 4967 2.097038 CGAGGAGCCGTTTGAGCAG 61.097 63.158 0.00 0.00 0.00 4.24
2823 4968 1.004440 GAGGAGCCGTTTGAGCAGT 60.004 57.895 0.00 0.00 0.00 4.40
2824 4969 1.004440 AGGAGCCGTTTGAGCAGTC 60.004 57.895 0.00 0.00 0.00 3.51
2825 4970 2.383527 GGAGCCGTTTGAGCAGTCG 61.384 63.158 0.00 0.00 0.00 4.18
2826 4971 2.357517 AGCCGTTTGAGCAGTCGG 60.358 61.111 9.77 9.77 44.86 4.79
2827 4972 3.423154 GCCGTTTGAGCAGTCGGG 61.423 66.667 13.89 0.00 42.71 5.14
2828 4973 2.342279 CCGTTTGAGCAGTCGGGA 59.658 61.111 0.00 0.00 39.41 5.14
2829 4974 1.738099 CCGTTTGAGCAGTCGGGAG 60.738 63.158 0.00 0.00 39.41 4.30
2830 4975 2.383527 CGTTTGAGCAGTCGGGAGC 61.384 63.158 0.00 0.00 0.00 4.70
2831 4976 2.048222 TTTGAGCAGTCGGGAGCG 60.048 61.111 0.00 0.00 35.48 5.03
2832 4977 4.742201 TTGAGCAGTCGGGAGCGC 62.742 66.667 0.00 0.00 35.48 5.92
2842 4987 2.742372 GGGAGCGCGTGTGAACAT 60.742 61.111 8.43 0.00 0.00 2.71
2843 4988 2.476051 GGAGCGCGTGTGAACATG 59.524 61.111 8.43 0.00 36.01 3.21
2844 4989 2.027073 GGAGCGCGTGTGAACATGA 61.027 57.895 8.43 0.00 34.90 3.07
2845 4990 1.130613 GAGCGCGTGTGAACATGAC 59.869 57.895 8.43 0.00 34.90 3.06
2846 4991 2.202046 GCGCGTGTGAACATGACG 60.202 61.111 8.43 10.08 36.35 4.35
2847 4992 2.938823 GCGCGTGTGAACATGACGT 61.939 57.895 8.43 0.00 35.98 4.34
2848 4993 1.154854 CGCGTGTGAACATGACGTG 60.155 57.895 0.00 0.75 37.28 4.49
2849 4994 1.544777 CGCGTGTGAACATGACGTGA 61.545 55.000 10.85 0.00 44.34 4.35
2850 4995 0.111266 GCGTGTGAACATGACGTGAC 60.111 55.000 0.00 0.00 35.52 3.67
2851 4996 1.204792 CGTGTGAACATGACGTGACA 58.795 50.000 0.00 0.00 34.90 3.58
2852 4997 1.590698 CGTGTGAACATGACGTGACAA 59.409 47.619 0.00 0.00 34.90 3.18
2853 4998 2.596575 CGTGTGAACATGACGTGACAAC 60.597 50.000 0.00 0.00 34.90 3.32
2854 4999 2.350192 GTGTGAACATGACGTGACAACA 59.650 45.455 0.00 0.00 0.00 3.33
2855 5000 3.002246 GTGTGAACATGACGTGACAACAT 59.998 43.478 0.00 0.00 0.00 2.71
2856 5001 3.625313 TGTGAACATGACGTGACAACATT 59.375 39.130 0.00 0.00 0.00 2.71
2857 5002 4.095632 TGTGAACATGACGTGACAACATTT 59.904 37.500 0.00 0.00 0.00 2.32
2858 5003 5.034152 GTGAACATGACGTGACAACATTTT 58.966 37.500 0.00 0.00 0.00 1.82
2859 5004 5.171337 GTGAACATGACGTGACAACATTTTC 59.829 40.000 0.00 0.00 33.86 2.29
2860 5005 4.891627 ACATGACGTGACAACATTTTCA 57.108 36.364 0.00 0.00 0.00 2.69
2861 5006 5.437289 ACATGACGTGACAACATTTTCAT 57.563 34.783 0.00 0.00 0.00 2.57
2862 5007 5.830912 ACATGACGTGACAACATTTTCATT 58.169 33.333 0.00 0.00 0.00 2.57
2863 5008 5.686841 ACATGACGTGACAACATTTTCATTG 59.313 36.000 0.00 0.00 0.00 2.82
2864 5009 4.041049 TGACGTGACAACATTTTCATTGC 58.959 39.130 0.00 0.00 0.00 3.56
2865 5010 3.042189 ACGTGACAACATTTTCATTGCG 58.958 40.909 0.00 0.00 0.00 4.85
2866 5011 3.242903 ACGTGACAACATTTTCATTGCGA 60.243 39.130 0.00 0.00 0.00 5.10
2867 5012 3.358700 CGTGACAACATTTTCATTGCGAG 59.641 43.478 0.00 0.00 0.00 5.03
2868 5013 4.536065 GTGACAACATTTTCATTGCGAGA 58.464 39.130 0.00 0.00 0.00 4.04
2869 5014 5.156355 GTGACAACATTTTCATTGCGAGAT 58.844 37.500 0.00 0.00 0.00 2.75
2870 5015 5.060077 GTGACAACATTTTCATTGCGAGATG 59.940 40.000 0.00 0.00 0.00 2.90
2871 5016 5.048852 TGACAACATTTTCATTGCGAGATGA 60.049 36.000 0.00 0.00 34.37 2.92
2872 5017 5.396484 ACAACATTTTCATTGCGAGATGAG 58.604 37.500 0.00 0.00 37.35 2.90
2873 5018 4.025015 ACATTTTCATTGCGAGATGAGC 57.975 40.909 0.00 0.00 37.35 4.26
2874 5019 3.181493 ACATTTTCATTGCGAGATGAGCC 60.181 43.478 0.00 0.00 37.35 4.70
2875 5020 1.382522 TTTCATTGCGAGATGAGCCC 58.617 50.000 0.00 0.00 37.35 5.19
2876 5021 0.464373 TTCATTGCGAGATGAGCCCC 60.464 55.000 0.00 0.00 37.35 5.80
2877 5022 1.147824 CATTGCGAGATGAGCCCCT 59.852 57.895 0.00 0.00 0.00 4.79
2878 5023 0.465097 CATTGCGAGATGAGCCCCTT 60.465 55.000 0.00 0.00 0.00 3.95
2879 5024 0.179034 ATTGCGAGATGAGCCCCTTC 60.179 55.000 0.00 0.00 0.00 3.46
2880 5025 1.552799 TTGCGAGATGAGCCCCTTCA 61.553 55.000 0.00 0.00 0.00 3.02
2881 5026 1.522580 GCGAGATGAGCCCCTTCAC 60.523 63.158 0.00 0.00 0.00 3.18
2882 5027 1.144936 CGAGATGAGCCCCTTCACC 59.855 63.158 0.00 0.00 0.00 4.02
2883 5028 1.617018 CGAGATGAGCCCCTTCACCA 61.617 60.000 0.00 0.00 0.00 4.17
2884 5029 0.107459 GAGATGAGCCCCTTCACCAC 60.107 60.000 0.00 0.00 0.00 4.16
2885 5030 0.548682 AGATGAGCCCCTTCACCACT 60.549 55.000 0.00 0.00 0.00 4.00
2886 5031 0.107459 GATGAGCCCCTTCACCACTC 60.107 60.000 0.00 0.00 0.00 3.51
2887 5032 0.548682 ATGAGCCCCTTCACCACTCT 60.549 55.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.419282 AGGCCTCCAGATTCAAAATTCAA 58.581 39.130 0.00 0.00 0.00 2.69
2 3 4.645762 GAGGCCTCCAGATTCAAAATTC 57.354 45.455 23.19 0.00 0.00 2.17
16 17 2.899505 GAGCTCACTGGAGGCCTC 59.100 66.667 25.59 25.59 41.67 4.70
17 18 3.073735 CGAGCTCACTGGAGGCCT 61.074 66.667 15.40 3.86 41.67 5.19
18 19 4.154347 CCGAGCTCACTGGAGGCC 62.154 72.222 15.40 0.00 41.67 5.19
19 20 3.363844 GACCGAGCTCACTGGAGGC 62.364 68.421 15.40 0.00 41.67 4.70
20 21 1.979155 TGACCGAGCTCACTGGAGG 60.979 63.158 15.40 8.04 41.67 4.30
21 22 1.214062 GTGACCGAGCTCACTGGAG 59.786 63.158 15.40 0.00 44.33 3.86
22 23 2.276116 GGTGACCGAGCTCACTGGA 61.276 63.158 15.40 0.00 40.50 3.86
23 24 2.099652 TTGGTGACCGAGCTCACTGG 62.100 60.000 15.40 9.60 40.50 4.00
24 25 0.036952 ATTGGTGACCGAGCTCACTG 60.037 55.000 15.40 3.86 40.50 3.66
25 26 0.036952 CATTGGTGACCGAGCTCACT 60.037 55.000 15.40 0.00 40.50 3.41
26 27 1.021390 CCATTGGTGACCGAGCTCAC 61.021 60.000 15.40 4.81 40.02 3.51
27 28 1.296392 CCATTGGTGACCGAGCTCA 59.704 57.895 15.40 0.00 0.00 4.26
28 29 2.109126 GCCATTGGTGACCGAGCTC 61.109 63.158 2.73 2.73 0.00 4.09
29 30 2.045926 GCCATTGGTGACCGAGCT 60.046 61.111 4.26 0.00 0.00 4.09
30 31 2.359850 TGCCATTGGTGACCGAGC 60.360 61.111 4.26 0.00 0.00 5.03
31 32 0.606401 AACTGCCATTGGTGACCGAG 60.606 55.000 4.26 0.00 0.00 4.63
32 33 0.179004 AAACTGCCATTGGTGACCGA 60.179 50.000 4.26 0.00 0.00 4.69
33 34 0.240945 GAAACTGCCATTGGTGACCG 59.759 55.000 4.26 0.00 0.00 4.79
34 35 0.603065 GGAAACTGCCATTGGTGACC 59.397 55.000 4.26 0.00 0.00 4.02
35 36 0.240945 CGGAAACTGCCATTGGTGAC 59.759 55.000 4.26 0.00 0.00 3.67
36 37 0.893270 CCGGAAACTGCCATTGGTGA 60.893 55.000 0.00 0.00 0.00 4.02
37 38 1.178534 ACCGGAAACTGCCATTGGTG 61.179 55.000 9.46 0.56 0.00 4.17
38 39 0.469144 AACCGGAAACTGCCATTGGT 60.469 50.000 9.46 0.00 0.00 3.67
39 40 0.038343 CAACCGGAAACTGCCATTGG 60.038 55.000 9.46 0.00 0.00 3.16
40 41 0.673437 ACAACCGGAAACTGCCATTG 59.327 50.000 9.46 0.39 32.60 2.82
41 42 0.958822 GACAACCGGAAACTGCCATT 59.041 50.000 9.46 0.00 0.00 3.16
42 43 0.179004 TGACAACCGGAAACTGCCAT 60.179 50.000 9.46 0.00 0.00 4.40
43 44 0.817634 CTGACAACCGGAAACTGCCA 60.818 55.000 9.46 0.00 0.00 4.92
44 45 1.949257 CTGACAACCGGAAACTGCC 59.051 57.895 9.46 0.00 0.00 4.85
45 46 1.282875 GCTGACAACCGGAAACTGC 59.717 57.895 9.46 8.51 0.00 4.40
46 47 1.515521 GGGCTGACAACCGGAAACTG 61.516 60.000 9.46 1.84 0.00 3.16
47 48 1.228154 GGGCTGACAACCGGAAACT 60.228 57.895 9.46 0.00 0.00 2.66
48 49 2.613506 CGGGCTGACAACCGGAAAC 61.614 63.158 9.46 0.00 46.08 2.78
49 50 2.281208 CGGGCTGACAACCGGAAA 60.281 61.111 9.46 0.00 46.08 3.13
54 55 1.070134 TGATATAGCGGGCTGACAACC 59.930 52.381 2.86 0.00 0.00 3.77
55 56 2.526304 TGATATAGCGGGCTGACAAC 57.474 50.000 2.86 0.00 0.00 3.32
56 57 2.028112 GGATGATATAGCGGGCTGACAA 60.028 50.000 2.86 0.00 0.00 3.18
57 58 1.550524 GGATGATATAGCGGGCTGACA 59.449 52.381 2.86 0.00 0.00 3.58
58 59 1.134670 GGGATGATATAGCGGGCTGAC 60.135 57.143 2.86 0.00 0.00 3.51
63 64 2.900546 GGATAGGGGATGATATAGCGGG 59.099 54.545 0.00 0.00 0.00 6.13
89 90 3.748083 AGCACATACATAGAGGGCAATG 58.252 45.455 0.00 0.00 0.00 2.82
92 93 5.567037 AATAAGCACATACATAGAGGGCA 57.433 39.130 0.00 0.00 0.00 5.36
138 139 2.620251 TAAGGCATTCATGGAGGTCG 57.380 50.000 0.00 0.00 0.00 4.79
141 142 3.825014 CCAGATTAAGGCATTCATGGAGG 59.175 47.826 0.00 0.00 0.00 4.30
217 218 7.381408 CACGTACACCATGTTTCTAGGTATATG 59.619 40.741 0.00 0.00 33.49 1.78
229 230 2.489971 CTTCCACACGTACACCATGTT 58.510 47.619 0.00 0.00 0.00 2.71
234 235 1.957668 AAACCTTCCACACGTACACC 58.042 50.000 0.00 0.00 0.00 4.16
240 241 2.222445 CGACCTAAAAACCTTCCACACG 59.778 50.000 0.00 0.00 0.00 4.49
241 242 3.469739 TCGACCTAAAAACCTTCCACAC 58.530 45.455 0.00 0.00 0.00 3.82
245 246 4.577693 ACTGTTTCGACCTAAAAACCTTCC 59.422 41.667 0.00 0.00 35.07 3.46
246 247 5.746307 ACTGTTTCGACCTAAAAACCTTC 57.254 39.130 0.00 0.00 35.07 3.46
249 250 6.784176 TGTTAACTGTTTCGACCTAAAAACC 58.216 36.000 7.22 0.00 35.07 3.27
250 251 8.124199 TCATGTTAACTGTTTCGACCTAAAAAC 58.876 33.333 7.22 0.00 36.21 2.43
251 252 8.211116 TCATGTTAACTGTTTCGACCTAAAAA 57.789 30.769 7.22 0.00 0.00 1.94
252 253 7.711772 TCTCATGTTAACTGTTTCGACCTAAAA 59.288 33.333 7.22 0.00 0.00 1.52
260 261 5.062308 GGTAGCTCTCATGTTAACTGTTTCG 59.938 44.000 7.22 0.00 0.00 3.46
265 266 6.801539 TTTTGGTAGCTCTCATGTTAACTG 57.198 37.500 7.22 3.19 0.00 3.16
299 300 2.743938 ACATATCGTAAAGAGCCGCAG 58.256 47.619 0.00 0.00 0.00 5.18
312 313 9.817365 GATTTTGAGGATGAACATTACATATCG 57.183 33.333 0.00 0.00 0.00 2.92
353 568 9.860898 ATAAAATACCTTGAATTTCAGAGTTGC 57.139 29.630 8.22 0.00 0.00 4.17
367 582 9.434420 TGCAAAATTTCAGGATAAAATACCTTG 57.566 29.630 0.00 0.00 33.91 3.61
368 583 9.435688 GTGCAAAATTTCAGGATAAAATACCTT 57.564 29.630 0.00 0.00 33.91 3.50
374 589 8.674263 AATGTGTGCAAAATTTCAGGATAAAA 57.326 26.923 0.00 0.00 0.00 1.52
420 635 7.437862 TGTTATTCCACATTCAAACTTTTCAGC 59.562 33.333 0.00 0.00 0.00 4.26
438 653 4.553323 ACTCGTATACCGCATGTTATTCC 58.447 43.478 0.00 0.00 36.19 3.01
450 665 3.733077 CGTCCAAGTCCAACTCGTATACC 60.733 52.174 0.00 0.00 0.00 2.73
451 666 3.432782 CGTCCAAGTCCAACTCGTATAC 58.567 50.000 0.00 0.00 0.00 1.47
452 667 2.424601 CCGTCCAAGTCCAACTCGTATA 59.575 50.000 0.00 0.00 0.00 1.47
453 668 1.203994 CCGTCCAAGTCCAACTCGTAT 59.796 52.381 0.00 0.00 0.00 3.06
454 669 0.599558 CCGTCCAAGTCCAACTCGTA 59.400 55.000 0.00 0.00 0.00 3.43
455 670 1.111116 TCCGTCCAAGTCCAACTCGT 61.111 55.000 0.00 0.00 0.00 4.18
456 671 0.388649 CTCCGTCCAAGTCCAACTCG 60.389 60.000 0.00 0.00 0.00 4.18
457 672 0.680061 ACTCCGTCCAAGTCCAACTC 59.320 55.000 0.00 0.00 0.00 3.01
458 673 0.393077 CACTCCGTCCAAGTCCAACT 59.607 55.000 0.00 0.00 0.00 3.16
459 674 0.602905 CCACTCCGTCCAAGTCCAAC 60.603 60.000 0.00 0.00 0.00 3.77
460 675 1.752198 CCACTCCGTCCAAGTCCAA 59.248 57.895 0.00 0.00 0.00 3.53
461 676 2.879233 GCCACTCCGTCCAAGTCCA 61.879 63.158 0.00 0.00 0.00 4.02
462 677 1.255667 TAGCCACTCCGTCCAAGTCC 61.256 60.000 0.00 0.00 0.00 3.85
463 678 0.173708 CTAGCCACTCCGTCCAAGTC 59.826 60.000 0.00 0.00 0.00 3.01
464 679 0.542232 ACTAGCCACTCCGTCCAAGT 60.542 55.000 0.00 0.00 0.00 3.16
465 680 1.405821 CTACTAGCCACTCCGTCCAAG 59.594 57.143 0.00 0.00 0.00 3.61
466 681 1.471119 CTACTAGCCACTCCGTCCAA 58.529 55.000 0.00 0.00 0.00 3.53
467 682 0.395311 CCTACTAGCCACTCCGTCCA 60.395 60.000 0.00 0.00 0.00 4.02
468 683 1.108132 CCCTACTAGCCACTCCGTCC 61.108 65.000 0.00 0.00 0.00 4.79
469 684 0.395448 ACCCTACTAGCCACTCCGTC 60.395 60.000 0.00 0.00 0.00 4.79
470 685 0.683504 CACCCTACTAGCCACTCCGT 60.684 60.000 0.00 0.00 0.00 4.69
471 686 2.017559 GCACCCTACTAGCCACTCCG 62.018 65.000 0.00 0.00 0.00 4.63
472 687 1.823976 GCACCCTACTAGCCACTCC 59.176 63.158 0.00 0.00 0.00 3.85
473 688 1.321074 ACGCACCCTACTAGCCACTC 61.321 60.000 0.00 0.00 0.00 3.51
474 689 1.305046 ACGCACCCTACTAGCCACT 60.305 57.895 0.00 0.00 0.00 4.00
475 690 1.153628 CACGCACCCTACTAGCCAC 60.154 63.158 0.00 0.00 0.00 5.01
476 691 3.014085 GCACGCACCCTACTAGCCA 62.014 63.158 0.00 0.00 0.00 4.75
477 692 2.202892 GCACGCACCCTACTAGCC 60.203 66.667 0.00 0.00 0.00 3.93
478 693 1.810030 GTGCACGCACCCTACTAGC 60.810 63.158 11.13 0.00 40.79 3.42
479 694 4.496670 GTGCACGCACCCTACTAG 57.503 61.111 11.13 0.00 40.79 2.57
487 702 1.237285 ATTCCAAGGAGTGCACGCAC 61.237 55.000 22.36 14.28 46.50 5.34
488 703 0.323302 TATTCCAAGGAGTGCACGCA 59.677 50.000 22.36 0.35 0.00 5.24
489 704 1.130561 GTTATTCCAAGGAGTGCACGC 59.869 52.381 12.67 12.67 0.00 5.34
490 705 2.422597 TGTTATTCCAAGGAGTGCACG 58.577 47.619 12.01 0.00 0.00 5.34
491 706 4.009675 TCATGTTATTCCAAGGAGTGCAC 58.990 43.478 9.40 9.40 0.00 4.57
492 707 4.264253 CTCATGTTATTCCAAGGAGTGCA 58.736 43.478 0.00 0.00 0.00 4.57
493 708 3.629398 CCTCATGTTATTCCAAGGAGTGC 59.371 47.826 0.00 0.00 0.00 4.40
494 709 4.848357 ACCTCATGTTATTCCAAGGAGTG 58.152 43.478 0.17 0.00 0.00 3.51
495 710 6.409695 CCATACCTCATGTTATTCCAAGGAGT 60.410 42.308 0.17 0.00 32.21 3.85
496 711 6.000219 CCATACCTCATGTTATTCCAAGGAG 59.000 44.000 0.17 0.00 32.21 3.69
497 712 5.690097 GCCATACCTCATGTTATTCCAAGGA 60.690 44.000 0.17 0.00 32.21 3.36
498 713 4.520492 GCCATACCTCATGTTATTCCAAGG 59.480 45.833 0.00 0.00 32.21 3.61
499 714 5.132502 TGCCATACCTCATGTTATTCCAAG 58.867 41.667 0.00 0.00 32.21 3.61
500 715 5.122707 TGCCATACCTCATGTTATTCCAA 57.877 39.130 0.00 0.00 32.21 3.53
501 716 4.787135 TGCCATACCTCATGTTATTCCA 57.213 40.909 0.00 0.00 32.21 3.53
502 717 6.321181 TCTTTTGCCATACCTCATGTTATTCC 59.679 38.462 0.00 0.00 32.21 3.01
503 718 7.333528 TCTTTTGCCATACCTCATGTTATTC 57.666 36.000 0.00 0.00 32.21 1.75
504 719 7.560991 TCATCTTTTGCCATACCTCATGTTATT 59.439 33.333 0.00 0.00 32.21 1.40
505 720 7.013655 GTCATCTTTTGCCATACCTCATGTTAT 59.986 37.037 0.00 0.00 32.21 1.89
506 721 6.318648 GTCATCTTTTGCCATACCTCATGTTA 59.681 38.462 0.00 0.00 32.21 2.41
507 722 5.126061 GTCATCTTTTGCCATACCTCATGTT 59.874 40.000 0.00 0.00 32.21 2.71
513 728 3.627395 TCGTCATCTTTTGCCATACCT 57.373 42.857 0.00 0.00 0.00 3.08
607 823 2.635915 ACGGTTTGGTTGGAGTGATAGA 59.364 45.455 0.00 0.00 0.00 1.98
609 825 2.551287 CCACGGTTTGGTTGGAGTGATA 60.551 50.000 0.00 0.00 41.10 2.15
634 860 0.512952 CTTTCGGTGGACTTTGCGAG 59.487 55.000 0.00 0.00 0.00 5.03
840 1352 3.053245 TGGTGATGGGTTTTATAGGTGGG 60.053 47.826 0.00 0.00 0.00 4.61
906 1430 1.748493 CTCTAGCCTCTTCTTGCGTCT 59.252 52.381 0.00 0.00 0.00 4.18
909 1433 2.020720 TCTCTCTAGCCTCTTCTTGCG 58.979 52.381 0.00 0.00 0.00 4.85
920 1444 0.744281 GGACTGTGGCTCTCTCTAGC 59.256 60.000 0.00 0.00 41.99 3.42
921 1445 1.748493 GTGGACTGTGGCTCTCTCTAG 59.252 57.143 0.00 0.00 0.00 2.43
922 1446 1.075536 TGTGGACTGTGGCTCTCTCTA 59.924 52.381 0.00 0.00 0.00 2.43
923 1447 0.178950 TGTGGACTGTGGCTCTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
924 1448 0.246086 CTGTGGACTGTGGCTCTCTC 59.754 60.000 0.00 0.00 0.00 3.20
925 1449 1.825281 GCTGTGGACTGTGGCTCTCT 61.825 60.000 0.00 0.00 0.00 3.10
1495 2108 1.339535 GGAGAAGCTCTTGGACTTGGG 60.340 57.143 0.00 0.00 0.00 4.12
1631 2289 1.596895 GCCCTCGGACGACTCTTCTT 61.597 60.000 0.00 0.00 0.00 2.52
1907 2586 1.192146 TCAGCTAGTTCAAGGGCGGT 61.192 55.000 0.00 0.00 0.00 5.68
1911 2590 3.259374 TGACTTCTCAGCTAGTTCAAGGG 59.741 47.826 0.00 0.00 0.00 3.95
1912 2591 4.527509 TGACTTCTCAGCTAGTTCAAGG 57.472 45.455 0.00 0.00 0.00 3.61
1972 2675 7.621796 TCTCTACTCTAAAATGGGGAAAAGAC 58.378 38.462 0.00 0.00 0.00 3.01
2002 2709 9.256228 AGATGAACAAGGTACAAGATTCTACTA 57.744 33.333 0.00 0.00 0.00 1.82
2006 2713 5.645497 GCAGATGAACAAGGTACAAGATTCT 59.355 40.000 0.00 0.00 0.00 2.40
2067 2777 9.304335 TGTCATTCCTATGAGTAATATACCGAA 57.696 33.333 0.00 0.00 41.33 4.30
2068 2778 8.873186 TGTCATTCCTATGAGTAATATACCGA 57.127 34.615 0.00 0.00 41.33 4.69
2083 2816 9.314133 AGTACATCATAGCTATTGTCATTCCTA 57.686 33.333 13.16 0.00 0.00 2.94
2094 2827 9.703892 GACTTGAAATCAGTACATCATAGCTAT 57.296 33.333 0.00 0.00 0.00 2.97
2110 2843 5.234543 GCCGTAGACCTAATGACTTGAAATC 59.765 44.000 0.00 0.00 0.00 2.17
2111 2844 5.104900 AGCCGTAGACCTAATGACTTGAAAT 60.105 40.000 0.00 0.00 0.00 2.17
2112 2845 4.222145 AGCCGTAGACCTAATGACTTGAAA 59.778 41.667 0.00 0.00 0.00 2.69
2114 2847 3.130516 CAGCCGTAGACCTAATGACTTGA 59.869 47.826 0.00 0.00 0.00 3.02
2116 2849 2.159085 GCAGCCGTAGACCTAATGACTT 60.159 50.000 0.00 0.00 0.00 3.01
2117 2850 1.409427 GCAGCCGTAGACCTAATGACT 59.591 52.381 0.00 0.00 0.00 3.41
2118 2851 1.409427 AGCAGCCGTAGACCTAATGAC 59.591 52.381 0.00 0.00 0.00 3.06
2119 2852 1.776662 AGCAGCCGTAGACCTAATGA 58.223 50.000 0.00 0.00 0.00 2.57
2122 2855 2.029623 CCTTAGCAGCCGTAGACCTAA 58.970 52.381 0.00 0.00 0.00 2.69
2123 2856 1.688772 CCTTAGCAGCCGTAGACCTA 58.311 55.000 0.00 0.00 0.00 3.08
2125 2858 1.227292 GCCTTAGCAGCCGTAGACC 60.227 63.158 0.00 0.00 39.53 3.85
2126 2859 0.528684 CAGCCTTAGCAGCCGTAGAC 60.529 60.000 0.00 0.00 43.56 2.59
2127 2860 1.816537 CAGCCTTAGCAGCCGTAGA 59.183 57.895 0.00 0.00 43.56 2.59
2128 2861 1.884926 GCAGCCTTAGCAGCCGTAG 60.885 63.158 0.00 0.00 45.17 3.51
2142 2875 4.072839 AGACTTTTTAACTAGGTGGCAGC 58.927 43.478 9.02 9.02 0.00 5.25
2145 2878 7.012421 CCATATCAGACTTTTTAACTAGGTGGC 59.988 40.741 0.00 0.00 0.00 5.01
2146 2879 7.012421 GCCATATCAGACTTTTTAACTAGGTGG 59.988 40.741 0.00 0.00 0.00 4.61
2155 2888 9.474313 AATTACCTTGCCATATCAGACTTTTTA 57.526 29.630 0.00 0.00 0.00 1.52
2161 2894 7.715249 TCTGTTAATTACCTTGCCATATCAGAC 59.285 37.037 0.00 0.00 0.00 3.51
2168 2901 7.669722 TCTCTTTTCTGTTAATTACCTTGCCAT 59.330 33.333 0.00 0.00 0.00 4.40
2176 2909 8.669243 CACCCTCATCTCTTTTCTGTTAATTAC 58.331 37.037 0.00 0.00 0.00 1.89
2187 2920 2.040412 GGTCACCACCCTCATCTCTTTT 59.960 50.000 0.00 0.00 36.54 2.27
2189 2922 1.280457 GGTCACCACCCTCATCTCTT 58.720 55.000 0.00 0.00 36.54 2.85
2199 2932 3.955551 TGTTTCTTTTTAGGGTCACCACC 59.044 43.478 0.00 0.00 42.90 4.61
2210 2943 7.116662 TCTCGCGCTTAGTATTGTTTCTTTTTA 59.883 33.333 5.56 0.00 0.00 1.52
2213 2946 4.927425 TCTCGCGCTTAGTATTGTTTCTTT 59.073 37.500 5.56 0.00 0.00 2.52
2221 3336 3.004524 CCTAGGTTCTCGCGCTTAGTATT 59.995 47.826 5.56 0.00 0.00 1.89
2251 3366 8.030692 TGCATTGGTGAGATTCTTTCATTTAAG 58.969 33.333 0.00 0.00 0.00 1.85
2257 3372 5.011586 TCATGCATTGGTGAGATTCTTTCA 58.988 37.500 0.00 0.00 0.00 2.69
2263 3378 6.540438 AATTCTTCATGCATTGGTGAGATT 57.460 33.333 0.00 0.00 0.00 2.40
2264 3379 6.540438 AAATTCTTCATGCATTGGTGAGAT 57.460 33.333 0.00 0.00 0.00 2.75
2265 3380 5.988310 AAATTCTTCATGCATTGGTGAGA 57.012 34.783 0.00 0.00 0.00 3.27
2267 3382 7.230849 ACTAAAATTCTTCATGCATTGGTGA 57.769 32.000 0.00 0.00 0.00 4.02
2275 3390 7.071414 GGTTTTGCAACTAAAATTCTTCATGC 58.929 34.615 0.00 0.00 32.71 4.06
2319 3434 4.651778 AGATGCTTAACTTGTTGGTGCTA 58.348 39.130 0.00 0.00 0.00 3.49
2320 3435 3.490348 AGATGCTTAACTTGTTGGTGCT 58.510 40.909 0.00 0.00 0.00 4.40
2322 3437 4.669197 GCGTAGATGCTTAACTTGTTGGTG 60.669 45.833 0.00 0.00 0.00 4.17
2327 3442 5.523916 CCTAATGCGTAGATGCTTAACTTGT 59.476 40.000 0.00 0.00 35.36 3.16
2332 3447 3.389983 ACCCCTAATGCGTAGATGCTTAA 59.610 43.478 0.00 0.00 35.36 1.85
2339 3454 5.180271 CAACTAAAACCCCTAATGCGTAGA 58.820 41.667 0.00 0.00 30.50 2.59
2349 3464 6.801718 AAAACTTTAGCAACTAAAACCCCT 57.198 33.333 1.82 0.00 35.82 4.79
2368 3483 8.190784 ACATGAGGTGCTAAGCATATTAAAAAC 58.809 33.333 0.00 0.00 41.91 2.43
2370 3485 7.880160 ACATGAGGTGCTAAGCATATTAAAA 57.120 32.000 0.00 0.00 41.91 1.52
2375 3490 6.179906 ACTTACATGAGGTGCTAAGCATAT 57.820 37.500 0.00 0.00 41.91 1.78
2377 3492 4.494091 ACTTACATGAGGTGCTAAGCAT 57.506 40.909 0.00 0.00 41.91 3.79
2388 3503 6.682423 TCAATGCATTGGTACTTACATGAG 57.318 37.500 33.22 8.23 38.30 2.90
2393 3508 7.472543 CCTACTTTCAATGCATTGGTACTTAC 58.527 38.462 33.22 0.00 38.30 2.34
2402 3517 5.067023 GCTCTAAGCCTACTTTCAATGCATT 59.933 40.000 5.99 5.99 37.33 3.56
2411 4069 4.040461 TGACAGTTGCTCTAAGCCTACTTT 59.960 41.667 0.00 0.00 41.51 2.66
2412 4070 3.578716 TGACAGTTGCTCTAAGCCTACTT 59.421 43.478 0.00 0.00 41.51 2.24
2415 4073 5.221521 CCATATGACAGTTGCTCTAAGCCTA 60.222 44.000 3.65 0.00 41.51 3.93
2418 4076 3.249559 GCCATATGACAGTTGCTCTAAGC 59.750 47.826 3.65 0.00 42.82 3.09
2445 4562 7.008086 CGTTATACTAGCAGTTATTATGCCGAC 59.992 40.741 0.00 0.00 44.97 4.79
2446 4563 7.025365 CGTTATACTAGCAGTTATTATGCCGA 58.975 38.462 0.00 0.00 44.97 5.54
2447 4564 7.025365 TCGTTATACTAGCAGTTATTATGCCG 58.975 38.462 0.00 0.00 44.97 5.69
2448 4565 8.928270 ATCGTTATACTAGCAGTTATTATGCC 57.072 34.615 0.00 0.00 44.97 4.40
2464 4581 8.492748 TGCTATTTCGGATCAAAATCGTTATAC 58.507 33.333 8.18 0.00 32.24 1.47
2479 4596 4.750098 GCTAAAGTGCTATGCTATTTCGGA 59.250 41.667 0.00 0.00 0.00 4.55
2482 4599 7.905031 CTTTGCTAAAGTGCTATGCTATTTC 57.095 36.000 0.00 0.00 33.80 2.17
2552 4669 0.249657 GGAGGCTATGAGCTCGGTTG 60.250 60.000 9.64 2.73 41.99 3.77
2576 4693 4.636206 ACTTGGTCTTCACAGTCTTCAAAC 59.364 41.667 0.00 0.00 0.00 2.93
2578 4695 4.487714 ACTTGGTCTTCACAGTCTTCAA 57.512 40.909 0.00 0.00 0.00 2.69
2579 4696 4.487714 AACTTGGTCTTCACAGTCTTCA 57.512 40.909 0.00 0.00 0.00 3.02
2580 4697 4.035675 CCAAACTTGGTCTTCACAGTCTTC 59.964 45.833 0.00 0.00 43.43 2.87
2581 4698 3.947834 CCAAACTTGGTCTTCACAGTCTT 59.052 43.478 0.00 0.00 43.43 3.01
2583 4700 3.971032 CCAAACTTGGTCTTCACAGTC 57.029 47.619 0.00 0.00 43.43 3.51
2619 4764 2.058829 AAACTTCCCGCGTGCAGTTG 62.059 55.000 7.41 0.00 29.78 3.16
2629 4774 4.201724 CGCATAAGAAGAAGAAACTTCCCG 60.202 45.833 7.72 0.00 44.90 5.14
2633 4778 4.072131 TGGCGCATAAGAAGAAGAAACTT 58.928 39.130 10.83 0.00 0.00 2.66
2634 4779 3.437049 GTGGCGCATAAGAAGAAGAAACT 59.563 43.478 10.83 0.00 0.00 2.66
2635 4780 3.188460 TGTGGCGCATAAGAAGAAGAAAC 59.812 43.478 10.83 0.00 0.00 2.78
2636 4781 3.407698 TGTGGCGCATAAGAAGAAGAAA 58.592 40.909 10.83 0.00 0.00 2.52
2637 4782 3.052455 TGTGGCGCATAAGAAGAAGAA 57.948 42.857 10.83 0.00 0.00 2.52
2638 4783 2.760634 TGTGGCGCATAAGAAGAAGA 57.239 45.000 10.83 0.00 0.00 2.87
2639 4784 2.540361 GCATGTGGCGCATAAGAAGAAG 60.540 50.000 14.03 0.00 35.74 2.85
2640 4785 1.401552 GCATGTGGCGCATAAGAAGAA 59.598 47.619 14.03 0.00 35.74 2.52
2641 4786 1.016627 GCATGTGGCGCATAAGAAGA 58.983 50.000 14.03 0.00 35.74 2.87
2642 4787 3.539253 GCATGTGGCGCATAAGAAG 57.461 52.632 14.03 1.96 35.74 2.85
2652 4797 2.097954 TGATTCAAATCTCGCATGTGGC 59.902 45.455 6.39 0.00 36.39 5.01
2653 4798 4.100529 GTTGATTCAAATCTCGCATGTGG 58.899 43.478 6.39 0.00 36.39 4.17
2654 4799 4.100529 GGTTGATTCAAATCTCGCATGTG 58.899 43.478 0.00 0.00 36.39 3.21
2655 4800 3.129287 GGGTTGATTCAAATCTCGCATGT 59.871 43.478 0.00 0.00 36.39 3.21
2656 4801 3.129113 TGGGTTGATTCAAATCTCGCATG 59.871 43.478 0.00 0.00 36.39 4.06
2657 4802 3.355378 TGGGTTGATTCAAATCTCGCAT 58.645 40.909 0.00 0.00 36.39 4.73
2658 4803 2.789213 TGGGTTGATTCAAATCTCGCA 58.211 42.857 0.00 0.92 36.39 5.10
2659 4804 3.501950 GTTGGGTTGATTCAAATCTCGC 58.498 45.455 0.00 0.00 36.39 5.03
2660 4805 3.758554 AGGTTGGGTTGATTCAAATCTCG 59.241 43.478 0.00 0.00 36.39 4.04
2661 4806 4.158579 GGAGGTTGGGTTGATTCAAATCTC 59.841 45.833 0.00 0.96 36.39 2.75
2662 4807 4.089361 GGAGGTTGGGTTGATTCAAATCT 58.911 43.478 0.00 0.00 36.39 2.40
2663 4808 3.831911 TGGAGGTTGGGTTGATTCAAATC 59.168 43.478 0.00 0.00 35.97 2.17
2664 4809 3.855668 TGGAGGTTGGGTTGATTCAAAT 58.144 40.909 0.00 0.00 0.00 2.32
2665 4810 3.320610 TGGAGGTTGGGTTGATTCAAA 57.679 42.857 0.00 0.00 0.00 2.69
2666 4811 2.962421 GTTGGAGGTTGGGTTGATTCAA 59.038 45.455 0.00 0.00 0.00 2.69
2667 4812 2.593026 GTTGGAGGTTGGGTTGATTCA 58.407 47.619 0.00 0.00 0.00 2.57
2668 4813 1.539827 CGTTGGAGGTTGGGTTGATTC 59.460 52.381 0.00 0.00 0.00 2.52
2669 4814 1.616159 CGTTGGAGGTTGGGTTGATT 58.384 50.000 0.00 0.00 0.00 2.57
2670 4815 0.893727 GCGTTGGAGGTTGGGTTGAT 60.894 55.000 0.00 0.00 0.00 2.57
2671 4816 1.527380 GCGTTGGAGGTTGGGTTGA 60.527 57.895 0.00 0.00 0.00 3.18
2672 4817 1.178534 ATGCGTTGGAGGTTGGGTTG 61.179 55.000 0.00 0.00 0.00 3.77
2673 4818 0.893727 GATGCGTTGGAGGTTGGGTT 60.894 55.000 0.00 0.00 0.00 4.11
2674 4819 1.303317 GATGCGTTGGAGGTTGGGT 60.303 57.895 0.00 0.00 0.00 4.51
2675 4820 0.680921 ATGATGCGTTGGAGGTTGGG 60.681 55.000 0.00 0.00 0.00 4.12
2676 4821 0.734889 GATGATGCGTTGGAGGTTGG 59.265 55.000 0.00 0.00 0.00 3.77
2677 4822 0.374758 CGATGATGCGTTGGAGGTTG 59.625 55.000 0.00 0.00 0.00 3.77
2678 4823 0.249120 TCGATGATGCGTTGGAGGTT 59.751 50.000 0.00 0.00 0.00 3.50
2679 4824 0.460284 GTCGATGATGCGTTGGAGGT 60.460 55.000 0.00 0.00 0.00 3.85
2680 4825 1.482621 CGTCGATGATGCGTTGGAGG 61.483 60.000 0.00 0.00 0.00 4.30
2681 4826 0.525455 TCGTCGATGATGCGTTGGAG 60.525 55.000 2.39 0.00 0.00 3.86
2682 4827 0.800683 GTCGTCGATGATGCGTTGGA 60.801 55.000 11.16 0.00 0.00 3.53
2683 4828 1.631072 GTCGTCGATGATGCGTTGG 59.369 57.895 11.16 0.00 0.00 3.77
2684 4829 1.266943 CGTCGTCGATGATGCGTTG 59.733 57.895 13.67 0.00 39.71 4.10
2685 4830 1.872234 CCGTCGTCGATGATGCGTT 60.872 57.895 19.51 0.00 39.71 4.84
2686 4831 2.277949 CCGTCGTCGATGATGCGT 60.278 61.111 19.51 0.00 39.71 5.24
2687 4832 3.024609 CCCGTCGTCGATGATGCG 61.025 66.667 19.51 14.54 39.71 4.73
2688 4833 3.330853 GCCCGTCGTCGATGATGC 61.331 66.667 19.51 14.32 39.71 3.91
2689 4834 2.104132 TGCCCGTCGTCGATGATG 59.896 61.111 18.24 18.24 39.71 3.07
2690 4835 2.104331 GTGCCCGTCGTCGATGAT 59.896 61.111 16.06 0.00 39.71 2.45
2691 4836 4.124351 GGTGCCCGTCGTCGATGA 62.124 66.667 16.06 2.39 39.71 2.92
2704 4849 1.034838 TGTCATTAATGGCCGGGTGC 61.035 55.000 17.15 0.00 40.16 5.01
2705 4850 0.738389 GTGTCATTAATGGCCGGGTG 59.262 55.000 17.15 0.00 0.00 4.61
2706 4851 0.746563 CGTGTCATTAATGGCCGGGT 60.747 55.000 17.15 0.00 0.00 5.28
2707 4852 0.462937 TCGTGTCATTAATGGCCGGG 60.463 55.000 22.21 11.48 30.68 5.73
2708 4853 0.655733 GTCGTGTCATTAATGGCCGG 59.344 55.000 22.21 13.45 30.68 6.13
2709 4854 0.655733 GGTCGTGTCATTAATGGCCG 59.344 55.000 17.15 18.12 0.00 6.13
2710 4855 0.655733 CGGTCGTGTCATTAATGGCC 59.344 55.000 17.15 7.85 0.00 5.36
2711 4856 0.027586 GCGGTCGTGTCATTAATGGC 59.972 55.000 13.24 13.24 0.00 4.40
2712 4857 1.593006 GAGCGGTCGTGTCATTAATGG 59.407 52.381 15.36 0.00 0.00 3.16
2713 4858 1.593006 GGAGCGGTCGTGTCATTAATG 59.407 52.381 9.29 9.29 0.00 1.90
2714 4859 1.206132 TGGAGCGGTCGTGTCATTAAT 59.794 47.619 8.77 0.00 0.00 1.40
2715 4860 0.604073 TGGAGCGGTCGTGTCATTAA 59.396 50.000 8.77 0.00 0.00 1.40
2716 4861 0.821517 ATGGAGCGGTCGTGTCATTA 59.178 50.000 8.77 0.00 0.00 1.90
2717 4862 0.460284 GATGGAGCGGTCGTGTCATT 60.460 55.000 8.77 0.00 0.00 2.57
2718 4863 1.141881 GATGGAGCGGTCGTGTCAT 59.858 57.895 8.77 6.17 0.00 3.06
2719 4864 2.571757 GATGGAGCGGTCGTGTCA 59.428 61.111 8.77 0.84 0.00 3.58
2720 4865 2.579787 CGATGGAGCGGTCGTGTC 60.580 66.667 8.77 5.58 33.42 3.67
2721 4866 4.129737 CCGATGGAGCGGTCGTGT 62.130 66.667 8.77 0.00 46.07 4.49
2737 4882 4.191015 GGGCTCCCACGGGAATCC 62.191 72.222 6.23 10.02 44.66 3.01
2738 4883 4.547367 CGGGCTCCCACGGGAATC 62.547 72.222 6.23 1.01 44.66 2.52
2739 4884 3.988050 TACGGGCTCCCACGGGAAT 62.988 63.158 6.23 0.00 44.66 3.01
2740 4885 4.700448 TACGGGCTCCCACGGGAA 62.700 66.667 6.23 0.00 44.66 3.97
2741 4886 4.700448 TTACGGGCTCCCACGGGA 62.700 66.667 4.36 4.36 42.90 5.14
2742 4887 4.157120 CTTACGGGCTCCCACGGG 62.157 72.222 5.70 0.00 35.37 5.28
2743 4888 2.432300 ATCTTACGGGCTCCCACGG 61.432 63.158 5.70 0.00 35.37 4.94
2744 4889 1.227263 CATCTTACGGGCTCCCACG 60.227 63.158 5.70 0.00 35.37 4.94
2745 4890 1.146263 CCATCTTACGGGCTCCCAC 59.854 63.158 5.70 0.00 35.37 4.61
2746 4891 1.306654 ACCATCTTACGGGCTCCCA 60.307 57.895 5.70 0.00 35.37 4.37
2747 4892 1.146263 CACCATCTTACGGGCTCCC 59.854 63.158 0.00 0.00 0.00 4.30
2748 4893 1.523938 GCACCATCTTACGGGCTCC 60.524 63.158 0.00 0.00 0.00 4.70
2749 4894 1.523938 GGCACCATCTTACGGGCTC 60.524 63.158 0.00 0.00 0.00 4.70
2750 4895 1.635817 ATGGCACCATCTTACGGGCT 61.636 55.000 0.00 0.00 29.42 5.19
2751 4896 1.152963 ATGGCACCATCTTACGGGC 60.153 57.895 0.00 0.00 29.42 6.13
2752 4897 0.107214 ACATGGCACCATCTTACGGG 60.107 55.000 0.00 0.00 33.90 5.28
2753 4898 1.016627 CACATGGCACCATCTTACGG 58.983 55.000 0.00 0.00 33.90 4.02
2754 4899 1.016627 CCACATGGCACCATCTTACG 58.983 55.000 0.00 0.00 33.90 3.18
2766 4911 1.954382 CCAAGAGATGATGCCACATGG 59.046 52.381 0.00 0.00 38.53 3.66
2767 4912 1.337071 GCCAAGAGATGATGCCACATG 59.663 52.381 0.00 0.00 0.00 3.21
2768 4913 1.214673 AGCCAAGAGATGATGCCACAT 59.785 47.619 0.00 0.00 0.00 3.21
2769 4914 0.622136 AGCCAAGAGATGATGCCACA 59.378 50.000 0.00 0.00 0.00 4.17
2770 4915 1.404391 CAAGCCAAGAGATGATGCCAC 59.596 52.381 0.00 0.00 0.00 5.01
2771 4916 1.758936 CAAGCCAAGAGATGATGCCA 58.241 50.000 0.00 0.00 0.00 4.92
2772 4917 0.384669 GCAAGCCAAGAGATGATGCC 59.615 55.000 0.00 0.00 31.11 4.40
2773 4918 1.100510 TGCAAGCCAAGAGATGATGC 58.899 50.000 0.00 0.00 35.10 3.91
2774 4919 1.063616 CGTGCAAGCCAAGAGATGATG 59.936 52.381 0.00 0.00 0.00 3.07
2775 4920 1.339438 ACGTGCAAGCCAAGAGATGAT 60.339 47.619 0.00 0.00 0.00 2.45
2776 4921 0.035317 ACGTGCAAGCCAAGAGATGA 59.965 50.000 0.00 0.00 0.00 2.92
2777 4922 0.167470 CACGTGCAAGCCAAGAGATG 59.833 55.000 0.82 0.00 0.00 2.90
2778 4923 0.035317 TCACGTGCAAGCCAAGAGAT 59.965 50.000 11.67 0.00 0.00 2.75
2779 4924 0.601046 CTCACGTGCAAGCCAAGAGA 60.601 55.000 11.67 0.00 0.00 3.10
2780 4925 1.864862 CTCACGTGCAAGCCAAGAG 59.135 57.895 11.67 0.00 0.00 2.85
2781 4926 2.253758 GCTCACGTGCAAGCCAAGA 61.254 57.895 16.29 0.00 32.22 3.02
2782 4927 2.253452 GCTCACGTGCAAGCCAAG 59.747 61.111 16.29 5.96 32.22 3.61
2783 4928 2.515757 TGCTCACGTGCAAGCCAA 60.516 55.556 22.24 6.08 40.29 4.52
2784 4929 2.974148 CTGCTCACGTGCAAGCCA 60.974 61.111 22.24 11.96 42.83 4.75
2785 4930 2.666190 TCTGCTCACGTGCAAGCC 60.666 61.111 22.24 8.63 42.83 4.35
2786 4931 2.553268 GTCTGCTCACGTGCAAGC 59.447 61.111 19.38 19.38 42.83 4.01
2787 4932 2.661566 CGGTCTGCTCACGTGCAAG 61.662 63.158 11.67 5.16 42.83 4.01
2788 4933 2.661537 CGGTCTGCTCACGTGCAA 60.662 61.111 11.67 0.00 42.83 4.08
2789 4934 3.558099 CTCGGTCTGCTCACGTGCA 62.558 63.158 11.67 5.40 41.05 4.57
2790 4935 2.807045 CTCGGTCTGCTCACGTGC 60.807 66.667 11.67 0.00 0.00 5.34
2791 4936 2.126307 CCTCGGTCTGCTCACGTG 60.126 66.667 9.94 9.94 0.00 4.49
2792 4937 2.282251 TCCTCGGTCTGCTCACGT 60.282 61.111 0.00 0.00 0.00 4.49
2793 4938 2.487428 CTCCTCGGTCTGCTCACG 59.513 66.667 0.00 0.00 0.00 4.35
2794 4939 2.183046 GCTCCTCGGTCTGCTCAC 59.817 66.667 0.00 0.00 0.00 3.51
2795 4940 3.071206 GGCTCCTCGGTCTGCTCA 61.071 66.667 0.00 0.00 0.00 4.26
2796 4941 4.200283 CGGCTCCTCGGTCTGCTC 62.200 72.222 0.00 0.00 0.00 4.26
2798 4943 3.591254 AAACGGCTCCTCGGTCTGC 62.591 63.158 0.00 0.00 0.00 4.26
2799 4944 1.738099 CAAACGGCTCCTCGGTCTG 60.738 63.158 0.00 0.00 0.00 3.51
2800 4945 1.878656 CTCAAACGGCTCCTCGGTCT 61.879 60.000 0.00 0.00 0.00 3.85
2801 4946 1.446272 CTCAAACGGCTCCTCGGTC 60.446 63.158 0.00 0.00 0.00 4.79
2802 4947 2.657237 CTCAAACGGCTCCTCGGT 59.343 61.111 0.00 0.00 0.00 4.69
2803 4948 2.815647 GCTCAAACGGCTCCTCGG 60.816 66.667 0.00 0.00 0.00 4.63
2804 4949 2.048222 TGCTCAAACGGCTCCTCG 60.048 61.111 0.00 0.00 0.00 4.63
2805 4950 1.004440 ACTGCTCAAACGGCTCCTC 60.004 57.895 0.00 0.00 0.00 3.71
2806 4951 1.004440 GACTGCTCAAACGGCTCCT 60.004 57.895 0.00 0.00 0.00 3.69
2807 4952 2.383527 CGACTGCTCAAACGGCTCC 61.384 63.158 0.00 0.00 0.00 4.70
2808 4953 2.383527 CCGACTGCTCAAACGGCTC 61.384 63.158 0.00 0.00 38.98 4.70
2809 4954 2.357517 CCGACTGCTCAAACGGCT 60.358 61.111 0.00 0.00 38.98 5.52
2810 4955 3.423154 CCCGACTGCTCAAACGGC 61.423 66.667 0.00 0.00 43.37 5.68
2811 4956 1.738099 CTCCCGACTGCTCAAACGG 60.738 63.158 0.00 0.00 44.16 4.44
2812 4957 2.383527 GCTCCCGACTGCTCAAACG 61.384 63.158 0.00 0.00 0.00 3.60
2813 4958 2.383527 CGCTCCCGACTGCTCAAAC 61.384 63.158 0.00 0.00 36.29 2.93
2814 4959 2.048222 CGCTCCCGACTGCTCAAA 60.048 61.111 0.00 0.00 36.29 2.69
2815 4960 4.742201 GCGCTCCCGACTGCTCAA 62.742 66.667 0.00 0.00 36.29 3.02
2825 4970 2.742372 ATGTTCACACGCGCTCCC 60.742 61.111 5.73 0.00 0.00 4.30
2826 4971 2.027073 TCATGTTCACACGCGCTCC 61.027 57.895 5.73 0.00 0.00 4.70
2827 4972 1.130613 GTCATGTTCACACGCGCTC 59.869 57.895 5.73 0.00 0.00 5.03
2828 4973 2.657757 CGTCATGTTCACACGCGCT 61.658 57.895 5.73 0.00 0.00 5.92
2829 4974 2.202046 CGTCATGTTCACACGCGC 60.202 61.111 5.73 0.00 0.00 6.86
2830 4975 1.154854 CACGTCATGTTCACACGCG 60.155 57.895 3.53 3.53 37.02 6.01
2831 4976 0.111266 GTCACGTCATGTTCACACGC 60.111 55.000 4.00 0.00 37.02 5.34
2832 4977 1.204792 TGTCACGTCATGTTCACACG 58.795 50.000 2.65 2.65 39.48 4.49
2833 4978 2.350192 TGTTGTCACGTCATGTTCACAC 59.650 45.455 0.00 0.00 0.00 3.82
2834 4979 2.622436 TGTTGTCACGTCATGTTCACA 58.378 42.857 0.00 0.00 0.00 3.58
2835 4980 3.878086 ATGTTGTCACGTCATGTTCAC 57.122 42.857 0.00 0.00 0.00 3.18
2836 4981 4.891627 AAATGTTGTCACGTCATGTTCA 57.108 36.364 0.00 0.00 0.00 3.18
2837 4982 5.270083 TGAAAATGTTGTCACGTCATGTTC 58.730 37.500 9.19 9.19 36.74 3.18
2838 4983 5.242069 TGAAAATGTTGTCACGTCATGTT 57.758 34.783 0.00 0.00 0.00 2.71
2839 4984 4.891627 TGAAAATGTTGTCACGTCATGT 57.108 36.364 0.00 0.00 0.00 3.21
2840 4985 5.387649 GCAATGAAAATGTTGTCACGTCATG 60.388 40.000 0.00 0.00 0.00 3.07
2841 4986 4.681025 GCAATGAAAATGTTGTCACGTCAT 59.319 37.500 0.00 0.00 0.00 3.06
2842 4987 4.041049 GCAATGAAAATGTTGTCACGTCA 58.959 39.130 0.00 0.00 0.00 4.35
2843 4988 3.117832 CGCAATGAAAATGTTGTCACGTC 59.882 43.478 0.00 0.00 0.00 4.34
2844 4989 3.042189 CGCAATGAAAATGTTGTCACGT 58.958 40.909 0.00 0.00 0.00 4.49
2845 4990 3.295785 TCGCAATGAAAATGTTGTCACG 58.704 40.909 0.00 0.00 0.00 4.35
2846 4991 4.536065 TCTCGCAATGAAAATGTTGTCAC 58.464 39.130 0.00 0.00 0.00 3.67
2847 4992 4.827304 TCTCGCAATGAAAATGTTGTCA 57.173 36.364 0.00 0.00 0.00 3.58
2848 4993 5.393124 TCATCTCGCAATGAAAATGTTGTC 58.607 37.500 0.00 0.00 32.80 3.18
2849 4994 5.375417 TCATCTCGCAATGAAAATGTTGT 57.625 34.783 0.00 0.00 32.80 3.32
2850 4995 4.264614 GCTCATCTCGCAATGAAAATGTTG 59.735 41.667 1.96 0.00 35.32 3.33
2851 4996 4.418392 GCTCATCTCGCAATGAAAATGTT 58.582 39.130 1.96 0.00 35.32 2.71
2852 4997 3.181493 GGCTCATCTCGCAATGAAAATGT 60.181 43.478 1.96 0.00 35.32 2.71
2853 4998 3.369385 GGCTCATCTCGCAATGAAAATG 58.631 45.455 1.96 0.00 35.32 2.32
2854 4999 2.360165 GGGCTCATCTCGCAATGAAAAT 59.640 45.455 1.96 0.00 35.32 1.82
2855 5000 1.745087 GGGCTCATCTCGCAATGAAAA 59.255 47.619 1.96 0.00 35.32 2.29
2856 5001 1.382522 GGGCTCATCTCGCAATGAAA 58.617 50.000 1.96 0.00 35.32 2.69
2857 5002 0.464373 GGGGCTCATCTCGCAATGAA 60.464 55.000 0.00 0.00 35.32 2.57
2858 5003 1.146930 GGGGCTCATCTCGCAATGA 59.853 57.895 0.00 0.56 34.55 2.57
2859 5004 0.465097 AAGGGGCTCATCTCGCAATG 60.465 55.000 0.00 0.00 0.00 2.82
2860 5005 0.179034 GAAGGGGCTCATCTCGCAAT 60.179 55.000 0.00 0.00 0.00 3.56
2861 5006 1.221840 GAAGGGGCTCATCTCGCAA 59.778 57.895 0.00 0.00 0.00 4.85
2862 5007 1.989508 TGAAGGGGCTCATCTCGCA 60.990 57.895 0.00 0.00 0.00 5.10
2863 5008 1.522580 GTGAAGGGGCTCATCTCGC 60.523 63.158 0.00 0.00 0.00 5.03
2864 5009 1.144936 GGTGAAGGGGCTCATCTCG 59.855 63.158 0.00 0.00 0.00 4.04
2865 5010 0.107459 GTGGTGAAGGGGCTCATCTC 60.107 60.000 0.00 0.00 0.00 2.75
2866 5011 0.548682 AGTGGTGAAGGGGCTCATCT 60.549 55.000 0.00 0.00 0.00 2.90
2867 5012 0.107459 GAGTGGTGAAGGGGCTCATC 60.107 60.000 0.00 0.00 0.00 2.92
2868 5013 0.548682 AGAGTGGTGAAGGGGCTCAT 60.549 55.000 0.00 0.00 0.00 2.90
2869 5014 1.152030 AGAGTGGTGAAGGGGCTCA 60.152 57.895 0.00 0.00 0.00 4.26
2870 5015 3.813150 AGAGTGGTGAAGGGGCTC 58.187 61.111 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.